Xylella fastidiosa 9a5c

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[178039-178138 (1-100)] 178139-178238 (101-200) 178239-178338 (201-300) 178339-178438 (301-400) 178439-178538 (401-500)
178539-178638 (501-600) 178639-178738 (601-700) 178739-178838 (701-800) 178839-178938 (801-900) 178939-179038 (901-1000)
179039-179138 (1001-1100) 179139-179238 (1101-1200) 179239-179338 (1201-1300) 179339-179438 (1301-1400) 179439-179538 (1401-1500)
179539-179638 (1501-1600) 179639-179738 (1601-1700) 179739-179838 (1701-1800) 179839-179938 (1801-1900) 179939-180038 (1901-2000)
180039-180138 (2001-2100) 180139-180238 (2101-2200) 180239-180338 (2201-2300) 180339-180438 (2301-2400) 180439-180538 (2401-2500)
180539-180638 (2501-2600) 180639-180738 (2601-2700) 180739-180804 (2701-2766)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
178039 dnaA hypothetical XF0001 chromosomal replication initiation protein
binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself
genbank 15836606 NP_297294.1 439 143 1462
178040 hypothetical XF0002 DNA polymerase III subunit beta
binds the polymerase to DNA and acts as a sliding clamp
genbank 15836607 NP_297295.1 366 1759 2859
178041 hypothetical XF0003 recombination protein F
Required for DNA replication; binds preferentially to single-stranded, linear DNA
genbank 15836608 NP_297296.1 364 3161 4255
178042 hypothetical XF0004 hypothetical protein genbank 15836609 NP_297297.1 88 4500 4766
178043 hypothetical XF0005 DNA gyrase subunit B
negatively supercoils closed circular double-stranded DNA
genbank 15836610 NP_297298.1 814 4763 7207
178044 hypothetical XF0006 hypothetical protein
similar to GI|2384693 (percent identity: 33 %/query alignment coverage: 85.0 %/subject alignment coverage: 54.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836611 NP_297299.1 306 8042 8962
178045 hypothetical XF0007 hypothetical protein genbank 15836612 NP_297300.1 397 9066 10259
178046 hypothetical XF0008 hypothetical protein genbank 15836613 NP_297301.1 31 10299 10394
178047 hypothetical XF0009 TonB protein
similar to SP|O34261 (percent identity: 72 %/query alignment coverage: 100.5 %/subject alignment coverage: 99.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836614 NP_297302.1 221 10703 11368
178048 hypothetical XF0010 biopolymer transport ExbB protein
similar to SP|O34260 (percent identity: 81 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836615 NP_297303.1 254 11464 12228
178049 hypothetical XF0011 biopolymer transport ExbD1 protein
similar to SP|O34259 (percent identity: 78 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836616 NP_297304.1 140 12285 12707
178050 hypothetical XF0012 biopolymer transport ExbD2 protein
similar to SP|O34258 (percent identity: 82 %/query alignment coverage: 98.5 %/subject alignment coverage: 98.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836617 NP_297305.1 136 12711 13121
178051 hypothetical XF0013 hypothetical protein genbank 15836618 NP_297306.1 51 13199 13354
178052 hypothetical XF0014 hypothetical protein genbank 15836619 NP_297307.1 38 13513 13629
178053 hypothetical XF0015 dipeptidyl-peptidase
similar to GI|2120585 (percent identity: 28 %/query alignment coverage: 54.5 %/subject alignment coverage: 60.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836620 NP_297308.1 795 13839 16226
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
178054 hypothetical XF0016 hypothetical protein genbank 15836621 NP_297309.1 180 16281 16823
178055 hypothetical XF0017 coproporphyrinogen III oxidase
catalyzes the formation of protoporphyrinogen IX from coproporphyrinogne
genbank 77747481 NP_297310.2 305 17042 17959
178056 hypothetical XF0018 hypothetical protein genbank 15836623 NP_297311.1 70 18470 18682
178057 hypothetical XF0019 hypothetical protein genbank 15836624 NP_297312.1 50 18746 18898
178058 hypothetical XF0020 hypothetical protein genbank 15836625 NP_297313.1 52 19083 19241
178059 hypothetical XF0021 hypothetical protein genbank 15836626 NP_297314.1 98 19395 19691
178060 hypothetical XF0022 hypothetical protein genbank 15836627 NP_297315.1 75 20230 20457
178061 hypothetical XF0023 hypothetical protein genbank 15836628 NP_297316.1 31 20458 20553
178062 hypothetical XF0024 hypothetical protein genbank 15836629 NP_297317.1 53 20654 20815
178063 hypothetical XF0025 hypothetical protein genbank 15836630 NP_297318.1 84 20982 21236
178064 hypothetical XF0026 3-deoxy-7-phosphoheptulonate synthase
catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
genbank 77747482 NP_297319.2 364 21732 22826
178065 hypothetical XF0027 hypothetical protein genbank 15836632 NP_297320.1 62 22847 23035
178066 hypothetical XF0028 pre-pilin like leader sequence
similar to GI|1161220 (percent identity: 37 %/query alignment coverage: 46.0 %/subject alignment coverage: 50.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836633 NP_297321.1 187 23999 24562
178067 hypothetical XF0029 pre-pilin leader sequence
similar to GI|643582 (percent identity: 33 %/query alignment coverage: 35.4 %/subject alignment coverage: 30.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836634 NP_297322.1 158 24572 25048
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
178068 hypothetical XF0030 hypothetical protein genbank 15836635 NP_297323.1 316 25045 25995
178069 hypothetical XF0031 PilX protein
similar to GI|1246301 (percent identity: 28 %/query alignment coverage: 61.5 %/subject alignment coverage: 69.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836636 NP_297324.1 195 25992 26579
178070 hypothetical XF0032 PilY1 gene product
similar to GI|1246302 (percent identity: 32 %/query alignment coverage: 51.7 %/subject alignment coverage: 54.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836637 NP_297325.1 1230 26603 30295
178071 hypothetical XF0033 PilE protein
similar to GI|2120639 (percent identity: 37 %/query alignment coverage: 98.6 %/subject alignment coverage: 97.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836638 NP_297326.1 139 30298 30717
178072 hypothetical XF0034 orotidine 5'-phosphate decarboxylase
OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide
genbank 15836639 NP_297327.1 244 31159 31893
178073 hypothetical XF0035 hypothetical protein genbank 15836640 NP_297328.1 44 32677 32811
178074 hypothetical XF0036 aspartate aminotransferase
catalyzes the formation of L-glutamate and oxaloacetate from L-aspartate and 2-oxoglutarate
genbank 15836641 NP_297329.1 400 33018 34220
178075 hypothetical XF0037 hypothetical protein genbank 15836642 NP_297330.1 61 34249 34434
178076 hypothetical XF0038 hypothetical protein genbank 15836643 NP_297331.1 51 34755 34910
178077 hypothetical XF0039 large-conductance mechanosensitive channel
similar to SP|P23867 (percent identity: 52 %/query alignment coverage: 101.5 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836644 NP_297332.1 134 35095 35499
178078 hypothetical XF0040 hypothetical protein genbank 15836645 NP_297333.1 117 35823 36176
178079 hypothetical XF0041 hypothetical protein genbank 15836646 NP_297334.1 86 36199 36459
178080 hypothetical XF0042 hypothetical protein
similar to GI|4377279 (percent identity: 29 %/query alignment coverage: 102.6 %/subject alignment coverage: 95.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836647 NP_297335.1 420 36474 37736
178081 hypothetical XF0043 hypothetical protein
similar to SP|P31777 (percent identity: 39 %/query alignment coverage: 99.0 %/subject alignment coverage: 103.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836648 NP_297336.1 293 37919 38800
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
178082 hypothetical XF0044 hypothetical protein genbank 15836649 NP_297337.1 179 39398 39937
178083 hypothetical XF0045 transcription-repair coupling factor
similar to SP|P30958 (percent identity: 49 %/query alignment coverage: 100.0 %/subject alignment coverage: 103.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836650 NP_297338.1 1193 40005 43586
178084 hypothetical XF0046 hypothetical protein genbank 15836651 NP_297339.1 31 43591 43686
178085 hypothetical XF0047 3-dehydroquinate dehydratase
catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
genbank 77747483 NP_297340.2 148 44209 44655
178086 hypothetical XF0048 acetyl-CoA carboxylase
Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism
genbank 15836653 NP_297341.1 161 44718 45203
178087 hypothetical XF0049 acetyl-CoA carboxylase
Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism
genbank 15836654 NP_297342.1 469 45219 46628
178088 hypothetical XF0050 DNA helicase II
similar to SP|P03018 (percent identity: 56 %/query alignment coverage: 100.1 %/subject alignment coverage: 101.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836655 NP_297343.1 728 46805 48991
178089 hypothetical XF0051 hypothetical protein genbank 15836656 NP_297344.1 121 49381 49746
178090 hypothetical XF0052 hypothetical protein genbank 15836657 NP_297345.1 61 50226 50411
178091 hypothetical XF0053 flavohemoprotein
similar to SP|P39662 (percent identity: 40 %/query alignment coverage: 99.5 %/subject alignment coverage: 98.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836658 NP_297346.1 397 50551 51744
178092 hypothetical XF0054 hypothetical protein genbank 15836659 NP_297347.1 122 51758 52126
178093 hypothetical XF0055 hypothetical protein genbank 15836660 NP_297348.1 35 52212 52319
178094 hypothetical XF0056 hypothetical protein genbank 15836661 NP_297349.1 57 52453 52626
178095 hypothetical XF0057 hypothetical protein genbank 15836662 NP_297350.1 36 52710 52820
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
178096 hypothetical XF0058 hypothetical protein genbank 15836663 NP_297351.1 40 53457 53579
178097 hypothetical XF0059 hypothetical protein genbank 15836664 NP_297352.1 103 53596 53907
178098 hypothetical XF0060 pyridoxal phosphate biosynthetic protein
Involved in the de novo synthesis of pyridoxine (Vitamin B6)
genbank 15836665 NP_297353.1 260 53904 54686
178099 hypothetical XF0061 transcriptional repressor
similar to SP|P07674 (percent identity: 28 %/query alignment coverage: 64.9 %/subject alignment coverage: 65.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836666 NP_297354.1 359 55178 56257
178100 hypothetical XF0062 hypothetical protein genbank 15836667 NP_297355.1 108 56232 56558
178101 hypothetical XF0063 competence protein F
similar to GI|5921548 (percent identity: 37 %/query alignment coverage: 93.4 %/subject alignment coverage: 95.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836668 NP_297356.1 241 57328 58053
178102 hypothetical XF0064 biotin synthase
similar to SP|P36569 (percent identity: 60 %/query alignment coverage: 94.4 %/subject alignment coverage: 93.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 66
genbank 15836669 NP_297357.1 341 58103 59128
178103 hypothetical XF0065 hypothetical protein genbank 15836670 NP_297358.1 33 59182 59283
178104 hypothetical XF0066 hypothetical protein
similar to SP|O34731 (percent identity: 33 %/query alignment coverage: 63.3 %/subject alignment coverage: 96.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836671 NP_297359.1 395 59387 60574
178105 hypothetical XF0067 hypothetical protein genbank 15836672 NP_297360.1 79 61039 61278
178106 hypothetical XF0068 4-hydroxybenzoate octaprenyltransferase
catalyzes the formation of 3-octaprenyl-4-hydroxybenzoate from 4-hydroxybenzoate and trans octaprenyl diphosphat
genbank 15836673 NP_297361.1 333 61395 62396
178107 hypothetical XF0069 hypothetical protein genbank 15836674 NP_297362.1 130 62418 62810
178108 hypothetical XF0070 hypothetical protein genbank 15836675 NP_297363.1 52 64213 64371
178109 hypothetical XF0071 formamidopyrimidine-DNA glycosylase
Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
genbank 15836676 NP_297364.1 271 71808 72623
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
178110 hypothetical XF0072 hypothetical protein
similar to GI|1788964 (percent identity: 28 %/query alignment coverage: 85.1 %/subject alignment coverage: 83.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836677 NP_297365.1 282 72755 73603
178111 hypothetical XF0073 signal recognition particle protein
similar to SP|P07019 (percent identity: 63 %/query alignment coverage: 97.9 %/subject alignment coverage: 93.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836678 NP_297366.1 434 73755 75059
178112 hypothetical XF0074 hypothetical protein
hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -24
genbank 15836679 NP_297367.1 97 75334 75627
178113 hypothetical XF0075 hypothetical protein genbank 15836680 NP_297368.1 267 75779 76582
178114 hypothetical XF0076 hypothetical protein genbank 15836681 NP_297369.1 55 76738 76905
178115 hypothetical XF0077 fimbrial adhesin precursor
similar to SP|P21648 (percent identity: 30 %/query alignment coverage: 89.9 %/subject alignment coverage: 99.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 77747484 NP_297370.2 323 76892 77863
178116 hypothetical XF0078 fimbrial adhesin precursor
similar to SP|P21648 (percent identity: 32 %/query alignment coverage: 88.1 %/subject alignment coverage: 97.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 77747485 NP_297371.2 326 78097 79077
178117 hypothetical XF0079 hypothetical protein genbank 15836684 NP_297372.1 78 79229 79465
178118 hypothetical XF0080 fimbrial adhesin precursor
similar to SP|P04128 (percent identity: 29 %/query alignment coverage: 52.2 %/subject alignment coverage: 91.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 183
genbank 15836685 NP_297373.1 320 79744 80706
178119 hypothetical XF0081 outer membrane usher protein precursor
similar to SP|P30130 (percent identity: 36 %/query alignment coverage: 95.7 %/subject alignment coverage: 98.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836686 NP_297374.1 901 80781 83486
178120 hypothetical XF0082 chaperone protein precursor
similar to SP|P33128 (percent identity: 40 %/query alignment coverage: 93.2 %/subject alignment coverage: 100.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836687 NP_297375.1 266 83513 84313
178121 hypothetical XF0083 fimbrial subunit precursor
similar to SP|P11312 (percent identity: 42 %/query alignment coverage: 99.5 %/subject alignment coverage: 101.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836688 NP_297376.1 184 84385 84939
178122 hypothetical XF0084 hypothetical protein genbank 15836689 NP_297377.1 31 85353 85448
178123 hypothetical XF0085 hypothetical protein genbank 15836690 NP_297378.1 54 85611 85775
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
178124 hypothetical XF0086 hypothetical protein
similar to SP|P41053 (percent identity: 52 %/query alignment coverage: 94.4 %/subject alignment coverage: 92.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836691 NP_297379.1 162 86421 86909
178125 hypothetical XF0087 alpha-ketoglutarate permease symporter
similar to SP|P17448 (percent identity: 64 %/query alignment coverage: 98.2 %/subject alignment coverage: 98.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836692 NP_297380.1 435 86989 88296
178126 hypothetical XF0088 GTP-binding protein
similar to SP|P25519 (percent identity: 54 %/query alignment coverage: 94.0 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836693 NP_297381.1 450 88345 89697
178127 hypothetical XF0089 RNA-binding protein Hfq
stimulates the elongation of poly(A) tails
genbank 15836694 NP_297382.1 92 89712 89990
178128 hypothetical XF0090 tRNA delta(2)-isopentenylpyrophosphate transferase
Catalyzes the first step in the biosynthesis of 2-methylthio-N6-(delta(2)-isopentenyl) adenosine
genbank 15836695 NP_297383.1 317 90094 91047
178129 hypothetical XF0091 dihydropteroate synthase
similar to GI|606115 (percent identity: 52 %/query alignment coverage: 93.6 %/subject alignment coverage: 93.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836696 NP_297384.1 298 91047 91943
178130 hypothetical XF0092 hypothetical protein genbank 15836697 NP_297385.1 68 92044 92250
178131 hypothetical XF0093 cell division protein
similar to SP|P28691 (percent identity: 64 %/query alignment coverage: 98.3 %/subject alignment coverage: 98.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836698 NP_297386.1 645 92252 94189
178132 hypothetical XF0094 cell division protein
similar to SP|P28692 (percent identity: 52 %/query alignment coverage: 94.4 %/subject alignment coverage: 96.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836699 NP_297387.1 213 94237 94878
178133 hypothetical XF0095 hypothetical protein
similar to SP|P71376 (percent identity: 41 %/query alignment coverage: 95.0 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836700 NP_297388.1 101 94948 95253
178134 hypothetical XF0096 hypothetical protein
similar to GI|2228685 (percent identity: 34 %/query alignment coverage: 81.7 %/subject alignment coverage: 88.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15836701 NP_297389.1 126 95272 95652
178135 hypothetical XF0097 hypothetical protein genbank 15836702 NP_297390.1 54 95805 95969
178136 hypothetical XF0098 hypothetical protein genbank 15836703 NP_297391.1 64 96040 96234
178137 hypothetical XF0099 dihydroxy-acid dehydratase
atalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
genbank 15836704 NP_297392.1 610 96231 98063
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
178138 hypothetical XF0100 hypothetical protein genbank 15836705 NP_297393.1 132 98328 98726


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