Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss642738	SC_JCM|AC069165.2_60929		fwd/T	A/G	atacagaaaatgaaagaaactagggtccat	tgagggaaaacccaatgtcaagtggcagct	07/27/00	10/10/03	83	Genomic			unknown
ss1135789	KWOK|OVLP-000804-387530		fwd/T	A/G	atacagaaaatgaaagaaactagggtccat	tgagggaaaacccaatgtcaagtggcagct	09/02/00	10/10/03	86	Genomic			99 %
ss2873330	TSC-CSHL|TSC0407279		fwd/T	A/G	atacagaaaatgaaagaaactagggtccat	tgagggaaaacccaatgtcaagtggcagct	01/03/01	10/25/06	92	Genomic			unknown
ss4918030	YUSUKE|IMS-JST085520		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	07/24/02	10/10/03	108	Genomic			unknown
ss5603047	RIKENSNPRC|ssj0000161		fwd/T	A/G	atacagaaaatgaaagaaactagggtccat	tgagggaaaacccaatgtcaagtggcagct	10/18/02	10/10/03	110	Genomic			unknown
ss5841362	SC_JCM|NT_005332.10_1830809		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	01/10/03	10/10/03	111	Genomic			unknown
ss14473041	WUGSC_SSAHASNP|chr2.NT_005403.14_19989313		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	11/05/03	11/22/03	119	Genomic			unknown
ss14742112	SC_SNP|NT_005403.14_19989313		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	11/12/03	11/22/03	119	Genomic			unknown
ss19416792	CSHL-HAPMAP|CSHL-HuDD-200402.chr2.NT_005403.14_19989313		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	02/20/04	03/04/04	120	Genomic			unknown
ss24628801	PERLEGEN|afd4541716		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	08/10/04	09/13/04	123	Genomic			unknown
ss24811568	SEQUENOM|sqnm198961		fwd/T	C/T	atacagaaaatgaaagaaactagggtccat	tgagggaaaacccaatgtcaagtggcagct	06/18/04	06/18/04	123	cDNA			unknown
ss35149225	SSAHASNP|TA-079.chr2_169605403		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	03/11/05		125	Genomic			unknown
ss44217469	ABI|hCV8813544		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	07/18/05	11/03/06	126	Genomic			unknown
ss75246711	ILLUMINA|ILMN_Human_1M_rs473351		fwd/T	A/G	atacagaaaatgaaagaaactagggtccat	tgagggaaaacccaatgtcaagtggcagct	08/28/07	08/29/07	129	Genomic			unknown
ss76869057	CGM_KYOTO|720434		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	09/12/07	09/12/07	129	cDNA			unknown
ss81921133	HGSV|Cor18555_SNV_20070510.chr2_169605403		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	11/27/07	12/01/07	130	Genomic			unknown
ss86353295	CNG|19489820		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	02/22/08	02/22/08	129	Genomic			unknown
ss91433407	BCMHGSC_JDW|JWB-1339844		rev/B	C/T	agctgccacttgacattgggttttccctca	atggaccctagtttctttcattttctgtat	02/26/08	03/01/08	129	Genomic			unknown

Fasta sequence   (Legend)

 TGGATCCCCC ATCAGTTGAC CCAATGCAAG AATCTCAGAC ACACATGACG CACCAGTTAC
 AGGGGTTGTT TTTAAAGAAA AAAACAATCC CAGCAGGAGG GATTGCTGGG ATTGTTTTTT
 CTTTAAAGAA GAATGTTAAT ATTTTACTTT TACAGTCATT TTCCTACATC GGAATCCAAG
 CTAATTTCTA ATGGCCTTCC ATAATAATTC TGCTTTAGAT GTGTATACAG AAAATGAAAG
 AAACTAGGGT CCAT
 N
 TGAGGGAAAA CCCAATGTCA AGTGGCAGCT CAGCCACCAC TCAGTGCTTC TCTGTGCAGG
 AGCCAGTCCT GATTAATATG TGGGAATTAG TGAGACATCA GGGAGTAAGT GACACTTTGA
 ACTCCTCAAG GACAGAGAAC TGTCTTTCAT TTTTGAACCC TCGGTGTACA CAGAGGCGGG
 TCTGTAACAG GCAATCAACA AACGTTTCTT GAGCTAGACC AAGGTCAGAT TTGAAAAGAA
 CAGAAGGACT GAAGACCAGC TGTGTTTCTT AACTAAATTT GTCTTTCAAG TGAAACCAGC
 TTCCTTCATC TCTAAGGCTA AGGATAGGGA AAGGGTGGAT GCTCTCAGGC TGAGGGAGGC
 AGAAAGGGAA AGTATTAGCA TGAGCTTTCC AGTTAGGGCT GTTGATTTAT GCTTTAACTT
 CAGAGTGAGT GTAGGGGTGG TGATGCTACC ATTACTGTGA GGACCTACCA GTGTGGCTGG
 AGCAGGGACT CTCTCCCAGG CCTTTTACTC CTCAGCACCT CCCTGCATAC TGATTGTTGT
 TTTTAGTTTC TGTGAAATTA TATTCATGAA ATGAAAATAG CGCATTTTAC TTTGCTGTAG
 TTTCATAAGG TTTTATACAA AAAAGCAAGT AAATATGGCA GAAAAGCACT CATTTGCCCC
 TGCTCCCTCA AAACACCACA GAATGACATA GAACTAAAGG CGGCAGGAAT CTACAAGAAT
 GAAGAAAACA CAGTGATGCT ACCTGCAAAA TCTTGGGAGC CAGAAAGCAA ATGGACAATT
 GATAATAGAG TTACAAGATG AGAGAAAACA AAAATGTAAC CTGTTAGTTG GGGGAGCCTA
 GAAACATCCT GTTTTGTACC ACAGACCCCT AGAAAGTTTC AAGATGTAAA AACACT

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_005403->NM_003742 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss24628801	AFD_EUR_PANEL	European	40	IG	0.300	0.400	0.300	0.371	0.500	0.500
	AFD_AFR_PANEL	African American	44	IG	0.091	0.545	0.364	0.403	0.364	0.636
	AFD_CHN_PANEL	Asian	42	IG		0.143	0.857	0.752	0.071	0.929
ss2873330	HapMap-CEU	European	120	IG	0.167	0.533	0.300	0.527	0.433	0.567
	HapMap-HCB	Asian	90	IG		0.089	0.911	1.000	0.044	0.956
	HapMap-JPT	Asian	90	IG		0.133	0.867	0.655	0.067	0.933
	HapMap-YRI	Sub-Saharan African	118	IG	0.034	0.441	0.525	0.251	0.254	0.746
ss44217469	AoD_African_American		90	AF					0.320	0.680
	AoD_Caucasian		92	AF					0.400	0.600
	AoD_Chinese		90	AF					0.010	0.990
	AoD_Japanese		90	AF					0.040	0.960
ss4918030	JBIC-allele		1452	AF					0.049	0.951

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN