Reference SNP(refSNP) Cluster Report: rs10929536

Reference SNP(refSNP) Cluster Report: rs10929536

refSNP ID: rs10929536
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	120/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	A
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss16856752 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10929536 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss16856752	CSHL-HAPMAP\|CSHL-HuAA-200402.chr2.NT_005334.14_3542657	fwd/T	A/G	tgatggacacaaaatggatactctatgcca	atgattgacagaaagaacaggcccactcac	02/17/04	10/26/06	120	Genomic	unknown
ss20102458	CSHL-HAPMAP\|CSHL-HuFF-200402.chr2.NT_005334.14_3542657	fwd/T	A/G	tgatggacacaaaatggatactctatgcca	atgattgacagaaagaacaggcccactcac	02/21/04	03/04/04	120	Genomic	unknown
ss21617337	SSAHASNP\|WGSA-200403-chr2.chr2.NT_005334.14_3542657	fwd/T	A/G	tgatggacacaaaatggatactctatgcca	atgattgacagaaagaacaggcccactcac	03/20/04	03/20/04	121	Genomic	unknown
ss44289101	ABI\|hCV3041796	fwd/T	A/G	tgatggacacaaaatggatactctatgcca	atgattgacagaaagaacaggcccactcac	07/18/05	07/18/05	126	Genomic	unknown
ss77413801	HGSV\|Cor12156_SNV_20070510.chr2_8659120	fwd/T	A/G	tgatggacacaaaatggatactctatgcca	atgattgacagaaagaacaggcccactcac	10/09/07	10/12/07	129	Genomic	unknown
ss91048889	BCMHGSC_JDW\|JWB-1197795	fwd/T	A/G	tgatggacacaaaatggatactctatgcca	atgattgacagaaagaacaggcccactcac	02/26/08	03/01/08	129	Genomic	unknown

Fasta sequence (Legend)

 CTGCAGCCCT CCTGGCCTCT GGGCTCACTG TTAGTAGTGG ATGTGTCTTC TCCATTTCTG
 ATTGCCTAGT GCTTGGCCTG GTGCCTGGAA TATGCTAGAT GCCCAATAAT ATGGACTGAA
 TCACAGCAAA AAGGGAGGGA GGGAGGAAGT AGGTGGATAG GTTTGATGGA AAAATGAGCA
 CTCACATCAA GCAAGATGCT GAGGTGTGAT CTATGTTGGT AACATTATAT AAGGCTTGCA
 CTTGCCTATG ATGGACACAA AATGGATACT CTATGCCA
 R
 ATGATTGACA GAAAGAACAG GCCCACTCAC GTGGCTTTAT GCATTTCTGT AGCTCCACAG
 GGTCGAGACC CCTACCTTGC CTATGGCGGT CTTCTAGAAC CAGAGAAACC TCTGGATATT
 TGAAAGACAT AAGGGGCtgt gttggtaaat tttatgtgtc aacttggctg agtcaccatg
 cccagatatt tggtcaaaca ttattctcga tgtttctgtg agggtgcctt tgactgagat
 tgatatttaa atcagtggac tttgagtaaa gcaggtgacc ttccatcgtg tgtgtgggtc
 tcacccaatc aggttaaggc ctgaagaggc taaagagtga ccttccccga gcaagaagga
 atcctgccag gcctctgggc ttgaaccaca gccccaaact ttcccaatct gcatcctgct
 ggccagcctg cagattttct ggaatttaca caattccgta attttgtaag ccaaatcctt
 aaaataaatc tctctatata

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs10929536 maps exactly once on NCBI human chromosome 2

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
2	NW_001838766.1	799708	8554578	plus	G	alt_assembly_8	HuRef	HuRef	view	278
2	NW_927719.1	8552745	8620810	plus	A	alt_assembly_1	Celera	Celera	view	278
2	NT_005334.15	3542657	8625973	plus	A	ref_assembly	reference	reference	view	278

NCBI Resource Links

Submitter-Referenced
GenBank
NT_005334

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss16856752	HapMap-CEU	European	120	IG	0.150	0.567	0.283	0.251	0.433	0.567

	HapMap-HCB	Asian	90	IG	0.489	0.422	0.089	1.000	0.700	0.300

	HapMap-JPT	Asian	88	IG	0.341	0.386	0.273	0.150	0.534	0.466

	HapMap-YRI	Sub-Saharan African	120	IG	0.917	0.083		0.752	0.958	0.042

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.447+/-0.154	270	210	0	0

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .