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1: Wdr3 WD repeat domain 3 [ Rattus norvegicus ]

GeneID: 310720 updated 21-Dec-2008

[Top][Help]Summary

Official Symbol
Wdr3provided by RGD
Official Full Name
WD repeat domain 3provided by RGD
Primary source
RGD:1307480
See related
Ensembl:ENSRNOG00000019670
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Wdr3

[Top][Help]Genomic regions, transcripts, and products

(minus strand) Go to reference sequence detailsTry our new Sequence Viewer




Genomic context[Top][Help]

chromosome: 2; Location: 2q34See Wdr3 in MapViewer

[Top][Help]Bibliography

GeneRIFs: Gene References Into FunctionWhat's a GeneRIF?

Submit: New GeneRIF

[Top][Help]General gene information

Markers

RH129876(e-PCR)
Links: UniSTS:213164
Alternate names: AA997374; RGD:18686

Homology

Human, Mouse
Map Viewer

[Top][Help]General protein information

Preferred Names
WD repeat domain 3
Names
WD repeat domain 3

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

  1. NM_001107705.1→NP_001101175.1 WD repeat domain 3

    Source sequence(s)
    CH474015
    Conserved Domains (4) summary
    cd00200
    Location:406–701
    Blast Score:521
    Location:47–221
    Blast Score:325
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues...
    COG2319
    Location:258–697
    Blast Score:287
    COG2319; FOG: WD40 repeat [General function prediction only]
    pfam04003
    Location:731–926
    Blast Score:614
    Utp12; Dip2/Utp12 Family

RefSeqs of Annotated Genomes: Build 4.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_005101.2 Reference assembly

    Range
    195116587..195093948, complement
    Download
    GenBank  FASTA Sequence Viewer (Graphics)

Reference assembly (based on RGSC v3.4)

Genomic

  1. NW_047627.2 Reference assembly (based on RGSC v3.4)

    Range
    3362051..3339412, complement
    Download
    GenBank  FASTA Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_227527.3→XP_227527.2

    Conserved Domains (4) summary
    cd00200
    Location:406–701
    Blast Score:521
    Location:47–221
    Blast Score:325
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues...
    COG2319
    Location:258–697
    Blast Score:287
    COG2319; FOG: WD40 repeat [General function prediction only]
    pfam04003
    Location:731–926
    Blast Score:614
    Utp12; Dip2/Utp12 Family

Alternate assembly (based on Celera assembly)

Genomic

  1. AC_000070.1 Alternate assembly (based on Celera assembly)

    Range
    179977145..179954568, complement
    Download
    GenBank  FASTA Sequence Viewer (Graphics)

  2. NW_001084807.1

    Range
    5548803..5526226, complement
    Download
    GenBank  FASTA Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001065786.1→XP_001065786.1

    Conserved Domains (4) summary
    cd00200
    Location:406–701
    Blast Score:521
    Location:47–221
    Blast Score:325
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues...
    COG2319
    Location:258–697
    Blast Score:287
    COG2319; FOG: WD40 repeat [General function prediction only]
    pfam04003
    Location:731–926
    Blast Score:614
    Utp12; Dip2/Utp12 Family

[Top][Help]Related Sequences

Nucleotide   Protein
Genomic   CH474015.2   EDL85539.1
    EDL85540.1
    EDL85541.1
    EDL85542.1
    EDL85543.1