prokMSA_id: 137037
prokMSAname: Yersinia pestis biovar Medievalis str. 91001
GenBank ACCESSION: AE017137.1
GenBank GI: 45437263
Pubmed/Medline: 15368893
RDP_id: S000498168
NCBI_tax_id: 229193
Study_id: 14654
Chimera Test Result
bellerophon=checked, not chimeric
bel3_div_ratio=
G2_chip_tax_string=Unclassified
Hugenholtz_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales_Enterobacteriaceae; Yersinia
Ludwig_tax_string=Unclassified
Pace_tax_string=Unclassified
RDP_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia
ncbi_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia
authors(alphabetically)=Chen,F., Cui,B., Dai,R., Du,Z., Guo,Z., Han,Y., Huang,P., Jin,L., Li,M., Li,S., Lin,W., Pang,X., Pei,D., Qi,Z., Qin,H., Song,Y., Tong,Z., Wang,J., Wang,L., Yang,H., Yang,R., Ye,C., Yu,J., Zhai,J., Zhang,J., Zhou,D.
blast_perc_ident_to_template=87.7
chi_checked=1
contact_info=The Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, No. 20, Dongdajie Street, Fengtai District, Beijing 100071, People's Republic of China
create_date=15-MAR-2004
decision=named_isolate
description=Yersinia pestis biovar Medievalis str. 91001 section 11 of 16 of the complete genome
journal=DNA Res. 11 (3), 179-197 (2004)
longest_insertion=1
ncbi_acc=AE017137
non_ACGT_percent=0.0000
note=biovar: Medievalis
organism=Yersinia pestis biovar Medievalis str. 91001
perc_ident_to_invariant_core=98.9
prokMSA_id=137037
prokMSAname=Yersinia pestis biovar Medievalis str. 91001
small_gap_intrusions=1
source=Yersinia pestis biovar Medievalis str. 91001
span_aligned=complement(178766..180352)
strain=91001
submit_date=24-APR-2003
template=8180
timestamp=20060323215930
title=Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans
unaligned_length=1587
update_date=09-DEC-2004
>Yersinia pestis biovar Medievalis str. 91001 prokMSA_id:137037 AE017137.1
TAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCT
AACACATGCAAGTCGAGCGGCAGCGGGAAGTAGTTTACTACTTTGCCGGC
GAGCGGCGGACGGGTGAGTAATGTCTGGGGATCTGCCTGATGGAGGGGGA
TAACTACTGGAAACGGTAGCTAATACCGCATGACCTCGCAAGAGCAAAGT
GGGGGACCTTAGGGCCTCACGCCATCGGATGAACCCAGATGGGATTAGCT
AGTAGGTGGGGTAATGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAG
AGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGA
GGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATG
CCGCGTGTGTGAAGAAGGCCTTCGGGTTGTAAAGCACTTTCAGCGAGGAG
GAAGGGGTTGAGTTTAATACGCTCAATCATTGACGTTACTCGCAGAAGAA
GCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGC
GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTC
AGATGTGAAATCCCCGCGCTTAACGTGGGAACTGCATTTGAAACTGGCAA
GCTAGAGTCTTGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGC
GTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACAAAGA
CTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG
GTAGTCCACGCTGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCG
TGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGC
AAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCA
TGTGGTTTAATTCGATGCAACGCGAAGAACCTTACATACTCTTGACATCC
ACAGAATTTGGCAGAGATGCTAAAGTGCCTTCGGGAACTGTGAGACAGGT
GCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCG
CAACGAGCGCAACCCTTATCCTTTGTTGCCAGCACGTAATGGTGGGAACT
CAAGGGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAG
TCATCATGGCCCTTACGAGTAGGGCTACACACGTGCTACAATGGCAGATA
CAAAGTGAAGCGAACTCGCGAGAGCCAGCGGACCACATAAAGTCTGTCGT
AGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGT
AATCGTAGATCAGAATGCTACGGTGAATACGTTCCCGGGCCTTGTACACA
CCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAAC
CTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGT
AACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTAAC
GATACGCATTGCGCAGTGCCCACACAGATTGTCTGAT
>Yersinia pestis biovar Medievalis str. 91001 prokMSA_id:137037 AE017137.1
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.AAATTGAAGAGTTT-GA--T-CA-T-G-GCTC-AG-AT-TGAA-C-GC-
-TGG-C--G-GC-A-GG--C----C-T--AACACA-T-GC-A-AGT-CGA
-G-CG----------G-CAG-CG-G-------------------------
---GAAG-T-AG--------------------------------------
--------------TTT-A-------------------------------
--------------------------------------------------
-CTA-CTTT----------------G-CC--G--GC--G--AG-C-GG-C
-GG-A--C-------------GGG-TGAGT-A--AT-GT-C-T-G-GG--
-G-A--T-CT-G--C-C-TGA--TG-G-----------------------
-------------------------------------------A-GG---
-GGG-AT-AA-CTA-------------------------C-T-G------
-----------------GAA-A---CGG-TAG-CTAA-TA---CC-G--C
-AT-G----------A--------------------C-------------
------------------------CT-C----------------------
--------------------------------------------------
-----------------------------------------------G-C
A-A-----------------------------------------------
--------------------------------------------------
-------------------------------------G-A-G--------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------------CAAA--G-T-G-GG-----G--G
A-C--C--------------------------------------------
--------------------------------------------------
----------------------TTA-G-----------------------
--------------------------------------------------
---------------------------------------------G-G--
CC-TC--A---C-G--------------C----C-A---T-CG-G---AT
---G-A-----A-CCC-AGA--T-GGG--A------TT--A--G-CT-A-
---G---TAGG-T-G-GG-G-T----AAT-GG-C-T-C-ACCT--A-GG-
C-G--A-CG-A------------TCC-C-T------AG-CT-G-G-TCT-
G-AG----A--GG-AT--G-AC-C-AG-CCAC-A-CTGGA--A-C-TG-A
-GA-C-AC-G-G-TCCAGA-CTCC-TAC-G--G-G-A-G-GC-A-GC-A-
G-TG---GG-G-A-ATA-TTGCA-C-AA-T-GG--GC-GC-A----A-G-
CC-T-GA-TG-CA-GCCA-TGCC-G-CG-T---G-T-G--T--GA-A-G-
-A--A-G-G-CC-----TT-CG---------G-G-T-T-G-T--A---AA
-G-CAC--------TT-TC-A-G--C-GAG----GA-G--G---AA-GGG
G---TTGA-GT----T--T--AA-T---A----C-----GC-T-CAA-TC
A-TT-GA-CG-TT-A-C-TC-G-CA-G---------AA-----------G
AAGC-ACC-GG-C-TAA---C--T-CCGT--GCCA--G-C---A--GCCG
---C-GG--TA-AT--AC---GG-AG-GGT-GCA-A-G-CG-TTAA-T-C
GG-AA-TT-A--C-T--GGGC-GTA----AA-GCGC-AC--G-CA-G-G-
C-G------------G--T-TT-G-T-T-AA----G-T-C-A---G-ATG
-TG-A-AA-TC--CC-CGC-G-----------------------------
---------------------------------------CT-T-AA----
--------------------------------------------------
-------------------CG-T-G-GG-AA-C----T-G-C-A-T-T--
------T--GA-A-A-C-T-G-GCA--A-G-C------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------T-A-G-A-G-T-C-----T-TG--TA-G-
A------------G-GG-G-GG-T----AG--AATT-CCA-G-GT--GT-
A-GCG-GTGAAA-TG-CGT-AGAG-A-TC-T-GGA--GG-A-AT-A-CC-
GG--T--G--GC-GAA-G--G-C---G----G--C-C-CCCTG------G
-AC-AA--------------------------------------------
------------------AG-A-C-T--GA--CG-----CT-CA-GG--T
-G-CGA--AA-G-C--------------G-TGGG-GAG-C-A-AACA--G
G-ATTA-G-ATA-C-----CC-T-G-GTA-G-T----C-CA--C-G-CTG
-T-AAA--C-GATG-TC--GA-CT---------T-GG--A--G-G-TT-G
-TG-C--C------------------------------------------
--------------------------------------------CTT-GA
--------------------------------------------------
--------------------------------------------------
----------------------------------------------G-G-
C-GT--G-G-C-T-TC-C------GG--A----GC-TAA--CG-C-G-T-
-T--AA-GT--C----G-ACC-GCC-T-G-GG-GAG-TA---CGG-----
C-C--G-C-A-A-GGT-T--AAA-ACTC-AAA---------TGAA-TTG-
ACGGG-G-G-CCCG----C-A--C-A-A-GCG-GT-G--G--AG-CA-T-
-GT-GGT-TT-AATT-C-G-ATG-CAAC-G-CG-A-AG-A-A-CC-TT-A
-CA-TACTC-TT-G-AC-A-T-C--------------CAC-A-G------
-------A-AT-T-T-G--GC--A-GA-G-A-T--G-C-T--A-A-A-G-
-T-G-----CC-------------------------------------T-
-TC-G------------------------------------------GG-
---A----A---CT-GTG---A--GA------------------------
---------------------------C-A-G-G-T-GCTG-CA-TGG-C
T--GTC-GTC-A-GC-TC---G-TG-TT-G--TGA-AA-TGT-T-GG-G-
TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC-C-T-TA--T
C--C-TTTG--T-T-G-C-C---AG-C-A----CG---------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
----------------TAA-------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-----------------------------TG---G----T-G--------
----G----G---A-A--CT---------------C-A-A-G-G-GA-G-
-AC-T-G-CCG--G-T----------------------------------
--G-A---CAA----------------------------------A-C-C
-G--G-A-GG-A--AGG-T--GGGG-A-TGAC-GTC--AAGT-C---ATC
-A-T-G-G-C-C-CTT----AC-G--AG-T-A-GG-GC-TA-CAC-ACGT
G-C--TA--CAATG---G-CAGA-T-A--C-AAA-GT-GA----------
--------------------------------------------------
--------------------------------------A-G-C-G-A--A
-CTCG-C--G---------------------------------------A
-GA-G-C-----------C--A-G-CG---G----------A--CCA-C-
-----A-T-AAAGT-CT-G-T-C-G-TAG-TCC--------GGA-T-TGG
AG-TC--T-GCAA-CT-C--------------------------------
--------------------------------------------------
---------------G-ACTCC-A-T-G-AA-G-TC-GGAAT-CG-C-TA
--G-TA-AT-C-G-T----AGA-TC-A-G--A------AT--GCT-AC-G
-GT-G-AAT-ACGT-T-CCCGGGCCT-TGTA----CACACCG-CCC-GTC
-----A---CA--CCA-TG-GG-A--G---TGG-G-TT-GC-AAA--A-G
AA------G--T-AGG-TA-G-C-T-T-AA-C-C----------------
-----------------------------------------------TT-
C-------------------------------------------------
--------------------------------------------------
G--GG-A--GG-G--C---GC-TTA--CC--ACT-T----T-GTG-AT-T
CA------------------------TG--ACT-GGGG-TG-AAG-TCGT
AACAA-GGTAA-CCGT-AGGGGAA-CCTG-CGGT-TGGATCACCTCCTTA
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