BLAST Search Results
BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= HHVONE045
(488 letters)
Database: nr
1,508,275 sequences; 485,782,529 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9629423|ref|NP_044644.1| subunit of replicative DNA polymeras... 969 0.0
gi|9629312|ref|NP_044512.1| subunit of replicative DNA polymeras... 650 0.0
gi|7546536|pdb|1DML|A Chain A, Crystal Structure Of Herpes Simpl... 622 e-177
gi|30984470|ref|NP_851902.1| DNA polymerase subunit [Cercopithec... 366 e-100
gi|28804678|dbj|BAC58082.1| subunit of replicative DNA polymeras... 364 2e-99
gi|22000958|gb|AAM82187.1| DNA polymerase processivity factor [B... 347 4e-94
gi|221781|dbj|BAA00746.1| UL42 [Human herpesvirus 2] 328 2e-88
gi|10834913|ref|NP_066874.1| UL42 protein [Gallid herpesvirus 3]... 121 3e-26
gi|3510311|dbj|BAA32578.1| UL42 protein [Marek's disease virus s... 120 4e-26
gi|9629742|ref|NP_045235.1| 18 [Equine herpesvirus 4] >gnl|BL_OR... 120 4e-26
gi|12084871|ref|NP_073336.1| UL42 DNA polymerase processivity su... 119 9e-26
gi|9626755|ref|NP_041027.1| DNA polymerase processivity factor [... 119 2e-25
gi|549422|sp|P36702|VPAP_PRVKA DNA POLYMERASE PROCESSIVITY FACTO... 117 4e-25
gi|9635076|ref|NP_057803.1| UL42 [Gallid herpesvirus 2] >gnl|BL_... 117 6e-25
gi|9629832|ref|NP_045316.1| processivity factor for DNA polymera... 103 9e-21
gi|9625891|ref|NP_040139.1| DNA polymerase-associated protein [H... 97 5e-19
gi|13242408|ref|NP_077431.1| DNA polymerase-associated protein [... 86 1e-15
gi|9629330|ref|NP_044530.1| RS1 [Human herpesvirus 2] >gnl|BL_OR... 51 4e-05
gi|21356133|ref|NP_650906.1| CG4000-PA [Drosophila melanogaster]... 51 4e-05
>gi|9629423|ref|NP_044644.1| subunit of replicative DNA polymerase
[Human herpesvirus 1]
gi|136905|sp|P10226|VPAP_HSV11 DNA polymerase processivity factor
(Polymerase accessory protein) (PAP) (DNA-binding
protein UL42)
gi|73837|pir||WMBE42 DNA-binding protein - human herpesvirus 1
(strain 17)
gi|59542|emb|CAA32305.1| subunit of replicative DNA polymerase
[Human herpesvirus 1]
gi|330236|gb|AAA45824.1| UL42 [human herpesvirus 1]
Length = 488
Score = 969 bits (2504), Expect = 0.0
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60
MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV
Sbjct: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60
Query: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120
MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL
Sbjct: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120
Query: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180
RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL
Sbjct: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180
Query: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240
TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS
Sbjct: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240
Query: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300
NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC
Sbjct: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300
Query: 301 VTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHG 360
VTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHG
Sbjct: 301 VTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHG 360
Query: 361 DPEDLDGAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPTAP 420
DPEDLDGAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPTAP
Sbjct: 361 DPEDLDGAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPTAP 420
Query: 421 PPADPVPLDTEDDSDAADGTAARPAAPDARSGSRYACYFRDLPTGEASPGAFSAFRGGPQ 480
PPADPVPLDTEDDSDAADGTAARPAAPDARSGSRYACYFRDLPTGEASPGAFSAFRGGPQ
Sbjct: 421 PPADPVPLDTEDDSDAADGTAARPAAPDARSGSRYACYFRDLPTGEASPGAFSAFRGGPQ 480
Query: 481 TPYGFGFP 488
TPYGFGFP
Sbjct: 481 TPYGFGFP 488
>gi|9629312|ref|NP_044512.1| subunit of replicative DNA polymerase
[Human herpesvirus 2]
gi|1869865|emb|CAB06728.1| subunit of replicative DNA polymerase
[Human herpesvirus 2]
Length = 470
Score = 650 bits (1678), Expect = 0.0
Identities = 351/492 (71%), Positives = 381/492 (77%), Gaps = 26/492 (5%)
Query: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60
M PGG A A EDA + + E+ PCQ+VLQGAELNGILQAFAPLRTSLLDSLLV
Sbjct: 1 MAHLPGGAAAAPLSEDAIPSPRERTEDWPPCQIVLQGAELNGILQAFAPLRTSLLDSLLV 60
Query: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120
+GDRGIL+HN IFGEQVFLPL+HSQFSRYRW GPTAAFLSLVDQKRSLLSVFRANQYPDL
Sbjct: 61 VGDRGILVHNAIFGEQVFLPLDHSQFSRYRWGGPTAAFLSLVDQKRSLLSVFRANQYPDL 120
Query: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180
RRVEL +TGQAPFRTLVQRIWTT SDGEAVELASETLMKRELTSF VL+PQG PDVQLRL
Sbjct: 121 RRVELTVTGQAPFRTLVQRIWTTASDGEAVELASETLMKRELTSFAVLLPQGDPDVQLRL 180
Query: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240
T+PQLTKV+NA G ++A PTTFELG NGKFSVF TCVTFAAREEG SSSTS QVQIL+
Sbjct: 181 TKPQLTKVVNAVGDETAKPTTFELGPNGKFSVFNARTCVTFAAREEGASSSTSAQVQILT 240
Query: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300
+AL KAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLT VPS+C
Sbjct: 241 SALKKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTADVPSVC 300
Query: 301 VTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSAS--DAVS 358
VTATGPNAVSAVFLLKPQ++CL+WLG S GS S GS AS+ S + PTDSQDS+S DA
Sbjct: 301 VTATGPNAVSAVFLLKPQRVCLNWLGRSPGS-STGSLASQDSRAGPTDSQDSSSEPDAGD 359
Query: 359 HGDPED--LDGAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGS 416
G PE+ L+G AR A P P P TKR G E AD A K+PKTG
Sbjct: 360 RGAPEEEGLEGQARVPP-----AFPEP-------PGTKRRHPGAEVVPADDATKRPKTGV 407
Query: 417 PTAPPPADPVPLDTEDDSDAADGTAARPAAPDARSGSRYACYFRDLPTGEASPGAFSAFR 476
P AP A+ PL +AA+G G RYACYFRDL TG+ASP SAFR
Sbjct: 408 PAAPTRAESPPLSARYGPEAAEG---------GGDGGRYACYFRDLQTGDASPSPLSAFR 458
Query: 477 GGPQTPYGFGFP 488
G + PYGFG P
Sbjct: 459 GPQRPPYGFGLP 470
>gi|7546536|pdb|1DML|A Chain A, Crystal Structure Of Herpes Simplex
Ul42 Bound To The C- Terminus Of Hsv Pol
gi|7546538|pdb|1DML|C Chain C, Crystal Structure Of Herpes Simplex
Ul42 Bound To The C- Terminus Of Hsv Pol
gi|7546540|pdb|1DML|E Chain E, Crystal Structure Of Herpes Simplex
Ul42 Bound To The C- Terminus Of Hsv Pol
gi|7546542|pdb|1DML|G Chain G, Crystal Structure Of Herpes Simplex
Ul42 Bound To The C- Terminus Of Hsv Pol
Length = 319
Score = 622 bits (1603), Expect = e-177
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60
MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV
Sbjct: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60
Query: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120
MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL
Sbjct: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120
Query: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180
RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL
Sbjct: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180
Query: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240
TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS
Sbjct: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240
Query: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300
NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC
Sbjct: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300
Query: 301 VTATGPNAVSAVFLLKPQK 319
VTATGPNAVSAVFLLKPQK
Sbjct: 301 VTATGPNAVSAVFLLKPQK 319
>gi|30984470|ref|NP_851902.1| DNA polymerase subunit [Cercopithecine
herpesvirus 1]
gi|30844284|gb|AAP41460.1| DNA polymerase subunit [Cercopithecine
herpesvirus 1]
Length = 475
Score = 366 bits (939), Expect = e-100
Identities = 236/497 (47%), Positives = 290/497 (57%), Gaps = 52/497 (10%)
Query: 10 PASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIH 69
P S + SD+ C++ L+G EL +L+AFAPLRT LLDS+LV+G+RG+LI
Sbjct: 13 PGSGDDFDSDSDDACARSTVNCRLALRGPELTEMLRAFAPLRTCLLDSMLVVGERGVLIQ 72
Query: 70 NTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITG 129
TIFGEQVFLPL FS Y WRGP AAF+SLVDQKRSLL+ RA QYP L RV+L I+G
Sbjct: 73 CTIFGEQVFLPLGRELFSLYEWRGPPAAFMSLVDQKRSLLNALRAGQYPGLSRVDLTISG 132
Query: 130 QAPFRTLVQRIWTTTSDGE--AVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTK 187
+AP RTL QR+W + E A EL + TLMKREL SFVVL+PQ DVQLRLT+PQL K
Sbjct: 133 EAPQRTLRQRVWVEDPEAEAGATELRAATLMKRELASFVVLLPQDRADVQLRLTKPQLAK 192
Query: 188 VLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTS-TQVQILSNALTKA 246
+L A A PTT ELG +G+F+V CVTF AREEG + ST+ TQ+QILS AL K+
Sbjct: 193 IL----ALPAGPTTLELGPSGRFAVSGGGVCVTFVAREEGAAPSTADTQMQILSRALKKS 248
Query: 247 GQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGP 306
QAA AKT+YG N RTFS+ ++D + RAVL+RLQVGG TLKFF + PS+CVTATGP
Sbjct: 249 DQAALAAKTIYGANLQRTFSLALEDGNWRAVLKRLQVGGATLKFFFASSTPSMCVTATGP 308
Query: 307 NAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHGDPEDLD 366
N+VSAVFLL PQ I S A+ + P + + + E+
Sbjct: 309 NSVSAVFLLDPQNI--------------ASVPEEAAAAPPPPGAEEGGERPGEKEKEERP 354
Query: 367 GAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPT-------- 418
A E A P+S P KR + DA A + +K P
Sbjct: 355 EGAVGAEPDA------PAS-----PGAKRALA---DAAARASARKKSRLYPVYVVDADPR 400
Query: 419 ---APPPADPVPLDTEDDSDAADGTAAR--PAAPDARSGSRYACYFRDLP--TGEASPGA 471
+PPP+ P+D E S AADG AA PA + R+G YA YF + P G P A
Sbjct: 401 VSPSPPPSPGGPVDPEPGS-AADGAAAESFPARGETRNG-LYARYFTNPPIIRGPLFPAA 458
Query: 472 FSAFRGGPQTPYGFGFP 488
S G GFG P
Sbjct: 459 ASDQDPGAIPGSGFGIP 475
>gi|28804678|dbj|BAC58082.1| subunit of replicative DNA polymerase
[Cercopithecine herpesvirus 1]
Length = 475
Score = 364 bits (935), Expect = 2e-99
Identities = 235/497 (47%), Positives = 289/497 (57%), Gaps = 52/497 (10%)
Query: 10 PASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIH 69
P S + SD+ C++ L+G EL +L+AFAPLRT LLDS+LV+G+RG+LI
Sbjct: 13 PGSGDDFDSDSDDACARSTVNCRLALRGPELTEMLRAFAPLRTCLLDSMLVVGERGVLIQ 72
Query: 70 NTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITG 129
TIFGEQVFLPL FS Y WRGP AAF+SLVDQKRSLL+ RA QYP L RV+L I+G
Sbjct: 73 CTIFGEQVFLPLGRELFSLYEWRGPPAAFMSLVDQKRSLLNALRAGQYPGLSRVDLTISG 132
Query: 130 QAPFRTLVQRIWTTTSDGE--AVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTK 187
+AP RTL QR+W + E A EL + TLMKREL SFVVL+PQ DVQLRLT+PQL K
Sbjct: 133 EAPQRTLRQRVWVEDPEAEAGATELRAATLMKRELASFVVLLPQDRADVQLRLTKPQLAK 192
Query: 188 VLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTS-TQVQILSNALTKA 246
+L A A PTT ELG +G+F+ CVTF AREEG + ST+ TQ+QILS AL K+
Sbjct: 193 IL----ALPAGPTTLELGPSGRFAASGGGVCVTFVAREEGAAPSTADTQMQILSRALKKS 248
Query: 247 GQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGP 306
QAA AKT+YG N RTFS+ ++D + RAVL+RLQVGG TLKFF + PS+CVTATGP
Sbjct: 249 DQAALAAKTIYGANLQRTFSLALEDGNWRAVLKRLQVGGATLKFFFASSTPSMCVTATGP 308
Query: 307 NAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHGDPEDLD 366
N+VSAVFLL PQ I S A+ + P + + + E+
Sbjct: 309 NSVSAVFLLDPQNI--------------ASVPEEAAAAPPPPGAEEGGERPGEKEKEERP 354
Query: 367 GAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPT-------- 418
A E A P+S P KR + DA A + +K P
Sbjct: 355 EGAVGAEPDA------PAS-----PGAKRALA---DAAARASTRKKSRLYPVYVVDADPR 400
Query: 419 ---APPPADPVPLDTEDDSDAADGTAAR--PAAPDARSGSRYACYFRDLP--TGEASPGA 471
+PPP+ P+D E S AADG AA PA + R+G YA YF + P G P A
Sbjct: 401 VWPSPPPSPGGPVDPEPGS-AADGAAAESFPARGETRNG-LYARYFTNPPIIRGPLFPAA 458
Query: 472 FSAFRGGPQTPYGFGFP 488
S G GFG P
Sbjct: 459 ASDQDPGAIPGSGFGIP 475
>gi|22000958|gb|AAM82187.1| DNA polymerase processivity factor
[Bovine herpesvirus 2]
Length = 449
Score = 347 bits (889), Expect = 4e-94
Identities = 206/441 (46%), Positives = 264/441 (59%), Gaps = 38/441 (8%)
Query: 31 CQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYR 90
C V+ G EL +LQAFAPLRTSLLDSLL+ G+RG++IH+ +FGEQV++ L+ S FS Y+
Sbjct: 16 CHAVIHGQELALMLQAFAPLRTSLLDSLLLFGERGLIIHSAVFGEQVYMRLDLSMFSTYQ 75
Query: 91 WRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAV 150
W GP AAF+S+VDQK+SLL VFRANQ DLRRVE ITG +PFRTL +R+WT ++G
Sbjct: 76 WEGPPAAFMSIVDQKQSLLGVFRANQGVDLRRVEFEITGDSPFRTLTRRVWTNDAEGGPD 135
Query: 151 ELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKF 210
E LMKRE+TSF V+VPQG PDV +RLTR QL KV+ A + TFEL N KF
Sbjct: 136 EPPGLRLMKREVTSFSVMVPQGKPDVLIRLTRSQLAKVV-AIATGESPRVTFELSANKKF 194
Query: 211 SVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVVD 270
SVF+ S CVTFA RE Q Q+LS AL ++GQ+AA AKTVYG++THR FS +D
Sbjct: 195 SVFSQSACVTFAVRESSAPDGMVDQAQVLSRALGRSGQSAAAAKTVYGDHTHRAFSATLD 254
Query: 271 DCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGPNAVSAVFLLKPQKICLDWLGHSQG 330
+MR+VLRRLQVGG LKFFL PS+CVTATGP+ VSA+F+LKP +W G +
Sbjct: 255 TENMRSVLRRLQVGGAALKFFLGDETPSVCVTATGPSLVSAIFMLKPLHFKYEWPG-PET 313
Query: 331 SPSAGSSASRA-------SGSEPTDSQDSASDAVSHGDPEDLDGAARAGEAGALHACPMP 383
+P G S +R +P+++ +A++ + D R EA P
Sbjct: 314 APDVGGSKARTRPRSKPKQKLKPSNTTAVPEEAIARECFANSDTRGREDEA--------P 365
Query: 384 SSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPTAPPPADPVPLDTEDDSDAADGTAAR 443
S TR D TA+ K +P P PA L E+ A GT +
Sbjct: 366 SLPTR-------------DNELRTAISKE---APLEPSPAKKPRLSAEN----AAGTVSG 405
Query: 444 PAAP-DARSGSRYACYFRDLP 463
P + S + YF + P
Sbjct: 406 GEVPRPLTTPSMFTAYFTNPP 426
>gi|221781|dbj|BAA00746.1| UL42 [Human herpesvirus 2]
Length = 204
Score = 328 bits (840), Expect = 2e-88
Identities = 166/204 (81%), Positives = 179/204 (87%)
Query: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60
M PGG A A EDA + + E+ PCQ+VLQGAELNGILQAFAPLRTSLLDSLLV
Sbjct: 1 MAHLPGGAAAAPLSEDAIPSPRERTEDWPPCQIVLQGAELNGILQAFAPLRTSLLDSLLV 60
Query: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120
+GDRGIL+HN IFGEQVFLPL+HSQFSRYRW GPTAAFLSLVDQKRSLLSVFRANQYPDL
Sbjct: 61 VGDRGILVHNAIFGEQVFLPLDHSQFSRYRWGGPTAAFLSLVDQKRSLLSVFRANQYPDL 120
Query: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180
RRVEL +TGQAPFRTLVQRIWTT SDGEAVELASETLMKRELTSF VL+PQG PDVQLRL
Sbjct: 121 RRVELTVTGQAPFRTLVQRIWTTASDGEAVELASETLMKRELTSFAVLLPQGDPDVQLRL 180
Query: 181 TRPQLTKVLNATGADSATPTTFEL 204
T+PQLTKV+NA G ++A PTTFEL
Sbjct: 181 TKPQLTKVVNAVGDETAKPTTFEL 204
>gi|10834913|ref|NP_066874.1| UL42 protein [Gallid herpesvirus 3]
gi|5689314|dbj|BAA82938.1| UL42 product homolog [Marek's disease
virus serotype 2 MDV2]
gi|10800007|dbj|BAB16552.1| UL42 protein [Gallid herpesvirus 3]
Length = 369
Score = 121 bits (303), Expect = 3e-26
Identities = 93/334 (27%), Positives = 151/334 (44%), Gaps = 19/334 (5%)
Query: 14 VEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIF 73
++DA S P +VVL G + + A + S+ + L++ D G++I TI
Sbjct: 12 IDDAGATSNDSPNSW---KVVLAGEKFRTVSAAVRAIVDSVKNPLIIFSDDGLMIQGTIC 68
Query: 74 GEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPF 133
G+Q F+P+E + FS + WRG A FL+L D +R+LL F+ ++ + V G+ P
Sbjct: 69 GQQTFVPIECAAFSEFEWRGSAAIFLALTDSRRTLLDAFKCDKKKAI-EVSFTFRGEPPS 127
Query: 134 RTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATG 193
R L Q + T +G S ++K EL VL PQ PDV + + QL K+L
Sbjct: 128 RHLTQTVTYVTDNGS----FSSAIIKYELWCASVLFPQKIPDVTFSVNKQQLNKILAIAA 183
Query: 194 ADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKA---GQAA 250
TF L G F T ++F ++ +S+AL A +AA
Sbjct: 184 KRRHEQLTFALKAEGGFYAGTVCDVISFDVDGSAMTQYPYNATTAVSSALVLACGKKRAA 243
Query: 251 ANAK-TVYGENTHRTFSVVVDD-CSMRAVLRRLQVG--GGTLKFFLTTPVPSLCVTATGP 306
NA T YG + F + ++D + R V+++++ G G L F+ P LCV
Sbjct: 244 RNAPVTAYGSG--KPFCLALEDTTAFRNVVQKIKTGSAGADLGFYTACNPPMLCVRPQAF 301
Query: 307 NAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASR 340
+++A C+ + S + G+ S+
Sbjct: 302 GSLTAFLFCNSD--CMSIYELEEASVAVGAVTSK 333
>gi|3510311|dbj|BAA32578.1| UL42 protein [Marek's disease virus
serotype 2 MDV2]
Length = 369
Score = 120 bits (302), Expect = 4e-26
Identities = 93/334 (27%), Positives = 151/334 (44%), Gaps = 19/334 (5%)
Query: 14 VEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIF 73
++DA S P +VVL G + + A + S+ + L++ D G++I TI
Sbjct: 12 IDDAGATSNDSPNSW---KVVLAGEKFRTVSAAVRAIVDSVKNPLIIFSDDGLMIQGTIC 68
Query: 74 GEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPF 133
G+Q F+P+E + FS + WRG A FL+L D +R+LL F+ ++ + V G+ P
Sbjct: 69 GQQTFVPIECAAFSEFEWRGSAAIFLALTDSRRTLLDAFKCDKKKAI-EVSFTFRGEPPS 127
Query: 134 RTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATG 193
R L Q + T +G S ++K EL VL PQ PDV + + QL K+L
Sbjct: 128 RHLTQTVTYVTDNGS----FSSAIIKYELWCASVLFPQKIPDVTFSVNKQQLNKILAIAA 183
Query: 194 ADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKA---GQAA 250
TF L G F T ++F ++ +S+AL A +AA
Sbjct: 184 KRRHEQLTFALKAEGGFYAGTVCDVISFDVDGSAMTQYPYNATTAVSSALVLACGKKRAA 243
Query: 251 ANAK-TVYGENTHRTFSVVVDD-CSMRAVLRRLQVG--GGTLKFFLTTPVPSLCVTATGP 306
NA T YG + F + ++D + R V+++++ G G L F+ P LCV
Sbjct: 244 RNAPVTAYGSG--KPFCLALEDTTAFRNVVQKIKTGSAGADLGFYTACNPPMLCVRPHAF 301
Query: 307 NAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASR 340
+++A C+ + S + G+ S+
Sbjct: 302 GSLTAFLFCNSD--CMSIYELEEASVAVGAVTSK 333
>gi|9629742|ref|NP_045235.1| 18 [Equine herpesvirus 4]
gi|11278227|pir||T42561 DNA polymerase processivity factor - equine
herpesvirus 4 (strain NS80567)
gi|2605960|gb|AAC59532.1| 18 [Equine herpesvirus 4]
Length = 406
Score = 120 bits (302), Expect = 4e-26
Identities = 95/366 (25%), Positives = 174/366 (46%), Gaps = 30/366 (8%)
Query: 6 GGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRG 65
GG P + + +A A + P E V + L L+ P+ SL ++ L+ + G
Sbjct: 10 GGSHPNNFLLNALPA-IDNPVERQRAMAVFERESLRDALEMLTPIAPSLKNAFLIFNEDG 68
Query: 66 ILIHNTIFGEQVFLPLEHSQFSRYRWR-GPTAAFLSLVDQKRSLLSVFRANQYPDLRRVE 124
+LIH ++ GEQV++P++ + + Y W+ P A FL+ VD +R LL FR P + +V
Sbjct: 69 LLIHTSVGGEQVYIPIQTNNMASYSWQEAPPAVFLANVDGRRGLLDAFRTKAQPTVSKVV 128
Query: 125 LAITGQAPFRTLVQRIWTTTSDGE-----------AVELASETLMKRELTSFVVLVPQGT 173
I +P R L Q +++T+ E + S L+K E ++ +++P
Sbjct: 129 FEIENASPTRILTQTVFSTSDQMEDDMDMGSDPENTTQAISTKLVKHEFNNYSLMLPTRK 188
Query: 174 PDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFA-----AREEGV 228
PDV + L++ QL K+L + P TF+ + V + V F+ A + G+
Sbjct: 189 PDVSMSLSKQQLNKILGVC-KQANEPITFQCLFDDTLQVRSGDRQVVFSVDYQNATKCGM 247
Query: 229 SSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVV-DDCSMRAVLRRLQV--GG 285
SS+S +L K + A + + G + + F++++ +D + + ++++L++ G
Sbjct: 248 ESSSS----LLEKMPLKTKKTA--PEPIRGISGRKLFTLLLEEDTNFKQLIQKLKLKNAG 301
Query: 286 GTLKFFL-TTPVPSLCVTATGPNAVSAVFLLK-PQKICLDWLGHSQGSPSAGSSASRASG 343
L FFL +P + ++ P +V F+ PQ+ C HS SP++ +
Sbjct: 302 AVLNFFLEPESIPMIGLSTKQPFSVMMFFMCSYPQQPCKVGFSHSAFSPNSLGVGLKRRA 361
Query: 344 SEPTDS 349
S+ DS
Sbjct: 362 SDEDDS 367
>gi|12084871|ref|NP_073336.1| UL42 DNA polymerase processivity
subunit [Meleagrid herpesvirus 1]
gi|11095875|gb|AAG30082.1|AF282130_45 UL42 DNA polymerase
processivity factor [Meleagrid herpesvirus 1]
gi|12025154|gb|AAG45780.1|AF291866_47 UL42 DNA polymerase
processivity subunit [Meleagrid herpesvirus 1]
Length = 369
Score = 119 bits (299), Expect = 9e-26
Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 18/279 (6%)
Query: 32 QVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRW 91
+++L G + I + + + + + LL G G+++ T+ G+++F+P++ FS Y W
Sbjct: 27 RIILAGEKFMTISASLKSIVSCVKNPLLTFGADGLIVQGTVCGQRIFVPIDRDSFSEYEW 86
Query: 92 RGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAIT--GQAPFRTLVQRIWTTTSDGEA 149
GPTA FL+L D +R+LL F+ + R ++++ T G+ P R L+Q + T +DG +
Sbjct: 87 HGPTAMFLALTDSRRTLLDAFKCEK---RRAIDVSFTFAGEPPCRHLIQAV-TYMTDGGS 142
Query: 150 VELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGK 209
V S T++K EL + + PQ TPDV L + QL K+L F L G
Sbjct: 143 V---SNTIIKYELWNASTIFPQKTPDVTFSLNKQQLNKILAVASKLQHEELVFSLKPEGG 199
Query: 210 FSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKA-GQAAANAKTV---YGENTHRTF 265
F V T T ++F ++ + AL A + AN T+ YG + F
Sbjct: 200 FYVGTVCTVISFEVDGTAMTQYPYNPPTSATLALVVACRKKKANKNTILTAYGSG--KPF 257
Query: 266 SVVVDDCS-MRAVLRRLQVG--GGTLKFFLTTPVPSLCV 301
V ++D S R ++ +++ G G L F+ T P LC+
Sbjct: 258 CVALEDTSAFRNIVNKIKAGTSGVDLGFYTTCDPPMLCI 296
>gi|9626755|ref|NP_041027.1| DNA polymerase processivity factor
[Equine herpesvirus 1]
gi|136906|sp|P28958|VPAP_HSVEB DNA POLYMERASE PROCESSIVITY FACTOR
(POLYMERASE ACCESSORY PROTEIN) (PAP) (DNA-BINDING GENE
18 PROTEIN)
gi|73838|pir||WZBEB2 DNA polymerase processivity factor - equine
herpesvirus 1 (strain Ab4p)
gi|330810|gb|AAB02453.1| DNA polymerase processivity factor
Length = 405
Score = 119 bits (297), Expect = 2e-25
Identities = 99/373 (26%), Positives = 175/373 (46%), Gaps = 35/373 (9%)
Query: 5 PGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDR 64
PGG P + + + + P E V + L + P+ SL ++ L+ +
Sbjct: 9 PGGSHPNNFLFNTLPV-IDNPVERQRAMAVFERESLRDAFEMLTPIAPSLKNAFLIFNED 67
Query: 65 GILIHNTIFGEQVFLPLEHSQFSRYRW-RGPTAAFLSLVDQKRSLLSVFRANQYPDLRRV 123
G+LIH ++ GEQV++P++ + Y W + P A FL+ VD +R LL F+A ++ +V
Sbjct: 68 GLLIHTSVGGEQVYIPIQTNNMESYSWKKAPPAVFLANVDGRRGLLDAFKAKTQTNVSKV 127
Query: 124 ELAITGQAPFRTLVQRIWTTT----------SDGE-AVELASETLMKRELTSFVVLVPQG 172
I +P R L Q +++ SD E A + S L+K E ++ +++P
Sbjct: 128 VFEIENYSPSRILTQTVFSARDQTEEDTEMGSDAEGATQTVSSRLVKHEFNNYALMLPTR 187
Query: 173 TPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFA-----AREEG 227
PDV + L++ QL K+L + P TF+ + V + V F+ A G
Sbjct: 188 QPDVSMSLSKAQLNKILGVC-KQAGDPITFQCLFDDTLQVRSGDRQVVFSVDYQHADNCG 246
Query: 228 VSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVVD-DCSMRAVLRRLQV--G 284
V SS+S +L K ++A + + G + R F++V+D D + + ++++L++
Sbjct: 247 VESSSS----LLEKMPMKTKKSA--PEPIRGISGRRLFTLVLDEDTNFKQLIQKLKLKNA 300
Query: 285 GGTLKFFL-TTPVPSLCVTATGPNAVSAVFLLK-PQKICLDWLGHSQGSPSAGSSASRAS 342
G L FFL +P + ++ P +V F+ P + C SP+A SS +
Sbjct: 301 GAVLNFFLDPDSIPMIGLSTKQPFSVMMFFMCSYPTQPC-----QVGFSPAAFSSTPMGA 355
Query: 343 GSEPTDSQDSASD 355
G + S++ SD
Sbjct: 356 GVKRRASEEEESD 368
>gi|549422|sp|P36702|VPAP_PRVKA DNA POLYMERASE PROCESSIVITY FACTOR
(POLYMERASE ACCESSORY PROTEIN) (PAP) (UL42 HOMOLOG)
gi|334091|gb|AAA74384.1| homologue to HSV-1 UL42 gene
Length = 384
Score = 117 bits (294), Expect = 4e-25
Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 26/303 (8%)
Query: 26 EEGAPCQ----VVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPL 81
E+G P Q +VL L A APL L + LV + G+L+H ++ GEQV++ L
Sbjct: 33 EDGEPLQRTGMLVLSDEHLEHARAAIAPLAAHLAHAFLVFSEAGLLVHASVRGEQVYVTL 92
Query: 82 EHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIW 141
QFS + W GP A FL VD +L + ++ + V + G P R L +R +
Sbjct: 93 APDQFSTFVWSGPQAVFLGNVDGSGGVLDALKVDRRRTVFNVTFEVYGAFPARLLTRRAY 152
Query: 142 TTTSDGEAVELASET---LMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSAT 198
+ A S + + K E + +++P PDV L L+RPQ+ K L A +A
Sbjct: 153 FADAGVLATGPGSPSVACVYKHEFNDYCIMLPSRAPDVSLTLSRPQVAK-LAAVAKGAAA 211
Query: 199 PTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYG 258
TTF L FSV +++ VTF AR+ ++ L +A Q V
Sbjct: 212 GTTFALARGLDFSVSSSAGVVTFPARDRDGTA-----------VLERASQRRQGVDAV-- 258
Query: 259 ENTHRTFSVVVDDC-SMRAVLRRLQVGGGTLKF-FLTTP--VPSLCVTATGPNAVSAVFL 314
F++ ++ + +L+RL+ G L F F TTP P VT GP + F
Sbjct: 259 -GATEPFAMTLETAHGLLTLLQRLRAGNAELTFNFFTTPRQAPLFSVTTCGPVRATTFFF 317
Query: 315 LKP 317
P
Sbjct: 318 CAP 320
>gi|9635076|ref|NP_057803.1| UL42 [Gallid herpesvirus 2]
gi|7673153|gb|AAF66777.1|AF147806_41 UL42 [Gallid herpesvirus 2]
gi|10180747|gb|AAG14235.1|AF243438_50 UL42 DNA polymerase
processivity subunit-like protein [Gallid herpesvirus 2]
Length = 369
Score = 117 bits (292), Expect = 6e-25
Identities = 85/279 (30%), Positives = 139/279 (49%), Gaps = 18/279 (6%)
Query: 32 QVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRW 91
++VL G + A + + + L+ D G++I T+ G+++F+P++ + FS Y W
Sbjct: 27 KIVLAGEKFMTASAALKTIVGCVKNPLITFSDDGLMIQGTVCGQRMFVPIDCTSFSEYEW 86
Query: 92 RGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAIT--GQAPFRTLVQRIWTTTSDGEA 149
RGPTA FL+L D +R+LL F+ ++ + VE+ T G+ P R L Q + T +DG +
Sbjct: 87 RGPTAIFLALTDSRRTLLDAFKCDK---KKVVEVCFTFRGEPPCRHLTQTV-TYANDGCS 142
Query: 150 VELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGK 209
S T++K EL S ++ PQ TPD L + QL+K+L F L G
Sbjct: 143 F---SSTIVKYELWSASIICPQKTPDATFSLNKQQLSKILTVAAKVQHEELIFALKAEGG 199
Query: 210 FSVFTTSTCVTF----AAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTF 265
F T ++F +A + ++TS L A K + A T YG + F
Sbjct: 200 FYAGTICDVISFDIDGSAMVQYPYNATSHASSALIVACGKKKTNKSIAVTAYGSG--KPF 257
Query: 266 SVVVDDC-SMRAVLRRLQVG--GGTLKFFLTTPVPSLCV 301
+ ++D + R V+++++ G G L F+ T P LCV
Sbjct: 258 CLALEDTNAFRNVVQKIKTGAAGADLGFYTTCDPPMLCV 296
>gi|9629832|ref|NP_045316.1| processivity factor for DNA polymerase
[Bovine herpesvirus 1]
gi|995640|emb|CAA90926.1| UL42 [Bovine herpesvirus 1]
gi|2653305|emb|CAA06091.1| processivity factor for DNA polymerase
[Bovine herpesvirus type 1.1]
Length = 408
Score = 103 bits (256), Expect = 9e-21
Identities = 88/315 (27%), Positives = 141/315 (43%), Gaps = 24/315 (7%)
Query: 18 SDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQV 77
SD G P A L G +L + +P SL ++ LV G+L+H+ ++ EQV
Sbjct: 22 SDGGNGNPIASAS----LIGRQLADVSALLSPFGASLRNAFLVFSREGMLVHSGLYDEQV 77
Query: 78 FLPLEHSQFSRYRWR----GPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPF 133
++ + +F+ ++W A FL+ VD +R LL FRA++ ++ V ITG+ P
Sbjct: 78 YVAVPAEKFTSFQWAPARDDARAVFLANVDSRRGLLDAFRADKTRTVQNVAFLITGEPPA 137
Query: 134 RTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATG 193
L Q T EA L +L+K EL + +++P D+ + L+RPQL+K L A
Sbjct: 138 SVLTQ----VTYFREADALLQASLVKHELGEYSIMLPTRGADLAVSLSRPQLSK-LQAVA 192
Query: 194 ADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSN-------ALTKA 246
D F S + S +FAAR EG S Q+ + + A +
Sbjct: 193 KDPNEAVVFAYRRARCLSAESASGRASFAARHEGGESGAELQLALAPSAGSERIFARAQG 252
Query: 247 GQAAANAKTVYGENTHRTFSVVVDDCS-MRAVLRRL-QVGGGTLKFFLTTPVPS--LCVT 302
G A V F + ++ S R +L+++ QVGG L F P + + V+
Sbjct: 253 GGRRAALLEVRCSGGAPDFRLELESPSGFRRLLQKVRQVGGDALVRFYLAPASAAMMSVS 312
Query: 303 ATGPNAVSAVFLLKP 317
P ++ F +P
Sbjct: 313 TAAPEGLTVFFFCRP 327
>gi|9625891|ref|NP_040139.1| DNA polymerase-associated protein
[Human herpesvirus 3]
gi|136907|sp|P09274|VPAP_VZVD DNA POLYMERASE PROCESSIVITY FACTOR
(POLYMERASE ACCESSORY PROTEIN) (PAP) (DNA-BINDING GENE
16 PROTEIN)
gi|73836|pir||WZBE16 gene 16 protein - human herpesvirus 3
gi|60005|emb|CAA27899.1| unnamed protein product [Human herpesvirus
3]
Length = 408
Score = 97.4 bits (241), Expect = 5e-19
Identities = 73/279 (26%), Positives = 135/279 (48%), Gaps = 13/279 (4%)
Query: 12 SPVEDASDASLGQPEEGAP-CQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHN 70
S +DA D L + + VL L G++ + +PL L DS+L+ D G++IH
Sbjct: 5 SRTDDALDMELHAGFDAPEIARAVLTEKTLTGLISSISPLVNRLRDSILIFSDEGLIIHC 64
Query: 71 TIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL-RRVELAITG 129
++ EQ+++P+ + F +Y W GP L+ + + SL+ FR + P R+ TG
Sbjct: 65 SLETEQLYIPIPANMFDQYNWTGPRMVVLAATEGRSSLIDAFRHTKDPSTPTRLYFKFTG 124
Query: 130 QAPFRTLVQ-RIWTTTSD---GEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQL 185
Q P R+++Q +W D + V+ + ++KREL + ++ P TPD+ + L R Q
Sbjct: 125 QPPERSIIQTMVWQRPGDCGPDDQVQCYKQ-VVKRELACYTMMFPNLTPDISICLKRDQF 183
Query: 186 TKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTK 245
T++ T T F L + ++F + ++ S T ++ ++T
Sbjct: 184 TRLQRLLKTFGFT-TCFILTATDMYIQTAGGGFISFNVSLD-INGSKPTPYNLI-RSITN 240
Query: 246 AGQAAANAKTVYGENTHRTFSVVVDDCS-MRAVLRRLQV 283
+ + N VYG + R F V+++ S R+ ++ L++
Sbjct: 241 SKRILNN--VVYGSGSMREFGVLLETHSGFRSAVQNLKL 277
>gi|13242408|ref|NP_077431.1| DNA polymerase-associated protein
[Cercopithecine herpesvirus 7]
gi|11036560|gb|AAG27189.1|AF275348_9 DNA polymerase-associated
protein [Cercopithecine herpesvirus 7]
Length = 385
Score = 85.9 bits (211), Expect = 1e-15
Identities = 44/157 (28%), Positives = 81/157 (51%)
Query: 32 QVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRW 91
+ L+ L ++ + +PL L D++LV + G+LI+ ++ EQ+++P+ S F Y W
Sbjct: 21 RATLEQPNLERLIVSISPLFNRLKDAILVFSEDGLLIYCSLETEQIYIPIPSSVFLDYTW 80
Query: 92 RGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVE 151
GP L+ D + SL+ VF + + V ++G AP RT+VQ ++
Sbjct: 81 TGPKMVILATTDGRSSLMDVFHQTKGDSPKCVSFKVSGTAPCRTVVQTVFYNKQGSSTDV 140
Query: 152 LASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKV 188
+ L+K EL + +++P PD+ + L + Q K+
Sbjct: 141 TCYKQLVKCELACYTMMLPNIDPDITICLNKDQFLKL 177
>gi|9629330|ref|NP_044530.1| RS1 [Human herpesvirus 2]
gi|9629344|ref|NP_044544.1| RS1 [Human herpesvirus 2]
gi|1869883|emb|CAB06707.1| RS1 [Human herpesvirus 2]
gi|1869897|emb|CAB06701.1| RS1 [Human herpesvirus 2]
Length = 1318
Score = 51.2 bits (121), Expect = 4e-05
Identities = 54/173 (31%), Positives = 66/173 (37%), Gaps = 43/173 (24%)
Query: 331 SPSAGSSASRASGSEPTDSQDSASDAVSHGDPEDLDGAARAGEAGALHACPMPSSTTRVT 390
S +GSS+S +S S S SAS S D +D D AARA + A HA
Sbjct: 231 SSKSGSSSSASSASSSASSSSSAS--ASSSDDDDDDDAARAPASAADHAA---------- 278
Query: 391 PTTKRGRSGGEDARADTALKKPKTGSPTAPPPADPVP----------LDTEDDSDAADG- 439
G G +D A + P +PP A+P P L+ A G
Sbjct: 279 ----GGTLGADDEEAGVPARAPGAAPRPSPPRAEPAPARTPAATAGRLERRRARAAVAGR 334
Query: 440 ------TAARPAA----PDARSGSRYACYFRDLPTGEASPGAFSAFRGGPQTP 482
TA RP DA SG+ YA Y +GE PGA GP P
Sbjct: 335 DATGRFTAGRPRRVELDADAASGAFYARYRDGYVSGEPWPGA------GPPPP 381
>gi|21356133|ref|NP_650906.1| CG4000-PA [Drosophila melanogaster]
gi|7300646|gb|AAF55795.1| CG4000-PA [Drosophila melanogaster]
gi|15291447|gb|AAK92992.1| GH21518p [Drosophila melanogaster]
gi|21392196|gb|AAM48452.1| RH04014p [Drosophila melanogaster]
Length = 263
Score = 51.2 bits (121), Expect = 4e-05
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 334 AGSSASRASGSEPTDSQDSASDAVSHGDPEDLDGAARAGEAGALHACPMPSSTTRVTPTT 393
AG++A S+ D+QD+ + A + G GA +AG+AGAL + +
Sbjct: 96 AGAAALSLVASQSVDAQDAPAPAEAGG----AGGAGQAGQAGALLGGAGGAGGAGGGGSA 151
Query: 394 KRGRSGGEDARADTAL--KKPKTGSPTAPPPADPVPLDTEDDSDAADGTAARPAAPDARS 451
G GG TA + +G P AP PA P P D ED +D ADG P PD
Sbjct: 152 GGGGGGGGGGGGGTATSGQSGDSGQPGAPSPAGPQP-DGEDGADGADG----PDGPDGSK 206
Query: 452 GSR 454
G +
Sbjct: 207 GGK 209
Database: nr
Posted date: Aug 27, 2003 10:37 AM
Number of letters in database: 485,782,529
Number of sequences in database: 1,508,275
Lambda K H
0.314 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,673,387
Number of Sequences: 1508275
Number of extensions: 21331813
Number of successful extensions: 71475
Number of sequences better than 1.0e-04: 19
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 71423
Number of HSP's gapped (non-prelim): 24
length of query: 488
length of database: 485,782,529
effective HSP length: 128
effective length of query: 360
effective length of database: 292,723,329
effective search space: 105380398440
effective search space used: 105380398440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 118 (50.1 bits)