Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss322692	KWOK|OVLP-000621-28218		fwd/B	C/T	cccttggcctgaagcagtgagcacatgaga	tgtgtgacaacgcttcagagaaaaacagag	06/30/00	10/10/03	79	Genomic			99 %
ss509699	SC_JCM|AC025447.3_78045		rev/T	A/G	ctctgtttttctctgaagtgttgtcacaca	tctcatgtgctcactgcttcaggccagggt	07/12/00	10/10/03	92	Genomic			unknown
ss919493	KWOK|OVLP-000804-237225		fwd/B	C/T	cccttggcctgaagcagtgagcacatgaga	tgtgtgacaacgcttcagagaaaaacagag	09/01/00	10/10/03	86	Genomic			99 %
ss2392351	TSC-CSHL|TSC0432388		fwd/B	C/T	cccttggcctgaagcagtgagcacatgaga	tgtgtgacaacgcttcagagaaaaacagag	10/20/00	05/16/04	88	Genomic			95 %
ss3723547	SC_JCM|AC025447.4_77216		rev/T	A/G	ctctgtttttctctgaagtgttgtcacaca	tctcatgtgctcactgcttcaggccaaggg	09/25/01	10/10/03	100	Genomic			unknown
ss4441141	LEE|e1923535		fwd/B	C/T	cccttggcctgaagcagtgagcacatgaga	tgtgtgacaacgcttcagagaaaaacagag	04/26/02	10/10/03	106	cDNA			unknown
ss6479516	WI_SSAHASNP|NT_006679.11_793274		rev/T	A/G	ctctgtttttctctgaagcgttgtcacaca	tctcatgtgctcactgcttcaggccaaggg	02/12/03	10/10/03	111	Genomic			unknown
ss22306189	SSAHASNP|WGSA-200403-chr5.chr5.NT_006576.14_17512619		rev/T	A/G	ctctgtttttctctgaagcgttgtcacaca	tctcatgtgctcactgcttcaggccaaggg	03/21/04	03/21/04	121	Genomic			unknown
ss82727194	HGSV|Cor19240_SNV_20070510.chr5_35096270		rev/T	A/G	ctctgtttttctctgaagcgttgtcacaca	tctcatgtgctcactgcttcaggccaaggg	11/30/07	12/03/07	130	Genomic			unknown
ss108954094	1000GENOMES|CEU.trio.12.15.2008_1243093_chr5_35096270		rev/T	A/G	ctctgtttttctctgaagcgttgtcacaca	tctcatgtgctcactgcttcaggccaaggg	12/15/08	12/16/08	130	Genomic			unknown
ss111685198	1000GENOMES|NA19240_2008_12_16_1113709_chr5_35096270		rev/T	A/G	ctctgtttttctctgaagcgttgtcacaca	tctcatgtgctcactgcttcaggccaaggg	12/16/08	12/17/08	130	Genomic			unknown

Fasta sequence   (Legend)

 AAGTGTCCAC CACTGCCCAT CATTTGCAGA AAGACTTGGC CCTGCCTTTA GCAACTTCCC
 TATCTCCTTA GAGTAGACAA GAAAGAAACA GATTTGTGCA CATTTTACAA AGTGCCTTCC
 TCTATTTTTT TTTAAAGTTT TCATTTTGCA AGGAAAAATG TATTGATTAG AAAGTAACAT
 TTGCCTTATA GGGATtatat atatatatag atatagatat agatatgtat GAATGGAGAG
 ATGAGAAGAA GCCAGAAAGG GCACAACAAA ATGGTCTAAG GGCCAACCAG CAATGTTCAG
 TGAATGTTTA CGTATTGTTT AATTGAATCA ACACAGAGCT GTTGTGAATA GTGTGACTTA
 CTTTGCCTGA TAAGAAATTG AGGCTGGCTG TGATTTGGGG ATAAACCTGC CACCCTGTGA
 TTTGAGACTC TCCATACCAA AACTTATTGA TACATTTTTG AATGTCATTG GCTTACATGC
 CTAAACCTGA AGAGAACAAT GCATGCACAT TGGAACTTTG TACACAAACA GAAAAATATA
 AATGACTTTG AATTACCATC CCAAGCATTG CTAACGTAGA TGTGCCATTG ACGAAAGTCT
 CATGTGTTCT TGAGTGAACA AATTTCCTTT TCTTCCTTTT TGGCTCAAGC ACAATAATGC
 TGTCACTGAG ACAGTGACTG AGCACTCAAT GTCCAAGACT AAATCACATC ACCACGACTA
 AGTAGGCACT ATGTCCTGGG ATGAGTCTTT TAAACTCTGG CCATCAGGTT CCTTACTTGT
 TAAATAAGTA GGTTGGCCTA AAAGGTTTCT AAGACCTCTC ATGATCTAGG TAAAATCCAG
 GGTTTCAGGT CAGTGTCCCT GGTGCAGTGC AAGAAAGCCT TGCTGACACA CCCTTGGCCT
 GAAGCAGTGA GCACATGAGA
 Y
 TGTGTGACAA CGCTTCAGAG AAAAACAGAG ATCTGTTCCT CCAACTCAGA TTGATTTAAC
 ATCCTTGCTT CTCCTTTTCC TTCCTGGCTT TACATATTTG TAGGGTTTTT ACTCCTTCTC
 CAGAGCCTAC TATTTTCCTA AGAGTTAGTA GCAACCATA

GeneView

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss2392351	CEPH		184	AF					0.050	0.950
	HapMap-CEU	European	120	IG	0.017	0.250	0.733	1.000	0.142	0.858
	HapMap-HCB	Asian	90	IG	0.067	0.333	0.600	0.655	0.233	0.767
	HapMap-JPT	Asian	90	IG	0.089	0.444	0.467		0.311	0.689
	HapMap-YRI	Sub-Saharan African	120	IG	0.350	0.450	0.200	0.584	0.575	0.425

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN