R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|1173351|sp|P42552|S1FA_SPIOL DNA BINDING PROTEIN S1FA
>gi|629495|pir||S47063 s1Fa protein - spinach
>gi|1361972|pir||S54730 s1Fa protein - spinach
>gi|498705|emb|CAA56077.1| (X79543) s1Fa [Spinacia oleracea]
Length = 70
Frame 3 hits (HSPs): __________________
Frame 2 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Plus Strand HSPs:
Score = 179 (63.0 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 33/57 (57%), Positives = 45/57 (78%), Frame = +2
Query: 122 SKGFNPALIVLLLVGGLLLTFLIGNYVLYTYAQKTLPPXKKEASLKEEDEKGETEAG 292
+KG NP LIVLL++GGLLLTFL+GN++LYTYAQK LPP KK+ K++ ++ + G
Sbjct: 8 AKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLKQG 64
Score = 108 (38.0 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%), Frame = +3
Query: 240 KKKPVSKKKMKKERLKQGVSAPGE 311
KKKP+SKKKMK+ERLKQGV+ PGE
Sbjct: 47 KKKPISKKKMKRERLKQGVAPPGE 70
>gi|4371289|gb|AAD18147.1| (AC006260) unknown protein [Arabidopsis thaliana]
Length = 76
Frame 3 hits (HSPs): _____________________________________
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 32/57 (56%), Positives = 44/57 (77%), Frame = +2
Query: 122 SKGFNPALIVLLLVGGLLLTFLIGNYVLYTYAQKTLPPXKKEASLKEEDEKGETEAG 292
+KG NP LIVLL++GGLL+TFLI NYV+Y YAQK LPP KK+ K++ ++ + + G
Sbjct: 14 AKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQG 70
Score = 105 (37.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 25/56 (44%), Positives = 36/56 (64%), Frame = +3
Query: 147 LFSCLLVGCC*HSSLETMYSTHMHRRPSLL-XKKKPVSKKKMKKERLKQGVSAPGE 311
L L++G + L Y +M+ + +L KKKP+SKKK+K+E+LKQGV PGE
Sbjct: 21 LIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVPVPGE 76
>gi|1173348|sp|P42551|S1FA_ARATH DNA BINDING PROTEIN S1FA
Length = 76
Frame 3 hits (HSPs): ________________
Frame 2 hits (HSPs): _______________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
__________________
Annotated Domains:
DOMO DM04705: 1..75
PRODOM PD019013: S1FA(2) Q42337(1) Q9ZQC9(1) 8..48
PRODOM PD026675: S1FA(2) 50..75
__________________
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 34/59 (57%), Positives = 43/59 (72%), Frame = +2
Query: 116 AGSKGFNPALIVLLLVGGLLLTFLIGNYVLYTYAQKTLPPXKKEASLKEEDEKGETEAG 292
A +KG NP LIVLL+VGG LL FLI NYVLY YAQK LPP KK+ K++ ++ + + G
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQG 70
Score = 102 (35.9 bits), Expect = 0.00012, P = 0.00012
Identities = 19/24 (79%), Positives = 22/24 (91%), Frame = +3
Query: 240 KKKPVSKKKMKKERLKQGVSAPGE 311
KKKPVSKKK+K+E+LKQGV PGE
Sbjct: 53 KKKPVSKKKLKREKLKQGVPVPGE 76
>gi|11357802|pir||T45877 hypothetical protein F4P12.70 - Arabidopsis thaliana
>gi|6729488|emb|CAB67644.1| (AL132966) hypothetical protein
[Arabidopsis thaliana]
Length = 76
Frame 3 hits (HSPs): ________________
Frame 2 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 34/59 (57%), Positives = 43/59 (72%), Frame = +2
Query: 116 AGSKGFNPALIVLLLVGGLLLTFLIGNYVLYTYAQKTLPPXKKEASLKEEDEKGETEAG 292
A +KG NP LIVLL+VGG LL FLI NYVLY YAQK LPP KK+ K++ ++ + + G
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQG 70
Score = 102 (35.9 bits), Expect = 0.00012, P = 0.00012
Identities = 19/24 (79%), Positives = 22/24 (91%), Frame = +3
Query: 240 KKKPVSKKKMKKERLKQGVSAPGE 311
KKKPVSKKK+K+E+LKQGV PGE
Sbjct: 53 KKKPVSKKKLKREKLKQGVPVPGE 76
>gi|1173349|sp|P42554|S1FA_MAIZE DNA BINDING PROTEIN S1FA
Length = 63
Frame 3 hits (HSPs): _______________________________
Frame 2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | | 63
0 20 40 60
Plus Strand HSPs:
Score = 150 (52.8 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 28/57 (49%), Positives = 39/57 (68%), Frame = +2
Query: 122 SKGFNPALIVLLLVGGLLLTFLIGNYVLYTYAQKTLPPXKKEASLKEEDEKGETEAG 292
+KG NP ++V L+V LL F +GNY LY YAQKTLPP KK+ K++ +K + + G
Sbjct: 1 NKGLNPGMVVXLVVASFLLIFFVGNYALYXYAQKTLPPKKKKPVSKKKLKKEKLKQG 57
Score = 115 (40.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 24/38 (63%), Positives = 31/38 (81%), Frame = +3
Query: 201 YSTHMHRRPSLL-XKKKPVSKKKMKKERLKQGVSAPGE 311
Y+ + + + +L KKKPVSKKK+KKE+LKQGVSAPGE
Sbjct: 26 YALYXYAQKTLPPKKKKPVSKKKLKKEKLKQGVSAPGE 63
>gi|1173350|sp|P42553|S1FA_ORYSA DNA BINDING PROTEIN S1FA
Length = 76
Frame 3 hits (HSPs): _________________________
Frame 2 hits (HSPs): ______________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
__________________
Annotated Domains:
DOMO DM04705: 1..75
PRODOM PD019013: S1FA(2) Q42337(1) Q9ZQC9(1) 15..48
PRODOM PD026675: S1FA(2) 50..75
__________________
Plus Strand HSPs:
Score = 149 (52.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 29/57 (50%), Positives = 40/57 (70%), Frame = +2
Query: 122 SKGFNPALIVLLLVGGLLLTFLIGNYVLYTYAQKTLPPXKKEASLKEEDEKGETEAG 292
+KG NP IVLL+V LL+ F +GNY LY YAQKTLPP KK+ K++ ++ + + G
Sbjct: 14 NKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQG 70
Score = 118 (41.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/38 (63%), Positives = 32/38 (84%), Frame = +3
Query: 201 YSTHMHRRPSLL-XKKKPVSKKKMKKERLKQGVSAPGE 311
Y+ +M+ + +L KKKPVSKKK+K+E+LKQGVSAPGE
Sbjct: 39 YALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE 76
>gi|131035|sp|P08433|PRT1_SCYCA PROTAMINE Z1 (SCYLLIORHININE Z1)
>gi|85457|pir||S00016 protamine Z1 - smaller spotted catshark
>gi|64303|emb|CAA29099.1| (X05611) protamine Z1 (AA 1-51)
[Scyliorhinus canicula]
Length = 51
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 51
0 20 40
__________________
Annotated Domains:
PRODOM PD050534: PRT1_SCYCA 1..49
__________________
Plus Strand HSPs:
Score = 41 (14.4 bits), Expect = 2.0, Sum P(2) = 0.86
Identities = 7/16 (43%), Positives = 12/16 (75%), Frame = +1
Query: 85 RRQSPSFLRSRGFKRV 132
++Q+P FLR R +R+
Sbjct: 8 KKQAPCFLRRRHLRRL 23
Score = 38 (13.4 bits), Expect = 2.0, Sum P(2) = 0.86
Identities = 8/25 (32%), Positives = 13/25 (52%), Frame = +1
Query: 205 LHICTEDPPSXKKRSQSQRRR*KRR 279
L++C D +R + RR K+R
Sbjct: 23 LNVCKRDTSKTYRRRRHVRRLPKKR 47
>gi|225668|prf||1310226A scyliorhinine Z1 [Scyliorhinus canicula]
Length = 50
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | 50
0 20 40
Plus Strand HSPs:
Score = 41 (14.4 bits), Expect = 2.0, Sum P(2) = 0.86
Identities = 7/16 (43%), Positives = 12/16 (75%), Frame = +1
Query: 85 RRQSPSFLRSRGFKRV 132
++Q+P FLR R +R+
Sbjct: 7 KKQAPCFLRRRHLRRL 22
Score = 38 (13.4 bits), Expect = 2.0, Sum P(2) = 0.86
Identities = 8/25 (32%), Positives = 13/25 (52%), Frame = +1
Query: 205 LHICTEDPPSXKKRSQSQRRR*KRR 279
L++C D +R + RR K+R
Sbjct: 22 LNVCKRDTSKTYRRRRHVRRLPKKR 46
>gi|1899127|gb|AAC57008.1| (U86779) pol protein [Human immunodeficiency virus
type 1]
Length = 69
Frame -1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 4.6, P = 0.99
Identities = 14/36 (38%), Positives = 19/36 (52%), Frame = -1
Query: 195 FPMRNVNSNPPTSRRTIKAGLNPFEPARSKEGGTLS 88
FP +N PTSR+ G NP A ++ GTL+
Sbjct: 16 FPTEQARANSPTSRKLQVRGDNPRSEAGAEGQGTLN 51
>gi|1041721|gb|AAC49087.1| (U32307) Ras1p [Saccharomyces cerevisiae]
Length = 65
Frame -1 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 65
0 20 40 60
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 6.0, P = 1.0
Identities = 14/59 (23%), Positives = 27/59 (45%), Frame = -1
Query: 177 NSNPPTSRRTIKAGLNPFEPARSKEGGTLSANSKSSAMDERRXGTDLRXEESR-CSFLC 4
N+N ++ + N + +R + L++ SK SA ++ + R E S C +C
Sbjct: 7 NNNEGNTKYSSNGNGNRSDISRGNQNNALNSRSKQSAEPQKNSSANARKESSGGCCIIC 65
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.336 0.146 0.467
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.331 0.146 0.470
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.360 0.157 0.582
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.338 0.143 0.453
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.347 0.152 0.514
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.351 0.159 0.554
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 154 141 10. 73 3 12 22 0.12 33
30 0.11 36
+2 0 154 143 10. 73 3 12 22 0.12 33
30 0.11 36
+1 0 155 144 10. 73 3 12 22 0.12 33
30 0.11 36
-1 0 155 143 10. 73 3 12 22 0.12 33
30 0.11 36
-2 0 154 143 10. 73 3 12 22 0.12 33
30 0.11 36
-3 0 154 143 10. 73 3 12 22 0.12 33
30 0.11 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 10
No. of states in DFA: 589 (58 KB)
Total size of DFA: 165 KB (192 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 138.00u 1.33s 139.33t Elapsed: 00:00:39
Total cpu time: 138.02u 1.36s 139.38t Elapsed: 00:00:39
Start: Wed Jan 16 18:26:25 2002 End: Wed Jan 16 18:27:04 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000