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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs4332474          
refSNP ID: rs4332474
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:111/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NT_033985.6:g.82010T>C
NT_033985.6:g.82010T>G
XM_001717196.1:c.327-2041T>C
XM_001717196.1:c.327-2041T>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss14426266 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4332474 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss5756356SC_JCM|NT_033985.2_82010fwd/BC/Ttctaagaaagattggcaaagggaatttaaaatttcctaaatttttggaatttccctaggc01/10/0310/10/03111Genomicunknown
ss13406720SC_SNP|NT_078084.1_82010fwd/BG/Ttctaagaaagattggcaaagggaatttaaaatttcctaaatttttggaatttccctaggc10/23/0310/31/03119Genomicunknown
ss14426266WUGSC_SSAHASNP|chr10.NT_033985.6_82010fwd/BG/Ttctaagaaagattggcaaagggaatttaaaatttcctaaatttttggaatttccctaggc11/05/0311/22/03119Genomicunknown
ss16023915SC_SNP|NT_033985.6_82010fwd/BC/Ttctaagaaagattggcaaagggaatttaaaatttcctaaatttttggaatttccctaggc11/18/0311/22/03120Genomicunknown
ss16474472CSHL-HAPMAP|CSHL-HuAA-200402.chr10.NT_033985.6_82010fwd/BG/Ttctaagaaagattggcaaagggaatttaaaatttcctaaatttttggaatttccctaggc02/17/0403/04/04120Genomicunknown
ss35393846SSAHASNP|TA-079.chr10_41998703fwd/C/G/Ttctaagaaagattggcaaagggaatttaaaatttcctaaatttttggaatttccctaggc03/11/05125Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs4332474|allelePos=201|totalLen=701|taxid=9606|snpclass=1|alleles='C/G/T'|mol=Genomic|build=125
 GGCGATCGAC CTAGAAAAAA CCTGAGACTC TAGGACTGTC TGATGTGTGG ATGTCAAATC
 CTGGGAGATT CTGAGTCTCT GCTCTATGTG GACTCTATGT TGTGTAGCCA TTTGTGGAAG
 GCTTCTGTGA TTTTGTGACC TAGAGAAAAT GAATCTCTGC TAAAATCAAA TCTAAGAAAG
 ATTGGCAAAG GGAATTTAAA
 B
 ATTTCCTAAA TTTTTGGAAT TTCCCTAGGC ATTAAAACAT GAGAAGTGGC AATAATTCAA
 ACCAACGATG CCCTCCAAGA ATAAGGATTT TTCCAATGCA TTAGGTTGGG TCCCCTCAGT
 GAGAAGGATG CCAAAGATTC GCATGTAGAC AGTATATTTA CAAAGTGCGG GAAACAAGCA
 AGTGAGCAAG GGAGGGGAGG AGGGAAAGGG AAAGTGAAAG GTGCCTCAGA AGGAGCCACC
 TCTGAGGATG ACGAGAGCTC AAGCCCACAT AGAAACACAG GAAAAATGCC TCTGTTATTC
 CACCTGAGAG GTGAGGGAGC TGGGGGATGT GTACACCTCC CTTGTCATCA CTGATTGACA
 GCCGTCCTAG GGGATGCTAA TTCCAGGCCA TGAGGTCTGC CTCATTTGCA GCCTGAGCTG
 CTTCCCCAGG TTCAGATAGA GCAGTGAAGG GGAGAAAGGG CCATAGAGAG TCAGCTGAAG
 TATAATGACT AGAATCCCCA

  GeneView back to top
GeneView via analysis of contig annotation: LOC642424 similar to hCG1742442
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_033985->XM_001717196
svfunction
HuRefNW_001837940->XM_001732831
svfunction
CeleraNW_924606->XM_001713971
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_033985->XM_001717196->XP_00171724882010forwardintron
HuRefNW_001837940->XM_001732831->XP_001732883105307forwardintron
CeleraNW_924606->XM_001713971->XP_00171402397440forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs4332474 maps exactly once on NCBI human chromosome 10
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
10NW_924606.19744038686292plusTalt_assembly_1CeleraCeleraview200
10NW_001837940.110530739203588plusTalt_assembly_8HuRefHuRefview200
10NT_033985.68201041998703plusTref_assemblyreferencereferenceview200

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_078084
dbSNP Blast Analysis
GenBank HTGS Finished:
AL031601.4

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .