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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs874208          
refSNP ID: rs874208
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
NM_021226.2:c.1869-1650T>A
NT_017696.14:g.460776A>T
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss1298270 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs874208 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss1298270TSC-CSHL|TSC0204367fwd/TA/Ttgctggctgcagctctggggtctccttcccgggccctccaaccttctaccctgaggctcc09/06/0010/10/0386Genomic95 %
ss15975604SC_SNP|NT_017696.14_460776fwd/TA/Ttgctggctgcagctctggggtctccttcccgggccctccaaccttctaccctgaggctcc11/18/0311/22/03120Genomicunknown
ss77272374HGSV|Cor12156_SNV_20070510.chr10_49326318fwd/A/Ttgctggctgcagctctggggtctccttcccgggccctccaaccttctaccctgaggctcc10/09/0710/12/07129Genomicunknown
ss1094085831000GENOMES|CEU.trio.12.15.2008_2342582_chr10_49326318fwd/A/Ttgctggctgcagctctggggtctccttcccgggccctccaaccttctaccctgaggctcc12/15/0812/16/08130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs874208|allelePos=448|totalLen=831|taxid=9606|snpclass=1|alleles='A/T'|mol=Genomic|build=130
 CTGAACAATG ATGTCCTCcc ctaagtccat tctttttctc ggtcccatat ctgatcagtt
 agcaaaacct tttggctcta ccttcaaaat atgctcagca cctggccgct tcccccacct
 ccacctgctg ccccataggg ccacaccccc cataggtcag gcctagaccc ccacacctcc
 taactggtct gttctgccct tgtcccctgg caagctctgc tcggcatggc acccaggtgc
 acctgtcaaa gtgcccaatg tgccaaaccc tccagcggct tctcacttca ttctcatctc
 actccacgaa aaaccagagc attgcccagg ccaaaaggcc ccacccattg ccccctcccc
 acacatctcc agtccccagc ccctgactct cccccACTAC AGGGGTCTTG GGGTCAGTGC
 TGGCTGCAGC TCTGGGGTCT CCTTCCC
 W
 GGGCCCTCCA ACCTTCTACC CTGAGGCTCC TCTCCGCTCC CCTCCATGCT GCTCTATGTT
 CCCCTCCTTC ATCTCCCTTT TAACACACCG TGTATTTTTA AAAATGTATC GTGCTTATGG
 TCTTTGTCTC CCTGCAACCC AAATAAGAAT GGGGACAGAG ATTTTGATCA GTTTTCACCC
 CAACTGTGGC CACCTGCACA GCATCTGGTA CTTCACAGAA AACAGGTTCT CTTTTGGGAA
 TGCACGAAGG AAGGCTGACT CCAGCAGGGC CCTGGGGAGG GGCTCTGACC AGATCCCTGG
 GAGCCAGACA AGGCCAGCTA CCCCACCCCC ACCCGATGGC CCATACTTCA GAGACAGGAA
 CACATTCCCC AATCACTGCT GGA

  GeneView back to top
GeneView via analysis of contig annotation: ARHGAP22 Rho GTPase activating protein 22
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_017696->NM_021226
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_017696->NM_021226->NP_067049460776reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs874208 maps exactly once on NCBI human chromosome 10
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
10NW_924685.128437343242219plusAalt_assembly_1CeleraCeleraview447
10NW_001837974.128705943921136plusAalt_assembly_8HuRefHuRefview447
10NT_017696.1446077649326318plusAref_assemblyreferencereferenceview447

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_017696
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
with2hit
DoubleHit found by:  BCM_SSAHASNP, NCBI
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .