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Genomic biology
Bos taurus
Canis familiaris
Danio rerio
Homo sapiens
Mus musculus
Rattus novegicus
Sus scrofa

UniSTS:50247 Links
WI-15995
Bos taurus chromosome 11, loci LOC782101 and COPS2
Canis familiaris chromosome 30, locus COPS2
Equus caballus chromosome 1, locus LOC100055653
Gallus gallus chromosome 10, locus COPS2
Homo sapiens chromosome 15, locus COPS2
Macaca mulatta chromosome 7, locus LOC714814
Monodelphis domestica chromosome 3;1
Mus musculus chromosome 2, locus Cops2
Pan troglodytes chromosome 15, locus COPS2
Rattus norvegicus chromosome 3, locus Cops2
Sus scrofa locus COPS2

Found by e-PCR in sequences from Bos taurus, Canis familiaris, Gallus gallus, Homo sapiens, Mus musculus, Ovis aries, Pan troglodytes, Rattus norvegicus and Sus scrofa.

Primer InformationHelp

Forward primer:GCTGCACTGTTTATTTTGCTG
Reverse primer:AATGTTTGCTGCATTTTGCA
PCR product size:150 (bp), Homo sapiens
GenBank Accession:G24096 H01167

   Bos taurus
Name: WI-15995
Polymorphism info:  

Cross References Help
Gene GeneID:613584
 Symbol:COPS2
 Description:COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)
 Position: 
Gene GeneID:782101
 Symbol:LOC782101
 Description:similar to TRIP15-ISO
 Position: 
UniGeneBt.74827 Similar to COP9 complex subunit 2

Mapping InformationHelp
WI-15995 Sequence Map: Chr 11 Map Viewer
  Position: 86678749-86678898 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
XM_001250691.1 1832 .. 1981 (150 bp)  
 
Genomic (1)
CM000187.3 86678749 .. 86678898 (150 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (2)
AC182945.2 125861 .. 126010 (150 bp)  
AC219962.1 24794 .. 24943 (150 bp)  
 
ESTs (5 of 10)[Show All Hits]
AM032760.1 573 .. 722 (150 bp)  
AM033417.1 13 .. 162 (150 bp)  
DV883486.1 309 .. 458 (150 bp)  
DV907062.1 118 .. 267 (150 bp)  
DV922968.1 118 .. 267 (150 bp)  
 
Whole Genome Shotgun sequences (1)
AAFC03041781.1 24794 .. 24943 (150 bp)  
 

   Canis familiaris
Name: WI-15995
Polymorphism info:  

Cross References Help
Gene GeneID:478295
 Symbol:COPS2
 Description:COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)
 Position: 

Mapping InformationHelp
WI-15995 Sequence Map: Chr 30 Map Viewer
  Position: 18325806-18325956 (bp)

Electronic PCR results Help
RefSeq mRNA (5)
XM_535470.2 1829 .. 1979 (151 bp)  
XM_856858.1 1703 .. 1853 (151 bp)  
XM_856888.1 1736 .. 1886 (151 bp)  
XM_856916.1 1832 .. 1982 (151 bp)  
XM_845582.1 1880 .. 2030 (151 bp)  
 
Genomic (1)
CM000030.2 18325806 .. 18325956 (151 bp)  
 
ESTs (1)
CF409150.1 436 .. 586 (151 bp)  
 
Whole Genome Shotgun sequences (1)
AAEX02018873.1 73942 .. 74092 (151 bp)  
 

   Equus caballus
Name: WI-15995
Polymorphism info:  

Cross References Help
Gene GeneID:100055653
 Symbol:LOC100055653
 Description:similar to COP9 complex subunit 2
 Position: 
UniGeneEca.14068 Similar to COP9 complex subunit 2

Mapping InformationHelp
WI-15995 Sequence Map: Chr 1 Map Viewer
  Position: 140756201-140756350 (bp)

   Gallus gallus
Name: WI-15995
Polymorphism info:  

Cross References Help
Gene GeneID:430917
 Symbol:COPS2
 Description:COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)
 Position: 
UniGeneGga.4801 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)

Mapping InformationHelp
WI-15995 Sequence Map: Chr 10 Map Viewer
  Position: 11987052-11987199 (bp)

Electronic PCR results Help
Genomic (1)
CM000102.2 11987052 .. 11987199 (148 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
AC200276.1 109064 .. 109211 (148 bp)  
 
ESTs (5 of 7)[Show All Hits]
AJ395166.1 150 .. 297 (148 bp)  
BU241786.1 497 .. 644 (148 bp)  
BU394458.1 376 .. 523 (148 bp)  
BU349566.1 412 .. 559 (148 bp)  
BU469388.1 487 .. 634 (148 bp)  
 
Whole Genome Shotgun sequences (1)
AADN02045200.1 3537 .. 3684 (148 bp)  
 

   Homo sapiens
Name: WI-15995
Also known as: EST261047
Polymorphism info:  

Cross References Help
Gene GeneID:9318
 Symbol:COPS2
 Description:COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)
 Position:15q21.2
UniGeneHs.369614 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)

Mapping InformationHelp
WI-15995 Sequence Map: Chr 15|HuRef Map Viewer
  Position: 26251627-26251776 (bp)
 
WI-15995 Sequence Map: Chr 15|Celera Map Viewer
  Position: 26313128-26313277 (bp)
 
WI-15995 Sequence Map: Chr 15 Map Viewer
  Position: 47206846-47206995 (bp)
 
WI-15995 NCBI RH Map: Chr 15 Map Viewer
  Position: 196.9 (cR)
  Lod score: 1.93
 
WI-15995 Whitehead-RH Map: Chr 15 Map Viewer
  Position: 121.6 (cR3000)
  Lod score: P1.50
 
WI-15995 GeneMap99-GB4 Map: Chr 15 Map Viewer
  Position: 168.93 (cR3000)
  Lod score: 0.87
  Reference Interval: D15S146-D15S117

Electronic PCR results Help
mRNA (5 of 6)[Show All Hits]
AF120268.1 1769 .. 1918 (150 bp)  
AF100762.1 1778 .. 1927 (150 bp)  
AF212227.1 1799 .. 1948 (150 bp)  
BX648602.1 157 .. 306 (150 bp)  
AB209799.1 1802 .. 1951 (150 bp)  
 
Genomic (5 of 8)[Show All Hits]
G24096.1 1 .. 150 (150 bp)  
AC013452.9 89961 .. 90110 (150 bp)  
CH003462.1 25762659 .. 25762808 (150 bp)  
CH003510.1 28168431 .. 28168580 (150 bp)  
CH471082.1 5410945 .. 5411094 (150 bp)  
 
ESTs (5 of 83)[Show All Hits]
Z28951.1 12 .. 161 (150 bp)  
H01167.1 1 .. 150 (150 bp)  
H40491.1 8 .. 157 (150 bp)  
N50808.1 20 .. 169 (150 bp)  
N62168.1 19 .. 168 (150 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01143121.1 3006 .. 3155 (150 bp)  
AADC01120706.1 7323 .. 7472 (150 bp)  
AADB02016439.1 34553 .. 34702 (150 bp)  
ABBA01039130.1 66550 .. 66699 (150 bp)  
 

   Macaca fascicularis
 
Polymorphism info:  

Cross References Help
UniGeneMfa.8834 Macaca fascicularis brain cDNA clone: QmoA-10308, similar to human aminoacyl...


   Macaca mulatta
Name: WI-15995
Polymorphism info:  

Cross References Help
Gene GeneID:714814
 Symbol:LOC714814
 Description:similar to COP9 (constitutive photomorphogenic) homolog, subunit 2
 Position: 
UniGeneMmu.2891 Similar to COP9 (constitutive photomorphogenic) homolog, subunit 2

Mapping InformationHelp
WI-15995 Sequence Map: Chr 7 Map Viewer
  Position: 27449069-27449218 (bp)

   Monodelphis domestica
Name: WI-15995
Polymorphism info:  
Mapping InformationHelp
WI-15995 Sequence Map: Chr 1 Map Viewer
  Position: 179526037-179526186 (bp)
 
WI-15995 Sequence Map: Chr 3 Map Viewer
  Position: 268567789-268567938 (bp)

   Mus musculus
Name: WI-15995
Polymorphism info:  

Cross References Help
Gene GeneID:12848
 Symbol:Cops2
 Description:COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
 Position:2 F1|2 70.0 cM
UniGeneMm.3596 COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thalian...
 Mm.442150 Transcribed locus

Mapping InformationHelp
WI-15995 Sequence Map: Chr 2 Map Viewer
  Position: 125657347-125657491 (bp)
 
WI-15995 Sequence Map: Chr 2|Celera Map Viewer
  Position: 127075825-127075969 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
NM_009939.2 1799 .. 1943 (145 bp)  
 
mRNA (2)
AF071312.1 1773 .. 1917 (145 bp)  
BC023096.1 1768 .. 1912 (145 bp)  
 
Genomic (3)
AL844580.13 123133 .. 123277 (145 bp)  
CH466519.1 86971119 .. 86971263 (145 bp)  
CM000210.1 124075825 .. 124075969 (145 bp)  
 
ESTs (5 of 85)[Show All Hits]
AA277939.1 206 .. 350 (145 bp)  
C85265.1 10 .. 154 (145 bp)  
C85478.1 10 .. 154 (145 bp)  
AA960372.1 5 .. 149 (145 bp)  
AI037489.1 330 .. 474 (145 bp)  
 
Whole Genome Shotgun sequences (2)
CAAA01206279.1 4741 .. 4885 (145 bp)  
AAHY01020415.1 11600 .. 11744 (145 bp)  
 

   Ornithorhynchus anatinus
Name: WI-15995
Polymorphism info:  
Mapping InformationHelp
WI-15995 Sequence Map: Chr Un|NW_001722034.1 Map Viewer
  Position: 10805-10970 (bp)

   Oryctolagus cuniculus
 
Polymorphism info:  

Cross References Help
UniGeneOcu.1576 Transcribed locus
 Ocu.6664 Transcribed locus, strongly similar to NP_001026767.1 COP9 constitutive phot...


   Ovis aries
 
Polymorphism info:  

Cross References Help
UniGeneOar.13942 Transcribed locus
 Oar.6213 Transcribed locus, strongly similar to NP_001026767.1 COP9 constitutive phot...


Electronic PCR results Help
ESTs (3)
EE752006.1 271 .. 420 (150 bp)  
EE857089.1 426 .. 575 (150 bp)  
FE032738.1 31 .. 180 (150 bp)  
 

   Pan troglodytes
Name: WI-15995
Polymorphism info:  

Cross References Help
Gene GeneID:453417
 Symbol:COPS2
 Description:COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)
 Position: 

Mapping InformationHelp
WI-15995 Sequence Map: Chr 15 Map Viewer
  Position: 46376317-46376466 (bp)

Electronic PCR results Help
RefSeq mRNA (2)
XM_510388.2 1850 .. 1999 (150 bp)  
XM_001166766.1 1880 .. 2029 (150 bp)  
 
Genomic (1)
CM000329.1 46376317 .. 46376466 (150 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01019783.1 5523 .. 5672 (150 bp)  
AACZ02154837.1 7222 .. 7371 (150 bp)  
 

   Rattus norvegicus
Name: WI-15995
Polymorphism info:  

Cross References Help
Gene GeneID:261736
 Symbol:Cops2
 Description:COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)
 Position:3q36
UniGeneRn.11556 COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thalian...

Mapping InformationHelp
WI-15995 Sequence Map: Chr 3|Celera Map Viewer
  Position: 111940311-111940455 (bp)
 
WI-15995 Sequence Map: Chr 3 Map Viewer
  Position: 113142053-113142197 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
NM_153297.1 1906 .. 2049 (144 bp)  
 
mRNA (2)
AB081072.1 1906 .. 2049 (144 bp)  
BC061864.1 1696 .. 1840 (145 bp)  
 
Genomic (3)
CM000074.1 113142053 .. 113142197 (145 bp)  
CH473949.1 68704187 .. 68704331 (145 bp)  
CM000233.2 111940311 .. 111940455 (145 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (1)
AC105523.5 190262 .. 190406 (145 bp)  
 
ESTs (5 of 19)[Show All Hits]
AA148332.1 12 .. 156 (145 bp)  
AI385264.1 22 .. 166 (145 bp)  
AW520778.1 29 .. 173 (145 bp)  
AW521892.1 30 .. 174 (145 bp)  
BG379986.1 21 .. 165 (145 bp)  
 
Whole Genome Shotgun sequences (2)
AABR03025017.1 41055 .. 41199 (145 bp)  
AAHX01024871.1 2880 .. 3024 (145 bp)  
 

   Sus scrofa
 
Polymorphism info:  

Cross References Help
Gene GeneID:100125956
 Symbol:COPS2
 Description:COP9 constitutive photomorphogenic homolog subunit 2
 Position: 
UniGeneSsc.13757 COP9 constitutive photomorphogenic homolog subunit 2


Electronic PCR results Help
ESTs (5 of 17)[Show All Hits]
CO987575.1 12 .. 161 (150 bp)  
DN124753.1 514 .. 663 (150 bp)  
DN125115.1 17 .. 166 (150 bp)  
DB806309.1 42 .. 191 (150 bp)  
EV869345.1 325 .. 472 (148 bp)  
 

   Taeniopygia guttata
 
Polymorphism info:  

Cross References Help
UniGeneTgu.2684 Transcribed locus, strongly similar to NP_001026767.1 COP9 constitutive phot...


   Xenopus tropicalis
 
Polymorphism info:  

Cross References Help
UniGeneStr.24008 MGC97656 protein

 

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