| 39 proteins |
R | COG0705 | Uncharacterized membrane protein (homolog of Drosophila rhomboid) | Help |
|---|
316 letters
1494 = YGR062c (316) =
107 _ BS_yqjG (275) COG0706
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= YGR062c
(316 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
YGR062c 580 e-165
BS_yqjG 46 7e-05
YIL055c 34 0.22
CC1268 33 0.49
Ta0129 33 0.64
SPy1184 32 1.1
APE1744 32 1.4
mll4175 31 1.9
VC1761 31 2.4
SPy0351 30 4.1
BH1169 30 5.4
HI0936 29 7.1
YMR200w 29 9.2
Cj0723c 29 9.2
HI1680 29 9.2
# >YGR062c
# Length = 316
#
# Score = 580 bits (1494), Expect = e-165
# Identities = 300/316 (94%), Positives = 300/316 (94%)
#
# Query: 1 MLKRLANRQNGFASFSCSSVGLRYGRTNPSTKRSFSLFQSVADTFLTVHEASHIPWIXXX 60
# MLKRLANRQNGFASFSCSSVGLRYGRTNPSTKRSFSLFQSVADTFLTVHEASHIPWI
# Sbjct: 1 MLKRLANRQNGFASFSCSSVGLRYGRTNPSTKRSFSLFQSVADTFLTVHEASHIPWIVLV 60
#
# Query: 61 XXXXXXXXXXXXXPFSIWQRRRILKQQELRKLVQPITPIIKLRLAAVTNKKSRNAARISS 120
# PFSIWQRRRILKQQELRKLVQPITPIIKLRLAAVTNKKSRNAARISS
# Sbjct: 61 PLTTMTLRTLVTLPFSIWQRRRILKQQELRKLVQPITPIIKLRLAAVTNKKSRNAARISS 120
#
# Query: 121 NGSFMPLQLQNAGVLTPEQITLLAVKETRKRQKKLFKKYNVPLWKNALLPMVQIPLWVTV 180
# NGSFMPLQLQNAGVLTPEQITLLAVKETRKRQKKLFKKYNVPLWKNALLPMVQIPLWVTV
# Sbjct: 121 NGSFMPLQLQNAGVLTPEQITLLAVKETRKRQKKLFKKYNVPLWKNALLPMVQIPLWVTV 180
#
# Query: 181 SMGIRTLTETQLIESFYPSWFSALGFSSFDLSSPLVAMPLLAPILVGTLAVLNVELNGRL 240
# SMGIRTLTETQLIESFYPSWFSALGFSSFDLSSPLVAMPLLAPILVGTLAVLNVELNGRL
# Sbjct: 181 SMGIRTLTETQLIESFYPSWFSALGFSSFDLSSPLVAMPLLAPILVGTLAVLNVELNGRL 240
#
# Query: 241 MFSSSLSSQGIKTISRNSTRVQEAMTSILNVSRLGCVVMLAMSSQAPFLLSLYWISSQLF 300
# MFSSSLSSQGIKTISRNSTRVQEAMTSILNVSRLGCVVMLAMSSQAPFLLSLYWISSQLF
# Sbjct: 241 MFSSSLSSQGIKTISRNSTRVQEAMTSILNVSRLGCVVMLAMSSQAPFLLSLYWISSQLF 300
#
# Query: 301 SLVQNIILNWIYPYQR 316
# SLVQNIILNWIYPYQR
# Sbjct: 301 SLVQNIILNWIYPYQR 316
#
#
# >BS_yqjG
# Length = 275
#
# Score = 45.8 bits (107), Expect = 7e-05
# Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
#
# Query: 146 KETRKRQKKLFKKYNV-PLWKNALLPMVQIPLWVTVSMGIRTLTETQLIESFYPSWFSAL 204
# KE + KL++++N+ PL L ++Q P+ + + IR+ E I S WFS L
# Sbjct: 120 KELQMEMMKLYQEHNINPLAMGCLPMLIQSPIMIGLYYAIRSTPE---IASHSFLWFS-L 175
#
# Query: 205 GFSSFDLSSPLVAMPLLAPILVGTLAVLNVELNGRLMFSSSLSSQGIKTISRNSTRVQEA 264
# G S + M L A I+ A + +L+ + + +N Q A
# Sbjct: 176 GQSD-------ILMSLSAGIMYFVQAYIAQKLSAKY-----------SAVPQNPAAQQSA 217
#
# Query: 265 MTSILNVSRLGCVVMLAMSSQAPFLLSLYWISSQLFSLVQNIIL 308
# + + V+M S P L LYW +S LF VQNI+L
# Sbjct: 218 KLMVF----IFPVMMTIFSLNVPAALPLYWFTSGLFLTVQNIVL 257
#
#
# >YIL055c
# Length = 627
#
# Score = 34.3 bits (77), Expect = 0.22
# Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
#
# Query: 79 QRRRILKQQELRKLVQPITPIIKLRLAAVTNKKSRNAARISSNGSFMPLQLQNAGVLTPE 138
# Q L+ ++ I+ + L +A+ +N N S+NG LQ +N G +TP
# Sbjct: 309 QHHLSLRNNKINPSYNEISALYNLNMASNSNNNG-NIPTTSTNGDDRALQAKNGGTITPS 367
#
# Query: 139 QITLLAVKETRKRQKKLFKKY--NVPLWKNALLPMVQIPLWVTVSMGIRTLTETQLIESF 196
# Q + + +K F+K N +W+ L ++ P ++ + + L+E+ E
# Sbjct: 368 QTQINHKRLKHIFNEKSFRKQMTNRGMWQ---LKIINFPPYIPIEF-LEKLSESDFNELM 423
#
# Query: 197 YPSWFSAL 204
# F+ +
# Sbjct: 424 NQEKFTVI 431
#
#
# >CC1268
# Length = 440
#
# Score = 33.1 bits (74), Expect = 0.49
# Identities = 23/70 (32%), Positives = 33/70 (46%), Gaps = 2/70 (2%)
#
# Query: 103 RLAAVTNKKSRNAARISSNGSFMPLQLQNAGVLTPEQITLLAVKETRKRQKKLFKKYNVP 162
# RL K+ + I SFMPL++ AGV+ P + L + T Q L + N+P
# Sbjct: 235 RLLVHYPKRQQGNRMIGGESSFMPLKINTAGVIPPIFASSLLLLPTTALQ--LVQTANLP 292
#
# Query: 163 LWKNALLPMV 172
# W + L MV
# Sbjct: 293 GWASWLPAMV 302
#
#
# >Ta0129
# Length = 1641
#
# Score = 32.7 bits (73), Expect = 0.64
# Identities = 28/95 (29%), Positives = 45/95 (46%), Gaps = 11/95 (11%)
#
# Query: 207 SSFDLSSPLVAMPLLAPILVGTLAVLN-------VELN-GRLMFSSSLSSQGIKTISRNS 258
# S+FD+S+P +A I++ V N + LN G ++FS SS ++ I
# Sbjct: 1550 SAFDISNPYIAYTQFGSIILAWHQVYNLNNTVFAMRLNMGTMLFSDFFSSPILQPI---P 1606
#
# Query: 259 TRVQEAMTSILNVSRLGCVVMLAMSSQAPFLLSLY 293
# QEA S L+V G + +A S+ P + +Y
# Sbjct: 1607 YLYQEACPSFLSVYNFGIPLEIATSNYNPENIEIY 1641
#
#
# >SPy1184
# Length = 373
#
# Score = 32.0 bits (71), Expect = 1.1
# Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
#
# Query: 216 VAMPLLAPILVGTLAVLNVELNGRLMFSSSLSSQGIKTISRNSTRVQEAMTSILNVSRLG 275
# + P++ ++ G +A +++ L G LMF + L G+ + R S Q + +I+++ LG
# Sbjct: 208 ILFPIIITLVAGFIAPISLPLVGFLMFGNLLRECGV--LDRLSQTAQNELVNIISI-LLG 264
#
# Query: 276 CVVMLAMSSQAPFLLSLYWISSQLFSLVQNII 307
# + + M QA L++ + +F L+ I+
# Sbjct: 265 LTISIKM--QADLFLNVQTLLIIVFGLLAFIM 294
#
#
# >APE1744
# Length = 290
#
# Score = 31.6 bits (70), Expect = 1.4
# Identities = 13/42 (30%), Positives = 26/42 (60%)
#
# Query: 113 RNAARISSNGSFMPLQLQNAGVLTPEQITLLAVKETRKRQKK 154
# R A + + S + L++++ G L PE+I LA++E ++ K+
# Sbjct: 236 RGAVEVRYDSSNLDLEVESTGALRPEKIVELAIRELEEKVKR 277
#
#
# >mll4175
# Length = 351
#
# Score = 31.2 bits (69), Expect = 1.9
# Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
#
# Query: 154 KLFKKYNVPLWKNALLPMVQIPLWVTVSMGIRTLTETQLIESFYPSWFSALGFSSFDLSS 213
# +L + + P W N LP+V I + + G+ L ++ES+ + ++LG S+ ++
# Sbjct: 3 RLEVRTSTPTWFNLALPLVAIAATLVLCSGLIALAGAGVLESYGVMFTASLG-DSYAITE 61
#
# Query: 214 PLVAMPLLAPILVGTLAV 231
# LV AP++ LAV
# Sbjct: 62 TLVR---AAPMIFTGLAV 76
#
#
# >VC1761
# Length = 202
#
# Score = 30.8 bits (68), Expect = 2.4
# Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
#
# Query: 97 TPIIKLRLAAVTNKKSRNAARISSNGSFMPLQLQNAGVLTPEQITLLAVKETRKRQKK 154
# TP K+ L+ VT K+ R + +G F+ +LTPEQ+ + +T R +
# Sbjct: 110 TPTFKIDLS-VTTKQGRTTLNYTVDGPFIRFSQNEQYLLTPEQLMVFIAHKTHVRSDR 166
#
#
# >SPy0351
# Length = 307
#
# Score = 30.0 bits (66), Expect = 4.1
# Identities = 11/35 (31%), Positives = 21/35 (59%)
#
# Query: 277 VVMLAMSSQAPFLLSLYWISSQLFSLVQNIILNWI 311
# ++M+ MS P + LYW+ FS++Q +I ++
# Sbjct: 216 IMMIFMSFSLPAGVGLYWLVGGFFSIIQQLITTYL 250
#
#
# >BH1169
# Length = 280
#
# Score = 29.6 bits (65), Expect = 5.4
# Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 19/163 (11%)
#
# Query: 146 KETRKRQKKLFKKYNVPLWKNALLPMVQIPLWVTVSMGIRTLTETQLIESFYPSWFSALG 205
# +E +K L++K+ V L +Q+P+ + I E +
# Sbjct: 115 QEMQKELLGLYQKHGVNPMAGCLPLFIQLPILMAFYFAIMRTEEIRYHT----------- 163
#
# Query: 206 FSSFDLSSPLVAMPLLAPILVGTLAVLNVELNGRLMFSSSLSSQGIKTISRNSTRVQEAM 265
# F FDL P +P +A I T + ++ + + S ++ + M
# Sbjct: 164 FLWFDLGQPDYILPFVAGIT--TYFQFKMTMSHQQQMQKTNPSDSDNPMANMMQMQMKVM 221
#
# Query: 266 TSILNVSRLGCVVMLAMSSQAPFLLSLYWISSQLFSLVQNIIL 308
# ++ V +++ +S P LSLYW+ +F ++Q +
# Sbjct: 222 LYVMPVM----IIIAGLS--LPSALSLYWVIGNIFMIIQTYFI 258
#
#
# >HI0936
# Length = 635
#
# Score = 29.3 bits (64), Expect = 7.1
# Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
#
# Query: 188 TETQLIESFYPSWFSALGFSSFDLSSPL---VAMPLLAPILVGTLAVLNV 234
# T + + +FYP F A+ + S + SP + P++ IL+ + VL++
# Sbjct: 363 TVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPIITAILILMVIVLSI 412
#
#
# >YMR200w
# Length = 256
#
# Score = 28.9 bits (63), Expect = 9.2
# Identities = 12/30 (40%), Positives = 19/30 (63%)
#
# Query: 227 GTLAVLNVELNGRLMFSSSLSSQGIKTISR 256
# GTL + +E++GR +FS + G+ T SR
# Sbjct: 108 GTLVLNPIEVDGRQLFSDPCNDDGVSTYSR 137
#
#
# >Cj0723c
# Length = 395
#
# Score = 28.9 bits (63), Expect = 9.2
# Identities = 12/53 (22%), Positives = 29/53 (54%)
#
# Query: 261 VQEAMTSILNVSRLGCVVMLAMSSQAPFLLSLYWISSQLFSLVQNIILNWIYP 313
# +++ M S++ G +++ + F + +WI++ +F+ +I+N IYP
# Sbjct: 131 IKDTMKSLILTLIFGFLILYTLLFCYDFFGTFWWIAAFIFAFCIIVIINLIYP 183
#
#
# >HI1680
# Length = 718
#
# Score = 28.9 bits (63), Expect = 9.2
# Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 2/39 (5%)
#
# Query: 202 SALGFSSFDLSSPLVAMPLLAPILVGTLAVLNVELNGRL 240
# +A+G FD+SS +MPL+ I+ G L L+ L GRL
# Sbjct: 22 AAVGIWFFDISSQ--SMPLILGIIAGGLVDLDNRLTGRL 58
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.323 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,680,991
Number of Sequences: 108091
Number of extensions: 551630
Number of successful extensions: 1653
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1645
Number of HSP's gapped (non-prelim): 16
length of query: 316
length of database: 33,061,072
effective HSP length: 106
effective length of query: 210
effective length of database: 21,603,426
effective search space: 4536719460
effective search space used: 4536719460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)