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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs1302679          
refSNP ID: rs1302679
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:87/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
NM_000926.3:c.1906+6292T>C
NT_033899.7:g.4518615A>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss1814746 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1302679 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss1814746KWOK|OVLP-000925-313196fwd/TA/Gtaagaggagagtttacagctctaaatgcctcctcaaaaagttagaaagatctcaaattaa10/05/0010/10/03123Genomic98 %
ss1814793KWOK|OVLP-000925-326521fwd/TA/Gtaagaggagagtttacagctctaaatgcctcctcaaaaagttagaaagatctcaaattaa10/05/0010/10/0387Genomic98 %
ss1814800KWOK|OVLP-000925-329276fwd/TA/Gtaagaggagagtttacagctctaaatgcctcctcaaaaagttagaaagatttcaaattaa10/05/0010/10/03123Genomic98 %
ss1827172KWOK|OVLP-000925-302703fwd/TA/Gtaagaggagagtttacagctctaaatgcctcctcaaaaagttagaaagatctcaaattaa10/05/0010/10/0387Genomic97 %
ss2648186SC_JCM|AP000638.2_61178fwd/TA/Gtaagaggagagtttacagctctaaatgcctcctcaaaaagttagaaagatctcaaattaa11/03/0010/10/03126Genomicunknown
ss2837023TSC-CSHL|TSC1017287rev/BC/Tttaatttgaaatctttctaactttttgaggaggcatttagagctgtaaactctcctctta01/03/0110/10/03123Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1302679|allelePos=5001|totalLen=5766|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=126
 gaaaaaaaaa agaaaaacta ctacccacat gaaaataagt acaaaaattt gaagtgccaa
 tgtctccaga tgagaagaaa ccagtgcaag aattctggca taatgaaaaa tctgattgca
 gtgacatcac taagggattg cactagcttt ccagcaatgg tccctaacca agatggaaac
 tcagaaatga cacataaata attcaaagca tggattgcaa ggaagttcat tgtaatcaaa
 gacaaggttg aaaaccaaca caaacttcta aagcaatcta ggaaattaag aaagacatga
 acatcttaaa aaaaatcaat agtagcttct ggaattgaaa aactcactta aagccttcaa
 ttatattttg aaattcgtta tcaatagact ggatcaagca gaagaaaaaa ttttaaagct
 tgaaggctgg tcttgtgaac taacccaatc tgataaaaat aaagaaaaaa attattttaa
 atgagctgtt tttgagaaat ataagattat ataaagcaaa aaaaccctat gaattattgg
 cattcctcag aaagtaggag aaaaagaaaa caaactggaa aatatagttg agggaataat
 tcaagaaaac tttcctaatc ttgctagaga gctagaaatc cagagaacat ctgtgagaca
 ccacaaacat gaacatcact ggctgggcgt ggtgactcat gtctgtaatc ccagcacttt
 gggaggctga ggcaggtgga tcatgaggtg aggagttcaa gaccagcctg gccaagacgg
 tgaaaccctg actctactaa aaatacaaaa aattagccag acacggtggc aggcacctgt
 aatcccagct actcgggagg ttgaggcagg agaatccatg gaacttggag ggcggaggtt
 gcagtgagcc aagatctcac cactgcactc cagcctgtgt gacacagtaa ggctccatct
 caaaaaaaaa aaaatcacca aggtatatag tcaccagaat gttcaaaggc aatattacag
 aaaaaatctt aaaggcagcc agagaaaagt gcagatcaca taaaaaggga actctatcag
 gataataaca gatttctcag cagaggtttg caagctagga gagattgggg gcctgttttc
 agcgttctta aaagaaattt caaccaagaa tttcacatcc tgccaaacta tgcttcataa
 gtgcaggaca aataaaatct tttccaggca atcaagtgct aaaggaattt gttaccacta
 gaccatcctt acaagagatc cttacatggg agttctaaac atggaagcaa aagaaccata
 cctgcttcca cataaacaca cttaagcaca tagcctgcac accctacaaa gcaaaaacac
 aatagaaaca acaaagcaaa cagctaacaa ctaaacaagg gatcaaaacc tcacatataa
 aaattaacct tgaacgtaaa tggtctaaat gcctgatatg gtttggttct gtgtcctcac
 ccaaatctca cgttgaattt taattcttaa tgtttgggga gggacctgat gggaggtgat
 tggatcatgg gggcacattt cccccatact gttgttgtga taatgagtga gctctcagga
 gatatgatgg tttaaaagtg gtggcacttc ccctctcact ctctctctct ctctctgctg
 ctctgccctg gtaagacgtg cttgcttccc atttgccttc caccatgatt gtaagtttcc
 tgagacctcc tagctatgct tcctgttaag cctgcagaac tgtgagtcag ttaaagttct
 tttcttcata aattacccag tctcaggtag ttctttataa cagtatgaga atgagctaat
 acagaaaatt ggtactggga gagtggagca cagttaagaa gatacctgaa aatgtgggag
 tgactttgga actgagtaat gggcagaggt tggaacagtt tgcagggctc agaagacaga
 aagatatggg aatgtttgga acttcctgga gacttgttga atggttgtga ccaaaatgct
 gatagtgaca tggacaatga gtctaggctt aggtggtctc agatggagtg aggaacttat
 tgggaactgg agtaaaggtc actcttgcta tgctttagca aaaagactgg tggcattttg
 cccctgtcct agagatctgt gaagctttga acttgagaga gatgatttgg ggtatctggt
 ggaaaaaatt tctaagcaac aaagcattcc agatgtatgt gacctggctg tttctaaaca
 tgtatgctca tatgcatgaa aaaagagatt atctgaacct ggaacttaca tttaaaagtg
 aagcaaagca aaaaatatat tggaatattt gtagcctggc catgtggtag aaaagagaga
 gacaaaaaaa catttcctgg ggagcaattc aagcctgctg cagaaatttg cattagtaaa
 gaggagtcaa atgttaacag tcaagacaat ggggaaaatg tctccagggc atttcagaga
 ccttcacagc agcccctccc atcacaggca cagaagccta agagggatta atggttttga
 gggccaggcc cagggcctag ctactctgtg cagccttggg acatggtgcc ctgcattcca
 gctgctccag ctccagctgt tgctaaaagg ggccaaggta cagcttgggc cagggcttca
 gaggatgcaa acccaaagcc ctggtggctt ccacatggta ttgggcctgc gggtatgaag
 aaggcaagag ttgaggtttg gaaacctcca cctagatttc agaggatgta tggaaatgcc
 tggatgtcca ggcagaagtc tgcttcaagc gcagagacct catggagaac ctctactagg
 acagtgtgaa agggaaatgt ggggttggag cccctgcaca gagttcccac tggggcactg
 cctagtggag ctgtgagaag aggaccacca tcaaccagac ctcagaatcg tagatccatc
 aacagcttgc attgtgtgcc tggaatacct gcaggcattc aatgccagcc tgtaaaagca
 gctgtggggg ctgtatcctg tagagccaca gggtggagct gctgaaggcc ttgggagccc
 atcccttgca tcagtatgct ctggatgtga ggcatggaga caaaagagat tattttggag
 ctttaatatt taatgactgc cctgctgggt tttgaacttg cttggggcct gtatctcctt
 tgttttggcc agttactccc atttaaaatg ggagtattta cccaatgccc atacccctat
 tgtatcttgg aagtaactaa cttgtttttg atattacaag atcataggtg gaagggactt
 gccttgtctc agacgagact ttggtcttgg acttttgggt taatgctgga atgagttaag
 actttggggg actgttggga aggcatgatt gtgttttgaa aactgagaag gacataagct
 ttgggagggg ccaggggcag aatgatatgg tttggctctg tatccccatc caaatctcac
 gttgaattgt aattcccaat gttgagggag gaacctggta ggaggttatt ggatcatgga
 ggcaaatttc ccccatgctg ttgtcatgat agtgagtggg ttctcccaag atataatgat
 ttaaaagtgt gtggcactcc cctgacccac ctctcctact ctgccatggt aagatattct
 tgcttcccct tcaccttctg ccttgattgt aagtttcctg acgttgccta gctatgcttc
 ctgttaagct tgtagaacta tgagtcattt aaatgtcatt tcttcataaa ttacccagtc
 tcaggtagta ctttatagca gcacaagaat ggactaatac aatgtcccat ttaaaagtca
 cagagtgggt ccaggcacag tggctcacac ctgtaatccc agaactttgg gaggctgagg
 cgggtggatc acctgagacc aggagttcaa gaccagcctg accaacaagg taaaacccca
 tctctactaa aaatacaaaa attagccagc cgtggtggca ggtgcatata atcccagcta
 ctccggaggc tgagacagga gaattgcttg aacctgggag gtggaggttg cagtgagctg
 agattgcgcc actgcactcc agcctgggca tcagagtaag actccatcta aaaaaaaaaa
 aaagtcacag agtggcaaac cagctaggaa aaccagactc atccatcttc tgtattcaag
 aaacccatct cacatgtaat gacaaccata ggctcaaagt aaagggttgg agaaagatgt
 agcatgcaaa cagaaaacaa aaaagagcag gggttgctat tcttagatta gataaaacag
 actttaacaa cagtaaaaaa ggaaaaataa gggcataacg ataaagagtt caataagaag
 atttaactat cctaaataca tacgccctca acactggcac acccagattc ataaaacaag
 gacttctaag gacctagaaa gccacacaac aatagtgggg gactgatagc attagatcat
 caaggcagaa gactaacaaa gaaattctgg acttaaactc aatgcttgtc caattggatc
 taataaacat ctacagaata atccacccat caaccacaga acgtaaattc ttctcatctg
 tacacagaac atatactcca agattcacca catccttggc cataaaccaa gactcagtac
 attttaaaaa gtcaaaatca tgccagtcat actgtcaggt cacagtggaa tacaaagaga
 aaccaacatc aagaagatct gtacaaacca cacaattaca tggaaattaa aaagtttgct
 ctggataact ttgagtaaac aataaaatca aggcagaaat aaaaaaaaat taaaataaat
 gaaaacagac acaacatacc aaaatctctg gaatgtagca aaaacaatat taagaggaga
 gtttacagct ctaaatgcct
 R
 cctcaaaaag ttagaaagat ctcaaattaa tgacctaaca tcacacctag aggaactaaa
 aaaaaaaaaa aaaaaaaaaa aacaagaaca accttcccct aaggctagca gaagaaaggg
 ccgacctaag gggcggaccc aattgaattt gggccccaaa attctttaca aggattcacc
 aaacccaaag gttttttttt taagggataa ataggattga tggcctgctg gctcctttac
 caaggaaaaa aggggggagg ttccaattaa ccccaaccgg aattgccaag ggtgccttcc
 cacctgttcc cccggaattt tgaaggttcc ttggataact tttgtgaccc cctctcccca
 cccaacctcc attttctggg ggaattgatt aattcccgga aaccacacat tgtcccaggt
 ttaattcggg aaaaacctaa ggcacggaac ggcccaatat ggggtcccaa tggatttggt
 attatatccc ttcccaacca aaaggaaggc cctgccagag agtttcacgg ctaaattcta
 ccggttgccc aaggtagagc tggtacaatt ctactgaacc tatttcaaaa atcgagaggg
 aagactctcc cctaactgtt ttctgaggca gtatcccctg atacaaaact gtagagttcc
 ctggagaggg aaacctttgg acatttccct gattacccgg gcccaatatt ctcacaaaca
 cttgcaaccc aatccaacTT CAGGTAATTT TCACGTTCGG GTGGT

  GeneView back to top
GeneView via analysis of contig annotation: PGR progesterone receptor
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_033899->NM_000926
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_033899->NM_000926->NP_0009174518615reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs1302679 maps exactly once on NCBI human chromosome 11
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
11NW_001838042.21979372896893281minusTalt_assembly_8HuRefHuRefview5000
11NW_925173.11099444798125547plusAalt_assembly_1CeleraCeleraview5000
11NT_033899.74518615100461409plusAref_assemblyreferencereferenceview5000

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AP001316.2 AP001316 AP001919 AP001919.2
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .