* bits * scan 3.42 * with matrix from: *********************************************************** *********************************************************** * scan matrix is FROM = -9, TO = 9 * region used for the scan is FROM = -9, TO = 9 **************************************************** * Paramters used by scan: * todo: 2147483647 * cutDNRi: 3.0 * cutUPRi: 2147483647.0 * cutDNZ: 0.0 * cutUPZ: 100.0 * cutDNP: 0.0 * cutUPP: 1.0 * fromwanted: -9 * towanted: 9 * ways: 0 * sitedefinition: define "Fur-M9-24" " w" " " " " -9.0 9.0 * (no control) * (no control) * (no control) * Ri:4:1 * string: "" bits"" * (no control) * (no control) * (no control) * (no control) * .: end of print definitions * DFi DFI: capitals mean data, scanfeatures, scaninst written * n normalizeRi: n: normal, s: Ri(l)-Ri(0), d: Ri(l)/Ri(0) * -50 50 range to make the scaninst file (if made) **************************************************** * Scan of book: * 2006/10/26 01:15:47, 2006/10/26 01:15:47, furoligos * mean = 19.684195 * stdev = 4.628724 * * lowest Ri cutoff = 3.000000 * highest Ri cutoff = 2147483647.000000 * lowest Z cutoff = 0.000000 * highest Z cutoff = 100.000000 * lowest probability = 0.000000 * highest probability = 1.000000 * The sequences in the book will be scanned one way * since the matrix is symmetric * * DEFINITION OF THE DATA COLUMNS: * 1 piece number * 2 piece length * 3 piece name * 4 piece coordinate * 5 matrix orientation (+1 = as in book, -1 = complement) * 6 Ri evaluation (bits per site) * 7 Z * 8 probability * 9 0, meaning: not normalizing Ri * 1 123 yoeA 19 1 5.300838 -3.107413 0.000944 0 1 123 yoeA 25 1 27.145110 1.611873 0.053495 0 1 123 yoeA 28 1 4.746056 -3.227269 0.000625 0 1 123 yoeA 31 1 7.253309 -2.685597 0.003620 0 1 123 yoeA 37 1 9.764625 -2.143046 0.016055 0 1 123 yoeA 43 1 4.822012 -3.210860 0.000662 0 1 123 yoeA 85 1 4.822012 -3.210860 0.000662 0 1 123 yoeA 91 1 9.764625 -2.143046 0.016055 0 1 123 yoeA 97 1 7.253309 -2.685597 0.003620 0 1 123 yoeA 100 1 4.746056 -3.227269 0.000625 0 1 123 yoeA 103 1 27.145110 1.611873 0.053495 0 1 123 yoeA 109 1 5.300838 -3.107413 0.000944 0 * 12 sites found in piece yoeA * 105 positions evaluated 2 123 fepD-entS 25 1 9.902602 -2.113237 0.017290 0 2 123 fepD-entS 31 1 20.124592 0.095144 0.462100 0 2 123 fepD-entS 37 1 12.961341 -1.452421 0.073192 0 2 123 fepD-entS 43 1 3.551461 -3.485352 0.000246 0 2 123 fepD-entS 85 1 3.551461 -3.485352 0.000246 0 2 123 fepD-entS 91 1 12.961341 -1.452421 0.073192 0 2 123 fepD-entS 97 1 20.124592 0.095144 0.462100 0 2 123 fepD-entS 103 1 9.902602 -2.113237 0.017290 0 * 8 sites found in piece fepD-entS * 105 positions evaluated 3 99 gpmA 19 1 5.844609 -2.989935 0.001395 0 3 99 gpmA 22 1 6.857734 -2.771058 0.002794 0 3 99 gpmA 25 1 27.145110 1.611873 0.053495 0 3 99 gpmA 31 1 4.283622 -3.327175 0.000439 0 3 99 gpmA 73 1 4.283622 -3.327175 0.000439 0 3 99 gpmA 79 1 27.145110 1.611873 0.053495 0 3 99 gpmA 82 1 6.857734 -2.771058 0.002794 0 3 99 gpmA 85 1 5.844609 -2.989935 0.001395 0 * 8 sites found in piece gpmA * 81 positions evaluated 4 99 ryhB 19 1 7.553426 -2.620759 0.004387 0 4 99 ryhB 25 1 25.345133 1.223002 0.110664 0 4 99 ryhB 31 1 7.793233 -2.568950 0.005100 0 4 99 ryhB 73 1 7.793233 -2.568950 0.005100 0 4 99 ryhB 79 1 25.345133 1.223002 0.110664 0 4 99 ryhB 85 1 7.553426 -2.620759 0.004387 0 * 6 sites found in piece ryhB * 81 positions evaluated 5 111 fhuA 25 1 10.562841 -1.970598 0.024385 0 5 111 fhuA 31 1 19.862049 0.038424 0.484675 0 5 111 fhuA 37 1 5.359731 -3.094690 0.000985 0 5 111 fhuA 79 1 5.359731 -3.094690 0.000985 0 5 111 fhuA 85 1 19.862049 0.038424 0.484675 0 5 111 fhuA 91 1 10.562841 -1.970598 0.024385 0 * 6 sites found in piece fhuA * 93 positions evaluated 6 99 nohA 19 1 12.689814 -1.511082 0.065384 0 6 99 nohA 25 1 20.836119 0.248864 0.401733 0 6 99 nohA 79 1 20.836119 0.248864 0.401733 0 6 99 nohA 85 1 12.689814 -1.511082 0.065384 0 * 4 sites found in piece nohA * 81 positions evaluated 7 111 oppA 25 1 9.564414 -2.186300 0.014397 0 7 111 oppA 31 1 21.163066 0.319499 0.374674 0 7 111 oppA 85 1 21.163066 0.319499 0.374674 0 7 111 oppA 91 1 9.564414 -2.186300 0.014397 0 * 4 sites found in piece oppA * 93 positions evaluated 8 99 gspC 22 1 3.519678 -3.492219 0.000240 0 8 99 gspC 28 1 14.304473 -1.162247 0.122568 0 8 99 gspC 76 1 14.304473 -1.162247 0.122568 0 8 99 gspC 82 1 3.519678 -3.492219 0.000240 0 * 4 sites found in piece gspC * 81 positions evaluated 9 105 yhaU 22 1 8.567583 -2.401658 0.008160 0 9 105 yhaU 25 1 11.041513 -1.867185 0.030938 0 9 105 yhaU 28 1 14.266622 -1.170425 0.120915 0 9 105 yhaU 31 1 6.570278 -2.833160 0.002305 0 9 105 yhaU 79 1 6.570278 -2.833160 0.002305 0 9 105 yhaU 82 1 14.266622 -1.170425 0.120915 0 9 105 yhaU 85 1 11.041513 -1.867185 0.030938 0 9 105 yhaU 88 1 8.567583 -2.401658 0.008160 0 * 8 sites found in piece yhaU * 87 positions evaluated 10 111 yahA 25 1 14.330667 -1.156588 0.123720 0 10 111 yahA 31 1 16.588191 -0.668868 0.251790 0 10 111 yahA 85 1 16.588191 -0.668868 0.251790 0 10 111 yahA 91 1 14.330667 -1.156588 0.123720 0 * 4 sites found in piece yahA * 93 positions evaluated 11 99 fadD 19 1 3.779920 -3.435996 0.000295 0 11 99 fadD 25 1 22.961620 0.708062 0.239453 0 11 99 fadD 79 1 22.961620 0.708062 0.239453 0 11 99 fadD 85 1 3.779920 -3.435996 0.000295 0 * 4 sites found in piece fadD * 81 positions evaluated * 0 sites found in piece ygaC * 81 positions evaluated 13 107 exbB 24 1 18.887751 -0.172066 0.431693 0 13 107 exbB 36 1 3.205488 -3.560097 0.000185 0 13 107 exbB 76 1 3.205488 -3.560097 0.000185 0 13 107 exbB 88 1 18.887751 -0.172066 0.431693 0 * 4 sites found in piece exbB * 89 positions evaluated * 0 sites found in piece exbD * 89 positions evaluated 15 109 fhuF 16 1 22.090320 0.519825 0.301593 0 15 109 fhuF 33 1 22.386711 0.583858 0.279658 0 15 109 fhuF 39 1 15.947184 -0.807352 0.209732 0 15 109 fhuF 75 1 15.947184 -0.807352 0.209732 0 15 109 fhuF 81 1 22.386711 0.583858 0.279658 0 15 109 fhuF 98 1 22.090320 0.519825 0.301593 0 * 6 sites found in piece fhuF * 91 positions evaluated * * 78 sites found in this book in * 1331 total positions evaluated * 4.0928926370 effective Rfrequency (bits per site)