R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|4581119|gb|AAD24609.1|AC005825_16 (AC005825) hypothetical protein
[Arabidopsis thaliana]
Length = 327
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 327
0 150 300
Plus Strand HSPs:
Score = 303 (106.7 bits), Expect = 5.8e-26, P = 5.8e-26
Identities = 68/127 (53%), Positives = 91/127 (71%), Frame = +2
Query: 17 AFCSPKFLS-LLLLLSAIPIGIIVTLERAKPATHVYHYHSNGWFRXCAKWDSHNRRFIVS 193
+FCS + + L L++SA+PI +++LE A P+THV+ Y S+G+FR CAKWD RRF+VS
Sbjct: 4 SFCSGRCTAALFLVISAVPIAYLISLELAVPSTHVFSYQSSGFFRECAKWDDVGRRFLVS 63
Query: 194 FFEGG-LGQVLLPEKDYESSPPLEEVTVVKXTHLAGNASLGIAIDAPRNRVLXVNADVXS 370
F +GG +G+++ P KD S LEEVT+VK LAGNASLGIAID RNR+L AD+
Sbjct: 64 FMDGGGVGEIV-P-KD--SDDVLEEVTLVKDVDLAGNASLGIAIDHVRNRLLVAVADLLG 119
Query: 371 VIRYGALCS 397
RY AL +
Sbjct: 120 N-RYSALAA 127
>gi|2275215|gb|AAB63837.1| (AC002337) hypothetical protein [Arabidopsis
thaliana]
Length = 330
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 330
0 150 300
Plus Strand HSPs:
Score = 273 (96.1 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 62/123 (50%), Positives = 82/123 (66%), Frame = +2
Query: 23 CSPKFLSLLL--LLSAIPIGIIVTLERAKPATHVYHYHSNGWFRXCAKWDSHNRRFIVSF 196
CS K+ L +LSA+PI I++ E+A P+THV YHS+G+ R CAKWD RRF+VS+
Sbjct: 6 CSGKYSVALFFFILSAVPIAYIISSEKAVPSTHVISYHSSGFLRECAKWDDVGRRFLVSY 65
Query: 197 FEGG--LGQVLLPEKDYESSPPLEEVTVVKXTHLAGNASLGIAIDAPRNRVLXVNADVXS 370
+GG +G+ L+P KD S L+EVT+VK LAGN+S G ID RNR+L D+
Sbjct: 66 MDGGGGIGE-LVPTKD--SDDVLKEVTLVKDVDLAGNSSNGFVIDRHRNRLLLAVGDLLG 122
Query: 371 VIRYGAL 391
RY AL
Sbjct: 123 N-RYSAL 128
>gi|2143796|pir||I65198 homeotic protein Hox A4 - rat (fragment)
>gi|204646|gb|AAA67845.1| (L03557) hox1.4 protein [Rattus
norvegicus]
Length = 85
Frame -1 hits (HSPs): ________________________________________
Annotated Domains: ______________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
__________________
Annotated Domains:
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 13..36
__________________
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 2.0, P = 0.86
Identities = 18/72 (25%), Positives = 30/72 (41%), Frame = -1
Query: 431 KKRXFQVGEIICCKARRIGLPNXRQR*RXGLDF*VRQWRCPRRHFRPSGXL*PP*LPPTA 252
++R ++ +C R++ + +R + D + P R S P PP
Sbjct: 7 RRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDH-----KLPNTKMRSSNPASAPAGPPGK 61
Query: 251 AMTHNPSPAAKP 216
A THNP P + P
Sbjct: 62 AQTHNPHPHSHP 73
>gi|11346533|pir||T44657 protein GP80 [imported] - bovine herpesvirus 4
>gi|1834361|emb|CAB06616.1| (Z84818) GP80 [Bovine herpesvirus 4]
Length = 273
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 2.7, P = 0.93
Identities = 28/68 (41%), Positives = 36/68 (52%), Frame = +3
Query: 6 SLTWLSVLQNSSAS-SSYSLPYPSESS------SL*SEPNPPPTSTTTTVTAG-SXNAPS 161
++T S +S+AS SS S P PS SS S S P PT+TTTT T+ S N S
Sbjct: 45 TVTSTSTSTSSNASTSSVSSPSPSSSSVPSTATSSSSSPTSTPTATTTTATSSTSTNTTS 104
Query: 162 GILITAAS 185
+ T +S
Sbjct: 105 SVSTTVSS 112
Score = 82 (28.9 bits), Expect = 3.5, P = 0.97
Identities = 22/51 (43%), Positives = 30/51 (58%), Frame = +3
Query: 33 NSSASSSYSLPYPSESSSL*SEPNPPPTSTTTTVTAG-SXNAPSGILITAAS 185
+S + SS S+P + SSS S P PT+TTTT T+ S N S + T +S
Sbjct: 63 SSPSPSSSSVPSTATSSS--SSPTSTPTATTTTATSSTSTNTTSSVSTTVSS 112
>gi|1019443|gb|AAC46905.1| (U32572) mucin [Trypanosoma cruzi]
>gi|1585303|prf||2124391A mucin-like protein [Trypanosoma cruzi]
Length = 78
Frame 3 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 2.7, P = 0.93
Identities = 18/54 (33%), Positives = 32/54 (59%), Frame = +3
Query: 21 SVLQNSSASSSYSLPYPSESSSL*SEP--------NPPPTSTTTTVTAGSXNAPS 161
SV QN++ +++ + P P+ +++ ++P PPT+TTTT T + APS
Sbjct: 24 SVSQNNTTTTTTTKP-PTTTTTTTTKPPTTTTTTTTKPPTTTTTTTTTTAPEAPS 77
>gi|6321759 ref|NP_011835.1| Putative integral membrane protein containing
novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3;
Wsc4p [Saccharomyces cerevisiae] >gi|731607|sp|P38739|YHC8_YEAST
HYPOTHETICAL 63.8 KD PROTEIN IN GUT1-RIM1 INTERGENIC REGION
PRECURSOR >gi|626575|pir||S48940 hypothetical protein YHL028w -
yeast (Saccharomyces cerevisiae) >gi|2289857|gb|AAB65040.1|
(U11583) Similiar to mucin and several other Ser-Thr-rich proteins
[Saccharomyces cerevisiae]
Length = 605
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | || 605
0 150 300 450 600
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 3.6, P = 0.97
Identities = 24/56 (42%), Positives = 30/56 (53%), Frame = +3
Query: 18 LSVLQNSSASSSYSLPYPSESSSL*SEPNPPPTSTTTTVTAGSXNAPSGILITAAS 185
+S SS S+S S P+ SS+ S N PTSTT T T+ S APS +T S
Sbjct: 251 ISTSTTSSTSTSTSTTSPTSSSAPTSSSNTTPTSTTFTTTSPST-APSSTTVTYTS 305
>gi|1582765|prf||2119294A YFW1 gene [Saccharomyces cerevisiae]
Length = 605
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | || 605
0 150 300 450 600
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 3.6, P = 0.97
Identities = 24/56 (42%), Positives = 30/56 (53%), Frame = +3
Query: 18 LSVLQNSSASSSYSLPYPSESSSL*SEPNPPPTSTTTTVTAGSXNAPSGILITAAS 185
+S SS S+S S P+ SS+ S N PTSTT T T+ S APS +T S
Sbjct: 251 ISTSTTSSTSTSTSTTSPTSSSAPTSSSNTTPTSTTFTTTSPST-APSSTTVTYTS 305
>gi|881439|gb|AAA68946.1| (U27588) immunoreactive protein [Ajellomyces
capsulatus]
Length = 211
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 211
0 50 100 150 200
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 16/40 (40%), Positives = 24/40 (60%), Frame = +3
Query: 96 EPN-PPPTSTTTTVTAGSXNAPSGILITAASLFPSSKVVLV 215
E N PPPT+TTTT T P+ I I + P++K +++
Sbjct: 33 ESNCPPPTTTTTTTTTTPTPTPTSI-IPITPIVPANKTIVL 72
Score = 40 (14.1 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 8/17 (47%), Positives = 10/17 (58%), Frame = +2
Query: 23 CSPKFLSLLLLLSAIPI 73
C P + LL LSAI +
Sbjct: 5 CLPAYFKLLSFLSAIAV 21
>gi|1869816|emb|CAA68061.1| (X99721) transcription factor TFE3 [Homo sapiens]
Length = 219
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 4.2, P = 0.98
Identities = 38/135 (28%), Positives = 66/135 (48%), Frame = +3
Query: 21 SVLQNSSASSSYSLPYPSESS---SL*SEPNPPPTSTTTTVTAGSXNAPSGILITAASLF 191
+VL S S P P SS SL + P P T + ++ +AG P+ ++++S
Sbjct: 57 NVLDPDSFYELKSQPLPLRSSLPISLQATPATPATLSASS-SAGGSRTPA---MSSSS-- 110
Query: 192 PSSKVVLVRFCCRRRIMSHRRRWRKSRWSKXPTWPEMPPWASP-LTHLEIESSSLTLTXI 368
SS+V+L + R + RR R+ + + P +P P ASP ++ + + + TL+
Sbjct: 111 -SSRVLLRQQLMRAQAQEQERRERREQAAAAP-FPSPAP-ASPAISVVGVSAGGHTLSRP 167
Query: 369 R*SDTARFAAYYLSHLESP 425
+ R +HLE+P
Sbjct: 168 PPAQVPREVLKVQTHLENP 186
>gi|688080|gb|AAB31576.1| lectin=chitin-binding protein [Solanum
tuberosum=potatoes, tubers, Peptide Partial, 27 aa]
Length = 27
Frame 3 hits (HSPs): ________________________________
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | 27
0 20
Plus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 9/19 (47%), Positives = 11/19 (57%), Frame = +3
Query: 63 PYPSESSSL*SEPNPPPTS 119
P+PS S P+PPP S
Sbjct: 9 PHPSPPPP--SPPSPPPPS 25
Score = 37 (13.0 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 5/7 (71%), Positives = 6/7 (85%), Frame = +1
Query: 34 IPQPPPP 54
+P PPPP
Sbjct: 1 LPSPPPP 7
>gi|5668970|gb|AAD46109.1|AF078793_1 (AF078793) hensin [Oryctolagus cuniculus]
Length = 86
Frame 3 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 86
0 20 40 60 80
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 4.5, P = 0.99
Identities = 18/60 (30%), Positives = 29/60 (48%), Frame = +3
Query: 18 LSVLQNSSASSSYSLPYPSESSSL*SEPNPPPTSTTTTVTAGSXNAPSGILITAASLFPS 197
LS+L + S +PY + S+ S P P +TTTT P+ ++ + +FPS
Sbjct: 9 LSLLWGPALSQGQWIPYTTYHDSV-SSPGAPVEATTTT----EDTWPTTVIYESTPVFPS 63
>gi|7472482|pir||D75497 hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458317|gb|AAF10197.1|AE001919_10 (AE001919) hypothetical
protein [Deinococcus radiodurans]
Length = 73
Frame 3 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 5.9, P = 1.0
Identities = 10/38 (26%), Positives = 16/38 (42%), Frame = +3
Query: 243 SHRRRWRKSRWSKXPTWPEMPPWASPLTHLEIESSSLT 356
+H W W WP P W +P+ ++ S+T
Sbjct: 24 AHAGHWSPPDWEAVAKWPYQP-WQTPVLRVDTARDSVT 60
>gi|3122583|sp|Q28466|OCT1_MACEU OCTAMER-BINDING TRANSCRIPTION FACTOR 1 (OTF-1)
(NF-A1) >gi|166096|gb|AAA31607.1| (M97955) oct-1 [Macropus eugenii]
Length = 75
Frame 3 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 75
0 20 40 60
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 7.6, P = 1.0
Identities = 19/53 (35%), Positives = 32/53 (60%), Frame = +3
Query: 42 ASSSYSLPY--PSESSSL*SEPNPPPTSTTTTVTAGSXNAPSG---ILITAASL 188
ASS+ +LP PS S+S SE + ++TT T+ ++P G +++TA+ L
Sbjct: 13 ASSAVTLPSMSPSPSASA-SEASSASETSTTQTTSTPLSSPLGTGQVMVTASGL 65
>gi|7296560|gb|AAF51843.1| (AE003598) CG14454 gene product [Drosophila
melanogaster]
Length = 120
Frame 3 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 120
0 50 100
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 9.6, P = 1.0
Identities = 28/88 (31%), Positives = 43/88 (48%), Frame = +3
Query: 9 LTWLSVLQNSSASSSYSLPYPSESSSL*SEPNPPPTSTTTTVTAGSXNAPSGILITAASL 188
L L + SS++S+ S S SS + ++TTTT TA S + + TA+S
Sbjct: 13 LCLLLAQEGSSSTSTSSTATTSTDSS--ATTTTASSATTTTTTASSASTTT----TASSS 66
Query: 189 FPSSKVVLVRFCCRRRIMSHRRRWRKSR 272
S++ R RRR+ RRR ++ R
Sbjct: 67 SSSAEARRRRRARRRRLARERRRRQERR 94
>gi|2833375|sp|Q39290|RPBX_BRANA DNA-DIRECTED RNA POLYMERASE II 8.2 KDA
POLYPEPTIDE (RPB10) (RP10) (ABC10) >gi|7447619|pir||T07852 probable
DNA-directed RNA polymerase (EC 2.7.7.6) II chain RPB10 - rape
>gi|533690|gb|AAA21279.1| (U12133) RNA polymerase II subunit RPB10
homolog; similar to yeast RNA polymerase II subunit RPB10,
Swiss-Prot Accession Number P22139 [Brassica napus]
Length = 71
Frame 3 hits (HSPs): _________
Annotated Domains: __________________________________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL01112A: RNA polymerases N / 8 Kd subun 1..18
BLOCKS BL01112B: RNA polymerases N / 8 Kd subun 35..54
PFAM RNA_pol_N: RNA polymerases N / 8 kDa sub 1..60
PRODOM PD006539: RPBX(4) RPON(3) O26147(1) 2..53
PROSITE RNA_POL_N_8KD: RNA polymerases N / 8 Kd 2..11
__________________
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 10., P = 1.0
Identities = 9/13 (69%), Positives = 12/13 (92%), Frame = +3
Query: 210 LVRFCCRRRIMSH 248
LVR+CCRR +M+H
Sbjct: 40 LVRYCCRRMLMTH 52
>gi|6647762|sp|O26147|RPON_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT N (RPB10)
>gi|7447621|pir||A69152 DNA-dependent RNA polymerase, subunit N -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621076|gb|AAB84548.1| (AE000796) DNA-dependent RNA polymerase,
subunit N [Methanothermobacter thermautotrophicus]
Length = 55
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 55
0 20 40
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 10., P = 1.0
Identities = 9/17 (52%), Positives = 12/17 (70%), Frame = +3
Query: 210 LVRFCCRRRIMSHRRRW 260
L R+CCRR ++SH W
Sbjct: 39 LKRYCCRRMLISHVETW 55
>gi|11134747|sp|Q9SYA6|RPBX_ARATH DNA-DIRECTED RNA POLYMERASE II 8.2 KDA
POLYPEPTIDE (RPB10) (RP10) (ABC10) >gi|4508082|gb|AAD21426.1|
(AC005882) Putative RNA polymerase II subunit Rpb10 [Arabidopsis
thaliana]
Length = 71
Frame 3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 10., P = 1.0
Identities = 9/13 (69%), Positives = 12/13 (92%), Frame = +3
Query: 210 LVRFCCRRRIMSH 248
LVR+CCRR +M+H
Sbjct: 40 LVRYCCRRMLMTH 52
>gi|9257102|pdb|1EF4|A Chain A, Solution Structure Of The Essential Rna
Polymerase Subunit Rpb10 From Methanobacterium Thermoautotrophicum
Length = 55
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 55
0 20 40
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 10., P = 1.0
Identities = 9/17 (52%), Positives = 12/17 (70%), Frame = +3
Query: 210 LVRFCCRRRIMSHRRRW 260
L R+CCRR ++SH W
Sbjct: 39 LKRYCCRRMLISHVETW 55
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.93
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.325 0.133 0.428
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.334 0.148 0.472
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.158 0.599
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.351 0.160 0.642
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.147 0.463
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.335 0.141 0.460
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 165 160 10. 75 3 12 22 0.10 34
30 0.099 37
+2 0 165 158 10. 74 3 12 22 0.098 34
30 0.097 37
+1 0 165 158 10. 74 3 12 22 0.098 34
30 0.097 37
-1 0 165 158 10. 74 3 12 22 0.098 34
30 0.097 37
-2 0 165 161 10. 75 3 12 22 0.10 34
30 0.10 37
-3 0 165 159 10. 75 3 12 22 0.099 34
30 0.098 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 18
No. of states in DFA: 590 (58 KB)
Total size of DFA: 195 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 180.89u 1.09s 181.98t Elapsed: 00:00:36
Total cpu time: 180.91u 1.11s 182.02t Elapsed: 00:00:36
Start: Mon Oct 1 23:08:56 2001 End: Mon Oct 1 23:09:32 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000