Submitted SNP(ss) Details: ss699657

Submitted SNP(ss) Details: ss699657

Submitter
Handle	SC_JCM
Submitter SNP ID	AC024194.2_158476
RefSNP(rs#)	rs151191
Submitted Batch ID	19-JUL-2000b
Submitted Date	Jul 27, 2000
Publication Cited	[1] Clone overlap SNPs detected from the public human 06-July-2000 draft sequence
First entry to dbSNP	Jul 27 2000 12:00:00:000AM

Resource Links
GenBank Accession	AC024194 AF095725
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D
Submission report	view

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	Overlap_SNPs_by_SsahaSNP
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele
SNP Class	single base
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 3
Genotype Summary	population count: 3
Genotype Submission	individual count: 119
Haplotype	N.D.

Comment
seqversion:AC024194.2position:158476unfin_quality:90seqversion:AF095725.1position:17199

Fasta sequence (Legend)

 GAAACCTAAT AGGCTAGTGA GGCCTTGCCT GGCAGAGATC AGAGTGGGGG TCAGGTTCAG
 AGAGGCCACT TAATAACTGA AGCCTCTGGA CTTGGAGCCA ATTTTTCCTA GAAGCATTTT
 CTGATCCAGA CGAGGTCTCG AAGAGGCTGA GCTGTACTAC TGGCAGGCTC ATTGGCCTAG
 GAGGACATCA GTGGAACTCC
 R
 TCACTCTGGG CTGAATTATA TCATATAACC ACTAAAAAAA TTAAATTAGC AATTTAAAAT
 TTTCTCACAA AGAAAATCCC AGACCTAGAA GGTTTCAATG GTGAATCTGA TTAAAGAATT
 AAGAAATAAA TCATGGTTTT CTTGTGTCTT GATTTCCCCT CAGTTCAGTT CTGATTTTTG
 TTATTTCTCA TCTTCTGCTA

Submitted Frequency for ss699657

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Submission Batch	Submitter
SC_95_C - NORTH AMERICA	172	A=0.620	G=0.380	0.471 +/-0.025	TSC-SANGER-SC_95_C-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
SC_12_C - NORTH AMERICA	22	T=0.550	C=0.460	0.486 +/-0	TSC-SANGER-SC_12_C-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
SC_12_AA - NORTH AMERICA	16	T=0.690	C=0.310	0.428 +/-0.124	TSC-SANGER-SC_12_AA-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL

dbSNP summary of Genotypes for ss699657

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
SC_12_AA - NORTH AMERICA	16	16	A=0.688	G=0.312	A/A=0.500 A/G=0.375 G/G=0.125	Pr(chiSq=0.130,df=1) =0.752	Genotype Freq.
SC_12_C - NORTH AMERICA	12	12	A=0.583	G=0.417	A/A=0.500 G/G=0.333 A/G=0.167	Pr(chiSq=2.591,df=1) =0.150	Genotype Freq.

Submitted individual genotype for ss699657

Submitter:	TSC-CSHL	Batch:	TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE

Population ID -Class	Individual By Genotype
Population ID -Class	A/A	A/G	C/C	C/T				G/G	N/N	T/T
SC_95_C - NORTH AMERICA			CEPH1416.13	CEPH1408.11	CEPH1423.11	CEPH1420.01	CEPH1347.03		CEPH1331.12	CEPH1362.06	CEPH1340.02
			CEPH1340.10	CEPH1420.13	CEPH1334.02	CEPH1333.01	CEPH1346.12		CEPH1347.01	CEPH1408.10	CEPH1346.07
			CEPH1416.12	CEPH1333.12	CEPH1347.04	CEPH1334.03	CEPH1333.13		CEPH1341.14	CEPH1408.12	CEPH1420.09
			CEPH1331.15	CEPH1420.03	CEPH1340.06	CEPH1333.14	CEPH1331.08		CEPH1362.01	CEPH1416.07	CEPH1423.12
			CEPH1333.06	CEPH1334.13	CEPH1334.10	CEPH1334.04	CEPH1347.13		CEPH1423.02	CEPH1331.09	CEPH1416.11
			CEPH1334.11	CEPH1416.06	CEPH1423.01	CEPH1331.02	CEPH1334.12		CEPH1341.11	CEPH1362.14	CEPH1408.13
			CEPH1340.09	CEPH1340.04	CEPH1347.12	CEPH1423.13	CEPH1423.03		CEPH1333.11	CEPH1346.02	CEPH1346.08
			CEPH1333.07	CEPH1331.01	CEPH1340.12	CEPH1340.11	CEPH1416.02		CEPH1341.01	CEPH1408.01	CEPH1341.13
			CEPH1340.01	CEPH1420.10	CEPH1334.01	CEPH1362.16	CEPH1341.12		CEPH1346.11	CEPH1408.04	CEPH1420.02
			CEPH1420.11	CEPH1416.01	CEPH1347.02	CEPH1362.13				CEPH1341.10	CEPH1341.08
			CEPH1423.04							CEPH1408.05	CEPH1362.02
			CEPH1347.15							CEPH1423.14	CEPH1408.02
			CEPH1333.02							CEPH1331.13	CEPH1362.15
										CEPH1331.14	CEPH1346.01
										CEPH1416.14	CEPH1420.12
										CEPH1362.05	CEPH1346.13
										CEPH1347.14	CEPH1341.02
Sample(N): 95	0	0	13	39				0	9	34

Submitter:	TSC-CSHL	Batch:	TSC-SANGER-SC_12_C-Sep-18-2003-GENOTYPE

Population ID -Class	Individual By Genotype
Population ID -Class	A/A				A/G	C/C	C/T	G/G		N/N	T/T
SC_12_C - NORTH AMERICA	CEPH1347.04	CEPH1331.04	CEPH1331.03	CEPH1416.01	CEPH1347.03			CEPH1416.02	CEPH1347.05	CEPH1331.12
	CEPH1416.04				CEPH1347.02			CEPH1416.03	CEPH1331.05
Sample(N): 12	5				2	0	0	4		1	0

Submitter:	TSC-CSHL	Batch:	TSC-SANGER-SC_12_AA-Sep-18-2003-GENOTYPE

Population ID -Class	Individual By Genotype
Population ID -Class	A/A		A/G		C/C	C/T	G/G	N/N		T/T
SC_12_AA - NORTH AMERICA	NA17109	NA17111	NA17134	NA17117			NA17132	NA17115	NA17122
	NA17114	NA17124	NA17136					NA17119	NA17125
Sample(N): 12	4		3		0	0	1	4		0

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Revised: May 25, 2006 1:38 PM .