R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 42 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|8131898|gb|AAF73128.1|AF148541_1 (AF148541) cyclic nucleotide-binding
transporter 1 [Arabidopsis thaliana]
>gi|8131901|gb|AAF73130.1|AF148542_2 (AF148542) cyclic
nucleotide-binding transporter 1 [Arabidopsis thaliana]
>gi|9294160|dbj|BAB02062.1| (AB022219) contains similarity to
cyclic nucleotide and calmodulin-regulated ion channel
protein-like~gene_id:MKP6.28 [Arabidopsis thaliana]
Length = 764
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | || 764
0 150 300 450 600 750
Plus Strand HSPs:
Score = 401 (141.2 bits), Expect = 1.6e-35, P = 1.6e-35
Identities = 83/148 (56%), Positives = 101/148 (68%), Frame = +2
Query: 11 ECMKFIDCGRGHGNNQPGLRSDQWINNTQAVACLDPSPDGFSYGIYENAVPLTIETNVVK 190
EC IDCG +GN+ +R+ W +N A AC DGF YGIY AV LT +N+
Sbjct: 407 ECQDLIDCG--NGNSSVLVRAT-WKDNASANACFQE--DGFPYGIYLKAVNLTNHSNLFT 461
Query: 191 KYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGRR 370
+Y YSLFWGFQQISTLAGN PSYF+ EV FTM IIG+GLLLFA+LIGN+QNFLQALG+R
Sbjct: 462 RYSYSLFWGFQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKR 521
Query: 371 KLEMPL*KPGC*PWMTXRALPQNXKKEI 454
LEM L + WM+ R LP ++ +
Sbjct: 522 NLEMTLRRRDVEQWMSHRRLPDGIRRRV 549
>gi|8131900|gb|AAF73129.1|AF148542_1 (AF148542) cyclic nucleotide-binding
transporter 2 [Arabidopsis thaliana] >gi|9294159|dbj|BAB02061.1|
(AB022219) cyclic nucleotide and calmodulin-regulated ion channel
protein-like [Arabidopsis thaliana]
Length = 729
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 729
0 150 300 450 600
Plus Strand HSPs:
Score = 362 (127.4 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 76/148 (51%), Positives = 98/148 (66%), Frame = +2
Query: 11 ECMKFIDCGRGHGNNQPGLRSDQWINNTQAVACLDPSPDGFSYGIYENAVPLTIETNVVK 190
E IDC RG ++ + D W +N AC + G++YGIY AV LT E++
Sbjct: 373 ERRNLIDCARGSYASKS--QRDLWRDNASVNACFQEN--GYTYGIYLKAVNLTNESSFFT 428
Query: 191 KYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGRR 370
++ YSL+WGFQQISTLAGNL PSY V EV FTM IIG+GLLLFA LIGN+ NFLQ+L RR
Sbjct: 429 RFSYSLYWGFQQISTLAGNLSPSYSVGEVFFTMGIIGLGLLLFARLIGNMHNFLQSLDRR 488
Query: 371 KLEMPL*KPGC*PWMTXRALPQNXKKEI 454
++EM L K WM+ R LP++ +K +
Sbjct: 489 RMEMMLRKRDVEQWMSHRRLPEDIRKRV 516
>gi|6587805|gb|AAF18496.1|AC010924_9 (AC010924) Strong similarity to gb|Y17914
ion channel protein from Arabidopsis thaliana and is a member of
the PF|00914 transmembrane CNG channel family containing a PF|00027
cyclic nucleotide-binding domain
Length = 738
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 738
0 150 300 450 600
Plus Strand HSPs:
Score = 228 (80.3 bits), Expect = 6.6e-17, P = 6.6e-17
Identities = 58/149 (38%), Positives = 83/149 (55%), Frame = +2
Query: 14 CMKFIDCGRGHGNNQPGLRSDQWINNTQAVA---CLDPSPDG-FSYGIYENAVPLTI--E 175
C++ + CG ++ G +WI + C + D F+YGIY A+ I
Sbjct: 309 CVQILYCGTKFVSS--G--ETEWIKTVPELLKSNCSAKADDSKFNYGIYGQAISSGIVSS 364
Query: 176 TNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQ 355
T K+ Y L+WG Q +STL L S F EVLF++AI GLLLFA+LIGN+Q +LQ
Sbjct: 365 TTFFSKFCYCLWWGLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQ 424
Query: 356 ALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+L R EM + + WM R+LPQN ++ +
Sbjct: 425 SLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERV 457
>gi|4572671|gb|AAD23886.1|AC006954_7 (AC006954) putative cyclic
nucleotide-regulated ion channel protein [Arabidopsis thaliana]
Length = 690
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 690
0 150 300 450 600
Plus Strand HSPs:
Score = 221 (77.8 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 52/151 (34%), Positives = 90/151 (59%), Frame = +2
Query: 2 NIP-ECMK-FIDCGRGHGNNQPGLRSDQWINNTQAVACLDPSPD-GFSYGIYENAVPLTI 172
++P +C+ F DCG H +++ + W N T + DPS + F++GI+ +A+ +
Sbjct: 251 SVPLQCVTDFFDCGTLHRDDR-----NNWQNTTVVFSNCDPSNNIQFTFGIFADALTKNV 305
Query: 173 ETN-VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNF 349
++ ++KY+Y L++G Q +S+ NL S V E +F + + GL+LFA+LIGN+Q +
Sbjct: 306 VSSPFLEKYLYCLWFGLQNLSSYGQNLSTSTSVLETMFAILVAIFGLVLFALLIGNMQTY 365
Query: 350 LQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
LQ++ R E L + WM R LPQN ++ +
Sbjct: 366 LQSITVRLEEWRLKRRDTEEWMGHRLLPQNLRERV 400
>gi|7269936|emb|CAB81029.1| (AL161576) cyclic nucleotide and
calmodulin-regulated ion channel-like protein [Arabidopsis
thaliana]
Length = 726
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 726
0 150 300 450 600
Plus Strand HSPs:
Score = 221 (77.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 51/144 (35%), Positives = 74/144 (51%), Frame = +2
Query: 23 FIDCGRGHGNNQPGLRSDQWINNTQAVACLDPSPDGFSYGIYENAVPLTI-ETNVVKKYV 199
++DC + NNQ W N T+ D F YGI+ NA+ + + ++Y
Sbjct: 303 YLDCDSMYDNNQM-----TWANVTKVFKLCDARNGEFKYGIFGNAITKNVVSSQFFERYF 357
Query: 200 YSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGRRKLE 379
Y L+WG QQ+S+ NL + F+ E F + I GL+LFA LIGN+Q +LQ+L R E
Sbjct: 358 YCLWWGLQQLSSYGQNLSTTMFMGETTFAVLIAIFGLVLFAHLIGNMQTYLQSLTVRLEE 417
Query: 380 MPL*KPGC*PWMTXRALPQNXKKEI 454
L K WM R LP+ + +
Sbjct: 418 WRLKKRDTEEWMRHRQLPEELRNRV 442
>gi|4581205|emb|CAB40130.1| (Y17913) cyclic nucleotide and calmodulin-regulated
ion channel [Arabidopsis thaliana] >gi|9758363|dbj|BAB08864.1|
(AB013396) cyclic nucleotide and calmodulin-regulated ion channel
[Arabidopsis thaliana]
Length = 710
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 710
0 150 300 450 600
Plus Strand HSPs:
Score = 213 (75.0 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 52/147 (35%), Positives = 83/147 (56%), Frame = +2
Query: 23 FIDCGRGHGNNQPGL----RSDQWINNTQAVACLDPSPDGFSYGIYENAVPLTIET--NV 184
F+ CG N G R+ + + ++ A LD + F +GIY A+ I + N
Sbjct: 300 FLYCGN---QNMDGYAVWNRAKESVLKSKCRADLDDNNPPFDFGIYTQALSSGIVSSQNF 356
Query: 185 VKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALG 364
+ KY Y L+WG Q +STL L S + E++F++++ GL+LFA+LIGN+Q +LQ+L
Sbjct: 357 IVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLT 416
Query: 365 RRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
R EM + + WM R LPQ+ ++ +
Sbjct: 417 IRLEEMRVKRRDSEQWMHHRMLPQDLRERV 446
>gi|4803955|gb|AAD29827.1|AC006202_5 (AC006202) putative cyclic nucleotide and
calmodulin-regulated ion channel protein [Arabidopsis thaliana]
Length = 678
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 678
0 150 300 450 600
Plus Strand HSPs:
Score = 204 (71.8 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 49/145 (33%), Positives = 79/145 (54%), Frame = +2
Query: 20 KFIDCGRGHGNNQPGLRS-DQWINNTQAVACLDPSPDGFSYGIYENAVPLTIETN-VVKK 193
+F +C R P S +W N T C P+ + +GI+ +AV T+ ++ + K
Sbjct: 286 RFFECRR---LEDPQRNSWFEWSNIT--TIC-KPASKFYEFGIFGDAVTSTVTSSKFINK 339
Query: 194 YVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGRRK 373
Y Y L+WG + +S+L NL S + E+LF + I +GL+LFA+LIGN+Q +LQ+ R
Sbjct: 340 YFYCLWWGLKNLSSLGQNLATSTYAGEILFAIIIATLGLVLFALLIGNMQTYLQSTTMRL 399
Query: 374 LEMPL*KPGC*PWMTXRALPQNXKKEI 454
E + + WM R LP ++ +
Sbjct: 400 EEWRIRRTDTEQWMHHRQLPPELRQAV 426
>gi|8515883|gb|AAF76224.1|AF272002_1 (AF272002) CaM-regulated potassium ion
channel [Arabidopsis thaliana]
Length = 695
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 695
0 150 300 450 600
Plus Strand HSPs:
Score = 204 (71.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 53/152 (34%), Positives = 87/152 (57%), Frame = +2
Query: 32 CGRGHGNNQPGL--RSDQWI-NNTQAVAC--LDP----SPDGFSYGIYENAVPL-TIETN 181
C + G N L +D+ + NN +C LDP + F++GI+ +A+ +E++
Sbjct: 272 CEKTKGCNMKFLYCENDRNVSNNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESH 331
Query: 182 VV-KKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQA 358
KK+ Y +WG + +S L NL S FV E++F ++I GL+LFA+LIGN+Q +L++
Sbjct: 332 DFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLES 391
Query: 359 LGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
R+ EM + K WM+ R LP++ +K I
Sbjct: 392 TTVREEEMRVRKRDAEQWMSHRMLPEDLRKRI 423
>gi|9665147|gb|AAF97331.1|AC023628_12 (AC023628) Putative cyclic
nucleotide-regulated ion channel protein [Arabidopsis thaliana]
Length = 706
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 706
0 150 300 450 600
Plus Strand HSPs:
Score = 204 (71.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 53/152 (34%), Positives = 87/152 (57%), Frame = +2
Query: 32 CGRGHGNNQPGL--RSDQWI-NNTQAVAC--LDP----SPDGFSYGIYENAVPL-TIETN 181
C + G N L +D+ + NN +C LDP + F++GI+ +A+ +E++
Sbjct: 272 CEKTKGCNMKFLYCENDRNVSNNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESH 331
Query: 182 VV-KKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQA 358
KK+ Y +WG + +S L NL S FV E++F ++I GL+LFA+LIGN+Q +L++
Sbjct: 332 DFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLES 391
Query: 359 LGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
R+ EM + K WM+ R LP++ +K I
Sbjct: 392 TTVREEEMRVRKRDAEQWMSHRMLPEDLRKRI 423
>gi|11357235|pir||T51519 cyclic nucleotide-gated cation channel - Arabidopsis
thaliana >gi|3096949|emb|CAA76179.1| (Y16328) putative cyclic
nucleotide-regulated ion channel [Arabidopsis thaliana]
>gi|3894399|gb|AAC78613.1| (AF067798) cyclic nucleotide-gated
cation channel [Arabidopsis thaliana]
>gi|9255920|gb|AAF86351.1|AF280939_1 (AF280939) DND1 [Arabidopsis
thaliana] >gi|9755796|emb|CAC01740.1| (AL391143) cyclic
nucleotide-gated cation channel [Arabidopsis thaliana]
Length = 726
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 726
0 150 300 450 600
Plus Strand HSPs:
Score = 204 (71.8 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 45/116 (38%), Positives = 67/116 (57%), Frame = +2
Query: 107 CLDPSPDGFSYGIYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFT 286
CLD S F YGIY A+P+ ++ K +Y +FWG +ST A +L P+ EV+F+
Sbjct: 372 CLD-SNGPFRYGIYRWALPVISSNSLAVKILYPIFWGLMTLSTFANDLEPTSNWLEVIFS 430
Query: 287 MAIIGMGLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ ++ GLLLF +LIGNIQ FL A+ +K +M + WM R LP ++ +
Sbjct: 431 IVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRV 486
>gi|11357236|pir||T51354 cyclic nucleotide-regulated ion channel 1 [validated]
- Arabidopsis thaliana >gi|3096947|emb|CAA76178.1| (Y16327)
putative cyclic nucleotide-regulated ion channel [Arabidopsis
thaliana] >gi|9757994|dbj|BAB08416.1| (AB025622) cyclic
nucleotide-regulated ion channel [Arabidopsis thaliana]
Length = 716
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 716
0 150 300 450 600
Plus Strand HSPs:
Score = 200 (70.4 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 42/115 (36%), Positives = 69/115 (60%), Frame = +2
Query: 116 PSPDGFSYGIYENAVPL-TIET-NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTM 289
P+ F +GI+ +A+ +E+ + +K+ Y +WG Q +S+L NL S ++WE+ F +
Sbjct: 327 PNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAV 386
Query: 290 AIIGMGLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
I GL+LF+ LIGN+Q +LQ+ R EM + + WM+ R LP+N +K I
Sbjct: 387 FISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRI 441
>gi|11357234|pir||T51432 cyclic nucleotide and calmodulin-regulated ion
channel-like protein - Arabidopsis thaliana
>gi|9755755|emb|CAC01886.1| (AL391149) cyclic nucleotide and
calmodulin-regulated ion channel-like protein [Arabidopsis
thaliana]
Length = 706
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 706
0 150 300 450 600
Plus Strand HSPs:
Score = 198 (69.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/148 (32%), Positives = 78/148 (52%), Frame = +2
Query: 11 ECM-KFIDCGRGHGNNQPGLRSDQWINNTQAVACLDP--SPDGFSYGIYENAVPLTIET- 178
+C+ F+DC QP W N TQ ++ D S F +G++ A + T
Sbjct: 258 DCLPSFLDC---KSLEQP--ERQYWQNVTQVLSHCDATSSTTNFKFGMFAEAFTTQVATT 312
Query: 179 NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQA 358
+ V KY+Y L+WG + +S+ N+ S ++ E LF + I GL+LF +LIGN+Q+ LQ+
Sbjct: 313 DFVSKYLYCLWWGLRNLSSYGQNITTSVYLGETLFCITICIFGLILFTLLIGNMQSSLQS 372
Query: 359 LGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ R E + + WM R LP ++ +
Sbjct: 373 MSVRVEEWRVKRRDTEEWMRHRQLPPELQERV 404
>gi|7484881|pir||T10541 cyclic nucleotide gated channel homolog F3I3.30 -
Arabidopsis thaliana
Length = 698
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 698
0 150 300 450 600
Plus Strand HSPs:
Score = 196 (69.0 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 54/150 (36%), Positives = 88/150 (58%), Frame = +2
Query: 5 IPE-C-MKFIDCGRGHGNNQPGLRSDQWINNTQAVACLD-PSPDGFSYGIYENAVPLTI- 172
IPE C +F+ C GN+ +R+D + + D + F++GI+ +A+ I
Sbjct: 282 IPEVCNFRFLYCD---GNSS--VRNDFLTTSCPFINPDDITNSTVFNFGIFTDALKSGIV 336
Query: 173 ETNVV-KKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNF 349
E++ KK+ Y +WG + +S L NL S FV E++F ++I GL+LFA+LIGN+Q +
Sbjct: 337 ESDDFWKKFFYCFWWGLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKY 396
Query: 350 LQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
L++ R+ EM + K WM+ R LP + +K I
Sbjct: 397 LESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRI 431
>gi|4581207|emb|CAB40131.1| (Y17914) cyclic nucleotide and calmodulin-regulated
ion channel [Arabidopsis thaliana]
Length = 747
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 747
0 150 300 450 600
Plus Strand HSPs:
Score = 195 (68.6 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 46/115 (40%), Positives = 66/115 (57%), Frame = +2
Query: 113 DPSPDGFSYGIYENAVPLTIET--NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFT 286
D P F +GIY A+ I + N V KY + L+WG Q +STL L S + EV+F+
Sbjct: 355 DEEPP-FDFGIYLRALSSGIVSSKNFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFS 413
Query: 287 MAIIGMGLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ + GLLLFA+LIGN+Q +LQ+L R EM + + WM R LP ++ +
Sbjct: 414 ITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERV 469
>gi|7269957|emb|CAB79774.1| (AL161577) cyclic nucleotide and
calmodulin-regulated ion channel-like protein [Arabidopsis
thaliana]
Length = 733
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 733
0 150 300 450 600
Plus Strand HSPs:
Score = 192 (67.6 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 44/110 (40%), Positives = 65/110 (59%), Frame = +2
Query: 131 FSYGIYENAVPLTIETN--VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGM 304
F +GIY A+ I ++ V KY + L+WG Q +STL L S + EV+F++A+
Sbjct: 359 FDFGIYLRALSSGIVSSKSFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIA 418
Query: 305 GLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
GLLLFA+LIGN+Q +LQ+L R EM + + WM R LP ++ +
Sbjct: 419 GLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERV 468
>gi|6969231|gb|AAF33670.1|AF079872_1 (AF079872) cyclic nucleotide-gated
calmodulin-binding ion channel [Nicotiana tabacum]
Length = 708
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 708
0 150 300 450 600
Plus Strand HSPs:
Score = 189 (66.5 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 42/115 (36%), Positives = 65/115 (56%), Frame = +2
Query: 116 PSPDGFSYGIYENAVPLTI--ETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTM 289
P+ F +GI+ A+ + + +K+ Y +WG Q +S+L NL S F+WE+ F +
Sbjct: 320 PNATLFDFGIFLGALQSGVVGPMDFPQKFFYCFWWGLQNLSSLGQNLQTSTFIWEMCFAV 379
Query: 290 AIIGMGLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
I GL+LFA LIGN+Q LQ+ R EM + + WM+ R LP+N ++ I
Sbjct: 380 FISIAGLVLFAFLIGNMQTCLQSSTLRLEEMRVKRRDAEQWMSHRLLPENLRERI 434
>gi|4581201|emb|CAB40128.1| (Y17911) cyclic nucleotide and calmodulin-regulated
ion channel [Arabidopsis thaliana]
Length = 706
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 706
0 150 300 450 600
Plus Strand HSPs:
Score = 187 (65.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 41/110 (37%), Positives = 66/110 (60%), Frame = +2
Query: 131 FSYGIYENAVPL-TIET-NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGM 304
F++GI+ +A+ +E+ + KK+ Y +WG + +S L NL S F E++F + I
Sbjct: 323 FNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSAFEGEIIFAIVICIS 382
Query: 305 GLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
GL+LFA+LIGN+Q +LQ+ R EM + + WM+ R LP + +K I
Sbjct: 383 GLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRI 432
>gi|4378659|gb|AAD19610.1| (AF107726) cyclic nucleotide gated channel
[Arabidopsis thaliana]
Length = 707
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 707
0 150 300 450 600
Plus Strand HSPs:
Score = 187 (65.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 41/110 (37%), Positives = 66/110 (60%), Frame = +2
Query: 131 FSYGIYENAVPL-TIET-NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGM 304
F++GI+ +A+ +E+ + KK+ Y +WG + +S L NL S F E++F + I
Sbjct: 323 FNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSSFEGEIIFAIVICIS 382
Query: 305 GLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
GL+LFA+LIGN+Q +LQ+ R EM + + WM+ R LP + +K I
Sbjct: 383 GLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRI 432
>gi|4559385|gb|AAD23045.1|AC006526_12 (AC006526) putative cyclic
nucleotide-regulated ion channel protein [Arabidopsis thaliana]
Length = 718
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 718
0 150 300 450 600
Plus Strand HSPs:
Score = 187 (65.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 41/110 (37%), Positives = 66/110 (60%), Frame = +2
Query: 131 FSYGIYENAVPL-TIET-NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGM 304
F++GI+ +A+ +E+ + KK+ Y +WG + +S L NL S F E++F + I
Sbjct: 335 FNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSAFEGEIIFAIVICIS 394
Query: 305 GLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
GL+LFA+LIGN+Q +LQ+ R EM + + WM+ R LP + +K I
Sbjct: 395 GLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRI 444
>gi|6969229|gb|AAF33669.1|AF079871_1 (AF079871) cyclic nucleotide-gated
calmodulin-binding ion channel [Nicotiana tabacum]
Length = 702
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 702
0 150 300 450 600
Plus Strand HSPs:
Score = 184 (64.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 47/150 (31%), Positives = 81/150 (54%), Frame = +2
Query: 14 CMKFIDCGRGH-GNNQPGLRSDQWIN-NTQAVACLDPSPDGFSYGIYENAVPLTI--ETN 181
C F +C H Q G ++ Q++N + + + + + F +GI+ +A+ + N
Sbjct: 282 CKGFEECVLDHLCCGQQG-KNAQFLNFSCRLLKPEEIQENDFDFGIFRDALQSRVVQRRN 340
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
K Y +WG + +S+L L S F+ E+LF + I +GL+LF++LIGN+Q +LQ++
Sbjct: 341 FWSKLSYCFWWGLRNLSSLGQGLNTSDFLGEILFAVFICILGLILFSLLIGNMQEYLQSI 400
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
R M L + WM+ R LP N ++ I
Sbjct: 401 TVRVEGMRLRRRDAEQWMSHRMLPDNLRERI 431
>gi|7489415|pir||T04424 probable calmodulin binding transport protein - barley
>gi|3169012|emb|CAA05637.1| (AJ002610) putative calmodulin binding
transporter protein [Hordeum vulgare]
Length = 702
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 702
0 150 300 450 600
Plus Strand HSPs:
Score = 183 (64.4 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 47/144 (32%), Positives = 73/144 (50%), Frame = +2
Query: 23 FIDCGRGHGNNQPGLRSDQWINNTQAVACLDPSPDGFSYGIYENAVP-LTIETNVVKKYV 199
++ CG G N + + N D PD +GI+ A+ ++ T+ K
Sbjct: 289 YLYCGNGGTNAGNAFLQNVCVPNITK----DNLPDPL-FGIFVPAINNVSQSTDFFAKLF 343
Query: 200 YSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGRRKLE 379
Y ++WG Q +S+L NL S + WE LF + + GL+LF++LIGN+Q +LQ+ R E
Sbjct: 344 YCVWWGLQNLSSLGQNLKTSTYAWENLFAVFVSISGLVLFSLLIGNMQTYLQSATLRIEE 403
Query: 380 MPL*KPGC*PWMTXRALPQNXKKEI 454
+ WM+ R LP N K+ I
Sbjct: 404 TRVKSRDTDQWMSYRLLPDNLKERI 428
>gi|7487118|pir||T06682 hypothetical protein T17F15.120 - Arabidopsis thaliana
>gi|4678327|emb|CAB41138.1| (AL049658) putative cyclic
nucleotide-gated channel [Arabidopsis thaliana]
Length = 705
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 705
0 150 300 450 600
Plus Strand HSPs:
Score = 180 (63.4 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 46/149 (30%), Positives = 78/149 (52%), Frame = +2
Query: 8 PEC-MKFIDCGRGHGNNQPGLRSDQWINNTQAVACLDPSPDG---FSYGIYENAVPLTIE 175
P C + F+DCG H PG ++ W+ T+ ++ D D F +G++ +A +
Sbjct: 264 PSCSLLFLDCGSLH---DPGRQA--WMRITRVLSNCDARNDDDQHFQFGMFGDAFTNDVT 318
Query: 176 TN-VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFL 352
++ KY Y L+WG + +S+ +L S E +F+ I GL+ F+ LIGN+QN+L
Sbjct: 319 SSPFFDKYFYCLWWGLRNLSSYGQSLAASTLSSETIFSCFICVAGLVFFSHLIGNVQNYL 378
Query: 353 QALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
Q+ R E + + WM R LP ++ +
Sbjct: 379 QSTTARLDEWRVRRRDTEEWMRHRQLPDELQERV 412
>gi|10086501|gb|AAG12561.1|AC007797_21 (AC007797) Putative cyclic nucleotide
and calmodulin-regulated ion channel [Arabidopsis thaliana]
Length = 746
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 746
0 150 300 450 600
Plus Strand HSPs:
Score = 180 (63.4 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 54/147 (36%), Positives = 76/147 (51%), Frame = +2
Query: 14 CMKFIDCGRGHGNNQPGLRSDQWINNTQAVA---CLDPSPDG-FSYGIYENAVPLTI--E 175
C++ + CG + R WI + + C S + F+YGIY AV I
Sbjct: 315 CVQILYCG----SKLMSSRETDWIKSVPDLFKNNCSAKSDESKFNYGIYSQAVSSGIVSS 370
Query: 176 TNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQ 355
T K+ Y L TL L S + EVLF++AI GLLLFA+LIGN+Q +LQ
Sbjct: 371 TTFFSKFCYCL-------CTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQ 423
Query: 356 ALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+L R EM + + WM R+LPQN ++ +
Sbjct: 424 SLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERV 456
>gi|4559397|gb|AAD23057.1|AC006526_13 (AC006526) putative cyclic
nucleotide-regulated ion channel protein [Arabidopsis thaliana]
Length = 588
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 588
0 150 300 450
Plus Strand HSPs:
Score = 177 (62.3 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 42/112 (37%), Positives = 63/112 (56%), Frame = +2
Query: 131 FSYGIYENAVP---LTIET-NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAII 298
F +G+Y +A+ L ++ + +K+VY +WG + IS L NL S E+ F + I
Sbjct: 246 FDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIIC 305
Query: 299 GMGLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
GLLLFA+LIGN+Q +LQ+ R EM K WM+ R +P+ K+ I
Sbjct: 306 VSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKERI 357
>gi|4581203|emb|CAB40129.1| (Y17912) cyclic nucleotide and calmodulin-regulated
ion channel [Arabidopsis thaliana] >gi|9759498|dbj|BAB10748.1|
(AB010695) cyclic nucleotide and calmodulin-regulated ion channel
[Arabidopsis thaliana]
Length = 694
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 694
0 150 300 450 600
Plus Strand HSPs:
Score = 176 (62.0 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 45/125 (36%), Positives = 69/125 (55%), Frame = +2
Query: 80 WINNTQAVA-CLDPSPDGFSYGIYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXP 256
W N QA + CLD + + ++YG Y+ + L + ++K ++ +FWG +ST GNL
Sbjct: 328 WAQNHQARSVCLDINTN-YTYGAYQWTIQLVSSESRLEKILFPIFWGLMTLSTF-GNLE- 384
Query: 257 SYFVW-EVLFTMAIIGMGLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALP 433
S W EV+F + ++ GLLL +LIGNI+ FL A +K M L WM R LP
Sbjct: 385 STTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLP 444
Query: 434 QNXKKEI 454
++ +
Sbjct: 445 IGFRQRV 451
>gi|4559395|gb|AAD23055.1|AC006526_14 (AC006526) putative cyclic
nucleotide-regulated ion channel protein [Arabidopsis thaliana]
Length = 636
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 636
0 150 300 450 600
Plus Strand HSPs:
Score = 175 (61.6 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 41/112 (36%), Positives = 63/112 (56%), Frame = +2
Query: 131 FSYGIYENAVP---LTIET-NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAII 298
F +G+Y +A+ L ++ + +K+VY +WG + IS L NL S E+ F + I
Sbjct: 266 FDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIIC 325
Query: 299 GMGLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
GLLLFA+LIGN+Q +LQ+ R EM + WM+ R +P+ K+ I
Sbjct: 326 VSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYLKERI 377
>gi|7228242|emb|CAB45784.2| (AL080237) cyclic nucleotide gated channel (CNGC4)
like protein [Arabidopsis thaliana] >gi|7267598|emb|CAB80910.1|
(AL161491) cyclic nucleotide gated channel (CNGC4) like protein
[Arabidopsis thaliana]
Length = 689
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 689
0 150 300 450 600
Plus Strand HSPs:
Score = 153 (53.9 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 50/150 (33%), Positives = 82/150 (54%), Frame = +2
Query: 5 IPE-C-MKFIDCGRGHGNNQPGLRSDQWINNTQAVACLD-PSPDGFSYGIYENAVPLTIE 175
IPE C +F+ C GN+ +R+D + + D + F++GI+ +A ++
Sbjct: 280 IPEVCNFRFLYCD---GNSS--VRNDFLTTSCPFINPDDITNSTVFNFGIFTDA----LK 330
Query: 176 TNVVKKYVYSLFWG--FQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNF 349
+ +V+ FW F L NL S FV E++F ++I GL+LFA+LIGN+Q +
Sbjct: 331 SGIVES---DDFWKKFFYCFCALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKY 387
Query: 350 LQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
L++ R+ EM + K WM+ R LP + +K I
Sbjct: 388 LESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRI 422
>gi|3738325|gb|AAC63666.1| (AC005170) cyclic nucleotide and
calmodulin-regulated ion channel [Arabidopsis thaliana]
Length = 688
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 688
0 150 300 450 600
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 42/114 (36%), Positives = 60/114 (52%), Frame = +2
Query: 113 DPSPDGFSYGIYENAVPLTIET--NVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFT 286
D P F +GIY A+ I + N V KY + L TL L S + EV+F+
Sbjct: 303 DEEPP-FDFGIYLRALSSGIVSSKNFVSKYFFCL-------CTLGQGLETSTYPGEVIFS 354
Query: 287 MAIIGMGLLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ + GLLLFA+LIGN+Q +LQ+L R EM + + WM R LP ++ +
Sbjct: 355 ITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERV 410
>gi|7499135|pir||T20935 hypothetical protein F14H8.6 - Caenorhabditis elegans
Length = 611
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | || 611
0 150 300 450 600
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00096, P = 0.00096
Identities = 26/102 (25%), Positives = 48/102 (47%), Frame = +2
Query: 146 YENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAI 325
+EN N ++Y S +W + TL P ++ F + +GL++FA+
Sbjct: 249 WENKTTTIKFANFFRQYALSFYWSALTLVTLGEQPSPCT-TFQNAFEIGDTLLGLVIFAV 307
Query: 326 LIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKE 451
++G++ N + A+ RK E GC +M R +P +K+
Sbjct: 308 IVGDVGNMVVAINLRKSEFENVLDGCKRFMVYRKVPNLLRKK 349
>gi|7499136|pir||T20936 hypothetical protein F14H8.6a - Caenorhabditis elegans
Length = 673
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 673
0 150 300 450 600
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0011, P = 0.0011
Identities = 26/102 (25%), Positives = 48/102 (47%), Frame = +2
Query: 146 YENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAI 325
+EN N ++Y S +W + TL P ++ F + +GL++FA+
Sbjct: 311 WENKTTTIKFANFFRQYALSFYWSALTLVTLGEQPSPCT-TFQNAFEIGDTLLGLVIFAV 369
Query: 326 LIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKE 451
++G++ N + A+ RK E GC +M R +P +K+
Sbjct: 370 IVGDVGNMVVAINLRKSEFENVLDGCKRFMVYRKVPNLLRKK 411
>gi|9367126|emb|CAB02935.3| (Z81061) Similarity to Drosophila CNG channel
(TR:G908846), contains similarity to Pfam domain: PF00027 (Cyclic
nucleotide-binding domain), Score=105.4, E-value=3.7e-28, N=1;
PF00914 (Transmembrane region cyclic Nucleotide Gated Channel),
Score=322.0, >
Length = 710
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 710
0 150 300 450 600
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0012, P = 0.0012
Identities = 26/102 (25%), Positives = 48/102 (47%), Frame = +2
Query: 146 YENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAI 325
+EN N ++Y S +W + TL P ++ F + +GL++FA+
Sbjct: 348 WENKTTTIKFANFFRQYALSFYWSALTLVTLGEQPSPCT-TFQNAFEIGDTLLGLVIFAV 406
Query: 326 LIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXRALPQNXKKE 451
++G++ N + A+ RK E GC +M R +P +K+
Sbjct: 407 IVGDVGNMVVAINLRKSEFENVLDGCKRFMVYRKVPNLLRKK 448
>gi|1151121|gb|AAA96509.1| (U42393) olfactory cyclic-nucleotide gated channel
[Danio rerio]
Length = 98
Frame 2 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 98
0 20 40 60 80
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.0035, P = 0.0035
Identities = 19/79 (24%), Positives = 41/79 (51%), Frame = +2
Query: 143 IYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFA 322
+Y N + T E + + Y+Y +W ++T+ G + P E +F + +G+L+FA
Sbjct: 15 VYPN-ISSTEEGALRRSYIYCFYWSTLTLTTI-GEMPPPVRDEEYVFVVFDFLVGVLIFA 72
Query: 323 ILIGNIQNFLQALGRRKLE 379
++GN+ + + + + E
Sbjct: 73 TIVGNVGSMISNMNATRAE 91
>gi|192641|gb|AAA37425.1| (M84742) cGMP-gated cation channel protein [Mus
musculus]
Length = 683
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 683
0 150 300 450 600
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0081, P = 0.0081
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 336 LARKYVYSLYWSTLTLTTI-GETPPPVLDSEYIFVVVDFLIGVLIFATIVGNIGSMISNM 394
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 395 NAARAEFQSRVDAIKQYMNFRNVSKDMEKRV 425
>gi|2506303|sp|P29974|CNG1_MOUSE CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC
NUCLEOTIDE GATED CHANNEL, PHOTORECEPTOR) (CYCLIC-NUCLEOTIDE-GATED
CATION CHANNEL 1) (CNG CHANNEL 1) (CNG-1) (CNG1)
>gi|885886|gb|AAA85702.1| (U19717) cGMP-gated cation channel [Mus
musculus]
Length = 684
Frame 2 hits (HSPs): ________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 684
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00888A: Cyclic nucleotide-binding doma 477..493
BLOCKS BL00888B: Cyclic nucleotide-binding doma 495..518
BLOCKS BL00888C: Cyclic nucleotide-binding doma 533..542
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..156
Entrez Transmembrane region: H1 (POTENTIAL). 157..177
Entrez Domain: EXTRACELLULAR (POTENTIAL). 178..190
Entrez Transmembrane region: H2 (POTENTIAL). 191..209
Entrez Domain: CYTOPLASMIC (POTENTIAL). 210..233
Entrez Transmembrane region: H3 (POTENTIAL). 234..253
Entrez Domain: EXTRACELLULAR (POTENTIAL). 254..291
Entrez Transmembrane region: H4 (POTENTIAL). 292..314
Entrez Domain: CYTOPLASMIC (POTENTIAL). 315..366
Entrez Transmembrane region: H5 (POTENTIAL). 367..386
Entrez Domain: EXTRACELLULAR (POTENTIAL). 387..470
Entrez Transmembrane region: H6 (POTENTIAL). 471..491
Entrez Domain: CYTOPLASMIC (POTENTIAL). 492..684
Entrez np-binding site: CGMP (POTENTIAL). 479..601
Entrez binding site: CGMP (POTENTIAL). 538
Entrez binding site: CGMP (POTENTIAL). 553
Entrez glycosylation site: POTENTIAL. 417
PFAM CNG_membrane: Transmembrane region cycli 232..457
PFAM cNMP_binding: Cyclic nucleotide-binding 486..582
PRODOM PD010441: CNG1(5) O08659(1) 1..87
PRODOM PD001039: CNG1(6) CNG2(4) CNG3(2) 148..293
PRODOM PD186146: CNG1(5) CNG2(4) CNG(2) 295..342
PRODOM PD000141: CIK4(6) CNG1(6) CIK1(4) 344..403
PRODOM PD002152: CNG1(6) CNG2(4) CNG3(2) 418..480
PRODOM PD000171: KAPR(25) KAP0(8) KGP2(8) 482..595
PRODOM PD004548: CNG1(6) CNG2(4) CNG3(2) 609..658
PRODOM PD080669: CNG1_MOUSE 660..683
PROSITE CNMP_BINDING_1: Cyclic nucleotide-bindin 498..514
PROSITE CNMP_BINDING_2: Cyclic nucleotide-bindin 536..559
__________________
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0081, P = 0.0081
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 337 LARKYVYSLYWSTLTLTTI-GETPPPVLDSEYIFVVVDFLIGVLIFATIVGNIGSMISNM 395
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 396 NAARAEFQSRVDAIKQYMNFRNVSKDMEKRV 426
>gi|539807|pir||B42161 cGMP-gated cation channel, rod photoreceptor - mouse
Length = 688
Frame 2 hits (HSPs): ________
Annotated Domains: __________
__________________________________________________
Database sequence: | | | | | | 688
0 150 300 450 600
__________________
Annotated Domains:
Entrez domain: cAMP receptor protein cyclic nuc 475..599
PROSITE CNMP_BINDING_1: Cyclic nucleotide-bindin 502..518
PROSITE CNMP_BINDING_2: Cyclic nucleotide-bindin 540..563
__________________
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0082, P = 0.0082
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 341 LARKYVYSLYWSTLTLTTI-GETPPPVLDSEYIFVVVDFLIGVLIFATIVGNIGSMISNM 399
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 400 NAARAEFQSRVDAIKQYMNFRNVSKDMEKRV 430
>gi|2493748|sp|Q16281|CNG3_HUMAN CYCLIC-NUCLEOTIDE-GATED CATION CHANNEL 3 (CNG
CHANNEL 3) (CNG-3) (CNG3) >gi|2119468|pir||I78560 cyclic
nucleotide-gated cation channel 3 - human (fragment)
>gi|4261908|gb|AAD14208.1|S76069_1 (S76069) cyclic nucleotide-gated
cation channel [Homo sapiens]
Length = 261
Frame 2 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Transmembrane region: H4 (POTENTIAL). 1..6
Entrez Domain: CYTOPLASMIC (POTENTIAL). 7..58
Entrez Transmembrane region: H5 (POTENTIAL). 59..78
Entrez Domain: EXTRACELLULAR (POTENTIAL). 79..162
Entrez Transmembrane region: H6 (POTENTIAL). 163..183
Entrez Domain: CYTOPLASMIC (POTENTIAL). 184..261
Entrez np-binding site: CAMP (BY SIMILARITY). 171..261
Entrez binding site: CAMP (POTENTIAL). 230
Entrez binding site: CAMP (POTENTIAL). 245
PFAM CNG_membrane: Transmembrane region cycli 1..149
PFAM cNMP_binding: Cyclic nucleotide-binding 178..261
PROSITE CNMP_BINDING_1: Cyclic nucleotide-bindin 190..206
PROSITE CNMP_BINDING_2: Cyclic nucleotide-bindin 228..251
__________________
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.0085, P = 0.0085
Identities = 21/79 (26%), Positives = 42/79 (53%), Frame = +2
Query: 143 IYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFA 322
+Y N + + + +KY+YSL+W ++T+ G P E LF + +G+L+FA
Sbjct: 17 VYPN-ISIPEHGRLSRKYIYSLYWSTLTLTTI-GETPPPVKDEEYLFVVVDFLVGVLIFA 74
Query: 323 ILIGNIQNFLQALGRRKLE 379
++GN+ + + + + E
Sbjct: 75 TIVGNVGSMISNMNASRAE 93
>gi|2493742|sp|Q62927|CNG1_RAT CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC
NUCLEOTIDE GATED CHANNEL, PHOTORECEPTOR) (CYCLIC-NUCLEOTIDE-GATED
CATION CHANNEL 1) (CNG CHANNEL 1) (CNG-1) (CNG1)
>gi|1224028|gb|AAA92110.1| (U48803) rod photoreceptor cyclic
GMP-gated cation channel alpha subunit [Rattus norvegicus]
Length = 683
Frame 2 hits (HSPs): ________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 683
0 150 300 450 600
__________________
Annotated Domains:
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..155
Entrez Transmembrane region: H1 (POTENTIAL). 156..176
Entrez Domain: EXTRACELLULAR (POTENTIAL). 177..189
Entrez Transmembrane region: H2 (POTENTIAL). 190..208
Entrez Domain: CYTOPLASMIC (POTENTIAL). 209..232
Entrez Transmembrane region: H3 (POTENTIAL). 233..252
Entrez Domain: EXTRACELLULAR (POTENTIAL). 253..290
Entrez Transmembrane region: H4 (POTENTIAL). 291..313
Entrez Domain: CYTOPLASMIC (POTENTIAL). 314..365
Entrez Transmembrane region: H5 (POTENTIAL). 366..385
Entrez Domain: EXTRACELLULAR (POTENTIAL). 386..469
Entrez Transmembrane region: H6 (POTENTIAL). 470..490
Entrez Domain: CYTOPLASMIC (POTENTIAL). 491..683
Entrez np-binding site: CGMP (POTENTIAL). 478..600
Entrez binding site: CGMP (POTENTIAL). 537
Entrez binding site: CGMP (POTENTIAL). 552
Entrez glycosylation site: POTENTIAL. 416
PFAM CNG_membrane: Transmembrane region cycli 231..456
PFAM cNMP_binding: Cyclic nucleotide-binding 485..581
PRODOM PD010441: CNG1(5) O08659(1) 1..87
PRODOM PD001039: CNG1(6) CNG2(4) CNG3(2) 147..292
PRODOM PD186146: CNG1(5) CNG2(4) CNG(2) 294..341
PRODOM PD000141: CIK4(6) CNG1(6) CIK1(4) 343..402
PRODOM PD002152: CNG1(6) CNG2(4) CNG3(2) 417..479
PRODOM PD000171: KAPR(25) KAP0(8) KGP2(8) 481..594
PRODOM PD004548: CNG1(6) CNG2(4) CNG3(2) 608..657
PRODOM PD032132: CNG1(1) O08659(1) 659..682
PROSITE CNMP_BINDING_1: Cyclic nucleotide-bindin 497..513
PROSITE CNMP_BINDING_2: Cyclic nucleotide-bindin 535..558
__________________
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.012, P = 0.012
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 336 LARKYVYSLYWSTLTLTTI-GETPPPVLDSEYVFVVVDFLIGVLIFATIVGNIGSMISNM 394
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 395 NAARAEFQSRVDAIKQYMNFRNVSKDMEKRV 425
>gi|1943745|gb|AAC53139.1| (U93851) rod-type cyclic nucleotide-gated cation
channel [Rattus norvegicus]
Length = 683
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 683
0 150 300 450 600
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.012, P = 0.012
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 336 LARKYVYSLYWSTLTLTTI-GETPPPVLDSEYVFVVVDFLIGVLIFATIVGNIGSMISNM 394
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 395 NAARAEFQSRVDAIKQYMNFRNVSKDMEKRV 425
>gi|4261906|gb|AAD14206.1|S76062_1 (S76062) cyclic nucleotide-gated cation
channel [Homo sapiens]
Length = 261
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.018, P = 0.018
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 29 LARKYVYSLYWSTLTLTTI-GETPPPVRDSEYVFVVVDFLIGVLIFATIVGNIGSMISNM 87
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 88 NAARAEFQARIDAIKQYMHFRNVSKDMEKRV 118
>gi|231739|sp|Q00194|CNG1_BOVIN CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC
NUCLEOTIDE GATED CHANNEL, PHOTORECEPTOR) (CYCLIC-NUCLEOTIDE-GATED
CATION CHANNEL 1) (CNG CHANNEL 1) (CNG-1) (CNG1)
>gi|89465|pir||S07103 cGMP-gated ion channel protein - bovine
>gi|204|emb|CAA35947.1| (X51604) cGMP-gated channel [Bos taurus]
>gi|226573|prf||1602246A photoreceptor cGMP gated channel [Bos
taurus]
Length = 690
Frame 2 hits (HSPs): ________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 690
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00888A: Cyclic nucleotide-binding doma 483..499
BLOCKS BL00888B: Cyclic nucleotide-binding doma 501..524
BLOCKS BL00888C: Cyclic nucleotide-binding doma 539..548
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..162
Entrez Transmembrane region: H1 (POTENTIAL). 163..183
Entrez Domain: EXTRACELLULAR (POTENTIAL). 184..196
Entrez Transmembrane region: H2 (POTENTIAL). 197..215
Entrez Domain: CYTOPLASMIC (POTENTIAL). 216..239
Entrez Transmembrane region: H3 (POTENTIAL). 240..259
Entrez Domain: EXTRACELLULAR (POTENTIAL). 260..297
Entrez Transmembrane region: H4 (POTENTIAL). 298..320
Entrez Domain: CYTOPLASMIC (POTENTIAL). 321..372
Entrez Transmembrane region: H5 (POTENTIAL). 373..392
Entrez Domain: EXTRACELLULAR (POTENTIAL). 393..476
Entrez Transmembrane region: H6 (POTENTIAL). 477..497
Entrez Domain: CYTOPLASMIC (POTENTIAL). 498..690
Entrez np-binding site: CGMP (POTENTIAL). 485..607
Entrez binding site: CGMP (POTENTIAL). 544
Entrez binding site: CGMP (POTENTIAL). 559
Entrez glycosylation site: POTENTIAL. 423
PFAM CNG_membrane: Transmembrane region cycli 238..463
PFAM cNMP_binding: Cyclic nucleotide-binding 492..588
PRODOM PD010441: CNG1(5) O08659(1) 1..93
PRODOM PD001039: CNG1(6) CNG2(4) CNG3(2) 154..299
PRODOM PD186146: CNG1(5) CNG2(4) CNG(2) 301..348
PRODOM PD000141: CIK4(6) CNG1(6) CIK1(4) 350..421
PRODOM PD002152: CNG1(6) CNG2(4) CNG3(2) 424..486
PRODOM PD000171: KAPR(25) KAP0(8) KGP2(8) 488..601
PRODOM PD004548: CNG1(6) CNG2(4) CNG3(2) 614..664
PRODOM PD080667: CNG1_BOVIN 666..689
PROSITE CNMP_BINDING_1: Cyclic nucleotide-bindin 504..520
PROSITE CNMP_BINDING_2: Cyclic nucleotide-bindin 542..565
__________________
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.027, P = 0.027
Identities = 24/91 (26%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E F +A +G+L+FA ++GNI + + +
Sbjct: 343 LARKYVYSLYWSTLTLTTI-GETPPPVRDSEYFFVVADFLIGVLIFATIVGNIGSMISNM 401
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 402 NAARAEFQARIDAIKQYMHFRNVSKDMEKRV 432
>gi|2642592|gb|AAB87065.1| (AF031943) cyclic nucleotide-gated cation channel
[Rattus norvegicus]
Length = 252
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | || 252
0 50 100 150 200 250
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.031, P = 0.031
Identities = 19/64 (29%), Positives = 36/64 (56%), Frame = +2
Query: 188 KKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGR 367
+KY+YSL+W ++T+ G P E LF + +G+L+FA ++GN+ + + +
Sbjct: 9 RKYIYSLYWSTLTLTTI-GETPPPVKDEEYLFVVIDFLVGVLIFATIVGNVGSMISNMNA 67
Query: 368 RKLE 379
+ E
Sbjct: 68 SRAE 71
>gi|4502917 ref|NP_001289.1| cyclic nucleotide gated channel alpha 3 [Homo
sapiens] >gi|11429815 ref|XP_002495.1| cyclic nucleotide gated
channel alpha 3 [Homo sapiens] >gi|3153887|gb|AAC17440.1|
(AF065314) cone photoreceptor cGMP-gated channel alpha subunit
[Homo sapiens]
Length = 694
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 694
0 150 300 450 600
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.038, P = 0.037
Identities = 21/79 (26%), Positives = 42/79 (53%), Frame = +2
Query: 143 IYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFA 322
+Y N + + + +KY+YSL+W ++T+ G P E LF + +G+L+FA
Sbjct: 336 VYPN-ISIPEHGRLSRKYIYSLYWSTLTLTTI-GETPPPVKDEEYLFVVVDFLVGVLIFA 393
Query: 323 ILIGNIQNFLQALGRRKLE 379
++GN+ + + + + E
Sbjct: 394 TIVGNVGSMISNMNASRAE 412
>gi|7441594|pir||S74179 cyclic nucleotide-gated channel protein - human
Length = 695
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 695
0 150 300 450 600
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.038, P = 0.037
Identities = 21/79 (26%), Positives = 42/79 (53%), Frame = +2
Query: 143 IYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFA 322
+Y N + + + +KY+YSL+W ++T+ G P E LF + +G+L+FA
Sbjct: 336 VYPN-ISIPEHGRLSRKYIYSLYWSTLTLTTI-GETPPPVKDEEYLFVVVDFLVGVLIFA 393
Query: 323 ILIGNIQNFLQALGRRKLE 379
++GN+ + + + + E
Sbjct: 394 TIVGNVGSMISNMNASRAE 412
>gi|4826633|emb|CAB42891.1| (AJ238239) cyclic nucleotide-gated channel [Mus
musculus]
Length = 537
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 537
0 150 300 450
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.056, P = 0.055
Identities = 19/64 (29%), Positives = 37/64 (57%), Frame = +2
Query: 188 KKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGR 367
+KY+YSL+W ++T+ G P E LF + +G+L+FA ++GN+ + + +
Sbjct: 197 RKYIYSLYWSTLTLTTI-GETPPPVKDEEYLFVVIDFLVGILIFATIVGNVGSMISNMNA 255
Query: 368 RKLE 379
++E
Sbjct: 256 PRVE 259
>gi|12730164 ref|XP_003334.2| cyclic nucleotide gated channel alpha 1 [Homo
sapiens]
Length = 578
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 578
0 150 300 450
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.062, P = 0.060
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 233 LARKYVYSLYWSTLTLTTI-GETPPPVRDSEYVFVVVDFLIGVLIFATIVGNIGSMISNM 291
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 292 NAARAEFQARIDAIKQYMHFRNVSKDMEKRV 322
>gi|7688041|emb|CAB89685.1| (AJ243933) cyclic nucleotide-gated channel
alpha-subunit [Mus musculus]
Length = 631
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 631
0 150 300 450 600
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.069, P = 0.067
Identities = 19/64 (29%), Positives = 37/64 (57%), Frame = +2
Query: 188 KKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGR 367
+KY+YSL+W ++T+ G P E LF + +G+L+FA ++GN+ + + +
Sbjct: 291 RKYIYSLYWSTLTLTTI-GETPPPVKDEEYLFVVIDFLVGILIFATIVGNVGSMISNMNA 349
Query: 368 RKLE 379
++E
Sbjct: 350 PRVE 353
>gi|2493754|sp|Q24278|CNG_DROME CYCLIC-NUCLEOTIDE-GATED CATION CHANNEL (CNG
CHANNEL) >gi|1079165|pir||S52072 DmCNGC protein - fruit fly
(Drosophila sp.) >gi|908846|emb|CAA61760.1| (X89601) CNG channel
[Drosophila melanogaster]
Length = 665
Frame 2 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 665
0 150 300 450 600
__________________
Annotated Domains:
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..110
Entrez Transmembrane region: H1 (POTENTIAL). 111..131
Entrez Domain: EXTRACELLULAR (POTENTIAL). 132..138
Entrez Transmembrane region: H2 (POTENTIAL). 139..159
Entrez Domain: CYTOPLASMIC (POTENTIAL). 160..186
Entrez Transmembrane region: H3 (POTENTIAL). 187..207
Entrez Domain: EXTRACELLULAR (POTENTIAL). 208..253
Entrez Transmembrane region: H4 (POTENTIAL). 254..274
Entrez Domain: CYTOPLASMIC (POTENTIAL). 275..325
Entrez Transmembrane region: H5 (POTENTIAL). 326..346
Entrez Domain: EXTRACELLULAR (POTENTIAL). 347..481
Entrez Transmembrane region: H6 (POTENTIAL). 482..502
Entrez Domain: CYTOPLASMIC (POTENTIAL). 503..665
Entrez np-binding site: CAMP (BY SIMILARITY). 437..559
Entrez binding site: CAMP (POTENTIAL). 496
Entrez binding site: CAMP (POTENTIAL). 511
Entrez glycosylation site: POTENTIAL. 135
PFAM CNG_membrane: Transmembrane region cycli 182..415
PFAM cNMP_binding: Cyclic nucleotide-binding 444..540
PRODOM PD108739: CNG_DROME 1..98
PRODOM PD001039: CNG1(6) CNG2(4) CNG3(2) 100..251
PRODOM PD186146: CNG1(5) CNG2(4) CNG(2) 254..300
PRODOM PD000141: CIK4(6) CNG1(6) CIK1(4) 302..360
PRODOM PD002152: CNG1(6) CNG2(4) CNG3(2) 375..437
PRODOM PD000171: KAPR(25) KAP0(8) KGP2(8) 441..554
PRODOM PD004548: CNG1(6) CNG2(4) CNG3(2) 574..613
PRODOM PD080677: CNG_DROME 615..664
PROSITE CNMP_BINDING_1: Cyclic nucleotide-bindin 456..472
PROSITE CNMP_BINDING_2: Cyclic nucleotide-bindin 494..517
__________________
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.074, P = 0.071
Identities = 26/99 (26%), Positives = 47/99 (47%), Frame = +2
Query: 128 GFSYGIYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMG 307
GFS + + T + ++Y+YS +W ++T+ P V E LF +A G
Sbjct: 277 GFSSDSWVYNLNGTRNNTLQRQYIYSFYWSTLTLTTIGETPTPENDV-EYLFVVADFLAG 335
Query: 308 LLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXR 424
+L+FA ++GNI + + + ++E G +M R
Sbjct: 336 VLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFR 374
>gi|7302962|gb|AAF58033.1| (AE003807) Cng gene product [Drosophila
melanogaster]
Length = 665
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 665
0 150 300 450 600
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.074, P = 0.071
Identities = 26/99 (26%), Positives = 47/99 (47%), Frame = +2
Query: 128 GFSYGIYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMG 307
GFS + + T + ++Y+YS +W ++T+ P V E LF +A G
Sbjct: 277 GFSSDSWVYNLNGTRNNTLQRQYIYSFYWSTLTLTTIGETPTPENDV-EYLFVVADFLAG 335
Query: 308 LLLFAILIGNIQNFLQALGRRKLEMPL*KPGC*PWMTXR 424
+L+FA ++GNI + + + ++E G +M R
Sbjct: 336 VLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFR 374
>gi|346350|pir||A44842 cGMP-gated ion channel protein - human
>gi|252854|gb|AAB22778.1| (S42457) rod photoreceptor cGMP-gated
channel [human, retina, Peptide, 686 aa] [Homo sapiens]
>gi|1246139|gb|AAB36034.1| cGMP-gated cation channel, PCASM channel
[swine, coronary artery smooth muscle PCASM, Peptide, 686 aa]
>gi|4099275|gb|AAD05039.1| (U85404) cGMP-gated cation channel [Sus
scrofa]
Length = 686
Frame 2 hits (HSPs): ________
Annotated Domains: __________
__________________________________________________
Database sequence: | | | | | | 686
0 150 300 450 600
__________________
Annotated Domains:
Entrez domain: cAMP receptor protein cyclic nuc 475..599
PROSITE CNMP_BINDING_1: Cyclic nucleotide-bindin 502..518
PROSITE CNMP_BINDING_2: Cyclic nucleotide-bindin 540..563
__________________
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.077, P = 0.074
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 341 LARKYVYSLYWSTLTLTTI-GETPPPVRDSEYVFVVVDFLIGVLIFATIVGNIGSMISNM 399
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 400 NAARAEFQARIDAIKQYMHFRNVSKDMEKRV 430
>gi|2506302|sp|P29973|CNG1_HUMAN CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC
NUCLEOTIDE GATED CHANNEL, PHOTORECEPTOR) (CYCLIC-NUCLEOTIDE-GATED
CATION CHANNEL 1) (CNG CHANNEL 1) (CNG-1) (CNG1)
Length = 686
Frame 2 hits (HSPs): ________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 686
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00888A: Cyclic nucleotide-binding doma 481..497
BLOCKS BL00888B: Cyclic nucleotide-binding doma 499..522
BLOCKS BL00888C: Cyclic nucleotide-binding doma 537..546
DOMO DM01751: CAMPRECEPTORPROTEINCYCLICNUCLEO 126..309
DOMO DM01165: CAMPRECEPTORPROTEINCYCLICNUCLEO 311..684
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..160
Entrez Transmembrane region: H1 (POTENTIAL). 161..181
Entrez Domain: EXTRACELLULAR (POTENTIAL). 182..194
Entrez Transmembrane region: H2 (POTENTIAL). 195..213
Entrez Domain: CYTOPLASMIC (POTENTIAL). 214..237
Entrez Transmembrane region: H3 (POTENTIAL). 238..257
Entrez Domain: EXTRACELLULAR (POTENTIAL). 258..295
Entrez Transmembrane region: H4 (POTENTIAL). 296..318
Entrez Domain: CYTOPLASMIC (POTENTIAL). 319..370
Entrez Transmembrane region: H5 (POTENTIAL). 371..390
Entrez Domain: EXTRACELLULAR (POTENTIAL). 391..474
Entrez Transmembrane region: H6 (POTENTIAL). 475..495
Entrez Domain: CYTOPLASMIC (POTENTIAL). 496..686
Entrez np-binding site: CGMP (POTENTIAL). 483..605
Entrez binding site: CGMP (POTENTIAL). 542
Entrez binding site: CGMP (POTENTIAL). 557
Entrez glycosylation site: POTENTIAL. 421
PFAM CNG_membrane: Transmembrane region cycli 236..461
PFAM cNMP_binding: Cyclic nucleotide-binding 490..586
PRODOM PD010441: CNG1(5) O08659(1) 1..92
PRODOM PD001039: CNG1(6) CNG2(4) CNG3(2) 152..297
PRODOM PD186146: CNG1(5) CNG2(4) CNG(2) 299..346
PRODOM PD000141: CIK4(6) CNG1(6) CIK1(4) 348..419
PRODOM PD002152: CNG1(6) CNG2(4) CNG3(2) 422..484
PRODOM PD000171: KAPR(25) KAP0(8) KGP2(8) 486..599
PRODOM PD004548: CNG1(6) CNG2(4) CNG3(2) 612..662
PRODOM PD080665: CNG1_HUMAN 664..685
PROSITE CNMP_BINDING_1: Cyclic nucleotide-bindin 502..518
PROSITE CNMP_BINDING_2: Cyclic nucleotide-bindin 540..563
__________________
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.077, P = 0.074
Identities = 23/91 (25%), Positives = 46/91 (50%), Frame = +2
Query: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
+ +KYVYSL+W ++T+ G P E +F + +G+L+FA ++GNI + + +
Sbjct: 341 LARKYVYSLYWSTLTLTTI-GETPPPVRDSEYVFVVVDFLIGVLIFATIVGNIGSMISNM 399
Query: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
+ E +M R + ++ +K +
Sbjct: 400 NAARAEFQARIDAIKQYMHFRNVSKDMEKRV 430
WARNING: HSPs involving 42 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.350 0.156 0.546
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.331 0.147 0.487
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.351 0.152 0.622
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.367 0.163 0.605
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.338 0.147 0.473
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.347 0.153 0.546
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 151 148 10. 74 3 12 22 0.091 34
30 0.11 36
+2 0 151 148 10. 74 3 12 22 0.091 34
30 0.11 36
+1 0 151 148 10. 74 3 12 22 0.091 34
30 0.11 36
-1 0 151 147 10. 74 3 12 22 0.12 33
30 0.11 36
-2 0 151 148 10. 74 3 12 22 0.091 34
30 0.11 36
-3 0 151 148 10. 74 3 12 22 0.091 34
30 0.11 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 92
No. of states in DFA: 597 (59 KB)
Total size of DFA: 196 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 150.63u 1.09s 151.72t Elapsed: 00:00:26
Total cpu time: 150.69u 1.13s 151.82t Elapsed: 00:00:26
Start: Mon Oct 1 22:46:30 2001 End: Mon Oct 1 22:46:56 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000