18 hits to 9 species
82 letters
383 = BS_fer (82) =
330 = BH1605 (82) =
310 = BH2357 (82) =
205 = BH0209 (82) =
82 = PAB7439 (67) =
77 = AF0166 (60) =
71 = VNG2370C (82) =
71 = Rv3503c (63) =
68 = L176167 (67) =
66 = TM0927 (60) =
58 AF1566 (263)
57 _ mlr7435 (718) COG0751
57 mll1090 (1072)
57 sll0614 (132)
56 _ CC2488 (247) COG3751
56 mll6891 (349)
56 _ mlr5448_2 (366) COG1013
56 = MTH1819 (76) =
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BS_fer
(82 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
BS_fer 152 1e-37
BH1605 131 1e-31
BH2357 124 3e-29
BH0209 84 4e-17
PAB7439 36 0.008
AF0166 34 0.031
VNG2370C 32 0.15
Rv3503c 32 0.15
L176167 31 0.34
TM0927 30 0.59
AF1566 27 5.0
mlr7435 27 6.5
mll1090 27 6.5
sll0614 27 6.5
CC2488 26 8.5
mll6891 26 8.5
mlr5448_2 26 8.5
MTH1819 26 8.5
# >BS_fer
# Length = 82
#
# Score = 152 bits (383), Expect = 1e-37
# Identities = 73/82 (89%), Positives = 73/82 (89%)
#
# Query: 1 MAKYTIVDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFE 60
# MAKYTIVDKDTCI PDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFE
# Sbjct: 1 MAKYTIVDKDTCIACGACGAAAPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFE 60
#
# Query: 61 GCPTDSIKVADEPFEGDPLKFE 82
# GCPTDSIKVADEPFEGDPLKFE
# Sbjct: 61 GCPTDSIKVADEPFEGDPLKFE 82
#
#
# >BH1605
# Length = 82
#
# Score = 131 bits (330), Expect = 1e-31
# Identities = 63/82 (76%), Positives = 67/82 (80%)
#
# Query: 1 MAKYTIVDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFE 60
# M KYTIVDKDTCI PDIYDYDDEGIAFVTLD+N+G VEVP+ L EDMIDA E
# Sbjct: 1 MPKYTIVDKDTCIACGACGAAAPDIYDYDDEGIAFVTLDDNEGTVEVPDELLEDMIDAQE 60
#
# Query: 61 GCPTDSIKVADEPFEGDPLKFE 82
# GCPTDSIKVADEPF+GD LKFE
# Sbjct: 61 GCPTDSIKVADEPFDGDALKFE 82
#
#
# >BH2357
# Length = 82
#
# Score = 124 bits (310), Expect = 3e-29
# Identities = 58/82 (70%), Positives = 65/82 (78%)
#
# Query: 1 MAKYTIVDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFE 60
# MAKYTIVDK+TCI PD+YDYDDEG+A+V LD+N+GV EVPE L EDM DA E
# Sbjct: 1 MAKYTIVDKETCIACGACGAAAPDVYDYDDEGLAYVILDDNEGVAEVPEDLIEDMEDALE 60
#
# Query: 61 GCPTDSIKVADEPFEGDPLKFE 82
# GCPTDSI+VADEPFEGD KFE
# Sbjct: 61 GCPTDSIRVADEPFEGDANKFE 82
#
#
# >BH0209
# Length = 82
#
# Score = 83.6 bits (205), Expect = 4e-17
# Identities = 39/77 (50%), Positives = 49/77 (62%)
#
# Query: 1 MAKYTIVDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFE 60
# M +TIVD+DTCI PDI+DYDDEG+AF D N+G + L D+ DA E
# Sbjct: 1 MPIFTIVDQDTCIACGACGASAPDIFDYDDEGLAFYIADHNQGNTPIDPSLLNDLEDAVE 60
#
# Query: 61 GCPTDSIKVADEPFEGD 77
# GCPT SIK+A+E F G+
# Sbjct: 61 GCPTGSIKLAEEAFNGE 77
#
#
# >PAB7439
# Length = 67
#
# Score = 36.2 bits (82), Expect = 0.008
# Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 5/71 (7%)
#
# Query: 1 MAKYTIVDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFE 60
# MA VD+DTCI PD+++ +DEG A + K + E L +A E
# Sbjct: 1 MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKA-----QPKVEIIEDEELYNCAKEAME 55
#
# Query: 61 GCPTDSIKVAD 71
# CP +I + +
# Sbjct: 56 SCPVSAITIEE 66
#
#
# >AF0166
# Length = 60
#
# Score = 34.3 bits (77), Expect = 0.031
# Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
#
# Query: 6 IVDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFEGCPTD 65
# +VD+D CI P+++ +DEGI+ V G + E EE A E CP
# Sbjct: 4 VVDRDLCIGCGTCEEICPEVFRLNDEGISEVI-----GSCDSAECCEE----AMESCPAS 54
#
# Query: 66 SIKVAD 71
# +I + D
# Sbjct: 55 AISLED 60
#
#
# >VNG2370C
# Length = 82
#
# Score = 32.0 bits (71), Expect = 0.15
# Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 5/73 (6%)
#
# Query: 8 DKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLD-----ENKGVVEVPEVLEEDMIDAFEGC 62
# D+DTCI D +D D + V +D ++ V+VP+ E D A C
# Sbjct: 6 DRDTCIGMFQCVAEWGDGFDEDTDAGKAVLVDGDAIGDDVFAVDVPDGDELDAKFAARTC 65
#
# Query: 63 PTDSIKVADEPFE 75
# P D+I V D+ E
# Sbjct: 66 PVDAITVYDDDGE 78
#
#
# >Rv3503c
# Length = 63
#
# Score = 32.0 bits (71), Expect = 0.15
# Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 6/58 (10%)
#
# Query: 6 IVDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFEGCP 63
# IVD+D C PDI+D DDE A V D +P E+ A CP
# Sbjct: 4 IVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTD------PIPVDQEDLAEQAIAECP 55
#
#
# >L176167
# Length = 67
#
# Score = 30.8 bits (68), Expect = 0.34
# Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
#
# Query: 10 DTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEED--MIDAFEGCPTDSI 67
# D CI P+++DY D GI E EV + +D ++ A + CPT ++
# Sbjct: 8 DKCIACGLCNLHAPEVFDYHDNGIVKFYDTE-----EVQKEFSDDNSLLLAIKSCPTGAL 62
#
# Query: 68 KV 69
# K+
# Sbjct: 63 KI 64
#
#
# >TM0927
# Length = 60
#
# Score = 30.0 bits (66), Expect = 0.59
# Identities = 20/65 (30%), Positives = 26/65 (39%), Gaps = 9/65 (13%)
#
# Query: 7 VDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFEGCPTDS 66
# VD D CI PD++ D+G K V PE DA + CPT +
# Sbjct: 5 VDADACIGCGVCENLCPDVFQLGDDG---------KAKVLQPETDLPCAKDAADSCPTGA 55
#
# Query: 67 IKVAD 71
# I V +
# Sbjct: 56 ISVEE 60
#
#
# >AF1566
# Length = 263
#
# Score = 26.9 bits (58), Expect = 5.0
# Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
#
# Query: 39 DENKG--VVEVPEVLEEDMIDAFEGCPTDSIKV 69
# D+N+ + E EVL+ D +++FE P D K+
# Sbjct: 224 DDNRARIIAENSEVLDNDYLNSFERVPVDGSKI 256
#
#
# >mlr7435
# Length = 718
#
# Score = 26.6 bits (57), Expect = 6.5
# Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 4/41 (9%)
#
# Query: 29 DDEGIAFVTLDENKGVVEVPEVLEEDMIDAFEGCPTDSIKV 69
# +DEG+ L+E G+VE P VL + +AF P + I++
# Sbjct: 245 EDEGL----LEEVSGLVEWPVVLMGEFEEAFLAIPAEVIRL 281
#
#
# >mll1090
# Length = 1072
#
# Score = 26.6 bits (57), Expect = 6.5
# Identities = 18/54 (33%), Positives = 20/54 (36%), Gaps = 9/54 (16%)
#
# Query: 23 PDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFEGCPTDSIKVADEPFEG 76
# P YDD F +L VEVP V P S ADE F+G
# Sbjct: 539 PAASGYDDLDAEFASLLTEMNTVEVPPV---------PAAPASSAAYADETFDG 583
#
#
# >sll0614
# Length = 132
#
# Score = 26.6 bits (57), Expect = 6.5
# Identities = 13/34 (38%), Positives = 20/34 (58%)
#
# Query: 45 VEVPEVLEEDMIDAFEGCPTDSIKVADEPFEGDP 78
# +E+ EV + +I FE PTD +A+E +E P
# Sbjct: 37 IEIGEVSFDSLIVRFENLPTDLKALAEEIYEFCP 70
#
#
# >CC2488
# Length = 247
#
# Score = 26.2 bits (56), Expect = 8.5
# Identities = 11/28 (39%), Positives = 15/28 (53%)
#
# Query: 34 AFVTLDENKGVVEVPEVLEEDMIDAFEG 61
# AF GVV +PEV E +++D G
# Sbjct: 17 AFAPAYARDGVVRIPEVFEPEVVDRLAG 44
#
#
# >mll6891
# Length = 349
#
# Score = 26.2 bits (56), Expect = 8.5
# Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
#
# Query: 24 DIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMIDAFEGCPTDSIKVADEPFEGD 77
# D YD DE +DE G E E E D D FE D + DE GD
# Sbjct: 22 DSYDEFDE------MDEGDGFDEADEGDEFDEGDEFEASGFDEMDAGDEFDAGD 69
#
#
# >mlr5448_2
# Length = 366
#
# Score = 26.2 bits (56), Expect = 8.5
# Identities = 9/19 (47%), Positives = 13/19 (68%)
#
# Query: 61 GCPTDSIKVADEPFEGDPL 79
# GCP+ S+K D+P DP+
# Sbjct: 281 GCPSLSVKSLDDPLRDDPV 299
#
#
# >MTH1819
# Length = 76
#
# Score = 26.2 bits (56), Expect = 8.5
# Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
#
# Query: 7 VDKDTCIXXXXXXXXXPDIYDYDDEGIAFVTLDENKGVVEVPEVLEEDMID------AFE 60
# +D+ CI PD++++ D+GI+ + KG VE+ ++ ++ D A
# Sbjct: 6 LDRTMCISCGNCIDSCPDLFEFADDGISSI-----KG-VEISDIQALELEDPSCSEKAAG 59
#
# Query: 61 GCPTDSIKV 69
# CP IK+
# Sbjct: 60 NCPVMCIKL 68
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.315 0.142 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,237,960
Number of Sequences: 108091
Number of extensions: 188837
Number of successful extensions: 327
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 18
length of query: 82
length of database: 33,061,072
effective HSP length: 58
effective length of query: 24
effective length of database: 26,791,794
effective search space: 643003056
effective search space used: 643003056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
S2: 56 (26.2 bits)