BLAST Search Results BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= HHVONE045 (488 letters) Database: nr 1,508,275 sequences; 485,782,529 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value gi|9629423|ref|NP_044644.1| subunit of replicative DNA polymeras... 969 0.0 gi|9629312|ref|NP_044512.1| subunit of replicative DNA polymeras... 650 0.0 gi|7546536|pdb|1DML|A Chain A, Crystal Structure Of Herpes Simpl... 622 e-177 gi|30984470|ref|NP_851902.1| DNA polymerase subunit [Cercopithec... 366 e-100 gi|28804678|dbj|BAC58082.1| subunit of replicative DNA polymeras... 364 2e-99 gi|22000958|gb|AAM82187.1| DNA polymerase processivity factor [B... 347 4e-94 gi|221781|dbj|BAA00746.1| UL42 [Human herpesvirus 2] 328 2e-88 gi|10834913|ref|NP_066874.1| UL42 protein [Gallid herpesvirus 3]... 121 3e-26 gi|3510311|dbj|BAA32578.1| UL42 protein [Marek's disease virus s... 120 4e-26 gi|9629742|ref|NP_045235.1| 18 [Equine herpesvirus 4] >gnl|BL_OR... 120 4e-26 gi|12084871|ref|NP_073336.1| UL42 DNA polymerase processivity su... 119 9e-26 gi|9626755|ref|NP_041027.1| DNA polymerase processivity factor [... 119 2e-25 gi|549422|sp|P36702|VPAP_PRVKA DNA POLYMERASE PROCESSIVITY FACTO... 117 4e-25 gi|9635076|ref|NP_057803.1| UL42 [Gallid herpesvirus 2] >gnl|BL_... 117 6e-25 gi|9629832|ref|NP_045316.1| processivity factor for DNA polymera... 103 9e-21 gi|9625891|ref|NP_040139.1| DNA polymerase-associated protein [H... 97 5e-19 gi|13242408|ref|NP_077431.1| DNA polymerase-associated protein [... 86 1e-15 gi|9629330|ref|NP_044530.1| RS1 [Human herpesvirus 2] >gnl|BL_OR... 51 4e-05 gi|21356133|ref|NP_650906.1| CG4000-PA [Drosophila melanogaster]... 51 4e-05>gi|9629423|ref|NP_044644.1| subunit of replicative DNA polymerase [Human herpesvirus 1] gi|136905|sp|P10226|VPAP_HSV11 DNA polymerase processivity factor (Polymerase accessory protein) (PAP) (DNA-binding protein UL42) gi|73837|pir||WMBE42 DNA-binding protein - human herpesvirus 1 (strain 17) gi|59542|emb|CAA32305.1| subunit of replicative DNA polymerase [Human herpesvirus 1] gi|330236|gb|AAA45824.1| UL42 [human herpesvirus 1] Length = 488 Score = 969 bits (2504), Expect = 0.0 Identities = 488/488 (100%), Positives = 488/488 (100%) Query: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV Sbjct: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60 Query: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL Sbjct: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120 Query: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL Sbjct: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180 Query: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS Sbjct: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240 Query: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC Sbjct: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300 Query: 301 VTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHG 360 VTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHG Sbjct: 301 VTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHG 360 Query: 361 DPEDLDGAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPTAP 420 DPEDLDGAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPTAP Sbjct: 361 DPEDLDGAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPTAP 420 Query: 421 PPADPVPLDTEDDSDAADGTAARPAAPDARSGSRYACYFRDLPTGEASPGAFSAFRGGPQ 480 PPADPVPLDTEDDSDAADGTAARPAAPDARSGSRYACYFRDLPTGEASPGAFSAFRGGPQ Sbjct: 421 PPADPVPLDTEDDSDAADGTAARPAAPDARSGSRYACYFRDLPTGEASPGAFSAFRGGPQ 480 Query: 481 TPYGFGFP 488 TPYGFGFP Sbjct: 481 TPYGFGFP 488>gi|9629312|ref|NP_044512.1| subunit of replicative DNA polymerase [Human herpesvirus 2] gi|1869865|emb|CAB06728.1| subunit of replicative DNA polymerase [Human herpesvirus 2] Length = 470 Score = 650 bits (1678), Expect = 0.0 Identities = 351/492 (71%), Positives = 381/492 (77%), Gaps = 26/492 (5%) Query: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60 M PGG A A EDA + + E+ PCQ+VLQGAELNGILQAFAPLRTSLLDSLLV Sbjct: 1 MAHLPGGAAAAPLSEDAIPSPRERTEDWPPCQIVLQGAELNGILQAFAPLRTSLLDSLLV 60 Query: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120 +GDRGIL+HN IFGEQVFLPL+HSQFSRYRW GPTAAFLSLVDQKRSLLSVFRANQYPDL Sbjct: 61 VGDRGILVHNAIFGEQVFLPLDHSQFSRYRWGGPTAAFLSLVDQKRSLLSVFRANQYPDL 120 Query: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180 RRVEL +TGQAPFRTLVQRIWTT SDGEAVELASETLMKRELTSF VL+PQG PDVQLRL Sbjct: 121 RRVELTVTGQAPFRTLVQRIWTTASDGEAVELASETLMKRELTSFAVLLPQGDPDVQLRL 180 Query: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240 T+PQLTKV+NA G ++A PTTFELG NGKFSVF TCVTFAAREEG SSSTS QVQIL+ Sbjct: 181 TKPQLTKVVNAVGDETAKPTTFELGPNGKFSVFNARTCVTFAAREEGASSSTSAQVQILT 240 Query: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300 +AL KAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLT VPS+C Sbjct: 241 SALKKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTADVPSVC 300 Query: 301 VTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSAS--DAVS 358 VTATGPNAVSAVFLLKPQ++CL+WLG S GS S GS AS+ S + PTDSQDS+S DA Sbjct: 301 VTATGPNAVSAVFLLKPQRVCLNWLGRSPGS-STGSLASQDSRAGPTDSQDSSSEPDAGD 359 Query: 359 HGDPED--LDGAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGS 416 G PE+ L+G AR A P P P TKR G E AD A K+PKTG Sbjct: 360 RGAPEEEGLEGQARVPP-----AFPEP-------PGTKRRHPGAEVVPADDATKRPKTGV 407 Query: 417 PTAPPPADPVPLDTEDDSDAADGTAARPAAPDARSGSRYACYFRDLPTGEASPGAFSAFR 476 P AP A+ PL +AA+G G RYACYFRDL TG+ASP SAFR Sbjct: 408 PAAPTRAESPPLSARYGPEAAEG---------GGDGGRYACYFRDLQTGDASPSPLSAFR 458 Query: 477 GGPQTPYGFGFP 488 G + PYGFG P Sbjct: 459 GPQRPPYGFGLP 470>gi|7546536|pdb|1DML|A Chain A, Crystal Structure Of Herpes Simplex Ul42 Bound To The C- Terminus Of Hsv Pol gi|7546538|pdb|1DML|C Chain C, Crystal Structure Of Herpes Simplex Ul42 Bound To The C- Terminus Of Hsv Pol gi|7546540|pdb|1DML|E Chain E, Crystal Structure Of Herpes Simplex Ul42 Bound To The C- Terminus Of Hsv Pol gi|7546542|pdb|1DML|G Chain G, Crystal Structure Of Herpes Simplex Ul42 Bound To The C- Terminus Of Hsv Pol Length = 319 Score = 622 bits (1603), Expect = e-177 Identities = 319/319 (100%), Positives = 319/319 (100%) Query: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV Sbjct: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60 Query: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL Sbjct: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120 Query: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL Sbjct: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180 Query: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS Sbjct: 181 TRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILS 240 Query: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC Sbjct: 241 NALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLC 300 Query: 301 VTATGPNAVSAVFLLKPQK 319 VTATGPNAVSAVFLLKPQK Sbjct: 301 VTATGPNAVSAVFLLKPQK 319>gi|30984470|ref|NP_851902.1| DNA polymerase subunit [Cercopithecine herpesvirus 1] gi|30844284|gb|AAP41460.1| DNA polymerase subunit [Cercopithecine herpesvirus 1] Length = 475 Score = 366 bits (939), Expect = e-100 Identities = 236/497 (47%), Positives = 290/497 (57%), Gaps = 52/497 (10%) Query: 10 PASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIH 69 P S + SD+ C++ L+G EL +L+AFAPLRT LLDS+LV+G+RG+LI Sbjct: 13 PGSGDDFDSDSDDACARSTVNCRLALRGPELTEMLRAFAPLRTCLLDSMLVVGERGVLIQ 72 Query: 70 NTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITG 129 TIFGEQVFLPL FS Y WRGP AAF+SLVDQKRSLL+ RA QYP L RV+L I+G Sbjct: 73 CTIFGEQVFLPLGRELFSLYEWRGPPAAFMSLVDQKRSLLNALRAGQYPGLSRVDLTISG 132 Query: 130 QAPFRTLVQRIWTTTSDGE--AVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTK 187 +AP RTL QR+W + E A EL + TLMKREL SFVVL+PQ DVQLRLT+PQL K Sbjct: 133 EAPQRTLRQRVWVEDPEAEAGATELRAATLMKRELASFVVLLPQDRADVQLRLTKPQLAK 192 Query: 188 VLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTS-TQVQILSNALTKA 246 +L A A PTT ELG +G+F+V CVTF AREEG + ST+ TQ+QILS AL K+ Sbjct: 193 IL----ALPAGPTTLELGPSGRFAVSGGGVCVTFVAREEGAAPSTADTQMQILSRALKKS 248 Query: 247 GQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGP 306 QAA AKT+YG N RTFS+ ++D + RAVL+RLQVGG TLKFF + PS+CVTATGP Sbjct: 249 DQAALAAKTIYGANLQRTFSLALEDGNWRAVLKRLQVGGATLKFFFASSTPSMCVTATGP 308 Query: 307 NAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHGDPEDLD 366 N+VSAVFLL PQ I S A+ + P + + + E+ Sbjct: 309 NSVSAVFLLDPQNI--------------ASVPEEAAAAPPPPGAEEGGERPGEKEKEERP 354 Query: 367 GAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPT-------- 418 A E A P+S P KR + DA A + +K P Sbjct: 355 EGAVGAEPDA------PAS-----PGAKRALA---DAAARASARKKSRLYPVYVVDADPR 400 Query: 419 ---APPPADPVPLDTEDDSDAADGTAAR--PAAPDARSGSRYACYFRDLP--TGEASPGA 471 +PPP+ P+D E S AADG AA PA + R+G YA YF + P G P A Sbjct: 401 VSPSPPPSPGGPVDPEPGS-AADGAAAESFPARGETRNG-LYARYFTNPPIIRGPLFPAA 458 Query: 472 FSAFRGGPQTPYGFGFP 488 S G GFG P Sbjct: 459 ASDQDPGAIPGSGFGIP 475>gi|28804678|dbj|BAC58082.1| subunit of replicative DNA polymerase [Cercopithecine herpesvirus 1] Length = 475 Score = 364 bits (935), Expect = 2e-99 Identities = 235/497 (47%), Positives = 289/497 (57%), Gaps = 52/497 (10%) Query: 10 PASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIH 69 P S + SD+ C++ L+G EL +L+AFAPLRT LLDS+LV+G+RG+LI Sbjct: 13 PGSGDDFDSDSDDACARSTVNCRLALRGPELTEMLRAFAPLRTCLLDSMLVVGERGVLIQ 72 Query: 70 NTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITG 129 TIFGEQVFLPL FS Y WRGP AAF+SLVDQKRSLL+ RA QYP L RV+L I+G Sbjct: 73 CTIFGEQVFLPLGRELFSLYEWRGPPAAFMSLVDQKRSLLNALRAGQYPGLSRVDLTISG 132 Query: 130 QAPFRTLVQRIWTTTSDGE--AVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTK 187 +AP RTL QR+W + E A EL + TLMKREL SFVVL+PQ DVQLRLT+PQL K Sbjct: 133 EAPQRTLRQRVWVEDPEAEAGATELRAATLMKRELASFVVLLPQDRADVQLRLTKPQLAK 192 Query: 188 VLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTS-TQVQILSNALTKA 246 +L A A PTT ELG +G+F+ CVTF AREEG + ST+ TQ+QILS AL K+ Sbjct: 193 IL----ALPAGPTTLELGPSGRFAASGGGVCVTFVAREEGAAPSTADTQMQILSRALKKS 248 Query: 247 GQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGP 306 QAA AKT+YG N RTFS+ ++D + RAVL+RLQVGG TLKFF + PS+CVTATGP Sbjct: 249 DQAALAAKTIYGANLQRTFSLALEDGNWRAVLKRLQVGGATLKFFFASSTPSMCVTATGP 308 Query: 307 NAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDAVSHGDPEDLD 366 N+VSAVFLL PQ I S A+ + P + + + E+ Sbjct: 309 NSVSAVFLLDPQNI--------------ASVPEEAAAAPPPPGAEEGGERPGEKEKEERP 354 Query: 367 GAARAGEAGALHACPMPSSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPT-------- 418 A E A P+S P KR + DA A + +K P Sbjct: 355 EGAVGAEPDA------PAS-----PGAKRALA---DAAARASTRKKSRLYPVYVVDADPR 400 Query: 419 ---APPPADPVPLDTEDDSDAADGTAAR--PAAPDARSGSRYACYFRDLP--TGEASPGA 471 +PPP+ P+D E S AADG AA PA + R+G YA YF + P G P A Sbjct: 401 VWPSPPPSPGGPVDPEPGS-AADGAAAESFPARGETRNG-LYARYFTNPPIIRGPLFPAA 458 Query: 472 FSAFRGGPQTPYGFGFP 488 S G GFG P Sbjct: 459 ASDQDPGAIPGSGFGIP 475>gi|22000958|gb|AAM82187.1| DNA polymerase processivity factor [Bovine herpesvirus 2] Length = 449 Score = 347 bits (889), Expect = 4e-94 Identities = 206/441 (46%), Positives = 264/441 (59%), Gaps = 38/441 (8%) Query: 31 CQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYR 90 C V+ G EL +LQAFAPLRTSLLDSLL+ G+RG++IH+ +FGEQV++ L+ S FS Y+ Sbjct: 16 CHAVIHGQELALMLQAFAPLRTSLLDSLLLFGERGLIIHSAVFGEQVYMRLDLSMFSTYQ 75 Query: 91 WRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAV 150 W GP AAF+S+VDQK+SLL VFRANQ DLRRVE ITG +PFRTL +R+WT ++G Sbjct: 76 WEGPPAAFMSIVDQKQSLLGVFRANQGVDLRRVEFEITGDSPFRTLTRRVWTNDAEGGPD 135 Query: 151 ELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKF 210 E LMKRE+TSF V+VPQG PDV +RLTR QL KV+ A + TFEL N KF Sbjct: 136 EPPGLRLMKREVTSFSVMVPQGKPDVLIRLTRSQLAKVV-AIATGESPRVTFELSANKKF 194 Query: 211 SVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVVD 270 SVF+ S CVTFA RE Q Q+LS AL ++GQ+AA AKTVYG++THR FS +D Sbjct: 195 SVFSQSACVTFAVRESSAPDGMVDQAQVLSRALGRSGQSAAAAKTVYGDHTHRAFSATLD 254 Query: 271 DCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGPNAVSAVFLLKPQKICLDWLGHSQG 330 +MR+VLRRLQVGG LKFFL PS+CVTATGP+ VSA+F+LKP +W G + Sbjct: 255 TENMRSVLRRLQVGGAALKFFLGDETPSVCVTATGPSLVSAIFMLKPLHFKYEWPG-PET 313 Query: 331 SPSAGSSASRA-------SGSEPTDSQDSASDAVSHGDPEDLDGAARAGEAGALHACPMP 383 +P G S +R +P+++ +A++ + D R EA P Sbjct: 314 APDVGGSKARTRPRSKPKQKLKPSNTTAVPEEAIARECFANSDTRGREDEA--------P 365 Query: 384 SSTTRVTPTTKRGRSGGEDARADTALKKPKTGSPTAPPPADPVPLDTEDDSDAADGTAAR 443 S TR D TA+ K +P P PA L E+ A GT + Sbjct: 366 SLPTR-------------DNELRTAISKE---APLEPSPAKKPRLSAEN----AAGTVSG 405 Query: 444 PAAP-DARSGSRYACYFRDLP 463 P + S + YF + P Sbjct: 406 GEVPRPLTTPSMFTAYFTNPP 426>gi|221781|dbj|BAA00746.1| UL42 [Human herpesvirus 2] Length = 204 Score = 328 bits (840), Expect = 2e-88 Identities = 166/204 (81%), Positives = 179/204 (87%) Query: 1 MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLV 60 M PGG A A EDA + + E+ PCQ+VLQGAELNGILQAFAPLRTSLLDSLLV Sbjct: 1 MAHLPGGAAAAPLSEDAIPSPRERTEDWPPCQIVLQGAELNGILQAFAPLRTSLLDSLLV 60 Query: 61 MGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL 120 +GDRGIL+HN IFGEQVFLPL+HSQFSRYRW GPTAAFLSLVDQKRSLLSVFRANQYPDL Sbjct: 61 VGDRGILVHNAIFGEQVFLPLDHSQFSRYRWGGPTAAFLSLVDQKRSLLSVFRANQYPDL 120 Query: 121 RRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRL 180 RRVEL +TGQAPFRTLVQRIWTT SDGEAVELASETLMKRELTSF VL+PQG PDVQLRL Sbjct: 121 RRVELTVTGQAPFRTLVQRIWTTASDGEAVELASETLMKRELTSFAVLLPQGDPDVQLRL 180 Query: 181 TRPQLTKVLNATGADSATPTTFEL 204 T+PQLTKV+NA G ++A PTTFEL Sbjct: 181 TKPQLTKVVNAVGDETAKPTTFEL 204>gi|10834913|ref|NP_066874.1| UL42 protein [Gallid herpesvirus 3] gi|5689314|dbj|BAA82938.1| UL42 product homolog [Marek's disease virus serotype 2 MDV2] gi|10800007|dbj|BAB16552.1| UL42 protein [Gallid herpesvirus 3] Length = 369 Score = 121 bits (303), Expect = 3e-26 Identities = 93/334 (27%), Positives = 151/334 (44%), Gaps = 19/334 (5%) Query: 14 VEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIF 73 ++DA S P +VVL G + + A + S+ + L++ D G++I TI Sbjct: 12 IDDAGATSNDSPNSW---KVVLAGEKFRTVSAAVRAIVDSVKNPLIIFSDDGLMIQGTIC 68 Query: 74 GEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPF 133 G+Q F+P+E + FS + WRG A FL+L D +R+LL F+ ++ + V G+ P Sbjct: 69 GQQTFVPIECAAFSEFEWRGSAAIFLALTDSRRTLLDAFKCDKKKAI-EVSFTFRGEPPS 127 Query: 134 RTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATG 193 R L Q + T +G S ++K EL VL PQ PDV + + QL K+L Sbjct: 128 RHLTQTVTYVTDNGS----FSSAIIKYELWCASVLFPQKIPDVTFSVNKQQLNKILAIAA 183 Query: 194 ADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKA---GQAA 250 TF L G F T ++F ++ +S+AL A +AA Sbjct: 184 KRRHEQLTFALKAEGGFYAGTVCDVISFDVDGSAMTQYPYNATTAVSSALVLACGKKRAA 243 Query: 251 ANAK-TVYGENTHRTFSVVVDD-CSMRAVLRRLQVG--GGTLKFFLTTPVPSLCVTATGP 306 NA T YG + F + ++D + R V+++++ G G L F+ P LCV Sbjct: 244 RNAPVTAYGSG--KPFCLALEDTTAFRNVVQKIKTGSAGADLGFYTACNPPMLCVRPQAF 301 Query: 307 NAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASR 340 +++A C+ + S + G+ S+ Sbjct: 302 GSLTAFLFCNSD--CMSIYELEEASVAVGAVTSK 333>gi|3510311|dbj|BAA32578.1| UL42 protein [Marek's disease virus serotype 2 MDV2] Length = 369 Score = 120 bits (302), Expect = 4e-26 Identities = 93/334 (27%), Positives = 151/334 (44%), Gaps = 19/334 (5%) Query: 14 VEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIF 73 ++DA S P +VVL G + + A + S+ + L++ D G++I TI Sbjct: 12 IDDAGATSNDSPNSW---KVVLAGEKFRTVSAAVRAIVDSVKNPLIIFSDDGLMIQGTIC 68 Query: 74 GEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPF 133 G+Q F+P+E + FS + WRG A FL+L D +R+LL F+ ++ + V G+ P Sbjct: 69 GQQTFVPIECAAFSEFEWRGSAAIFLALTDSRRTLLDAFKCDKKKAI-EVSFTFRGEPPS 127 Query: 134 RTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATG 193 R L Q + T +G S ++K EL VL PQ PDV + + QL K+L Sbjct: 128 RHLTQTVTYVTDNGS----FSSAIIKYELWCASVLFPQKIPDVTFSVNKQQLNKILAIAA 183 Query: 194 ADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKA---GQAA 250 TF L G F T ++F ++ +S+AL A +AA Sbjct: 184 KRRHEQLTFALKAEGGFYAGTVCDVISFDVDGSAMTQYPYNATTAVSSALVLACGKKRAA 243 Query: 251 ANAK-TVYGENTHRTFSVVVDD-CSMRAVLRRLQVG--GGTLKFFLTTPVPSLCVTATGP 306 NA T YG + F + ++D + R V+++++ G G L F+ P LCV Sbjct: 244 RNAPVTAYGSG--KPFCLALEDTTAFRNVVQKIKTGSAGADLGFYTACNPPMLCVRPHAF 301 Query: 307 NAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASR 340 +++A C+ + S + G+ S+ Sbjct: 302 GSLTAFLFCNSD--CMSIYELEEASVAVGAVTSK 333>gi|9629742|ref|NP_045235.1| 18 [Equine herpesvirus 4] gi|11278227|pir||T42561 DNA polymerase processivity factor - equine herpesvirus 4 (strain NS80567) gi|2605960|gb|AAC59532.1| 18 [Equine herpesvirus 4] Length = 406 Score = 120 bits (302), Expect = 4e-26 Identities = 95/366 (25%), Positives = 174/366 (46%), Gaps = 30/366 (8%) Query: 6 GGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRG 65 GG P + + +A A + P E V + L L+ P+ SL ++ L+ + G Sbjct: 10 GGSHPNNFLLNALPA-IDNPVERQRAMAVFERESLRDALEMLTPIAPSLKNAFLIFNEDG 68 Query: 66 ILIHNTIFGEQVFLPLEHSQFSRYRWR-GPTAAFLSLVDQKRSLLSVFRANQYPDLRRVE 124 +LIH ++ GEQV++P++ + + Y W+ P A FL+ VD +R LL FR P + +V Sbjct: 69 LLIHTSVGGEQVYIPIQTNNMASYSWQEAPPAVFLANVDGRRGLLDAFRTKAQPTVSKVV 128 Query: 125 LAITGQAPFRTLVQRIWTTTSDGE-----------AVELASETLMKRELTSFVVLVPQGT 173 I +P R L Q +++T+ E + S L+K E ++ +++P Sbjct: 129 FEIENASPTRILTQTVFSTSDQMEDDMDMGSDPENTTQAISTKLVKHEFNNYSLMLPTRK 188 Query: 174 PDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFA-----AREEGV 228 PDV + L++ QL K+L + P TF+ + V + V F+ A + G+ Sbjct: 189 PDVSMSLSKQQLNKILGVC-KQANEPITFQCLFDDTLQVRSGDRQVVFSVDYQNATKCGM 247 Query: 229 SSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVV-DDCSMRAVLRRLQV--GG 285 SS+S +L K + A + + G + + F++++ +D + + ++++L++ G Sbjct: 248 ESSSS----LLEKMPLKTKKTA--PEPIRGISGRKLFTLLLEEDTNFKQLIQKLKLKNAG 301 Query: 286 GTLKFFL-TTPVPSLCVTATGPNAVSAVFLLK-PQKICLDWLGHSQGSPSAGSSASRASG 343 L FFL +P + ++ P +V F+ PQ+ C HS SP++ + Sbjct: 302 AVLNFFLEPESIPMIGLSTKQPFSVMMFFMCSYPQQPCKVGFSHSAFSPNSLGVGLKRRA 361 Query: 344 SEPTDS 349 S+ DS Sbjct: 362 SDEDDS 367>gi|12084871|ref|NP_073336.1| UL42 DNA polymerase processivity subunit [Meleagrid herpesvirus 1] gi|11095875|gb|AAG30082.1|AF282130_45 UL42 DNA polymerase processivity factor [Meleagrid herpesvirus 1] gi|12025154|gb|AAG45780.1|AF291866_47 UL42 DNA polymerase processivity subunit [Meleagrid herpesvirus 1] Length = 369 Score = 119 bits (299), Expect = 9e-26 Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 18/279 (6%) Query: 32 QVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRW 91 +++L G + I + + + + + LL G G+++ T+ G+++F+P++ FS Y W Sbjct: 27 RIILAGEKFMTISASLKSIVSCVKNPLLTFGADGLIVQGTVCGQRIFVPIDRDSFSEYEW 86 Query: 92 RGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAIT--GQAPFRTLVQRIWTTTSDGEA 149 GPTA FL+L D +R+LL F+ + R ++++ T G+ P R L+Q + T +DG + Sbjct: 87 HGPTAMFLALTDSRRTLLDAFKCEK---RRAIDVSFTFAGEPPCRHLIQAV-TYMTDGGS 142 Query: 150 VELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGK 209 V S T++K EL + + PQ TPDV L + QL K+L F L G Sbjct: 143 V---SNTIIKYELWNASTIFPQKTPDVTFSLNKQQLNKILAVASKLQHEELVFSLKPEGG 199 Query: 210 FSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKA-GQAAANAKTV---YGENTHRTF 265 F V T T ++F ++ + AL A + AN T+ YG + F Sbjct: 200 FYVGTVCTVISFEVDGTAMTQYPYNPPTSATLALVVACRKKKANKNTILTAYGSG--KPF 257 Query: 266 SVVVDDCS-MRAVLRRLQVG--GGTLKFFLTTPVPSLCV 301 V ++D S R ++ +++ G G L F+ T P LC+ Sbjct: 258 CVALEDTSAFRNIVNKIKAGTSGVDLGFYTTCDPPMLCI 296>gi|9626755|ref|NP_041027.1| DNA polymerase processivity factor [Equine herpesvirus 1] gi|136906|sp|P28958|VPAP_HSVEB DNA POLYMERASE PROCESSIVITY FACTOR (POLYMERASE ACCESSORY PROTEIN) (PAP) (DNA-BINDING GENE 18 PROTEIN) gi|73838|pir||WZBEB2 DNA polymerase processivity factor - equine herpesvirus 1 (strain Ab4p) gi|330810|gb|AAB02453.1| DNA polymerase processivity factor Length = 405 Score = 119 bits (297), Expect = 2e-25 Identities = 99/373 (26%), Positives = 175/373 (46%), Gaps = 35/373 (9%) Query: 5 PGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDR 64 PGG P + + + + P E V + L + P+ SL ++ L+ + Sbjct: 9 PGGSHPNNFLFNTLPV-IDNPVERQRAMAVFERESLRDAFEMLTPIAPSLKNAFLIFNED 67 Query: 65 GILIHNTIFGEQVFLPLEHSQFSRYRW-RGPTAAFLSLVDQKRSLLSVFRANQYPDLRRV 123 G+LIH ++ GEQV++P++ + Y W + P A FL+ VD +R LL F+A ++ +V Sbjct: 68 GLLIHTSVGGEQVYIPIQTNNMESYSWKKAPPAVFLANVDGRRGLLDAFKAKTQTNVSKV 127 Query: 124 ELAITGQAPFRTLVQRIWTTT----------SDGE-AVELASETLMKRELTSFVVLVPQG 172 I +P R L Q +++ SD E A + S L+K E ++ +++P Sbjct: 128 VFEIENYSPSRILTQTVFSARDQTEEDTEMGSDAEGATQTVSSRLVKHEFNNYALMLPTR 187 Query: 173 TPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFA-----AREEG 227 PDV + L++ QL K+L + P TF+ + V + V F+ A G Sbjct: 188 QPDVSMSLSKAQLNKILGVC-KQAGDPITFQCLFDDTLQVRSGDRQVVFSVDYQHADNCG 246 Query: 228 VSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVVD-DCSMRAVLRRLQV--G 284 V SS+S +L K ++A + + G + R F++V+D D + + ++++L++ Sbjct: 247 VESSSS----LLEKMPMKTKKSA--PEPIRGISGRRLFTLVLDEDTNFKQLIQKLKLKNA 300 Query: 285 GGTLKFFL-TTPVPSLCVTATGPNAVSAVFLLK-PQKICLDWLGHSQGSPSAGSSASRAS 342 G L FFL +P + ++ P +V F+ P + C SP+A SS + Sbjct: 301 GAVLNFFLDPDSIPMIGLSTKQPFSVMMFFMCSYPTQPC-----QVGFSPAAFSSTPMGA 355 Query: 343 GSEPTDSQDSASD 355 G + S++ SD Sbjct: 356 GVKRRASEEEESD 368>gi|549422|sp|P36702|VPAP_PRVKA DNA POLYMERASE PROCESSIVITY FACTOR (POLYMERASE ACCESSORY PROTEIN) (PAP) (UL42 HOMOLOG) gi|334091|gb|AAA74384.1| homologue to HSV-1 UL42 gene Length = 384 Score = 117 bits (294), Expect = 4e-25 Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 26/303 (8%) Query: 26 EEGAPCQ----VVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPL 81 E+G P Q +VL L A APL L + LV + G+L+H ++ GEQV++ L Sbjct: 33 EDGEPLQRTGMLVLSDEHLEHARAAIAPLAAHLAHAFLVFSEAGLLVHASVRGEQVYVTL 92 Query: 82 EHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIW 141 QFS + W GP A FL VD +L + ++ + V + G P R L +R + Sbjct: 93 APDQFSTFVWSGPQAVFLGNVDGSGGVLDALKVDRRRTVFNVTFEVYGAFPARLLTRRAY 152 Query: 142 TTTSDGEAVELASET---LMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSAT 198 + A S + + K E + +++P PDV L L+RPQ+ K L A +A Sbjct: 153 FADAGVLATGPGSPSVACVYKHEFNDYCIMLPSRAPDVSLTLSRPQVAK-LAAVAKGAAA 211 Query: 199 PTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYG 258 TTF L FSV +++ VTF AR+ ++ L +A Q V Sbjct: 212 GTTFALARGLDFSVSSSAGVVTFPARDRDGTA-----------VLERASQRRQGVDAV-- 258 Query: 259 ENTHRTFSVVVDDC-SMRAVLRRLQVGGGTLKF-FLTTP--VPSLCVTATGPNAVSAVFL 314 F++ ++ + +L+RL+ G L F F TTP P VT GP + F Sbjct: 259 -GATEPFAMTLETAHGLLTLLQRLRAGNAELTFNFFTTPRQAPLFSVTTCGPVRATTFFF 317 Query: 315 LKP 317 P Sbjct: 318 CAP 320>gi|9635076|ref|NP_057803.1| UL42 [Gallid herpesvirus 2] gi|7673153|gb|AAF66777.1|AF147806_41 UL42 [Gallid herpesvirus 2] gi|10180747|gb|AAG14235.1|AF243438_50 UL42 DNA polymerase processivity subunit-like protein [Gallid herpesvirus 2] Length = 369 Score = 117 bits (292), Expect = 6e-25 Identities = 85/279 (30%), Positives = 139/279 (49%), Gaps = 18/279 (6%) Query: 32 QVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRW 91 ++VL G + A + + + L+ D G++I T+ G+++F+P++ + FS Y W Sbjct: 27 KIVLAGEKFMTASAALKTIVGCVKNPLITFSDDGLMIQGTVCGQRMFVPIDCTSFSEYEW 86 Query: 92 RGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAIT--GQAPFRTLVQRIWTTTSDGEA 149 RGPTA FL+L D +R+LL F+ ++ + VE+ T G+ P R L Q + T +DG + Sbjct: 87 RGPTAIFLALTDSRRTLLDAFKCDK---KKVVEVCFTFRGEPPCRHLTQTV-TYANDGCS 142 Query: 150 VELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGK 209 S T++K EL S ++ PQ TPD L + QL+K+L F L G Sbjct: 143 F---SSTIVKYELWSASIICPQKTPDATFSLNKQQLSKILTVAAKVQHEELIFALKAEGG 199 Query: 210 FSVFTTSTCVTF----AAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTF 265 F T ++F +A + ++TS L A K + A T YG + F Sbjct: 200 FYAGTICDVISFDIDGSAMVQYPYNATSHASSALIVACGKKKTNKSIAVTAYGSG--KPF 257 Query: 266 SVVVDDC-SMRAVLRRLQVG--GGTLKFFLTTPVPSLCV 301 + ++D + R V+++++ G G L F+ T P LCV Sbjct: 258 CLALEDTNAFRNVVQKIKTGAAGADLGFYTTCDPPMLCV 296>gi|9629832|ref|NP_045316.1| processivity factor for DNA polymerase [Bovine herpesvirus 1] gi|995640|emb|CAA90926.1| UL42 [Bovine herpesvirus 1] gi|2653305|emb|CAA06091.1| processivity factor for DNA polymerase [Bovine herpesvirus type 1.1] Length = 408 Score = 103 bits (256), Expect = 9e-21 Identities = 88/315 (27%), Positives = 141/315 (43%), Gaps = 24/315 (7%) Query: 18 SDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQV 77 SD G P A L G +L + +P SL ++ LV G+L+H+ ++ EQV Sbjct: 22 SDGGNGNPIASAS----LIGRQLADVSALLSPFGASLRNAFLVFSREGMLVHSGLYDEQV 77 Query: 78 FLPLEHSQFSRYRWR----GPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPF 133 ++ + +F+ ++W A FL+ VD +R LL FRA++ ++ V ITG+ P Sbjct: 78 YVAVPAEKFTSFQWAPARDDARAVFLANVDSRRGLLDAFRADKTRTVQNVAFLITGEPPA 137 Query: 134 RTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATG 193 L Q T EA L +L+K EL + +++P D+ + L+RPQL+K L A Sbjct: 138 SVLTQ----VTYFREADALLQASLVKHELGEYSIMLPTRGADLAVSLSRPQLSK-LQAVA 192 Query: 194 ADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSN-------ALTKA 246 D F S + S +FAAR EG S Q+ + + A + Sbjct: 193 KDPNEAVVFAYRRARCLSAESASGRASFAARHEGGESGAELQLALAPSAGSERIFARAQG 252 Query: 247 GQAAANAKTVYGENTHRTFSVVVDDCS-MRAVLRRL-QVGGGTLKFFLTTPVPS--LCVT 302 G A V F + ++ S R +L+++ QVGG L F P + + V+ Sbjct: 253 GGRRAALLEVRCSGGAPDFRLELESPSGFRRLLQKVRQVGGDALVRFYLAPASAAMMSVS 312 Query: 303 ATGPNAVSAVFLLKP 317 P ++ F +P Sbjct: 313 TAAPEGLTVFFFCRP 327>gi|9625891|ref|NP_040139.1| DNA polymerase-associated protein [Human herpesvirus 3] gi|136907|sp|P09274|VPAP_VZVD DNA POLYMERASE PROCESSIVITY FACTOR (POLYMERASE ACCESSORY PROTEIN) (PAP) (DNA-BINDING GENE 16 PROTEIN) gi|73836|pir||WZBE16 gene 16 protein - human herpesvirus 3 gi|60005|emb|CAA27899.1| unnamed protein product [Human herpesvirus 3] Length = 408 Score = 97.4 bits (241), Expect = 5e-19 Identities = 73/279 (26%), Positives = 135/279 (48%), Gaps = 13/279 (4%) Query: 12 SPVEDASDASLGQPEEGAP-CQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHN 70 S +DA D L + + VL L G++ + +PL L DS+L+ D G++IH Sbjct: 5 SRTDDALDMELHAGFDAPEIARAVLTEKTLTGLISSISPLVNRLRDSILIFSDEGLIIHC 64 Query: 71 TIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDL-RRVELAITG 129 ++ EQ+++P+ + F +Y W GP L+ + + SL+ FR + P R+ TG Sbjct: 65 SLETEQLYIPIPANMFDQYNWTGPRMVVLAATEGRSSLIDAFRHTKDPSTPTRLYFKFTG 124 Query: 130 QAPFRTLVQ-RIWTTTSD---GEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQL 185 Q P R+++Q +W D + V+ + ++KREL + ++ P TPD+ + L R Q Sbjct: 125 QPPERSIIQTMVWQRPGDCGPDDQVQCYKQ-VVKRELACYTMMFPNLTPDISICLKRDQF 183 Query: 186 TKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTK 245 T++ T T F L + ++F + ++ S T ++ ++T Sbjct: 184 TRLQRLLKTFGFT-TCFILTATDMYIQTAGGGFISFNVSLD-INGSKPTPYNLI-RSITN 240 Query: 246 AGQAAANAKTVYGENTHRTFSVVVDDCS-MRAVLRRLQV 283 + + N VYG + R F V+++ S R+ ++ L++ Sbjct: 241 SKRILNN--VVYGSGSMREFGVLLETHSGFRSAVQNLKL 277>gi|13242408|ref|NP_077431.1| DNA polymerase-associated protein [Cercopithecine herpesvirus 7] gi|11036560|gb|AAG27189.1|AF275348_9 DNA polymerase-associated protein [Cercopithecine herpesvirus 7] Length = 385 Score = 85.9 bits (211), Expect = 1e-15 Identities = 44/157 (28%), Positives = 81/157 (51%) Query: 32 QVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRW 91 + L+ L ++ + +PL L D++LV + G+LI+ ++ EQ+++P+ S F Y W Sbjct: 21 RATLEQPNLERLIVSISPLFNRLKDAILVFSEDGLLIYCSLETEQIYIPIPSSVFLDYTW 80 Query: 92 RGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVE 151 GP L+ D + SL+ VF + + V ++G AP RT+VQ ++ Sbjct: 81 TGPKMVILATTDGRSSLMDVFHQTKGDSPKCVSFKVSGTAPCRTVVQTVFYNKQGSSTDV 140 Query: 152 LASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKV 188 + L+K EL + +++P PD+ + L + Q K+ Sbjct: 141 TCYKQLVKCELACYTMMLPNIDPDITICLNKDQFLKL 177>gi|9629330|ref|NP_044530.1| RS1 [Human herpesvirus 2] gi|9629344|ref|NP_044544.1| RS1 [Human herpesvirus 2] gi|1869883|emb|CAB06707.1| RS1 [Human herpesvirus 2] gi|1869897|emb|CAB06701.1| RS1 [Human herpesvirus 2] Length = 1318 Score = 51.2 bits (121), Expect = 4e-05 Identities = 54/173 (31%), Positives = 66/173 (37%), Gaps = 43/173 (24%) Query: 331 SPSAGSSASRASGSEPTDSQDSASDAVSHGDPEDLDGAARAGEAGALHACPMPSSTTRVT 390 S +GSS+S +S S S SAS S D +D D AARA + A HA Sbjct: 231 SSKSGSSSSASSASSSASSSSSAS--ASSSDDDDDDDAARAPASAADHAA---------- 278 Query: 391 PTTKRGRSGGEDARADTALKKPKTGSPTAPPPADPVP----------LDTEDDSDAADG- 439 G G +D A + P +PP A+P P L+ A G Sbjct: 279 ----GGTLGADDEEAGVPARAPGAAPRPSPPRAEPAPARTPAATAGRLERRRARAAVAGR 334 Query: 440 ------TAARPAA----PDARSGSRYACYFRDLPTGEASPGAFSAFRGGPQTP 482 TA RP DA SG+ YA Y +GE PGA GP P Sbjct: 335 DATGRFTAGRPRRVELDADAASGAFYARYRDGYVSGEPWPGA------GPPPP 381>gi|21356133|ref|NP_650906.1| CG4000-PA [Drosophila melanogaster] gi|7300646|gb|AAF55795.1| CG4000-PA [Drosophila melanogaster] gi|15291447|gb|AAK92992.1| GH21518p [Drosophila melanogaster] gi|21392196|gb|AAM48452.1| RH04014p [Drosophila melanogaster] Length = 263 Score = 51.2 bits (121), Expect = 4e-05 Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 11/123 (8%) Query: 334 AGSSASRASGSEPTDSQDSASDAVSHGDPEDLDGAARAGEAGALHACPMPSSTTRVTPTT 393 AG++A S+ D+QD+ + A + G GA +AG+AGAL + + Sbjct: 96 AGAAALSLVASQSVDAQDAPAPAEAGG----AGGAGQAGQAGALLGGAGGAGGAGGGGSA 151 Query: 394 KRGRSGGEDARADTAL--KKPKTGSPTAPPPADPVPLDTEDDSDAADGTAARPAAPDARS 451 G GG TA + +G P AP PA P P D ED +D ADG P PD Sbjct: 152 GGGGGGGGGGGGGTATSGQSGDSGQPGAPSPAGPQP-DGEDGADGADG----PDGPDGSK 206 Query: 452 GSR 454 G + Sbjct: 207 GGK 209Database: nr Posted date: Aug 27, 2003 10:37 AM Number of letters in database: 485,782,529 Number of sequences in database: 1,508,275 Lambda K H 0.314 0.130 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 484,673,387 Number of Sequences: 1508275 Number of extensions: 21331813 Number of successful extensions: 71475 Number of sequences better than 1.0e-04: 19 Number of HSP's better than 0.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 71423 Number of HSP's gapped (non-prelim): 24 length of query: 488 length of database: 485,782,529 effective HSP length: 128 effective length of query: 360 effective length of database: 292,723,329 effective search space: 105380398440 effective search space used: 105380398440 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)