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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs151350          
refSNP ID: rs151350
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss8330827 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs151350 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss303704KWOK|OVLP-000621-332368fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg06/30/0010/10/0379Genomic97 %
ss305254KWOK|OVLP-000621-339812fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg06/30/0010/10/0379Genomic97 %
ss621716SC_JCM|AL109840.16_113975fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg07/12/0010/10/0380Genomicunknown
ss1270385KWOK|OVLP-000804-220233fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg09/02/0010/10/0386Genomic94 %
ss1655543KWOK|OVLP-000925-530490fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg10/05/0010/10/0387Genomic94 %
ss8330827SC_SNP|NT_011362.7_22644480fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg04/17/0310/10/03114Genomicunknown
ss10963165BCM_SSAHASNP|chr20.NT_011362.8_22644530fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg06/30/0310/10/03116Genomicunknown
ss14517933WUGSC_SSAHASNP|chr20.NT_011362.8_22644530fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg11/05/0311/22/03119Genomicunknown
ss16896736CSHL-HAPMAP|CSHL-HuAA-200402.chr20.NT_011362.8_22644530fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg02/17/0403/04/04120Genomicunknown
ss21780257SSAHASNP|WGSA-200403-chr20.chr20.NT_011362.8_22644530fwd/TC/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg03/20/0403/20/04121Genomicunknown
ss77140505HGSV|Cor12156_SNV_20070510.chr20_57025029fwd/C/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg10/09/0710/11/07129Genomicunknown
ss81663934HGSV|Cor18956_SNV_20070510.chr20_57025029fwd/C/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg11/30/0712/01/07130Genomicunknown
ss91742379BCMHGSC_JDW|JWB-1459154fwd/C/Gggcaggggcccctgggtggggagggaggctgggagagctggtggggacagagacaagggg02/26/0803/02/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs151350|allelePos=401|totalLen=801|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=130
 GGAATGGAGG AAAAAGGTGA CCCCACCTGG AGAAGGACAC ACTCGTGAAT AAATACATCA
 CTGGCTTTAA GAACACAGCC CGCTCTGAGC ATCACTGCTC AAACCTGCCC AGCTGTCAGT
 GTGCCCttaa caaacattta ctgaggccct gccatggatc aggcactttg gggactcaaa
 gatgaaacga cacaggcagc tcccaggctg gcggGAGATA AGGCATGTGT ATAAGTAATT
 AGCAAACAGG ACTGTGTGTG GGCACTGCAG GTTGAAGTGC TCTGGTCCCC AGGAGAGGAA
 GTGTCTCTGA TGAGGGACCT GCCTGTGGGA AGATCATGGA GCTGTCTTTG ATCTTCGGAG
 AAGTCTGGTA GGCAGGGGCC CCTGGGTGGG GAGGGAGGCT
 S
 GGGAGAGCTG GTGGGGACAG AGACAAGGGG AAAAGAGGCC AAGGCACGCC AGGAGAAAGG
 CTGGAAGTGA GGCAAGATGG GCTAATGTCT ATGGAAACAG AATGGTCTAT TCTTAATTTT
 AAAATGGTCT GTTTTAATTT CTGAAAAATA TTGCTGGGGA CCTATGAATA GGTCTGTTTT
 AATTTAAACA GATCATTAAT AAAATGGTCT GTTTTAATTT CTGAAAAATA CTGCTGAGGA
 CCTGTGAATA TCCTCCTCTT GAATTTGCAC ATTCTTCTCT TTACCTTTGG GCAGGGAGGA
 GGGGTGACTG GACCGGAAGC ATCTGTGAGT CATGTGACAT TCAGGTTTGA GCACAAAAAA
 GTTCCAAACT TAGAGAAATG TTACAAGGGT ATTAATCTTG

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs151350 maps exactly once on NCBI human chromosome 20
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
20NW_927339.12783516454332055plusGalt_assembly_1CeleraCeleraview400
20NW_001838667.2236126154378543minusCalt_assembly_8HuRefHuRefview400
20NT_011362.92264453057025029plusCref_assemblyreferencereferenceview400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011362 AC010102 AL109840.24 AL136532
dbSNP Blast Analysis
GenBank HTGS Finished:
AL109840.24

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .