Reference SNP(refSNP) Cluster Report: rs836106

Reference SNP(refSNP) Cluster Report: rs836106

refSNP ID: rs836106
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	86/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss5289225 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs836106 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss104829	TSC-CSHL\|TSC0138866	fwd/B	C/G	tcattgcaagcgccacattatctcaccctc	aatcctgctgggatgacttcttatcttcag	09/06/00	10/10/03	108	Genomic	unknown
ss1161879	KWOK\|OVLP-000804-505082	fwd/B	C/G	tcattgcaagcgccacattatctcaccctc	aatcctgctgggatgacttcttatcttcag	09/02/00	10/10/03	86	Genomic	99 %
ss1926606	KWOK\|OVLP-000925-666213	fwd/B	C/G	tcattgcaagcgccacattatctcaccctc	aatcctgctgggatgacttcttatcttcag	10/06/00	10/10/03	87	Genomic	99 %
ss3660964	SC_JCM\|AC019083.8_61837	fwd/B	C/G	tcattgcaagcgccacattatctcaccctc	aatcctgctgggatgacttcttatcttcag	09/24/01	10/10/03	100	Genomic	unknown
ss5289225	TSC-CSHL\|TSC1685019	fwd/B	C/G	tcattgcaagcgccacattatctcaccctc	aatcctgctgggatgacttcttatcttcag	09/20/02	04/07/04	108	Genomic	unknown
ss16112887	SC_SNP\|NT_009237.16_33334891	rev/T	C/G	ctgaagataagaagtcatcccagcaggatt	gagggtgagataatgtggcgcttgcaatga	11/18/03	11/22/03	120	Genomic	unknown
ss17424541	CSHL-HAPMAP\|CSHL-HuCC-200402.chr11.NT_009237.16_33334891	rev/T	C/G	ctgaagataagaagtcatcccagcaggatt	gagggtgagataatgtggcgcttgcaatga	02/19/04	03/04/04	120	Genomic	unknown
ss19202995	CSHL-HAPMAP\|CSHL-HuDD-200402.chr11.NT_009237.16_33334891	rev/T	C/G	ctgaagataagaagtcatcccagcaggatt	gagggtgagataatgtggcgcttgcaatga	02/20/04	03/04/04	120	Genomic	unknown
ss24072467	PERLEGEN\|afd0619389	rev/T	C/G	ctgaagataagaagtcatcccagcaggatt	gagggtgagataatgtggcgcttgcaatga	08/10/04	09/13/04	123	Genomic	unknown
ss38789785	ABI\|hCV1883299	rev/	C/G	ctgaagataagaagtcatcccagcaggatt	gagggtgagataatgtggcgcttgcaatga	07/16/05	07/16/05	126	Genomic	unknown
ss76591819	AFFY\|AFFY_6_1M_SNP_A-8453018	fwd/	C/G	acattatctcaccctc	aatcctgctgggatga	08/28/07	08/30/07	129	Genomic	unknown
ss84975557	HGSV\|Cor19240_SNV_20070510.chr11_34527527	rev/	C/G	ctgaagataagaagtcatcccagcaggatt	gagggtgagataatgtggcgcttgcaatga	11/30/07	12/08/07	130	Genomic	unknown
ss86073791	HGSV\|Cor18956_SNV_20070510.chr11_34527527	rev/	C/G	ctgaagataagaagtcatcccagcaggatt	gagggtgagataatgtggcgcttgcaatga	11/30/07	12/11/07	130	Genomic	unknown
ss88534864	BCMHGSC_JDW\|JWB-0404265	rev/	C/G	ctgaagataagaagtcatcccagcaggatt	gagggtgagataatgtggcgcttgcaatga	02/26/08	02/27/08	129	Genomic	unknown

Fasta sequence (Legend)

 CAAATTATCC CTTGTAGGGG TAATATAAAA AGTGGGCTTT TTCATAGTAC CCCCTTTCAA
 AATCAAATTC CGCTTTGGGG GTATCTCATT GAAGGAGCCA AGTCCTATTC CGTGACCCAG
 CTGTAAAGGG GGCTGAGAAG ACATGAGTCT GGCTCCTCTG TTGGGAAACC AAGACTCAGA
 AAGCAGAAAC AAACCAAAGA AAGGTATTCA AAAAAGCTAG CTGCCATGAG CCTGGTAAAT
 GCTCACTACA GAATGCATGT TACCCAGAGA TCTGCACCAG CAGCCCTGCC CCACCCTCTG
 CAACTGGTCC AGGGACTGGG CTCCTATGCA TTTGCAGTGG GAAGACCTCA GCTCTCCCTA
 GAGAGCCTGC CTGTATTTTT AGCTTTCCCC GGCATGCCTC CCCACACCAG GACTCACTCT
 TCACACATGA GAACTCAGGT GGAAAAAGTC ACCAGTTAAA ATGAACTCAT TGCAAGCGCC
 ACATTATCTC ACCCTC
 S
 AATCCTGCTG GGATGACTTC TTATCTTCAG ATCGGGGTTG TTTTTGACCC AAAATGAATC
 AAACTCAGAC ACAGGATCAG CTATCCGTCA GGAGGGGCAA GTAAGGGAGG GTGGATCACG
 CAAATGTACA CACACATTCA CACATGACAG AGCCATTCCT GTCACTCTCA GAGAGGAAGA
 CAAGTGACTT ATTTACACTC TGCCCCAGAC AAACTGTGCA GGATCCCTCT GGGTCCAGAT
 TTGAGAGCTC ACAGGGCACA CAGTTTGGGC AGGGAGAAAA TGGCAAGGAG AGGAGCCGCC
 CTCCTCACGC AAATGACCCA AGTGCTCCCC CACCCATGTG ACACTTCGGA CTTCAGAATG
 AAGAGACAGA AGGACAAAAA AAGAGATGGG AAGCCACAGG GGATAGTGGC TAGGAGCTTT
 GGTGTCAGAC AGACCTGAGC TCAAATCCTA GCTTGGCTAC TTCTTACTAT GTGCCTTGGA

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs836106 maps exactly once on NCBI human chromosome 11

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
11	NW_001838022.2	16347767	34268275	plus	C	alt_assembly_8	HuRef	HuRef	view	496
11	NT_009237.17	33358192	34527527	minus	G	ref_assembly	reference	reference	view	496
11	NW_925006.1	30218455	34718131	minus	G	alt_assembly_1	Celera	Celera	view	496

NCBI Resource Links

Submitter-Referenced
GenBank
NT_009237 AL137224 AL137224.11 AL137224.9

dbSNP Blast Analysis
GenBank HTGS Finished:
AL137224.17

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/G	G/G	HWP	C	G
ss24072467	AFD_EUR_PANEL	European	48	IG	0.708	0.250	0.042	0.655	0.833	0.167

	AFD_AFR_PANEL	African American	46	IG	0.435	0.435	0.130	1.000	0.652	0.348

	AFD_CHN_PANEL	Asian	48	IG	0.208	0.458	0.333	0.752	0.438	0.562

ss5289225	HapMap-CEU	European	120	IG	0.800	0.200		0.403	0.900	0.100

	HapMap-HCB	Asian	90	IG	0.178	0.533	0.289	0.655	0.444	0.556

	HapMap-JPT	Asian	88	IG	0.068	0.455	0.477	0.584	0.295	0.705

	HapMap-YRI	Sub-Saharan African	120	IG	0.283	0.517	0.200	1.000	0.542	0.458