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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs7927798          
refSNP ID: rs7927798
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/C
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_006755.1:c.98-1616G>T
NT_035113.6:g.694263G>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss12125186 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7927798 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss12125186WI_SSAHASNP|chr11.NT_035113.4_394388fwd/TA/Cctactcagtggctgggcacagtggctcacactgtaatcccagcactttgggaggccaacg07/04/0310/10/03116Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7927798|allelePos=1334|totalLen=4558|taxid=9606|snpclass=1|alleles='A/C'|mol=Genomic|build=116
 TGGGAGAACG CTGGTCAAAG GAAAATGTGC ATCCCACTGC CGTACCACCA CAAGGAGGCG
 CGCGGTCTAG TCATGAGCCA CAtgtgaacg ctgatcttat ggactgggtc attatcacca
 tacccagctg caacagagtc aagaagccaa ggggagctgg gcgcggcggc ccacgcctgt
 aatcccagca ctttgggagg ctgaagcggg tggatcacga ggtcaggaga tcaagaccat
 cctggctaac acggtgaaac cccgtctcta ctaaaaatac aaaaaactag ctgggtgtgg
 tggtcggcac ctgtagtccc agctactcgg gaggctgagg caggagaatg gcttgaatcc
 agtaggcgga gcttgcagtg agccgagatc gcgccactgc actccagcat gggtgacaga
 gtgagactcc atctcaaaaa aaaaaaaaaa aaaaaaaaaa aggccaaggg gaaaagcact
 caggacacac agcattgctc caaaaattat tacctgcaag cctagttgct gaagcggcct
 ctaacctgaa accagtttat ctaatagttg ctgaaccgca ctgctgcaac tttaagacta
 attttatcca ctgctatcac tcaccaatca TTCTTTTTAG GTTTCATAGA AAGACTaaat
 tagccaggtg tggtagtgca tgcctgtagc gtcagctact caagaggctg aggcaggagg
 atcgcttgag cccaggaggt tgagactgca gtgagccatg atcatgccac tacactccca
 cctgggccag agagcaagac cctatctctt aaaaaaataa aTTCAggccg ggtgcagtgg
 ctcatgcctg taatcccagc attttgggag gctgaggctg gtggatcgcc tgaggtcagg
 agtttgaaac cagcctggcc aaaatggtga aacccagtct ctactaaaaa tacaaaaatg
 agctgggtgt ggtgacacat gcccgtaatc ccagctactc aggaggctga ggcaagagaa
 tcgcttgaac ccaggaggtg gaggttgcaa tgagctgaga ttgcaccact gcactccagc
 ctgggtgaca gagtgagact ctgtttcata aataaataag caaacaaata aataaaTAtc
 gcattcagta gcttctgcag gtaacttgac aaaacctgac ctaagaatcc ttttagtcgg
 agtggacaac tttgacaatg tcccAAGTTT TTGTTCAAAT TGTACTGGTG GTCCCTTTTA
 TAAAGCTGAC ATTCTCTGCT TTAATCAACC CAGTCATAAA ATGCTACTCA GTggctgggc
 acagtggctc aca
 M
 ctgtaatccc agcactttgg gaggccaacg ggggtggatc acttgaggtc aggagttcga
 gaccagcctg gctaacacgg cgaaaccctg tccctactaa aaatacaaaa attagccagg
 cgtggtggtg catgcctata atcccagcta ctcgggaggc tgtggcagga aaatcacttg
 gacccgggag gtggaggttg cagtgagccg agattgtgcc actgcactac agcctgggca
 atggagcaag actctgttgc aaaaaaaaat aaaaaaGTTT TTTTCTTCAG AGTAACCAAC
 TAAACAGTTC AAAACGTCCA AACTTGTAGC CACTGAGTAG Cttttttttt ttttctgaca
 cagagtctca ctctgtcatc caggctggag tgcagtaaaa tgatctcgcc tcactgcaac
 ctcctcctcc agggttcaag tgattctcct acctcagcgt cctcagtagc tgggactaca
 ggctcacacc atgatgcctg gctaattttt gtacttgtat ttatttttta tttttttccg
 agacggagtc ttgcactgtt gcccaggctg gagtgcagtg gcgcaagctc agctcactgc
 aacctccaac tcccaggttc aagtaattct cctgcctcag ccccatgagt agctgggatt
 acaggcacga gccaccacgc caggctATGG TTTTTTGTGt tttttttttt gtatttgtat
 ttttattttt ttgagacgga gtctcgctct ttcacccacg ccggactgca gtggcgccat
 ctcggctcac tgcaagctct gcctcccggg ttcacgccat tctcctgcct cagcctcccg
 agtagctggg actacaggcg cccgccactg cggccggcta gttttttgta tttttagtag
 agatggggtt tcaccgtgtt agccaggatg gtctcgatct cctgacctca tgatccgccc
 gcctcagcct cccaaagtgc tggggttaca ggtgtgagcc accacacccg gccTTTTTtt
 tttgtatttt tagtagagac ggggttttgc catgttggcc gggctggtct cgaactcctg
 acctcaggtg atccacccac cttggcctcc caaattgctg ggattacaga cgtgagccac
 tgcgcccggc cTCTGAAGAA ACAACCTGAA CTGCAttcct ctgctctcat accagaataa
 tcaacagaga ggacttctgt gaccgatgtg tgggggtttc tccccacgca ccaaacaagc
 aattaattct tcagtggata ccagctgggc atcctccaat tcaattccaa ccctgtctac
 ctggagacag cctcagatcc cacaggttga aggcttagtc ccaaccaacc attctccatt
 cccacccgtc acaagtctgg gctccagaac ttctgatcca ctggcttcaa cttggggttg
 tcaacttgaa ttaacctttg tgttccatta atttgctgga gcagatcaca gaagtaaggg
 aaacactcac ttacatgtac tggcttatta tacaaaggac acagaggaag agatgcatag
 ggcaaggcat gtgagaaggg gcacggtgcc tccatgccca ccctgggtgc accacccttc
 aggaggctcc atgtgttcag gtatttggaa gctccctgaa ccctgtcctc ttgggccttt
 tatggagact ctactggaga gacatgactg aagtatggac agccctgttg aaatattatc
 atctaatgag tgaggaaacc cagcaacgcc tctgtgttca ccttcttacc gtcctccgtg
 caacattcct tcctccaggg tatgtgatgg gacccctttt gaaatgaggg tcttaggacc
 cacaattaga aaagcaagta gacggccggg cgcggtggct ggtgcctgta atcccagcac
 tttaggaggc cgaggcgggc agatcacgag gtcaggagat ccagaccatc ctggctaaca
 cggtgaaacc ccatctctac taaaaaaaaa aaaaaaatac aaaaaattag gtgggcgtgg
 tggcgggcgc ctgtagtccc agctactctg gaggctgagg cagaagaatg gcgtgaaccc
 ggaaggtgga gcttgcagtg agctgagatc acgccactga ctccagcctg ggcgacagag
 cgagactccg cctccaaaaa aaaagaaaag aaaagcaagt agagaattta tttatggaca
 gctccaaaac aggcaggaaa gattcctccc ttgaagagag aaaggaacag gtgaaaggag
 aggagaaggt cagtgatgga aattctgttt tccaaggcct gctcctgagg cctagagtgc
 cccaacatta taacagggct gtgggagtta tgagacagga actgtgTACA CACACATGCA
 TGCATGCACA CACATCAATT ACCATCAAAA TGAGGTTGAT GGTttattat tattattatt
 gttattttga gatggagtct cgctctgtcg cccaggctag agtgcagtgg cgtgatcccg
 gctcactgca acctccatct tccaggttca agcaattatc tcgcctcagc ctctcgagta
 gctgggatta caggcacctg ccaccatacc cggctaattt tttgtatttt tagtagagat
 ggggtttcac catgttggcc aggctggtct cgatctcttg acctcaggtg atccaccctc
 ctcggcctcc caaagtgctg tgattacagg cgtaagccac cAGCCAAAAa ttttttgtag
 agatgtggtc tcactgtgtt gcccaggctg gtcccgaact gctaggccca aacaatcctt
 ctgcctcagc ctcccaaagt gctggggatt atacgcatga gccaccgagg ctggccccaa
 ctttctcttg ttctttggac agatcgaaga ccacccagtc tgcttgaact gcaatttttt
 cttcccaaat aaaacgttga atttagagat tcgtctctac attttatttt gacttcaaca
 CAGATACCAC ATGGTTATCT TCAGCAAGGA TTGttagctg ggagtggtgg cgcacatctg
 tagtcccagc tacttgggag gctgaggtgg ggggatcacc tcagcccagg aggtcaaggc
 tgcagttagc cgtgttgcac cacgtgattg caccactata cagcctgggt gacagagcaa
 gaccctgtct caaaaaaaac cccaaaaaca aaaaCCCAAG GATT

  GeneView back to top
GeneView via analysis of contig annotation: TALDO1 transaldolase 1
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_035113->NM_006755
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_035113->NM_006755->NP_006746694263forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs7927798 maps exactly once on NCBI human chromosome 11
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
11NW_001838016.1397040571186minusGalt_assembly_8HuRefHuRefview1333
11NT_035113.6694263744263minusGref_assemblyreferencereferenceview1333
11NW_924962.1401898822142minusGalt_assembly_1CeleraCeleraview1333

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_035113
dbSNP Blast Analysis
GenBank HTGS Finished:
AP006621.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .