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Fusobacterium nucleatum Search Results

Record: 1 of 1  
MiniMap IGR817 IGR819 IGR820 IGR818 IGR815 IGR816 FN0390 tcmP, - FN0388 FN0389 FN0386 FN0391 Fomp, - FN0387 FN0390 tcmP, - FN0388 FN0389 FN0386 FN0391 Fomp, - FN0387 Type: tandem, Name: FN-TR-61 - 61 Type: tandem, Name: FN-TR-62 - 62 Type: tandem, Name: FN-TR-62 - 62 FN0390 tcmP, - FN0388 FN0389 FN0386 FN0391 Fomp, - FN0387


Gene ID:FN0387

DNA Molecule Name:
1  

GenBank ID:
19713859

Gene Name:
Fomp  

Definition:
probable outer membrane protein, 238 kDa (Fomp)

Cellular Location:
Outer membrane, Extracellular [Evidence]

Gene Start:
1021482

Gene Stop:
1026656

Gene Length:
5175

Molecular Weight*:
183970

pI*:
10.10

Net Charge*:
37.00

EC:
 

Functional Class:
Cell envelope; Membranes, lipoproteins, and porins  

Gene Ontology:

Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
This sequence corresponds to 19703729, 19705198, 19705337, 19705348, 19703599, 19704886 and 19704858 in GenBank. It also corresponds to RFNV02153, a predicted Fomp in the vincentii subspecies.

Nearest neighbor in GenBank is 26248737, a yapH homolog in E.coli.


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|19703729|ref|NP_603291.1|  Fusobacterium outer membrane p...  2820   0.0  
 gi|34762230|ref|ZP_00143236.1|  FUSOBACTERIUM OUTER MEMBRANE...  2747   0.0  
 gi|19705337|ref|NP_602832.1|  Fusobacterium outer membrane p...   736   0.0  
 gi|148322782|gb|EDK88032.1|  outer membrane protein [Fusobac...   735   0.0  
 gi|19705198|ref|NP_602692.1|  Fusobacterium outer membrane p...   735   0.0  
 gi|34763560|ref|ZP_00144496.1|  FUSOBACTERIUM OUTER MEMBRANE...   735   0.0  
 gi|19704886|ref|NP_602381.1|  Fusobacterium outer membrane p...   716   0.0  
 gi|34762372|ref|ZP_00143374.1|  FUSOBACTERIUM OUTER MEMBRANE...   713   0.0  
 gi|34763479|ref|ZP_00144423.1|  FUSOBACTERIUM OUTER MEMBRANE...   709   0.0  
 gi|66268805|gb|AAY42947.1|  apoptosis inducing membrane prot...   703   0.0


InterPro Summary:  InterProScan

InterPro
IPR005546
Domain
Autotransporter beta-domain
PF03797 [1442-1715]T 8.3e-40 PF03797 Autotransporter Autotransporter
PS51208 [1430-1718]T 18.014 PS51208 AUTOTRANSPORTER AUTOTRANSPORTER


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 167-920 are 20% similar to a (PROTEOME YCBB COMPLETE PLASMID) protein domain (PD327671 which is seen in Q9JMS5_ECOLI.

Residues 438-1103 are 21% similar to a (PROTEOME LIPOPROTEIN COMPLETE POSSIBLE) protein domain (PD327278 which is seen in Q9PHN8_CAMJE.


Paralogs:  Local Blast Search
FN0387 is paralogously related to FN1893 (predicted outer membrane protein, 251 kDa (Fomp)) (0.0), FN1554 (predicted outer membrane protein) (0.0), FN2058 (predicted outer membrane protein, 188 kDa) (0.0), FN0254 (outer membrane protein) (0.0), FN2047 (predicted outer membrane protein, 257 kDa (Fomp)) (0.0), FN1449 (outer membrane protein) (0.0), FN1526 (predicted outer membrane protein, 362 kDa (Fomp)) (1e-82), FN0291 (hemolysin/hemagglutinin-like protein) (1e-14), FN1817 (hemolysin/hemagglutinin-like protein) (2e-13), FN0132 (hemolysin) (6e-12), FN1381 (hypothetical protein) (8e-07), FN1950 (serine protease) (1e-06), FN1905 (Fusobacterium-specific protein, predicted 168 kDa outer membrane protein) (3e-06), FN0735 (outer membrane protein) (4e-06) and FN1426 (serine protease) (1e-04).


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database.

 Top PDB Hits:
pdb|1TYV|1TYV STRUCTURE OF TAILSPIKE-PROTEIN 377.0 0e+00
pdb|1TYW|1TYW 372.0 0e+00
pdb|1QA3|1QA3-A TAILSPIKE PROTEIN, MUTANT A334I 371.0 0e+00
pdb|1QA2|1QA2-A TAILSPIKE PROTEIN, MUTANT A334V 370.0 0e+00
pdb|1CLW|1CLW-A TAILSPIKE PROTEIN FROM PHAGE P22, V331A MUTANT 370.0 0e+00
pdb|1TSP|1TSP MOL_ID: 1; MOLECULE: TAILSPIKE-PROTEIN; CHAIN: 370.0 0e+00
pdb|1QA1|1QA1-A TAILSPIKE PROTEIN, MUTANT V331G 369.0 0e+00
pdb|1QQ1|1QQ1-A TAILSPIKE PROTEIN, MUTANT E359G 369.0 0e+00
pdb|1QRB|1QRB-A PLASTICITY AND STERIC STRAIN IN A PARALLEL 368.0 0e+00
pdb|1QRC|1QRC-A TAILSPIKE PROTEIN, MUTANT W391A 367.0 0e+00

Gene Protein Sequence:
MIDVEYSNDKNHKNHKTINKGTININSKNSVGIDFAKYELGLLQTDVSLG
NINVNGSNNYGFRMAKLFDGETKTYQGADNGSNLTVDGNKYYDNTTITGE
GGKIVVGGKENVGVSISKGVSADKSANPISNIKSLNIEVVGENVVGFLRN
KDFSINNTGNIVLDDTTVQSLTFGNGAKNSTLVRSDNGTIDIKKNLNATK
GSTGNSFSQATSGGRVVNHSILKSTLSHFTGMISYGRGNLRSSTAINKGT
IELTGDSDSNIGMAALNSGEIRNENGTIKVLGKGKNKAAIYTDQTSSATL
NGGNYFISGESSSGIYNQGSTILGDNNKIFASNGAVGIYSSGGTIDGSHA
ANGVDIEVDDGDSEEKGLAVYGENGTDIKLQNSKINVKKGIAGVAAFGAN
TKINLNGATLKYSGSGYAAYATGGGKIDLSNSRIELRGRATGFEMAGSGT
SPITLNSNTRIHVYSNDVTVMNIKDMASLNYSNLNSTAFNSYLQGATVHA
ENGATDYKLAAVDGIGAYNINSSLDKKLAVNPANKNTNDYIFTRLLSVQR
ARMNLKSGNNVRAVLSSSELAAIKEKTVVGLAMNSSKNAVSNTETAINLE
NNTTVTADRTDAGDGAVGLFVNYGTVNVASGATINVEKENNVVNEKAVGI
YAVNGTEVDNKGTINVGGKNSIGIFGIAYRTDNAGNKKIDEFGSNAVGQG
KVNIKNQGTLSLNGEGASGILVKNNKGTAASLGEHKALNTGTINMSGNKA
IGMFAEKGYLKNEGTINITGSQQGIGMYGHLGSILENGTNGKINVADSND
ENKLNIGMFTDDINTKIMNAGKISVGKNSYGIYGKNITTTATSKIKTGDN
GVGIFSSTKDSNTTLDLAPGSEITVGNNNAVGVFSLGNKAAHITSFSKMN
IGNGSFGYVIRSKGSTLNSNYAGETELKQDGTYIYSTDEDGTITNKTKLK
SSGNKNYGIYASGNVKNLADINFATGYGNVGLYSTSNNSNKGITNGEAGS
SGIKPKITVGASKIRDTNGNLLKEKDRLYSIGMAAGYSWTEEDLKKPEAQ
RPKQFIGRIVNYGTISVTGDDGIGMYAVGRGSRAINHGLIDLSGKNSIGM
YLDQGAIGENYGTIRTAPNNTKDGIIGVVALNGSVIKNYGTISISGAGNT
GIYKAQGGNNEGKKPEVSNGATDISSKATADTSKKLGTSQILSPPGATNA
VIKEKGKVLTPDYVDRPTPNAPNVRAGSTILNLKQLQKFNGNSRARASEL
GMYIDTSGIKFTKPIEGLEKLTNLKRINLIFGVEATKYSNNTAIQIGSNI
LEPYNKVIEKLSRSGSGKKWILNSSSLTWMATATQNPSNGTLGNVYMKKI
PYTTFAVKGDTDTYNFLDGLEQRYGVEGLNSREKELFNKLNDIGKGEAQL
FVQAVDEMKGHQYANTQQRVYATGQILDTEFNYLREEWATASKDSNKIKA
FGARGEYKTNTAGVIDYKNYAYGVAYIHENESVKLGKDIGWYTGFVHNTF
RFEDIGKSKEEMLLGKIGMFKSIPFDDDNSLNWTVSGNVFVGRNKMHRKF
LIVDEIFNAKSKYYAYGIGVKNEIGKEFRLSEDFSIRPYGALKLEYGRIS
KIKEKTGEIRLEVKSNDYVSIKPEIGTELKYKYLFTNRKTLTVGLGVAYE
NELGKVANPKNKARVAYTAADWYNLRGEKEDRRGNIKTDLTIGLENTRFG
ATANVGYDTKGHNVRTGL

Gene Nucleotide Sequence:  Sequence Viewer
ATGATTGATGTTGAATATTCAAATGATAAAAATCATAAAAATCATAAAAC
AATAAATAAAGGAACAATAAATATAAACAGTAAAAATAGTGTTGGGATAG
ATTTTGCTAAATATGAGCTAGGCTTATTACAAACAGATGTTAGTCTAGGA
AACATTAATGTAAATGGAAGTAATAACTATGGTTTTAGAATGGCTAAACT
TTTTGATGGGGAAACTAAAACTTATCAAGGTGCTGATAATGGAAGTAATT
TAACAGTTGATGGAAATAAATATTATGATAACACAACTATAACAGGAGAA
GGTGGAAAAATAGTTGTAGGTGGAAAAGAAAATGTTGGAGTTTCAATTTC
CAAAGGAGTTTCTGCTGATAAAAGTGCTAACCCAATCAGTAATATAAAAA
GTTTAAATATAGAAGTAGTTGGAGAAAATGTTGTAGGTTTTTTAAGAAAT
AAAGATTTTTCAATAAATAATACAGGAAATATAGTTTTAGATGACACAAC
AGTACAAAGCTTAACTTTTGGAAATGGTGCAAAAAATAGTACCTTAGTTC
GTAGTGATAATGGGACTATTGATATAAAGAAAAATCTTAATGCAACAAAG
GGTTCTACTGGAAACAGTTTTTCTCAAGCAACTTCTGGTGGTAGAGTAGT
CAATCATTCAATTTTAAAAAGTACATTATCTCATTTTACAGGAATGATTT
CTTATGGAAGAGGTAATCTCCGTTCTTCTACTGCTATAAATAAGGGAACA
ATAGAATTAACAGGAGATTCTGATAGTAATATTGGAATGGCTGCATTAAA
TAGTGGAGAAATAAGAAATGAAAATGGAACTATAAAAGTATTAGGAAAGG
GTAAGAATAAGGCTGCTATCTATACAGACCAAACTTCTTCAGCTACATTA
AATGGAGGAAATTACTTTATTTCAGGGGAATCTTCTTCAGGAATTTATAA
TCAAGGTTCTACTATTTTGGGAGATAATAATAAAATATTTGCTAGTAATG
GAGCAGTAGGAATTTATAGCTCTGGTGGAACGATAGATGGTAGTCATGCA
GCTAATGGAGTTGATATAGAAGTAGATGATGGTGATTCTGAGGAAAAAGG
ATTAGCTGTATATGGAGAAAATGGTACAGATATAAAATTACAAAACTCAA
AAATAAATGTTAAAAAAGGAATAGCTGGAGTTGCTGCATTTGGAGCAAAT
ACTAAAATTAATTTGAATGGAGCCACTTTAAAATATTCAGGTTCTGGATA
TGCTGCCTATGCAACAGGTGGAGGAAAAATTGACTTATCAAATAGTAGAA
TAGAATTAAGAGGAAGAGCCACAGGATTTGAAATGGCTGGAAGTGGAACT
TCACCAATAACATTAAATTCAAATACTAGAATTCATGTTTATTCTAATGA
TGTAACAGTAATGAATATAAAAGATATGGCTTCATTAAATTATTCTAATT
TAAATTCAACAGCATTTAATAGTTATCTTCAAGGAGCAACAGTACATGCT
GAAAATGGTGCAACAGATTATAAATTAGCAGCTGTTGATGGAATAGGAGC
TTATAATATTAATTCTAGTTTAGATAAAAAATTAGCAGTAAATCCTGCAA
ATAAAAATACAAATGACTATATTTTTACAAGATTATTGTCTGTTCAAAGA
GCAAGAATGAATTTAAAATCTGGAAATAATGTTAGAGCTGTCCTTAGCAG
CAGTGAGTTAGCTGCTATAAAAGAAAAAACAGTTGTTGGTTTAGCTATGA
ATTCAAGTAAAAATGCAGTAAGTAATACAGAAACAGCAATAAACCTAGAA
AATAATACAACTGTTACAGCAGATAGAACAGATGCAGGAGATGGAGCAGT
AGGTCTATTTGTAAATTATGGAACAGTTAATGTTGCCAGTGGTGCTACAA
TAAATGTAGAAAAAGAAAATAATGTTGTTAATGAAAAAGCTGTTGGTATT
TATGCTGTAAATGGAACTGAGGTTGATAATAAAGGAACTATAAATGTTGG
TGGAAAAAATTCAATAGGAATTTTCGGAATAGCTTATCGTACTGATAATG
CTGGAAACAAAAAAATAGATGAATTTGGTTCTAATGCAGTAGGACAAGGA
AAGGTAAACATTAAAAATCAAGGTACATTGTCTTTAAATGGTGAAGGAGC
AAGTGGAATCCTTGTAAAAAATAATAAAGGAACAGCAGCTTCATTAGGAG
AACACAAGGCCTTAAATACTGGAACTATAAATATGTCTGGGAATAAAGCT
ATTGGAATGTTTGCTGAAAAAGGATACTTAAAAAATGAAGGAACTATAAA
TATTACAGGTTCACAACAAGGTATTGGAATGTATGGACATTTAGGATCTA
TTTTAGAAAATGGAACAAATGGAAAAATAAATGTTGCAGATTCTAATGAT
GAGAATAAACTTAATATAGGAATGTTTACAGATGATATAAATACAAAAAT
TATGAATGCTGGAAAAATATCAGTTGGAAAAAATTCTTATGGTATTTATG
GTAAAAATATAACAACAACTGCAACTTCAAAAATAAAAACTGGAGATAAT
GGTGTTGGAATTTTTTCAAGCACAAAAGATAGTAATACTACATTAGATTT
AGCTCCAGGTTCTGAAATAACAGTTGGAAATAATAACGCTGTTGGAGTTT
TCTCATTAGGGAATAAAGCAGCTCATATTACAAGTTTTTCAAAAATGAAT
ATTGGAAATGGCTCTTTTGGTTATGTAATAAGAAGTAAGGGAAGTACATT
AAATAGTAACTATGCAGGAGAAACTGAATTGAAGCAAGATGGAACATATA
TATATTCTACTGATGAAGATGGAACTATCACAAATAAAACAAAATTAAAA
TCATCAGGAAATAAAAACTATGGAATATATGCATCTGGAAATGTAAAAAA
TCTAGCTGATATTAATTTTGCTACTGGATATGGAAATGTTGGTTTATATA
GTACAAGTAATAATTCAAATAAAGGGATAACTAATGGTGAAGCTGGTTCA
TCAGGAATTAAACCTAAAATAACAGTAGGTGCTTCAAAAATTAGAGATAC
AAATGGAAATCTTTTAAAAGAAAAAGATAGATTATATTCAATAGGAATGG
CAGCAGGTTATAGCTGGACAGAAGAAGATTTAAAGAAACCAGAAGCACAA
AGACCTAAACAATTTATTGGAAGAATAGTAAACTATGGAACTATCTCTGT
CACTGGTGATGATGGTATAGGAATGTATGCAGTTGGTAGAGGTTCTAGAG
CAATTAATCATGGACTTATTGATTTAAGTGGTAAAAATTCAATAGGAATG
TACTTGGATCAAGGAGCAATAGGTGAAAACTATGGAACTATAAGAACAGC
TCCTAACAATACAAAAGATGGAATTATTGGAGTTGTAGCTCTAAATGGGT
CTGTTATAAAAAATTATGGAACTATTTCTATAAGTGGTGCTGGAAATACA
GGTATCTATAAGGCACAAGGTGGAAACAATGAAGGAAAAAAACCTGAAGT
AAGCAATGGAGCAACAGATATTTCAAGTAAAGCCACAGCAGATACAAGTA
AAAAATTGGGAACTTCTCAAATTTTATCACCACCTGGAGCAACAAATGCA
GTTATAAAAGAAAAAGGTAAAGTATTAACACCTGATTATGTTGATAGACC
AACACCTAATGCACCAAATGTTAGAGCAGGAAGTACAATATTAAATTTAA
AACAACTTCAAAAATTTAATGGAAATTCTAGAGCTAGAGCATCTGAGTTA
GGAATGTATATTGATACTTCAGGAATTAAATTTACAAAACCTATTGAAGG
CTTAGAAAAATTAACTAATTTAAAGAGAATAAACTTGATATTTGGAGTAG
AAGCTACAAAATATTCTAATAATACAGCAATTCAAATTGGAAGTAATATT
CTAGAACCATATAATAAAGTAATTGAAAAACTAAGTCGTTCAGGTTCTGG
TAAAAAGTGGATTCTAAATTCAAGTAGTTTAACATGGATGGCGACAGCAA
CTCAAAATCCAAGCAATGGTACTCTTGGAAATGTTTATATGAAGAAAATT
CCTTATACTACTTTTGCAGTTAAAGGAGATACAGATACATATAATTTCTT
AGATGGTTTAGAACAAAGATATGGTGTTGAAGGATTAAATTCCAGAGAAA
AAGAATTATTTAATAAATTAAATGATATTGGAAAAGGAGAAGCACAATTA
TTTGTTCAAGCAGTTGATGAAATGAAAGGTCATCAATATGCAAATACACA
ACAAAGAGTGTATGCAACTGGTCAGATTTTAGATACAGAATTTAATTATT
TAAGAGAAGAATGGGCAACAGCCTCTAAAGATTCAAATAAAATAAAAGCA
TTTGGAGCTAGAGGAGAATACAAGACAAATACAGCTGGAGTTATTGACTA
TAAAAACTATGCTTATGGAGTGGCTTATATACATGAAAATGAATCAGTTA
AGCTAGGAAAAGATATTGGTTGGTATACAGGTTTTGTTCATAATACATTT
AGGTTTGAAGATATTGGTAAATCAAAAGAAGAAATGCTATTAGGAAAAAT
TGGAATGTTCAAATCAATACCATTTGATGATGATAATAGCCTAAACTGGA
CTGTATCAGGAAATGTATTTGTTGGACGTAATAAAATGCATAGAAAATTT
TTAATAGTTGATGAAATATTTAATGCAAAATCTAAATATTATGCTTATGG
AATAGGTGTAAAAAATGAAATAGGAAAAGAATTTAGATTGAGTGAAGATT
TCTCAATAAGACCATATGGAGCATTAAAACTTGAATATGGAAGAATAAGC
AAGATAAAAGAAAAAACTGGTGAAATAAGATTGGAAGTAAAATCAAATGA
TTATGTTTCAATCAAACCAGAAATTGGAACAGAATTAAAGTATAAATATC
TATTTACAAATAGAAAAACATTAACAGTTGGATTAGGTGTAGCTTATGAA
AATGAGTTAGGAAAAGTAGCAAATCCTAAGAATAAAGCAAGAGTAGCATA
CACAGCAGCAGATTGGTACAATCTTAGAGGAGAAAAAGAAGATAGAAGAG
GTAATATTAAAACTGATTTAACTATCGGATTAGAAAATACGAGATTTGGA
GCAACTGCAAATGTAGGTTATGACACAAAAGGGCATAATGTAAGAACTGG
ATTAGGGCTTAGAGTTATATTCTAA

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