Reference SNP(refSNP) Cluster Report: rs13172732

Reference SNP(refSNP) Cluster Report: rs13172732

refSNP ID: rs13172732
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	121/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_052909.3:c.2409-2740C>T
NT_006576.15:g.156715C>T

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss22296891 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs13172732 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss22296891	SSAHASNP\|WGSA-200403-chr5.chr5.NT_023089.13_149453		fwd/B	C/T	cggggctcacactaatgctctggcaggagg	ggagctcaggtggcaacactccctcgcctg	03/21/04	03/21/04	121	Genomic			unknown
ss92954624	BCMHGSC_JDW\|JWB-1920892		fwd/B	C/T	cggggctcacactaatgctctggcaggagg	ggagctcaggtggcaacactccctcgcctg	02/26/08	03/03/08	129	Genomic			unknown

Fasta sequence (Legend)

 GTAATCCTCT GACGGGGCGG AGCTCACACT AATGCTCTGA CGGGGCGGAG CTCACACTAA
 TGCTCTGACG GGGCGGAGCT CACACTAATG CTCTGACGGG GCGGGGCTCA CAGTAATCTT
 CTGACGGGGC GGAGCTCACA CTAATGCTCT GACGGGGCGG GGCTCACACT AAtgctctga
 cggggcgggg ctcacactaa tgctctggca ggagg
 Y
 ggagctcagg tggcaacact ccctcgcctg ccactcacct cctgctgggc ggcctggttc
 ctaataggcc acagatgggt accagtcggt ggccctgggg gttggaggcc tctgCCTTAA
 GGTCCATAGA AGGGGTTTCC TCCTCACACC CTGATCATAG GTTTAATCTG AACGGAGAAG
 GCCCAAGAAC ACTCTTCTGA AACACACCTT TAGGTTGCCA GACTCAGTGT TTACCTTGTT
 AAAGGCAAAG CTCCAAGTAG AACATTAAGT TCTGGTTTTT ACCATTGGTG TGAGTGATCC
 AGGGTGTATC TGCC

GeneView

GeneView via analysis of contig annotation: PLEKHG4B pleckstrin homology domain containing, family G (with RhoGef domain) member 4B

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_006576->NM_052909

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_006576->NM_052909->NP_443141	156715	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs13172732 maps exactly once on NCBI human chromosome 5

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
5	NW_001838923.2	1966164	156807	minus	A	alt_assembly_8	HuRef	HuRef	view	215
5	NT_006576.15	156715	219715	plus	C	ref_assembly	reference	reference	view	215
5	NW_922496.1	154550	266622	plus	T	alt_assembly_1	Celera	Celera	view	215

NCBI Resource Links

Submitter-Referenced
GenBank
NT_023089

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .