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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs448952          
refSNP ID: rs448952
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:80/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss19338088 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs448952 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss601780SC_JCM|U91326.1_109553fwd/TC/Gccaaagtgctgggattacaggtgtaagccatgcgcccagccctctggttaactgtcttga07/12/0010/10/0380Genomicunknown
ss5299668TSC-CSHL|TSC1658748rev/BC/Gtcaagacagttaaccagagggctgggcgcatggcttacacctgtaatcccagcactttgg09/20/0210/10/03123Genomicunknown
ss5299862TSC-CSHL|TSC1658410rev/BC/Gtcaagacagttaaccagagggctgggcgcatggcttacacctgtaatcccagcactttgg09/20/0210/10/03110Genomicunknown
ss5299994TSC-CSHL|TSC1658120rev/BC/Gtcaagacagttaaccagagggctgggcgcatggcttacacctgtaatcccagcactttgg09/20/0210/10/03110Genomicunknown
ss5300909TSC-CSHL|TSC1656648rev/BC/Gtcaagacagttaaccagagggctgggcgcatggcttacacctgtaatcccagcactttgg09/20/0210/10/03123Genomicunknown
ss19338088CSHL-HAPMAP|CSHL-HuDD-200402.chr16.NT_024812.10_222543rev/BC/Gtcaagacagttaaccagagggctgggcgcatggcttacacctgtaatcccagcactttgg02/20/0403/04/04120Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs448952|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=123
 taatttttgt acttttagta gagatagggt ttcaccatgt tgcccaggtt ggtctcgaac
 tcctgacgtc aggtgatcca cccgcctcgg cctcccaaaa tgctaggatt acaggcctga
 gccaccccac ctggccCctt gcaagtcttt gagggtggca ctagtctctg cgactctcca
 gggatgtgat aatgcttctg gttaactgtc tttttaaaat tttttttctt tgagacagag
 tctccctctg ttgcccaggc tggagtgcag taggatgatc ttggctcact gcaacctctg
 cctcctgggt tcacgccatt ctcctgcctc agcctcttga gtagctagga ctacaggtgc
 ccgccatcac acctggctaa ttttttgtat ttgtagtaga gatggggttt caccgtgtta
 gccaggatgg tctcaatctc ctgacctcgt gatccgcctg ccttggcctc ccaaagtgct
 gggattacag gtgtaagcca
 S
 tgcgcccagc cctctggtta actgtcttga caggaagtgg aagttacagg gactttccct
 tagccctttc caccatgatt ctctcactcc atgggtggga gagccagtgt ggagatttgt
 cagttgccat agatggctat tcctattata ctctcaggaa tttggaaata accacagggt
 gggaccatag atcaacggag ccctctgtga gctggggctg agctaagact ccatctagca
 cctgaccatc tatctttaag cccctacttt tagtgatgag ccacagtggc attttggatc
 ctcaggactt ggcgttaatt cagagccaat gtctaggaat cctcaaaagg ttgggtattt
 tcttctccct gatgcacact ctagtaaaca gggcatgttc ctctCTCAGG GAGAACCAAA
 CTTCTCTCCA ATTAAGTGAC TCTGGATCTA TGCTGACTTA GGTCTAAAAT TCAGGCGAGA
 GACTACAACT CTTCACTATG

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer: rs448952 was not linked to the human genome 36.3 because it aligned to more than 2 locations on the genome.
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
16NW_001838231.253429226688486plusCalt_assembly_8HuRefHuRefview500
16NT_010393.151974369428338116plusGref_assemblyreferencereferenceview500
16NT_010393.152002011928614541minusGref_assemblyreferencereferenceview500
16NT_010393.152013431128728733minusGref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
U91326 AC002544
dbSNP Blast Analysis
GenBank HTGS Finished:
U91326.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .