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Join Evaluation Legend
- Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <100 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
- Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.1%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
- Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.1%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
- Certificate submitted, not yet approved.
- Certificate submitted and approved.
- Valid, contained clone
- Join not evaluated due to one accession not being finished.
Curator Links
Alignment for AC026813.4 and AC092404.2
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AC026813.4 Mus musculus strain C57BL6/J chromosome 5 clone RP23-119M19, complete sequence [htgs_phase3]
Length: 113,770 bp
AC092404.2 Mus musculus strain C57BL6/J chromosome 5 clone RP23-261D18, complete sequence [htgs_phase3]
Length: 225,503 bp
Alignment Summary
Join evaluation: Alignment count: 1
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Alignment 1 of 1
Mismatches = 0, Gaps = 0, Length = 4588 Percent identity = 100% Score = 9096 bits (4588), Expect = 0 2 BAC and 4 Fosmid bridging clones. 2 BAC and 4 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AC026813.4 <4588 tcttgttcagaataaaacctagagtccggctcagcatttctctacactgattacattctt 4529 AC092404.2 <225503 ............................................................ 225444 AC026813.4 <4528 tcatgttcataatttctctaccatttgactttttaggtttcttctgaggtttttgtgttt 4469 AC092404.2 <225443 ............................................................ 225384 AC026813.4 <4468 gctacaatgttctggctttctcctttttgacattttctaccttcttagtgtcccaggttc 4409 AC092404.2 <225383 ............................................................ 225324 AC026813.4 <4408 actccttggctgttctctcctgcagcctgcagcatacatgggatcttaatgatggaggtg 4349 AC092404.2 <225323 ............................................................ 225264 AC026813.4 <4348 ccagacaaggctcttcctctttttgaacctttctagtctttggatcctttgaacctctct 4289 AC092404.2 <225263 ............................................................ 225204 AC026813.4 <4288 tatttctgagtcacattttccaactctcagtatgaacacttcccataatgctcttcttgg 4229 AC092404.2 <225203 ............................................................ 225144 AC026813.4 <4228 tcccttgctgtttacaagacttattttttctgactaattcaaccactgacaggcttaatt 4169 AC092404.2 <225143 ............................................................ 225084 AC026813.4 <4168 ttcatttctactctgcaaatttcaagcctgtttttcttccctgatgattttcatgttcgt 4109 AC092404.2 <225083 ............................................................ 225024 AC026813.4 <4108 gcccccccacccccacacacactgtgttctcaagtctgtgtatctgagatctcacgctgc 4049 AC092404.2 <225023 ............................................................ 224964 AC026813.4 <4048 atatttaattgtagaagctgtgttctcatgctaattgttacccaaaacacctgtttccaa 3989 AC092404.2 <224963 ............................................................ 224904 AC026813.4 <3988 tgtcctgcacatgggctaaggaagcctgcccacagttggctctgattgggaaatacagtt 3929 AC092404.2 <224903 ............................................................ 224844 AC026813.4 <3928 gccaacagccaatggctggtcagagtaaaagaggcaggacttttatatttccgggacaag 3869 AC092404.2 <224843 ............................................................ 224784 AC026813.4 <3868 ggataaaaggaagaggaaggagagattcgccatgacagagatgcagagagatcagaagta 3809 AC092404.2 <224783 ............................................................ 224724 AC026813.4 <3808 aaggcccgccgccaacatataagaatctggggaagcgaccccaagggccacttttggtct 3749 AC092404.2 <224723 ............................................................ 224664 AC026813.4 <3748 agggaatcaaagagctctggagggtggcaagaagcttgatcacctgatgggaggtctaaa 3689 AC092404.2 <224663 ............................................................ 224604 AC026813.4 <3688 cagattaactattctctgctacatttaataatctccttaagtatttcactagttcaaatg 3629 AC092404.2 <224603 ............................................................ 224544 AC026813.4 <3628 tcttctcttgttctccttagtcacaaatttctagactaccatagatttacttttaactat 3569 AC092404.2 <224543 ............................................................ 224484 AC026813.4 <3568 gtaaaaacatataaaatataatttatttattctctcttactatattaattgcaaattata 3509 AC092404.2 <224483 ............................................................ 224424 AC026813.4 <3508 taatcaatgaagataagtatgccttaaatattactatatactcttaagaccaatgcttga 3449 AC092404.2 <224423 ............................................................ 224364 AC026813.4 <3448 tataatcttctcataagtacacattaagatttccctagctctctgggctggagagatggc 3389 AC092404.2 <224363 ............................................................ 224304 AC026813.4 <3388 tcagcggttaagagcactgactgctcttccagaggtcctgagttcaaatcccagcaacca 3329 AC092404.2 <224303 ............................................................ 224244 AC026813.4 <3328 cacggtggctcacaaccatctgtaatgagatctgatgccctcttttggtgtgtctgaaga 3269 AC092404.2 <224243 ............................................................ 224184 AC026813.4 <3268 cagctacagtgtacttaaatataataaataaataaataaataaatcttaaaaaaaatttc 3209 AC092404.2 <224183 ............................................................ 224124 AC026813.4 <3208 cttagctctaacatacagaattctccactaacataagagaacgacaccagcattactaac 3149 AC092404.2 <224123 ............................................................ 224064 AC026813.4 <3148 ttaacatttacgtggggggattgatagtgatgaaaataatttcatttataattctaaata 3089 AC092404.2 <224063 ............................................................ 224004 AC026813.4 <3088 atactattggtgtcaaaccaaacttgatattcctttatcaactgggccataaatatttac 3029 AC092404.2 <224003 ............................................................ 223944 AC026813.4 <3028 cttcaagataaaatttgatataaacttccaaactaaaagaaaaagaaaacttacgcaatt 2969 AC092404.2 <223943 ............................................................ 223884 AC026813.4 <2968 tttagagatgaggtcaaaactatgcacatttgttctttttaggtactgaatccatgagcc 2909 AC092404.2 <223883 ............................................................ 223824 AC026813.4 <2908 catttgttgaaagtttagtgaaatatgagatgatgtcacttttttttgtttgtgtgtttc 2849 AC092404.2 <223823 ............................................................ 223764 AC026813.4 <2848 ccaaagacaaaagatcaatgaaaacttacctggaatatgtttctttaatggttctgcatg 2789 AC092404.2 <223763 ............................................................ 223704 AC026813.4 <2788 atagaagtcaacaatacatttacaaatttgtatccttaatgcagaacttggtattttcat 2729 AC092404.2 <223703 ............................................................ 223644 AC026813.4 <2728 taactcacctgcgagaaggataaaggagagcaatgtattaacatgttataagtttatttt 2669 AC092404.2 <223643 ............................................................ 223584 AC026813.4 <2668 aaaatgtaagcatataatactgattatataataattaagatctcatcagatattcacatt 2609 AC092404.2 <223583 ............................................................ 223524 AC026813.4 <2608 gcatcatataattgcatgtgtgatcttatgtatgttatgcattacttcatttgagagtat 2549 AC092404.2 <223523 ............................................................ 223464 AC026813.4 <2548 atgttgaaagagttcttgttaggtgttgcttttaatatgaatttttacacaaccatgatt 2489 AC092404.2 <223463 ............................................................ 223404 AC026813.4 <2488 aagtccaagagagaaaagagaaaatgagatatgcagtgagtgtaagatgtgggaagttgt 2429 AC092404.2 <223403 ............................................................ 223344 AC026813.4 <2428 tgctggcaaacagtatgctgtttgacagttaatccaaaaatagtaagtagaaagtacagt 2369 AC092404.2 <223343 ............................................................ 223284 AC026813.4 <2368 ccagatgataaaatatagtaaatacagaatcccggagcacagcgagctgccaatgcccaa 2309 AC092404.2 <223283 ............................................................ 223224 AC026813.4 <2308 gtagtatgaacttcagatagctaggttactattttttttcagataattagcaatgagggc 2249 AC092404.2 <223223 ............................................................ 223164 AC026813.4 <2248 tttgtttatgccattttcaccacaaataggtagataatgatttgcactacaacaaactat 2189 AC092404.2 <223163 ............................................................ 223104 AC026813.4 <2188 gccttcaataggggaatagaatttttttgatcaatgatagatttatagaaccatcatctt 2129 AC092404.2 <223103 ............................................................ 223044 AC026813.4 <2128 acatatattctattgttgggtggaatgaggtgatacagtgcatgacagtatatgggaaca 2069 AC092404.2 <223043 ............................................................ 222984 AC026813.4 <2068 tacatgcacatgtgactacataatactttgagtctattattatgtatttggtatctcaat 2009 AC092404.2 <222983 ............................................................ 222924 AC026813.4 <2008 catttcagcctgtcatttccagaaagaacagaatgatactaataacatagatactgaagc 1949 AC092404.2 <222923 ............................................................ 222864 AC026813.4 <1948 caagttatccaagattaaattctggttttgctacacactccctttggtaccttggttttt 1889 AC092404.2 <222863 ............................................................ 222804 AC026813.4 <1888 ccatccataaaagaggaataacagttgctacatttaagaatgctatcggcaggcgtggtg 1829 AC092404.2 <222803 ............................................................ 222744 AC026813.4 <1828 gcgcacgcctttagtcccagcacttgggaggcagaggcaggcggatttctgagttcgagg 1769 AC092404.2 <222743 ............................................................ 222684 AC026813.4 <1768 ccagcttggtctactaagtgagttccaggacagccagggctacacagaaaaactctgtct 1709 AC092404.2 <222683 ............................................................ 222624 AC026813.4 <1708 caaaaaaaaaaaaaaaaaaacaacaaaaaacaaacaaacaaaaaaaagaatgctatcaag 1649 AC092404.2 <222623 ............................................................ 222564 AC026813.4 <1648 atttatttcatatgagacaagggctgagaatgcttagcatatcattaagtgctacatgtg 1589 AC092404.2 <222563 ............................................................ 222504 AC026813.4 <1588 atggttactgttagatcaaacatagcttagtggtctctctagactcagagatttgtgctc 1529 AC092404.2 <222503 ............................................................ 222444 AC026813.4 <1528 cacggtgtatttgtttcttaatggtccacattagctttgctctcaatttgctggcagact 1469 AC092404.2 <222443 ............................................................ 222384 AC026813.4 <1468 ggcaggaaggtatctgggcagtctttggctcaaaggcaataattttatgttcaagttttc 1409 AC092404.2 <222383 ............................................................ 222324 AC026813.4 <1408 tgggtgagcatgaaggacacaggatttcttttcctccatacctatactactactactgag 1349 AC092404.2 <222323 ............................................................ 222264 AC026813.4 <1348 ttcaatttggctaactcaataatttaaactagactgcattcactcgtttgaagttcaaca 1289 AC092404.2 <222263 ............................................................ 222204 AC026813.4 <1288 agaatgtcccctcaggagaatctgaagaaaatctgcagggctctgcagtgacccatgctg 1229 AC092404.2 <222203 ............................................................ 222144 AC026813.4 <1228 tctggatacctaaggacaaccagagtcagcagaatcagttttaggattaaactgtttaag 1169 AC092404.2 <222143 ............................................................ 222084 AC026813.4 <1168 attggattctctgagcataaaacaatagagtccttttaagtctgggcttttatttgggcc 1109 AC092404.2 <222083 ............................................................ 222024 AC026813.4 <1108 tcatgtaatattaacttccatcagagtggacatgtgtgagggagcacgggtacaggggta 1049 AC092404.2 <222023 ............................................................ 221964 AC026813.4 <1048 acatacaaggcaggcctccttcttgctttagcaccatctcctccagaaagctgaccctta 989 AC092404.2 <221963 ............................................................ 221904 AC026813.4 <988 ctaataatgtcaagaatatctccttatacatcatgttggaagcttcatttggagtgagaa 929 AC092404.2 <221903 ............................................................ 221844 AC026813.4 <928 tgtcagttttttaaaaataaaaaaataataacaataacaggcaagagagcaattaaacta 869 AC092404.2 <221843 ............................................................ 221784 AC026813.4 <868 gccaagcaggaagtatggaaactctcatctgcttctccatcttttcagctcccacaaatt 809 AC092404.2 <221783 ............................................................ 221724 AC026813.4 <808 cagaatatttcttacagcttcctgatttagcattttaaagcagagtaccaacttttgctc 749 AC092404.2 <221723 ............................................................ 221664 AC026813.4 <748 ttatttatttccagaacccttctcccgagtcagaaatatctacacatcatttagaagaaa 689 AC092404.2 <221663 ............................................................ 221604 AC026813.4 <688 ccctaatacttacatggtagaacctgaaggttcttaatagttgtcatgaacatattttat 629 AC092404.2 <221603 ............................................................ 221544 AC026813.4 <628 acttcacattgtgtattttcatttacttcatgtttccagaaattaaaaaggcactagaca 569 AC092404.2 <221543 ............................................................ 221484 AC026813.4 <568 gagaagtatttgcactacatcattggtgttgtaagaagttaggagttcacactttgccca 509 AC092404.2 <221483 ............................................................ 221424 AC026813.4 <508 gtggcaaagcaatgtactattactaacaggtgtcagtaagtaaagaataatgggatgaca 449 AC092404.2 <221423 ............................................................ 221364 AC026813.4 <448 ggacatggattattctagaatgtctgctagttttctaggaggcaacattctagaatagca 389 AC092404.2 <221363 ............................................................ 221304 AC026813.4 <388 gggccaacagggacacttaaaaataatattaccaacaaaatctattttttaaaaaaatat 329 AC092404.2 <221303 ............................................................ 221244 AC026813.4 <328 tagcatgtcatgttttaaaatgtcttcttcctatttaacattttttagtatggggaacac 269 AC092404.2 <221243 ............................................................ 221184 AC026813.4 <268 ttggaaaacaacttaagagaatagttttaaaagtttactgatcatttatctattatttca 209 AC092404.2 <221183 ............................................................ 221124 AC026813.4 <208 cttttgtaaataaagacataaactagtaactatgaatttaacataatttttttggaaaac 149 AC092404.2 <221123 ............................................................ 221064 AC026813.4 <148 atatcatcatgtcccagaggctgattatcagaatatgttgttgtttttttttttctgttt 89 AC092404.2 <221063 ............................................................ 221004 AC026813.4 <88 cattttctttctttctttttttaaaaatttatttatggggctggagagatggctcagtgg 29 AC092404.2 <221003 ............................................................ 220944 AC026813.4 <28 ttaagagcactgactgctcttccagagg 1 AC092404.2 <220943 ............................ 220916
| Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
| A | 1 | 220915 | - | - | chenhc | Taxid 10090 chrom 5 Reference assembly | 2008-11-20 16:52:20.910 |
Events
| Id | Type | Date | Whodid | Comment |
| 9124 | ImportOldDb | 09/02/2005 22:24:00 | f_old_db | |
| 9125 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
| 168932 | CreateSwitchPt | 11/20/2008 16:52:20 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
BAC Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| C3H-119A14 | AC092404.2 | 99.49% | pos 174702 (R+) | AC026813.4 | 99.22% | pos 105516 (F-) |
| C3H-143C19 | AC026813.4 | 99.83% | pos 59563 (R+) | |||
| C3H-143G1 | AC026813.4 | 99.86% | pos 59486 (R+) | |||
| C3H-149K19 | AC026813.4 | 99.16% | pos 72776 (F+) | |||
| C3H-176O7 | AC026813.4 | 99.1% | pos 72395 (R+) | |||
| C3H-177O7 | AC026813.4 | 99.85% | pos 72433 (R+) | |||
| C3H-201L10 | AC092404.2 | 99.25% | pos 81336 (R+) | AC092404.2 | 99.88% | pos 198817 (F-) |
| C3H-201L9 | AC092404.2 | 99.3% | pos 81345 (R+) | |||
| C3H-225H5 | AC092404.2 | 99.56% | pos 55740 (R-) | |||
| C3H-225O5 | AC092404.2 | 100% | pos 55651 (R-) | |||
| C3H-28O21 | AC092404.2 | 99.57% | pos 136768 (F-) | |||
| CH29-488M20 | AC092404.2 | 99.04% | pos 154867 (F+) | |||
| CH29-74B19 | AC092404.2 | 99.32% | pos 200613 (R+) | |||
| RP23-237J18 | AC026813.4 | 99.08% | pos 91135 (F+) | |||
| RP24-127D17 | AC092404.2 | 99.01% | pos 215909 (R+) | |||
| RP24-128B15 | AC092404.2 | 99.82% | pos 103339 (F-) | |||
| RP24-281C7 | AC026813.4 | 99.64% | pos 72458 (F-) | |||
| RP24-286D15 | AC092404.2 | 99.19% | pos 169403 (F-) | |||
| RP24-294H14 | AC092404.2 | 99.17% | pos 43933 (F-) | |||
| RP24-62I20 | AC026813.4 | 99.14% | pos 106483 (R-) | AC092404.2 | 99.12% | pos 144118 (F+) |
Fosmid Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| WI1-1053N11 | AC026813.4 | 100% | pos 88486 (F+) | |||
| WI1-1091I3 | AC092404.2 | 100% | pos 71823 (R-) | AC092404.2 | 100% | pos 25602 (F+) |
| WI1-1295G4 | AC092404.2 | 100% | pos 7652 (R-) | |||
| WI1-1384O12 | AC092404.2 | 99.59% | pos 215019 (R+) | |||
| WI1-1390H15 | AC092404.2 | 99.58% | pos 83959 (R-) | AC092404.2 | 99.6% | pos 44550 (F+) |
| WI1-147F8 | AC026813.4 | 99.85% | pos 32049 (R-) | AC092404.2 | 100% | pos 212894 (F+) |
| WI1-1508N10 | AC092404.2 | 99.13% | pos 183918 (F+) | |||
| WI1-1683M20 | AC026813.4 | 100% | pos 65389 (R-) | AC026813.4 | 99.83% | pos 27603 (F+) |
| WI1-1743M11 | AC092404.2 | 100% | pos 99296 (R-) | AC092404.2 | 100% | pos 56691 (F+) |
| WI1-175E6 | AC026813.4 | 100% | pos 73290 (R-) | |||
| WI1-2106D8 | AC026813.4 | 100% | pos 96820 (F+) | |||
| WI1-2219J17 | AC092404.2 | 100% | pos 70542 (R+) | AC092404.2 | 100% | pos 111542 (F-) |
| WI1-2299C9 | AC092404.2 | 100% | pos 97971 (R+) | |||
| WI1-2311D10 | AC092404.2 | 100% | pos 6785 (F-) | |||
| WI1-2372F23 | AC092404.2 | 100% | pos 142885 (R-) | AC092404.2 | 100% | pos 103211 (F+) |
| WI1-240I11 | AC092404.2 | 100% | pos 52614 (R-) | |||
| WI1-2414D22 | AC092404.2 | 99.08% | pos 156831 (R+) | AC092404.2 | 100% | pos 198369 (F-) |
| WI1-2448N21 | AC026813.4 | 99.75% | pos 37436 (R-) | AC092404.2 | 99.35% | pos 219362 (F+) |
| WI1-2555B23 | AC092404.2 | 99.83% | pos 85658 (R-) | AC092404.2 | 99.82% | pos 45835 (F+) |
| WI1-2689P8 | AC026813.4 | 100% | pos 89480 (R+) | |||
| WI1-2799L4 | AC026813.4 | 100% | pos 83342 (R+) | |||
| WI1-2850O9 | AC092404.2 | 99.74% | pos 148489 (R-) | AC092404.2 | 99.46% | pos 110075 (F+) |
| WI1-2900E8 | AC092404.2 | 100% | pos 200013 (R+) | AC026813.4 | 99.78% | pos 16700 (F-) |
| WI1-349F20 | AC092404.2 | 100% | pos 69419 (R-) | AC092404.2 | 100% | pos 30093 (F+) |
| WI1-483P14 | AC026813.4 | 99.78% | pos 20743 (R+) | AC026813.4 | 99.79% | pos 59558 (F-) |
| WI1-612K8 | AC092404.2 | 99.47% | pos 64064 (R-) | |||
| WI1-64L5 | AC092404.2 | 99.81% | pos 72424 (R+) | AC092404.2 | 99.81% | pos 113811 (F-) |
| WI1-699B21 | AC026813.4 | 99.04% | pos 15335 (R-) | AC092404.2 | 99.85% | pos 196628 (F+) |
| WI1-759N10 | AC026813.4 | 100% | pos 28388 (R+) | AC026813.4 | 99.55% | pos 69128 (F-) |
| WI1-850D15 | AC092404.2 | 100% | pos 168032 (R+) | |||
| WI1-892M17 | AC092404.2 | 99.33% | pos 156454 (F+) | |||