Join Evaluation Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <100 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.1%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.1%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

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Alignment for AC158783.5 and AC105174.7

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AC158783.5 Mus musculus chromosome 5, clone RP23-144P3, complete sequence [htgs_phase3]

Length: 193,276 bp

AC105174.7 Mus musculus chromosome 5, clone RP24-230L5, complete sequence [htgs_phase3]

Length: 179,947 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 25687
Total Length: 8373
Aligned Length: 8373
Percent Identity: 100
Number of Gaps: 0
Number of Mismatches: 0
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Alignment 1 of 1

 Mismatches = 0, Gaps = 0, Length = 8373
 Percent identity = 100%
 Score = 1.66e+04 bits (8373), Expect = 0
  4 BAC and 3 Fosmid bridging clones.
  4 BAC and 3 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AC158783.5 >184904  gatccagataacaacagcacccacactttgagccatgatgaaggacagagtggagatata 184963 
AC105174.7 >1       ............................................................ 60     

AC158783.5 >184964  cctgtgtggcactgagcatgaagtctagaacctcagcaaccctccttgaaatctggtgtg 185023 
AC105174.7 >61      ............................................................ 120    

AC158783.5 >185024  tgatccaacaaggaccactgaggatactatatgagaaccttctctctctaacctctacgg 185083 
AC105174.7 >121     ............................................................ 180    

AC158783.5 >185084  ctttcaactaatccctcagaagtagtcctttgcctgtgtggaacgttctgctctacttcc 185143 
AC105174.7 >181     ............................................................ 240    

AC158783.5 >185144  cagcctgtgtgcatgcattcagagtaccccagcctcagaaaacctccagcagcctaactt 185203 
AC105174.7 >241     ............................................................ 300    

AC158783.5 >185204  gcctgctcaactatgtctttttgatctgacagaactttccccaaaagcctcaggcccctt 185263 
AC105174.7 >301     ............................................................ 360    

AC158783.5 >185264  tctaccctcatccacatctcttagatatctatacagaaaagcttaaggtttctttccaaa 185323 
AC105174.7 >361     ............................................................ 420    

AC158783.5 >185324  gtccacctacaccttgcctttctccctagtctcactccagttgatacagttactaacccg 185383 
AC105174.7 >421     ............................................................ 480    

AC158783.5 >185384  gtccttatctgtcactatctacctactcacttttccttgtccttccccaatgggctcaat 185443 
AC105174.7 >481     ............................................................ 540    

AC158783.5 >185444  ggctgctggctctgagtcattttcattggttaatgaatctctccagaatcactgtctctt 185503 
AC105174.7 >541     ............................................................ 600    

AC158783.5 >185504  acctgtattaacattttcttaggtaaagccatatgaataagtttttttggttaggtcaaa 185563 
AC105174.7 >601     ............................................................ 660    

AC158783.5 >185564  atgaacaaatagctggcacacacctttaatcccagcactctggaggcagaggctgagttt 185623 
AC105174.7 >661     ............................................................ 720    

AC158783.5 >185624  gacgacagcctgctctatctacatagtgagtttcaggacagtcagtgctaagtagagaga 185683 
AC105174.7 >721     ............................................................ 780    

AC158783.5 >185684  cagtctcaaaaaaaatcaaaacaaagcaaaccaaaatcaaaataaatagtagtaatttca 185743 
AC105174.7 >781     ............................................................ 840    

AC158783.5 >185744  aataatttatcctcagtaaaatatattccttctacttcactaaagatatttttgaagtgt 185803 
AC105174.7 >841     ............................................................ 900    

AC158783.5 >185804  atttcttaaacactgtgtgtgtgttaggaattttatctatgggataaacaccataattaa 185863 
AC105174.7 >901     ............................................................ 960    

AC158783.5 >185864  agtaacttggggaggatcacatacccagaagtgacatcacccagagtagggtaggccctc 185923 
AC105174.7 >961     ............................................................ 1020   

AC158783.5 >185924  cctgcatcaatcattgatcaagaaaatgcaccacaggccaataagttgaggtactttctt 185983 
AC105174.7 >1021    ............................................................ 1080   

AC158783.5 >185984  aattaaaatctcctcctctcaggaaaccctagcttgtgacaagttgacaaaaacaacagc 186043 
AC105174.7 >1081    ............................................................ 1140   

AC158783.5 >186044  taactagttaagacatacacccttccttaacttttgtacaatcggtgcctagcagagtac 186103 
AC105174.7 >1141    ............................................................ 1200   

AC158783.5 >186104  caggcaagaagacagtgaagaaatgcttgtagaacttaaatattgctatgaatgaacctt 186163 
AC105174.7 >1201    ............................................................ 1260   

AC158783.5 >186164  aacaccatgtggagctcccttaggtactcttggcttagtcttttctttattttttgaggt 186223 
AC105174.7 >1261    ............................................................ 1320   

AC158783.5 >186224  cttacaaaattaaaactagctacctatgactgtcttctgtaggaagaactatagatatga 186283 
AC105174.7 >1321    ............................................................ 1380   

AC158783.5 >186284  gtggttccttttcccttccccatagccaccaagacctagttttctccaccaaccaaccaa 186343 
AC105174.7 >1381    ............................................................ 1440   

AC158783.5 >186344  taatgagctagccaagccagggaaaaacatggttccagggttgttcttcccttagctatc 186403 
AC105174.7 >1441    ............................................................ 1500   

AC158783.5 >186404  aagtacataatgtattgacaccattcacagcatctcattcattcattcatttgttcaatt 186463 
AC105174.7 >1501    ............................................................ 1560   

AC158783.5 >186464  atggaagagtgatagagtttgaaaataaaacaaggaataaagaagacaactagatatttg 186523 
AC105174.7 >1561    ............................................................ 1620   

AC158783.5 >186524  aattgcctttattttctatgacttttgagtattttccttacaaattacctgagaaaattt 186583 
AC105174.7 >1621    ............................................................ 1680   

AC158783.5 >186584  tagatattttaaaaagttgtgtagttaaatactttcaaacatattatgcactttatgtca 186643 
AC105174.7 >1681    ............................................................ 1740   

AC158783.5 >186644  tctaaaaatataagttgaaagtgctgcaaaacatatcattttctctttatagtgacattg 186703 
AC105174.7 >1741    ............................................................ 1800   

AC158783.5 >186704  ttatgttaaatgaacttaatggatcttttgaaaggtatccaatgacctataactatttgg 186763 
AC105174.7 >1801    ............................................................ 1860   

AC158783.5 >186764  tttccatgagaacctgttaaaaataggaaactggtcctttgtaaaacttggaaattttaa 186823 
AC105174.7 >1861    ............................................................ 1920   

AC158783.5 >186824  atattccttatttttccttgacttcacttatacctcatacctcatacctctctctctctc 186883 
AC105174.7 >1921    ............................................................ 1980   

AC158783.5 >186884  tctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttaggacac 186943 
AC105174.7 >1981    ............................................................ 2040   

AC158783.5 >186944  ttcatgaataccatatgtatgagtatgaaaacagagagatcacactttcttccagaaaac 187003 
AC105174.7 >2041    ............................................................ 2100   

AC158783.5 >187004  ttcgggaatttcaatttaaaaacatattaatttgtattgcaagaaacataaaatattgac 187063 
AC105174.7 >2101    ............................................................ 2160   

AC158783.5 >187064  aaataggttagaaatgaattctgacagactgtaaagaatacacaaattaaaataatacag 187123 
AC105174.7 >2161    ............................................................ 2220   

AC158783.5 >187124  atctaatgaaatgctacattttacttattatacaaagaaagtggtatgttattatggcag 187183 
AC105174.7 >2221    ............................................................ 2280   

AC158783.5 >187184  tcttcataactaatttgtgaacagtaatatatgtataatctatgaaatgatggctattat 187243 
AC105174.7 >2281    ............................................................ 2340   

AC158783.5 >187244  cattcctctcatagaaaaaaaatgagatcctttttattcagaaggtagaagatgtcaaaa 187303 
AC105174.7 >2341    ............................................................ 2400   

AC158783.5 >187304  tagagcaatgatgcttcacttctatggcatcttcaatgggcacttcagcctcaaagataa 187363 
AC105174.7 >2401    ............................................................ 2460   

AC158783.5 >187364  aagtagataattaaggaacagaagacagaatccatataaaatagaacctgaaagaactaa 187423 
AC105174.7 >2461    ............................................................ 2520   

AC158783.5 >187424  actggccctattagtattgaataaaatatacttaagacaagttttgttactacagacaaa 187483 
AC105174.7 >2521    ............................................................ 2580   

AC158783.5 >187484  agacctaaagcaaatgggtcagtacactgagaagcaaaactaaagcagtcttcaaaaaag 187543 
AC105174.7 >2581    ............................................................ 2640   

AC158783.5 >187544  tgaactgaaattcataatttaaggtacaaatagatatttgacaatatttggaaacatcca 187603 
AC105174.7 >2641    ............................................................ 2700   

AC158783.5 >187604  tggttcattttccctaatgagtacaataataaaagacaaacaggaaatgacataaagcaa 187663 
AC105174.7 >2701    ............................................................ 2760   

AC158783.5 >187664  ttaaaatattttgttgagaagagccctgtcctgtgtagcttaactgctgaatcttaccac 187723 
AC105174.7 >2761    ............................................................ 2820   

AC158783.5 >187724  aaactttaaggatggtgattaatgtttcaaacattcttataaataaattacaaaatggta 187783 
AC105174.7 >2821    ............................................................ 2880   

AC158783.5 >187784  atacttctcattctttgaggtcagtattatatccctgatactacaatcagactaaaacat 187843 
AC105174.7 >2881    ............................................................ 2940   

AC158783.5 >187844  cacaagataaaaacactataacaactcagtgttcttatgagtgtacattcatgtggtctg 187903 
AC105174.7 >2941    ............................................................ 3000   

AC158783.5 >187904  taatgatatttcagacactgtgtatgtacaacagtgatcccataaggctgtgtcacatag 187963 
AC105174.7 >3001    ............................................................ 3060   

AC158783.5 >187964  caacagtgtggacatcttcagtttgtgtagatatacgctttgatggttaaacaactaggc 188023 
AC105174.7 >3061    ............................................................ 3120   

AC158783.5 >188024  tgcctaatgacacaaccacttaacactgtctttatcagaagaactctcataattaggtac 188083 
AC105174.7 >3121    ............................................................ 3180   

AC158783.5 >188084  aaggatccccaacaaaatatagcagtttaaatctaatgaccaaatgggatttatcccagg 188143 
AC105174.7 >3181    ............................................................ 3240   

AC158783.5 >188144  aaaacaaggttggtttcaaatctaaaacatactgtggccgggcagtggtggtgcacgctt 188203 
AC105174.7 >3241    ............................................................ 3300   

AC158783.5 >188204  ttaattccagcactcgggaggcagaggcaggcagatttctgagttcgaggccagcctggt 188263 
AC105174.7 >3301    ............................................................ 3360   

AC158783.5 >188264  ctacagagtgagttccagaacagccaggctacacagggaaacactgtctcgagaaaccaa 188323 
AC105174.7 >3361    ............................................................ 3420   

AC158783.5 >188324  aaaacaaaacaaaacaaaacaaaacaaaacaaacaaacaaacaaaacatactgttaccac 188383 
AC105174.7 >3421    ............................................................ 3480   

AC158783.5 >188384  atggtgatttagtagcccacactcatctccacagacttaggaacaatgaagaagtgataa 188443 
AC105174.7 >3481    ............................................................ 3540   

AC158783.5 >188444  cttgtatagccattgtataataatattttatatacaagactaacaaaacataacacaaca 188503 
AC105174.7 >3541    ............................................................ 3600   

AC158783.5 >188504  ttaaaaatgctgttactagaaaattttgcattacatatgtggttcagcttgtgatttgta 188563 
AC105174.7 >3601    ............................................................ 3660   

AC158783.5 >188564  ttatatatctagcaaactatgatcgtgtagaagtttcctactttaaggacctatgttcta 188623 
AC105174.7 >3661    ............................................................ 3720   

AC158783.5 >188624  tctatatgaagcattttcacacgtttttcctctgttatttatgagagacagataatggtt 188683 
AC105174.7 >3721    ............................................................ 3780   

AC158783.5 >188684  aaccggcctagattaaccagtaacaccatataggtgacatcactgccactggactgcatc 188743 
AC105174.7 >3781    ............................................................ 3840   

AC158783.5 >188744  tggctttatagataaaatttcccctccttacatcactgattggattaagcattgcattga 188803 
AC105174.7 >3841    ............................................................ 3900   

AC158783.5 >188804  tatatttaactttccaaattgttttccttgattttggaatatctgaagaatttagtgtct 188863 
AC105174.7 >3901    ............................................................ 3960   

AC158783.5 >188864  gttttcatttggacttatccttcaaccatttacagtagttgcactgctaccaagatcgcc 188923 
AC105174.7 >3961    ............................................................ 4020   

AC158783.5 >188924  atttacccgcatgctgtttagtgactgtttttattttcatttctcagtttcctaccattg 188983 
AC105174.7 >4021    ............................................................ 4080   

AC158783.5 >188984  tgctcacccaggtagctttctagaccctcctcccccccccccaaactacatggcagatga 189043 
AC105174.7 >4081    ............................................................ 4140   

AC158783.5 >189044  tacatatgtcgttttctttggttctcttatgtgaacatttagacttgtcagatactatag 189103 
AC105174.7 >4141    ............................................................ 4200   

AC158783.5 >189104  accattctttatttaaatattcataattatccccatttcagttgagattgttactaccct 189163 
AC105174.7 >4201    ............................................................ 4260   

AC158783.5 >189164  cccgatgacaaccctgaggtttgtcatttattaccaaatgtataagtaatagagtgtatg 189223 
AC105174.7 >4261    ............................................................ 4320   

AC158783.5 >189224  gtaattgagttgtatttttggttctacatccactggacaatccacaacactgctttggat 189283 
AC105174.7 >4321    ............................................................ 4380   

AC158783.5 >189284  atgagctaaacacagacttcagaaacaacgaaatgctcctatatacaatttatgtcatta 189343 
AC105174.7 >4381    ............................................................ 4440   

AC158783.5 >189344  tgaaaatagctacatgatttttctatataagcttgctgttatccttcttgaaaatcagtc 189403 
AC105174.7 >4441    ............................................................ 4500   

AC158783.5 >189404  atttcttattgttataggttatagtcttcatatttagaatgattcacgagtataaaagaa 189463 
AC105174.7 >4501    ............................................................ 4560   

AC158783.5 >189464  ttttagatgtccaataggtgccttcagacgttcctgaagggccctctaggattccacagg 189523 
AC105174.7 >4561    ............................................................ 4620   

AC158783.5 >189524  agaggtggggagtaaactggagttgacagtgatgaggacacacattcaccaggacaaggt 189583 
AC105174.7 >4621    ............................................................ 4680   

AC158783.5 >189584  ccagcatcagtctttgctcagaatgttttctctctactgtgcataatcaatctttgtaca 189643 
AC105174.7 >4681    ............................................................ 4740   

AC158783.5 >189644  aatgccaggtagcgatgctctctgctaaacatgtggtatgtccttcctttttattgacta 189703 
AC105174.7 >4741    ............................................................ 4800   

AC158783.5 >189704  ttcatagcttccaaaataagcaggaatttccatcttctgggtttcctcagatattaaaat 189763 
AC105174.7 >4801    ............................................................ 4860   

AC158783.5 >189764  caaatctaatagatgcaatgctttcatccatatagagtctaaatattgactatttagtaa 189823 
AC105174.7 >4861    ............................................................ 4920   

AC158783.5 >189824  aaatgaacctttatttttctctgcatagaataatttaacaattgaaggagaatgctttgc 189883 
AC105174.7 >4921    ............................................................ 4980   

AC158783.5 >189884  agaatgtagggagaaatgagaactaaatgaaatttatctaatatatactgccagggctca 189943 
AC105174.7 >4981    ............................................................ 5040   

AC158783.5 >189944  ttctgctaataagacaagagagaaacggaaaggcacatttgatgaatctcactgagttgt 190003 
AC105174.7 >5041    ............................................................ 5100   

AC158783.5 >190004  tgtggaatacacattttgaaaataaaatgctttctctaaagtcactagtgccaactgttc 190063 
AC105174.7 >5101    ............................................................ 5160   

AC158783.5 >190064  tttagtcagttgtcactgtgaaggcttgaagtattagtctttctatctttattttattgt 190123 
AC105174.7 >5161    ............................................................ 5220   

AC158783.5 >190124  agaaataactgttagtttattttctcctttcaaggttttgaaagcatttgctactttaca 190183 
AC105174.7 >5221    ............................................................ 5280   

AC158783.5 >190184  attataatcatgtaatatttatgggcacacagtgatgttattgcattagttaatcattgt 190243 
AC105174.7 >5281    ............................................................ 5340   

AC158783.5 >190244  caagttgactggatttagatttatctgggagaggggccatacctttgggtacatctatgt 190303 
AC105174.7 >5341    ............................................................ 5400   

AC158783.5 >190304  ggtcatttccagaaaagattaatcgagggtaagagacattctctgaatgcagatggtgcc 190363 
AC105174.7 >5401    ............................................................ 5460   

AC158783.5 >190364  ctcccatgagctgtgagcccagaataagaagagaaagacagctgaatgacagcatccctg 190423 
AC105174.7 >5461    ............................................................ 5520   

AC158783.5 >190424  ccctccacttcttagccactgagaactgaaaaggggttccttgccacacattcatgccat 190483 
AC105174.7 >5521    ............................................................ 5580   

AC158783.5 >190484  tctgatattctctgtgaagaagcacatggggcctgaactatctgaaagcatgagccaaaa 190543 
AC105174.7 >5581    ............................................................ 5640   

AC158783.5 >190544  taagtccttcctcccttaaattgtttatatcaggtgttctcattacactaaggagactat 190603 
AC105174.7 >5641    ............................................................ 5700   

AC158783.5 >190604  cagacacaatgatatatacacaatagaatgagtcaatcaggatagttaaccctgccgtcc 190663 
AC105174.7 >5701    ............................................................ 5760   

AC158783.5 >190664  ccctatttgattatgatttcaagttgacctgtaacttttaccctttacccatcggctctt 190723 
AC105174.7 >5761    ............................................................ 5820   

AC158783.5 >190724  catctttccctagcacctagcctcctgaactcacattctgttttctgcttttatgacttc 190783 
AC105174.7 >5821    ............................................................ 5880   

AC158783.5 >190784  agctgatttagatggacagttgaggtcatgtggtgtctaatttttatgtgtcctgcttgt 190843 
AC105174.7 >5881    ............................................................ 5940   

AC158783.5 >190844  ctcatctagaataatctcttttaaaggctcaatagcatgccactgtggatatataactac 190903 
AC105174.7 >5941    ............................................................ 6000   

AC158783.5 >190904  attttccctcttcatccatgtgttcattgatggacacttagggcgattccctggcttagc 190963 
AC105174.7 >6001    ............................................................ 6060   

AC158783.5 >190964  actgaaataaagctgtaatgaatgttaagagtgtggctacgtcctcaacattctgacttc 191023 
AC105174.7 >6061    ............................................................ 6120   

AC158783.5 >191024  aagtccttaggatagtggggactgcaccttcatagctcagtgggaggatgctaggctggt 191083 
AC105174.7 >6121    ............................................................ 6180   

AC158783.5 >191084  atgcacaaggctctggtttcgatcacaaaaccaaaacaaaacaaaatatcctaaccattg 191143 
AC105174.7 >6181    ............................................................ 6240   

AC158783.5 >191144  tttctaagtgcaggcccattactgtggctcattcttgctaagaaatagtcgtttctttga 191203 
AC105174.7 >6241    ............................................................ 6300   

AC158783.5 >191204  ctctacctgaattctacccaaaggaccacttaagggagcaggacaaaggggaagcaggtg 191263 
AC105174.7 >6301    ............................................................ 6360   

AC158783.5 >191264  gcataagcctggtctgtgaaaacttcccaaaaaaaccaaatttgtttcagagctttgggt 191323 
AC105174.7 >6361    ............................................................ 6420   

AC158783.5 >191324  ctgcatgctgtaatgacagaactgttgtttgctccatctactcaaaagattttaccaaaa 191383 
AC105174.7 >6421    ............................................................ 6480   

AC158783.5 >191384  gagaagggaataaaaatggaaatcccatctcatttacattaggattgagacatatctggg 191443 
AC105174.7 >6481    ............................................................ 6540   

AC158783.5 >191444  tacattcagtcttcctgcagctctgttttactcagtattctgcattcaccatggactcca 191503 
AC105174.7 >6541    ............................................................ 6600   

AC158783.5 >191504  cccatgaccagtcaagcaggactgtgttgcatcaagcctattccagtttattaggccagt 191563 
AC105174.7 >6601    ............................................................ 6660   

AC158783.5 >191564  ttcagtctagaatctcactgttaatgactctctctatacaattaggggtgaggattgtca 191623 
AC105174.7 >6661    ............................................................ 6720   

AC158783.5 >191624  taattctttcaatgacaacacttctgcacaactctgtaatgcatgtattttcagttctat 191683 
AC105174.7 >6721    ............................................................ 6780   

AC158783.5 >191684  ccccaagagtacttctgggactaggatgtctgctatagagtaggtatttgacttaactaa 191743 
AC105174.7 >6781    ............................................................ 6840   

AC158783.5 >191744  gttactagtttctgaaaacaaaaatgaatccataagtgaatgaaaacaaaggactatgta 191803 
AC105174.7 >6841    ............................................................ 6900   

AC158783.5 >191804  aaacatgcccgccacctaaactatgtataacctaatccagatggccagaccttacttaaa 191863 
AC105174.7 >6901    ............................................................ 6960   

AC158783.5 >191864  gagagaagactatagcaagacagctgccagttacaaaggaagagggtctagtcagggtct 191923 
AC105174.7 >6961    ............................................................ 7020   

AC158783.5 >191924  ggcagaactgctgcagggggttgaaggcctgttgcctgggtctgagcatcagagctaaat 191983 
AC105174.7 >7021    ............................................................ 7080   

AC158783.5 >191984  gaccaacctaccttcaaggatcttgtatcgtgtttgagagctacacgttctaatatggga 192043 
AC105174.7 >7081    ............................................................ 7140   

AC158783.5 >192044  aggattctagacgattctgtcaatgagcttatatgtggatggtgcaacaattagaataaa 192103 
AC105174.7 >7141    ............................................................ 7200   

AC158783.5 >192104  gcatttgttttgggtcagcaagaaaacatatcctattaagctttgattgttcttctggct 192163 
AC105174.7 >7201    ............................................................ 7260   

AC158783.5 >192164  tgtatggactgactgctgaatactctgttttcctccatcagaggtatgttagtactatgc 192223 
AC105174.7 >7261    ............................................................ 7320   

AC158783.5 >192224  cccgtgcatcattctgcaagtgtgctttgggattctttccttcctaccttgctttcttcc 192283 
AC105174.7 >7321    ............................................................ 7380   

AC158783.5 >192284  ttttcttcctttcatccttctttcattaggtttcattaggcaattactaaccagtaagaa 192343 
AC105174.7 >7381    ............................................................ 7440   

AC158783.5 >192344  cttattaagcacttgtgattcaggtattgtgacagctaatattactgttcaggtgtcaac 192403 
AC105174.7 >7441    ............................................................ 7500   

AC158783.5 >192404  tgttagaaaaataatttttacacaaggtgagaacatagaaagaggctcaacactaccaca 192463 
AC105174.7 >7501    ............................................................ 7560   

AC158783.5 >192464  tggattcaagaagcataaggcacctgagccagtcccagaaggtaagacaatgttagctac 192523 
AC105174.7 >7561    ............................................................ 7620   

AC158783.5 >192524  ttaaaggaagcagggccatttccgagagtaccaaccatgtgcagaagcagagctgtggaa 192583 
AC105174.7 >7621    ............................................................ 7680   

AC158783.5 >192584  ggtacaactgactcaaaggatggacagggacaagtggttagagtaaagacacaaattgca 192643 
AC105174.7 >7681    ............................................................ 7740   

AC158783.5 >192644  aataagttcttaaggctctactacacttcacaaacttaaatgtggtactgagaagaatca 192703 
AC105174.7 >7741    ............................................................ 7800   

AC158783.5 >192704  caaaggactaagaagtaactattgttcagatccctagacaggtggttacagacaaggaca 192763 
AC105174.7 >7801    ............................................................ 7860   

AC158783.5 >192764  agctggcaggagtgcagttatttttctagagcaataaaaggaaatggttgaggagaggaa 192823 
AC105174.7 >7861    ............................................................ 7920   

AC158783.5 >192824  gtggaaagaaaggctaagatggtggggcagaggaaaaaatgtgaagataaagagcggaga 192883 
AC105174.7 >7921    ............................................................ 7980   

AC158783.5 >192884  tgaactacgacagccttgtctgagaaacatgtctgcagcagaaccgacctcgagggtgag 192943 
AC105174.7 >7981    ............................................................ 8040   

AC158783.5 >192944  agagaggcgggtggaagaggatgagtcatgcttccaccttgggaaactggtgctgtgatg 193003 
AC105174.7 >8041    ............................................................ 8100   

AC158783.5 >193004  atgacatattcccagaccacccagaccaactgaggagtgtcagggttgagggaagatgtt 193063 
AC105174.7 >8101    ............................................................ 8160   

AC158783.5 >193064  agtgtaagcatggacacacattgcatttctgtgtcccagaacataaatgtcacagaaaac 193123 
AC105174.7 >8161    ............................................................ 8220   

AC158783.5 >193124  taaataaactaaattaaaacaggaaggtgaaaaatatgtctttaatctcaaggctaaaca 193183 
AC105174.7 >8221    ............................................................ 8280   

AC158783.5 >193184  gattggaaaatattagcctgtagatattttaaaacaggtgcattgatgggatcatttaga 193243 
AC105174.7 >8281    ............................................................ 8340   

AC158783.5 >193244  gtacgcagaggtaagagaaacaacatggaattc 193276 
AC105174.7 >8341    ................................. 8373

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time
A	193276	8374	+	+	chenhc	Taxid 10090 chrom 5 Reference assembly	2008-11-20 16:52:37.786

Events

Id	Type	Date	Whodid	Comment
39034	ImportOldDb	09/01/2005 22:16:00	f_old_db
39035	ReSetShortOvlp	09/04/2008 10:31:48	dbo
169412	CreateSwitchPt	11/20/2008 16:52:37	chenhc	tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
C3H-110F2				AC158783.5	100%	pos 97533 (F-)
C3H-110N19				AC158783.5	99.47%	pos 176380 (F-)
C3H-123L3	AC158783.5	99.72%	pos 101421 (R+)	AC105174.7	99.22%	pos 67921 (F-)
C3H-124G3				AC158783.5	99.62%	pos 11794 (F+)
C3H-124G3				AC158783.5	100%	pos 11878 (F+)
C3H-14G6	AC105174.7	99.86%	pos 161649 (R+)
CH29-159B22				AC158783.5	100%	pos 141668 (F+)
CH29-179D7	AC158783.5	99.05%	pos 47505 (R+)	AC105174.7	99.88%	pos 110564 (F-)
CH29-501G8	AC158783.5	99.26%	pos 169005 (R-)
CH29-514G5	AC105174.7	99.69%	pos 44278 (R-)
CH29-567F16	AC158783.5	99.3%	pos 169168 (R+)	AC105174.7	99.85%	pos 146050 (F-)
CH29-568J7	AC158783.5	99.73%	pos 179910 (R-)
CH29-605K12	AC105174.7	99.48%	pos 26423 (R+)
CH29-608I4	AC105174.7	100%	pos 118341 (R+)
RP24-122G5	AC158783.5	99.83%	pos 96282 (R-)
RP24-223K5	AC105174.7	99.04%	pos 19347 (R-)
RP24-223M5	AC105174.7	99.48%	pos 19331 (R-)	AC158783.5	100%	pos 45542 (F+)
RP24-230L5	AC158783.5	99.41%	pos 184916 (R+)
RP24-230L5	AC105174.7	99.41%	pos 13 (R+)
RP24-264E10				AC105174.7	99.25%	pos 51506 (F+)
RP24-267K3				AC105174.7	99.71%	pos 83982 (F-)
RP24-335O12				AC158783.5	99.47%	pos 13454 (F+)
RP24-358L6				AC158783.5	99.82%	pos 136729 (F+)
RP24-84J10	AC158783.5	99.66%	pos 85433 (R+)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
WI1-1037K1	AC105174.7	99.81%	pos 114626 (R+)	AC105174.7	99.41%	pos 155377 (F-)
WI1-1042H3	AC158783.5	99.77%	pos 87853 (R-)	AC158783.5	99.79%	pos 45979 (F+)
WI1-106M16	AC105174.7	100%	pos 13969 (R+)	AC105174.7	100%	pos 54936 (F-)
WI1-1090K23				AC158783.5	99.05%	pos 176097 (F-)
WI1-1177H13	AC158783.5	100%	pos 146071 (R-)	AC158783.5	99.85%	pos 106511 (F+)
WI1-124J7	AC105174.7	99.26%	pos 162872 (R-)	AC105174.7	100%	pos 123731 (F+)
WI1-1264J16	AC158783.5	100%	pos 40981 (R-)
WI1-1297J23	AC105174.7	100%	pos 17093 (R-)	AC158783.5	100%	pos 157888 (F+)
WI1-1315B21	AC158783.5	100%	pos 74486 (R+)
WI1-132O24				AC158783.5	99.42%	pos 175073 (F-)
WI1-1357O6	AC105174.7	99.81%	pos 106080 (R-)	AC105174.7	100%	pos 65310 (F+)
WI1-1377N4	AC158783.5	100%	pos 113828 (R-)	AC158783.5	99.51%	pos 78567 (F+)
WI1-141F7	AC158783.5	99.72%	pos 108095 (R+)	AC158783.5	100%	pos 148990 (F-)
WI1-141M12	AC158783.5	99.43%	pos 108095 (R+)	AC158783.5	100%	pos 148999 (F-)
WI1-1439K23				AC105174.7	99.83%	pos 163507 (F+)
WI1-1515J22				AC158783.5	100%	pos 178542 (F+)
WI1-1537D16	AC105174.7	99.12%	pos 64067 (R-)	AC105174.7	100%	pos 21142 (F+)
WI1-1587A10	AC105174.7	99.6%	pos 60505 (R-)
WI1-1592P15	AC105174.7	99.39%	pos 50140 (R-)
WI1-1675N1	AC158783.5	100%	pos 120273 (R+)	AC158783.5	99.76%	pos 161230 (F-)
WI1-1679F16	AC158783.5	100%	pos 174826 (R+)
WI1-1696A1	AC158783.5	100%	pos 7545 (R+)	AC158783.5	99.4%	pos 50598 (F-)
WI1-1748D24	AC158783.5	100%	pos 146045 (R-)	AC158783.5	99.7%	pos 106522 (F+)
WI1-1764E16				AC158783.5	100%	pos 178574 (F+)
WI1-1815N11	AC158783.5	100%	pos 180310 (R+)	AC105174.7	100%	pos 33649 (F-)
WI1-185N12				AC105174.7	100%	pos 152306 (F+)
WI1-1864J6	AC105174.7	100%	pos 152317 (R-)	AC105174.7	100%	pos 108958 (F+)
WI1-2001L7	AC105174.7	100%	pos 130492 (R-)
WI1-2017F21	AC158783.5	99.43%	pos 189557 (R-)
WI1-2017F21	AC105174.7	99.43%	pos 4654 (R-)
WI1-2044L15	AC105174.7	100%	pos 65988 (R+)	AC105174.7	100%	pos 105065 (F-)
WI1-2203L22	AC105174.7	100%	pos 158438 (R+)
WI1-2219I18	AC105174.7	99.72%	pos 158438 (R+)
WI1-2229C3	AC105174.7	99.6%	pos 167287 (R+)
WI1-2395L21	AC105174.7	99.29%	pos 175377 (R+)
WI1-2442A2	AC105174.7	100%	pos 178045 (R-)	AC105174.7	100%	pos 134839 (F+)
WI1-2453O8	AC158783.5	100%	pos 41690 (R-)	AC158783.5	100%	pos 4359 (F+)
WI1-2663D2	AC158783.5	99.66%	pos 122082 (R-)	AC158783.5	99.74%	pos 77734 (F+)
WI1-2798K7	AC158783.5	100%	pos 101850 (R-)	AC158783.5	100%	pos 56503 (F+)
WI1-2826I3				AC158783.5	99.46%	pos 185308 (F-)
WI1-2826I3				AC105174.7	99.46%	pos 405 (F-)
WI1-2864A10	AC158783.5	100%	pos 176159 (R+)
WI1-305G23	AC158783.5	100%	pos 149312 (R+)	AC158783.5	100%	pos 190078 (F-)
WI1-305G23				AC105174.7	100%	pos 5175 (F-)
WI1-425K14				AC105174.7	99.29%	pos 108907 (F-)
WI1-469N19	AC105174.7	100%	pos 53564 (R+)
WI1-570P23				AC158783.5	99.43%	pos 177084 (F-)
WI1-632C4	AC105174.7	100%	pos 90271 (R+)
WI1-637E18	AC158783.5	100%	pos 176197 (R-)
WI1-745N11	AC105174.7	100%	pos 152282 (R-)	AC105174.7	99.21%	pos 107995 (F+)
WI1-97C17	AC158783.5	100%	pos 175002 (R-)

NCBI

Join Evaluation Legend

Curator Links

Alignment for AC158783.5 and AC105174.7

Alignment Summary

Alignment 1 of 1