proteins
| 50 proteins |
NOU | COG1989 | Type II secretory pathway, prepilin signal peptidase PulO and related peptidases | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Salmonella typhimurium LT2 (Enterobacteriales | Gammaproteobacteria) | ||||
| STM3442 | ||||
155 letters (r) 0
0 660 = ||| 1 STM3442 (155) = 0
0 442 = ||| 3 ECs4188 (155) = 0
125
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= STM3442
(155 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
STM3442 258 3e-69
ECs4188 174 5e-44
ZhopD 174 5e-44
VC2426 89 3e-18
hofD 84 1e-16
RSc2827 73 3e-13
YPO0806 70 1e-12
XF2537 70 2e-12
NMB0332 70 2e-12
PA4528 69 4e-12
NMA2156 67 1e-11
CC0184 56 3e-08
pppA 54 1e-07
PM0087 46 3e-05
mll6828 43 3e-04
slr1120 40 0.002
alr1315 39 0.004
HI0296 37 0.013
BH3035 33 0.35
aq_1601 32 0.59
DR2065 30 1.5
BS_comC 28 7.0
VC0839 28 9.4
# >STM3442
# Length = 155
#
# Score = 258 bits (660), Expect = 3e-69
# Identities = 155/155 (100%), Positives = 155/155 (100%)
#
# Query: 1 MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI 60
# MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI
# Sbjct: 1 MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI 60
#
# Query: 61 AGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVA 120
# AGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVA
# Sbjct: 61 AGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVA 120
#
# Query: 121 LLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG 155
# LLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG
# Sbjct: 121 LLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG 155
#
#
# >ECs4188
# Length = 155
#
# Score = 174 bits (442), Expect = 5e-44
# Identities = 101/148 (68%), Positives = 115/148 (77%)
#
# Query: 1 MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI 60
# M LPFLI YA S LL +DA+ GLLPDRFTCPLLW GLL++Q+C P+ L DALWGAI
# Sbjct: 1 MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAI 60
#
# Query: 61 AGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVA 120
# GYG FA+IYWGYR+ KEGLGYGDVK+LAALGAWH W LP LVFLAA ACG +
# Sbjct: 61 IGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIG 120
#
# Query: 121 LLVRGKSALINPLPFGPWLAVAGFITGW 148
# LL+RGK +L NPLPFGP+LA AGF+ GW
# Sbjct: 121 LLMRGKESLKNPLPFGPFLAAAGFVIGW 148
#
#
# >ZhopD
# Length = 155
#
# Score = 174 bits (442), Expect = 5e-44
# Identities = 101/148 (68%), Positives = 115/148 (77%)
#
# Query: 1 MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI 60
# M LPFLI YA S LL +DA+ GLLPDRFTCPLLW GLL++Q+C P+ L DALWGAI
# Sbjct: 1 MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAI 60
#
# Query: 61 AGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVA 120
# GYG FA+IYWGYR+ KEGLGYGDVK+LAALGAWH W LP LVFLAA ACG +
# Sbjct: 61 IGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIG 120
#
# Query: 121 LLVRGKSALINPLPFGPWLAVAGFITGW 148
# LL+RGK +L NPLPFGP+LA AGF+ GW
# Sbjct: 121 LLMRGKESLKNPLPFGPFLAAAGFVIGW 148
#
#
# >VC2426
# Length = 291
#
# Score = 89.0 bits (219), Expect = 3e-18
# Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
#
# Query: 8 LIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICL-PERLPDALWGAIAGYGGF 66
# L+F++ + D T LLPD+ T PLLWGG+ + P L DA+ GA+AGY
# Sbjct: 133 LLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMAGYLSL 192
#
# Query: 67 ALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGK 126
# IYW ++L KEG+GYGD K LAALGAW W+ LP++V L++++ FG+ L + K
# Sbjct: 193 WSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV-IFGLIQLRQQK 251
#
# Query: 127 SALINPLPFGPWLAVAGF 144
# + PFGP+LA+AG+
# Sbjct: 252 KGIDMAFPFGPYLAIAGW 269
#
#
# >hofD
# Length = 225
#
# Score = 84.0 bits (206), Expect = 1e-16
# Identities = 63/138 (45%), Positives = 86/138 (61%), Gaps = 2/138 (1%)
#
# Query: 8 LIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFA 67
# L Y F L L + D RT LLPD+ T PLLW GL+++ L DA++GA+AGYG
# Sbjct: 80 LFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLW 139
#
# Query: 68 LIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGKS 127
# +YWG L KEGLGYGD K LAA GAW W+TLP+++ +A++ G V+ L++ ++
# Sbjct: 140 CVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRT 199
#
# Query: 128 ALINPLPFGPWLAVAGFI 145
# I + FGPWLA+ I
# Sbjct: 200 --ITTIAFGPWLALGSMI 215
#
#
# >RSc2827
# Length = 294
#
# Score = 72.8 bits (177), Expect = 3e-13
# Identities = 59/132 (44%), Positives = 78/132 (58%), Gaps = 2/132 (1%)
#
# Query: 14 FSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALIYWGY 73
# F + + DA T LLPD T PLLW GLL + + RLPDA+ GA AGY IYW Y
# Sbjct: 145 FLIAGSMIDADTQLLPDAITQPLLWLGLLVNLFSMFARLPDAVIGATAGYLFLWAIYWAY 204
#
# Query: 74 RLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGKSALINPL 133
# +L +EG+GYGD K + ALGAW W+ L+ L + + FGV + RG ++ +P
# Sbjct: 205 KLLRGREGMGYGDFKLMGALGAWFGWQA-LPLLVLLSSVVGLVFGVVRIARGATSE-SPF 262
#
# Query: 134 PFGPWLAVAGFI 145
# FGP++A AG I
# Sbjct: 263 SFGPFIAGAGVI 274
#
#
# >YPO0806
# Length = 280
#
# Score = 70.5 bits (171), Expect = 1e-12
# Identities = 46/130 (35%), Positives = 69/130 (52%), Gaps = 2/130 (1%)
#
# Query: 18 LGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALIYWGYRLRY 77
# L D T LLPD T PLLW GLL + + L A+ GA++GY L YW +++
# Sbjct: 138 LAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWLSYWLFKIVR 197
#
# Query: 78 QKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGK--SALINPLPF 135
# +G+GYGD K +AALGAW +P L+ ++ + + K IN + F
# Sbjct: 198 GVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFYFFDKKDNGKEINYIAF 257
#
# Query: 136 GPWLAVAGFI 145
# GP++++AG +
# Sbjct: 258 GPYISLAGVL 267
#
#
# >XF2537
# Length = 287
#
# Score = 70.1 bits (170), Expect = 2e-12
# Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
#
# Query: 9 IFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFAL 68
# I ++ F + L D RT LLPD+ T L+W GL+ L AL GA+ GY +
# Sbjct: 133 IVFSCFLVALAGIDLRTRLLPDQLTLMLMWLGLIGSTDNLFMAAKPALLGAVVGYLSLWI 192
#
# Query: 69 IYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGKSA 128
# + ++L + KEG+G+GD K LAALGAW + + ++ ++++ V L+VRG +
# Sbjct: 193 VAALFKLIFNKEGMGHGDFKMLAALGAWCGLKGILPIILISSLAGVVLGSVWLVVRGHNR 252
#
# Query: 129 LINPLPFGPWLAVAGFITGWKVFF 152
# +PFGP+LAV GW VFF
# Sbjct: 253 -TTMIPFGPYLAVG----GWIVFF 271
#
#
# >NMB0332
# Length = 286
#
# Score = 69.7 bits (169), Expect = 2e-12
# Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
#
# Query: 13 SFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALIYWG 72
# +F + L DA T LPD T PL+W GL+++ L A+ GA+AGYG L+
# Sbjct: 138 AFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWLLCAV 197
#
# Query: 73 YRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGKSALINP 132
# Y+L K G+G GD K +AALGAW LP+L+F+++++ V + +G+
# Sbjct: 198 YKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLVAAIVMRVAKGQH----- 252
#
# Query: 133 LPFGPWLAVAGFI 145
# FGP L V+G+I
# Sbjct: 253 FAFGPALTVSGWI 265
#
#
# >PA4528
# Length = 290
#
# Score = 68.9 bits (167), Expect = 4e-12
# Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
#
# Query: 16 LLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALIYWGYRL 75
# L + + DA LLPD PLLW GL+ + L L DAL+GA+ GY ++W ++L
# Sbjct: 143 LAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKL 202
#
# Query: 76 RYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGKSALINPLPF 135
# KEG+GYGD K LA LGAW W+ LPL + L++++ GV +L + P+PF
# Sbjct: 203 VTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG-AILGVIMLRLRNAESGTPIPF 261
#
# Query: 136 GPWLAVAGFI 145
# GP+LA+AG+I
# Sbjct: 262 GPYLAIAGWI 271
#
#
# >NMA2156
# Length = 286
#
# Score = 67.4 bits (163), Expect = 1e-11
# Identities = 49/137 (35%), Positives = 75/137 (53%), Gaps = 5/137 (3%)
#
# Query: 9 IFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFAL 68
# + +F + L DA T LPD T PL+W GL+++ L A+ GA+AGYG L
# Sbjct: 134 LILTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
#
# Query: 69 IYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGKSA 128
# + Y+L + G+G GD K +AALGAW LP+L+F+++++ V + +G+
# Sbjct: 194 LCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLVAAIVMRVAKGQH- 252
#
# Query: 129 LINPLPFGPWLAVAGFI 145
# FGP L V+G+I
# Sbjct: 253 ----FAFGPALTVSGWI 265
#
#
# >CC0184
# Length = 269
#
# Score = 56.2 bits (134), Expect = 3e-08
# Identities = 44/131 (33%), Positives = 64/131 (48%)
#
# Query: 16 LLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALIYWGYRL 75
# LL+ D LPDR T P G++ + L GA G+GG ALI W Y+
# Sbjct: 128 LLIATIDTEHLWLPDRLTLPFGALGVIATLAIGEVPVWTPLVGAAVGFGGLALIAWLYKT 187
#
# Query: 76 RYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGKSALINPLPF 135
# +G+G GD + L A+GAW W+ LP ++ A + LVR + + LPF
# Sbjct: 188 VRGFDGMGGGDPRLLGAIGAWVGWQGLPSVLVWACVAGLSVAIAQTLVRRRFSGDQQLPF 247
#
# Query: 136 GPWLAVAGFIT 146
# G +LA+ ++T
# Sbjct: 248 GAFLAIGAWLT 258
#
#
# >pppA
# Length = 310
#
# Score = 53.9 bits (128), Expect = 1e-07
# Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
#
# Query: 8 LIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICL-PERLPDALWGAIAGYGGF 66
# ++ +++ + + D LPD FT +LW GL+ P L DA+ G + G+ F
# Sbjct: 170 VMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFITF 229
#
# Query: 67 ALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGK 126
# + W + +KE LG GDV AALG W +LP + +A+ CG + RG
# Sbjct: 230 YSLRWIAGIVLRKEALGMGDVLLFAALGGWVGALSLPNVALIAS--CCGLIYAVITKRGS 287
#
# Query: 127 SALINPLPFGPWLAVAGFIT 146
# + LPFGP L++ G T
# Sbjct: 288 TT----LPFGPCLSLGGIAT 303
#
#
# >PM0087
# Length = 240
#
# Score = 45.8 bits (107), Expect = 3e-05
# Identities = 41/134 (30%), Positives = 66/134 (48%), Gaps = 4/134 (2%)
#
# Query: 7 FLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICL-PERLPDALWGAIAGYGG 65
# F+ Y S ++ + + D R L+ + L W G++ + + P L +L A+ G+
# Sbjct: 87 FIASYVSIAICIAVIDWRYQLISVQLCYCLFWIGVVAAYVEVSPLHLEQSLQSALTGFFA 146
#
# Query: 66 FALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRG 125
# F +Y + Y+KE LG GD + LG+ + LPL +FLA ++ G G +R
# Sbjct: 147 FYCLYHLSKGIYRKELLGKGDYWLMLGLGSMSHFAWLPLWLFLACVM---GLGYVCGLRI 203
#
# Query: 126 KSALINPLPFGPWL 139
# K I LPF P+L
# Sbjct: 204 KGQKIKQLPFAPFL 217
#
#
# >mll6828
# Length = 164
#
# Score = 43.1 bits (100), Expect = 3e-04
# Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
#
# Query: 3 VALPFLIFYASFSL-----LLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALW 57
# V P L+ A+ +L + I D R ++PD L GL Y + +P L
# Sbjct: 2 VTHPSLVLAATIALAVVLGAISIADFRRQIIPDGLNLALAGIGLSYQLAADADAMPQRLL 61
#
# Query: 58 GAIAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGF 117
# A A + L+ G+ L + GLG GDVK LAA W LP+L+F+A+ A
# Sbjct: 62 FAAATFAAAWLLRRGHFLMTGRIGLGLGDVKMLAAASCWISPLLLPVLLFIASASALLFV 121
#
# Query: 118 GVALLVRGKSALINPLPFGPWLAVA 142
# G ++ G +A + FGP++A+
# Sbjct: 122 GGQVVATGPAAARARVAFGPFIAIG 146
#
#
# >slr1120
# Length = 269
#
# Score = 39.7 bits (91), Expect = 0.002
# Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
#
# Query: 13 SFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPER------LPDALWGAIAGYGGF 66
# SF + L + D T LP+ T P L GLL+H + +R L +A+ A+ G F
# Sbjct: 112 SFLISLTLIDWDTMTLPNSLTKPGLVLGLLFHLLLGWQRGHWIVPLVEAIASAVLGLWLF 171
#
# Query: 67 ALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGK 126
# LI G L +EG+G GD K + +GAW W +L L F+A + +G L+ G
# Sbjct: 172 DLIRMGGSLLLGREGMGDGDPKLASMVGAWLGWPSLLLTTFIACFIG-SIYGGLKLLLGT 230
#
# Query: 127 SALINPLPFGPWLAVAGFIT 146
# PFGP+LA+ I+
# Sbjct: 231 LQRRQGFPFGPFLAIGALIS 250
#
#
# >alr1315
# Length = 269
#
# Score = 39.3 bits (90), Expect = 0.004
# Identities = 45/146 (30%), Positives = 62/146 (41%), Gaps = 12/146 (8%)
#
# Query: 11 YASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQIC----------LPERLPDALWGAI 60
# + + L L + D T LP+ T L GL++ I L L + GA+
# Sbjct: 110 FCGWLLALSLIDLDTMTLPNPLTKSGLVLGLVFQMIVGYAADPTLSGLIRHLMMGIVGAV 169
#
# Query: 61 AGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVA 120
# G F I + +QKE +G GD K A +GAW W L L +A L GV
# Sbjct: 170 LGLWLFEAIAL-LGVVFQKEAMGAGDAKLAAMMGAWLGWRYLLLAGLIACTLG-ALVGVG 227
#
# Query: 121 LLVRGKSALINPLPFGPWLAVAGFIT 146
# ++ K +PFGP+LA IT
# Sbjct: 228 AILLSKRKWGQKIPFGPFLASGALIT 253
#
#
# >HI0296
# Length = 230
#
# Score = 37.4 bits (85), Expect = 0.013
# Identities = 31/94 (32%), Positives = 49/94 (51%), Gaps = 6/94 (6%)
#
# Query: 52 LPDALWGAIAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAM 111
# L +++ A + + F +IYW + Y KE G GD ALG++ ETLP + LA++
# Sbjct: 134 LSESIKSAASFFIVFYVIYWLAKFYYGKEAFGRGDYWLAMALGSFIHLETLPHFLLLASV 193
#
# Query: 112 LACGGFGVALLVRGKSALINPLPFGPWLAVAGFI 145
# L G +L+ R K LPF P++ ++ I
# Sbjct: 194 L---GICFSLIHRKKKEF---LPFAPFMNLSAVI 221
#
#
# >BH3035
# Length = 162
#
# Score = 32.7 bits (73), Expect = 0.35
# Identities = 27/86 (31%), Positives = 44/86 (50%), Gaps = 6/86 (6%)
#
# Query: 54 DALWGAIAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLA 113
# DA GA+ GY ++Y Y G+G GDVK LG W+ + + L+++
# Sbjct: 61 DAWAGAVVGYILLFIVYLIY-----PNGIGGGDVKLFTVLGFVLGWKLTLVAIMLSSLCG 115
#
# Query: 114 CGGFGVALLVRGKSALINPLPFGPWL 139
# G GV +++ G+ P+PFGP++
# Sbjct: 116 AIGGGVGMML-GRIKRREPIPFGPFI 140
#
#
# >aq_1601
# Length = 254
#
# Score = 32.0 bits (71), Expect = 0.59
# Identities = 38/136 (27%), Positives = 65/136 (46%), Gaps = 2/136 (1%)
#
# Query: 10 FYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALI 69
# F+ S L++ I D +LP L G+L +++ GA+ G +I
# Sbjct: 106 FFFSALLVMSIIDWYYFILPPGINIGGLVLGILVSPFRQDITPKESIIGAVVGVLIPFVI 165
#
# Query: 70 YWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRGKSAL 129
# Y Y + EGLG+GDV L +G+ + +F+ + L + + +++R KS +
# Sbjct: 166 YLYYVKFRKIEGLGFGDVILLGFIGSVSGVYGVFSALFIGSFLGL-LYALPMIIRHKS-M 223
#
# Query: 130 INPLPFGPWLAVAGFI 145
# LPFGP+L++ FI
# Sbjct: 224 NFALPFGPFLSLGAFI 239
#
#
# >DR2065
# Length = 388
#
# Score = 30.4 bits (67), Expect = 1.5
# Identities = 33/111 (29%), Positives = 49/111 (43%), Gaps = 21/111 (18%)
#
# Query: 52 LPDALWGAIAGYGGFAL---IYWGYRLRYQKE--------------GLGYGDVKYLAALG 94
# L D L G + G +L +YW R K+ +G+GDVK A +G
# Sbjct: 264 LLDMLRGGLMAAGAVSLVCGVYWWIYWRRNKQAEDDGTDDEQSDPVAMGFGDVKLAAVIG 323
#
# Query: 95 AWHCWETLPLLVFLAAMLACGGFGVALLVRGKSALINPLPFGPWLAVAGFI 145
# A+ WE L LL + A+ A G+ L + N + FGP+LA+ +
# Sbjct: 324 AFLGWERL-LLAVVVAIFAGAVLGLVQLALKQE---NRVKFGPYLALGAVV 370
#
#
# >BS_comC
# Length = 248
#
# Score = 28.1 bits (61), Expect = 7.0
# Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
#
# Query: 9 IFYASFSLLLGIYDARTGLLPDR---FTCPLLWGGLLYHQICLPERLPDALWGAIAGYGG 65
# + + S +++ + D L+P+R F P L L + + L GA AG+
# Sbjct: 100 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPL---DSWYAGLLGAAAGFLF 156
#
# Query: 66 FALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLVRG 125
# A+I G+G GD+K A +G + L F + ++ +G A ++ G
# Sbjct: 157 LAVI-----AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIG-ALYGAARVLTG 210
#
# Query: 126 KSALINPLPFGPWLAVAGFI 145
# + A PLPF P +A +
# Sbjct: 211 RLAKRQPLPFAPAIAAGSIL 230
#
#
# >VC0839
# Length = 253
#
# Score = 27.7 bits (60), Expect = 9.4
# Identities = 31/126 (24%), Positives = 57/126 (44%), Gaps = 14/126 (11%)
#
# Query: 2 FVALPFLIFYASFS-----LLLGIY---------DARTGLLPDRFTCPLLWGGLLYHQIC 47
# F + F I++ S +LLG+Y D ++ LLP+ T P+ +Y Q
# Sbjct: 91 FFIIAFPIYWLSTDWVDSFVLLGLYFILFNLFVIDFKSMLLPNLLTYPIFMLAFIYVQQN 150
#
# Query: 48 LPERLPDALWGAIAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVF 107
# + ++ G A + + + RL + + +G GD+K A+G E +P L
# Sbjct: 151 PALTVESSIIGGFAAFIISYVSNFIVRLFKRIDVMGGGDIKLYTAIGTLIGVEFVPYLFL 210
#
# Query: 108 LAAMLA 113
# L++++A
# Sbjct: 211 LSSIIA 216
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.331 0.152 0.535
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,789,503
Number of Sequences: 192987
Number of extensions: 941779
Number of successful extensions: 2865
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2812
Number of HSP's gapped (non-prelim): 56
length of query: 155
length of database: 59,019,183
effective HSP length: 100
effective length of query: 55
effective length of database: 39,720,483
effective search space: 2184626565
effective search space used: 2184626565
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
S2: 60 (27.7 bits)