R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 48 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7488979|pir||T07612 cellulase (EC 3.2.1.4) Cel3, membrane-anchored - tomato
>gi|2065531|gb|AAC49704.1| (U78526) endo-1,4-beta-glucanase
[Lycopersicon esculentum]
Length = 617
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 617
0 150 300 450 600
Minus Strand HSPs:
Score = 235 (82.7 bits), Expect = 6.7e-18, P = 6.7e-18
Identities = 42/56 (75%), Positives = 48/56 (85%), Frame = -1
Query: 208 TEYSHTEPTLAGNAGLVDAVVALSGDKGTSIDKNTILCAVPPMFHTPPPPPAPWKP 41
+ Y++TEPTLAGNAGLV A+VALSGD+ IDKNT+ AVPPMF TPPPPPAPWKP
Sbjct: 562 SNYNYTEPTLAGNAGLVAALVALSGDRDVGIDKNTLFSAVPPMFPTPPPPPAPWKP 617
>gi|5689613|emb|CAB51903.1| (AJ242807) cellulase [Brassica napus]
Length = 621
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 621
0 150 300 450 600
Minus Strand HSPs:
Score = 225 (79.2 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 43/58 (74%), Positives = 49/58 (84%), Frame = -1
Query: 208 TEYSHTEPTLAGNAGLVDAVVALSGDKGTS--IDKNTILCAVPPMFHTPPPPPAPWKP 41
T Y++TEPTLAGNAGLV A+VALSG++ S IDKNTI AVPP+F TPPPPPAPWKP
Sbjct: 564 TNYNYTEPTLAGNAGLVAALVALSGEEEASGTIDKNTIFSAVPPLFPTPPPPPAPWKP 621
>gi|2129559|pir||S71215 cellulase homolog OR16pep precursor - Arabidopsis
thaliana >gi|1022807|gb|AAB60304.1| (U37702) cellulase [Arabidopsis
thaliana] >gi|3493633|gb|AAC33467.1| (AF074092) cellulase
[Arabidopsis thaliana] >gi|3598956|gb|AAC35344.1| (AF074375)
cellulase [Arabidopsis thaliana] >gi|3978258|gb|AAC83240.1|
(AF073875) endo-1,4-beta-D-glucanase KORRIGAN [Arabidopsis
thaliana]
Length = 621
Frame -1 hits (HSPs): _____
Annotated Domains: __ ___
__________________________________________________
Database sequence: | | | | | | 621
0 150 300 450 600
__________________
Annotated Domains:
PROSITE GLYCOSYL_HYDROL_F9_1: Glycosyl hydrolase 499..515
PROSITE GLYCOSYL_HYDROL_F9_2: Glycosyl hydrolase 559..577
__________________
Minus Strand HSPs:
Score = 217 (76.4 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 41/56 (73%), Positives = 48/56 (85%), Frame = -1
Query: 202 YSHTEPTLAGNAGLVDAVVALSGDKGTS--IDKNTILCAVPPMFHTPPPPPAPWKP 41
Y++TEPTLAGNAGLV A+VALSG++ + IDKNTI AVPP+F TPPPPPAPWKP
Sbjct: 566 YNYTEPTLAGNAGLVAALVALSGEEEATGKIDKNTIFSAVPPLFPTPPPPPAPWKP 621
>gi|7484858|pir||T09889 cellulase homolog T22A6.90 - Arabidopsis thaliana
>gi|5051768|emb|CAB45061.1| (AL078637) endo-1, 4-beta-glucanase
like protein [Arabidopsis thaliana] >gi|7269276|emb|CAB79336.1|
(AL161561) endo-1, 4-beta-glucanase like protein [Arabidopsis
thaliana]
Length = 620
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 620
0 150 300 450 600
Minus Strand HSPs:
Score = 200 (70.4 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 38/57 (66%), Positives = 44/57 (77%), Frame = -1
Query: 208 TEYSHTEPTLAGNAGLVDAVVALSGDKGTS-IDKNTILCAVPPMFHTPPPPPAPWKP 41
T Y++TEPTLAGNAGLV A+VALSG+K IDKNT+ AVPP+ PPPPAPW P
Sbjct: 564 TNYNYTEPTLAGNAGLVAALVALSGEKAVGGIDKNTMFSAVPPLVMATPPPPAPWTP 620
>gi|7527353|dbj|BAA94257.1| (AB040769) endo-1,4-beta-glucanase Cel1 [Hordeum
vulgare]
Length = 621
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 621
0 150 300 450 600
Minus Strand HSPs:
Score = 199 (70.1 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 39/58 (67%), Positives = 46/58 (79%), Frame = -1
Query: 208 TEYSHTEPTLAGNAGLVDAVVALSG-DKGT-SIDKNTILCAVPPMFHTPPPPPAPWKP 41
T Y++TEPTLA NAGLV A+++L+ D G SIDKNTI AVPPMF TPPPPP+ WKP
Sbjct: 564 TNYNYTEPTLAANAGLVAALISLADIDTGRYSIDKNTIFSAVPPMFPTPPPPPSAWKP 621
>gi|2190558|gb|AAB60922.1| (AC001229) F5I14.14 [Arabidopsis thaliana]
Length = 623
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 623
0 150 300 450 600
Minus Strand HSPs:
Score = 169 (59.5 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 30/54 (55%), Positives = 40/54 (74%), Frame = -1
Query: 202 YSHTEPTLAGNAGLVDAVVALSGDKGTSIDKNTILCAVPPMFHTPPPPPAPWKP 41
Y+ +EPTL+GNAGLV A+V+L+ G IDKNT+ +VPP++ PPPP WKP
Sbjct: 570 YNASEPTLSGNAGLVAALVSLTSSGGQQIDKNTMFNSVPPLYSPTPPPPKAWKP 623
>gi|7023440|dbj|BAA91964.1| (AK001891) unnamed protein product [Homo sapiens]
Length = 360
Frame -1 hits (HSPs): ___
Frame -2 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | 360
0 150 300
Minus Strand HSPs:
Score = 52 (18.3 bits), Expect = 0.050, Sum P(3) = 0.048
Identities = 9/15 (60%), Positives = 9/15 (60%), Frame = -1
Query: 85 PMFHTPPPPPAPWKP 41
P H PPPPP P P
Sbjct: 180 PASHFPPPPPPPPLP 194
Score = 34 (12.0 bits), Expect = 0.050, Sum P(3) = 0.048
Identities = 6/9 (66%), Positives = 7/9 (77%), Frame = -2
Query: 117 LTKIPFCVL 91
LT +P CVL
Sbjct: 155 LTNVPACVL 163
Score = 31 (10.9 bits), Expect = 0.050, Sum P(3) = 0.048
Identities = 6/12 (50%), Positives = 9/12 (75%), Frame = -2
Query: 207 QNTVTQSQHLLE 172
QN +TQS +L+
Sbjct: 88 QNCITQSLEVLK 99
>gi|102426|pir||C41132 collagen-related protein 3 precursor - Hydra
magnipapillata >gi|102430|pir||S21931 mini-collagen - Hydra sp
>gi|9451|emb|CAA43381.1| (X61047) mini-collagen [Hydra sp.]
Length = 186
Frame -1 hits (HSPs): ______ ________ _______
Annotated Domains: ______________________________
__________________________________________________
Database sequence: | | | | | 186
0 50 100 150
__________________
Annotated Domains:
DOMO DM00042: FIBRILLARCOLLAGENCARBOXYL-TERMI 55..161
__________________
Minus Strand HSPs:
Score = 57 (20.1 bits), Expect = 0.15, Sum P(2) = 0.14
Identities = 12/26 (46%), Positives = 13/26 (50%), Frame = -1
Query: 97 CAVPPMFHTPPPPPAPWKP*AHRAIG 20
C PP PPPPP P P A +G
Sbjct: 72 CMPPPPPPPPPPPPYPGPPGAPGPMG 97
Score = 53 (18.7 bits), Expect = 0.41, Sum P(2) = 0.34
Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = -1
Query: 88 PPMFHTPPPPPAPWKP 41
PP PPPPP P P
Sbjct: 70 PPCMPPPPPPPPPPPP 85
Score = 52 (18.3 bits), Expect = 0.53, Sum P(2) = 0.41
Identities = 9/20 (45%), Positives = 10/20 (50%), Frame = -1
Query: 100 LCAVPPMFHTPPPPPAPWKP 41
+C P PPPPP P P
Sbjct: 153 ICPAPAPACVPPPPPPPPPP 172
Score = 51 (18.0 bits), Expect = 0.68, Sum P(2) = 0.49
Identities = 9/15 (60%), Positives = 9/15 (60%), Frame = -1
Query: 97 CAVPPMFHTPPPPPA 53
C PP PPPPPA
Sbjct: 161 CVPPPPPPPPPPPPA 175
Score = 34 (12.0 bits), Expect = 0.15, Sum P(2) = 0.14
Identities = 8/20 (40%), Positives = 12/20 (60%), Frame = -1
Query: 163 LVDAVVALSGDKGTSIDKNT 104
LV AVVA + K ++K +
Sbjct: 8 LVFAVVAYASAKSVDLEKRS 27
>gi|2897589|emb|CAA71195.1| (Y10108) cytochrome b558/566, subunit A [Sulfolobus
acidocaldarius]
Length = 462
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | | 462
0 150 300 450
Plus Strand HSPs:
Score = 50 (17.6 bits), Expect = 0.18, Sum P(3) = 0.17
Identities = 12/34 (35%), Positives = 20/34 (58%), Frame = +3
Query: 108 FLSIDVPLSPDNATTASTRPA--FPASVGSV*LY 203
FLS+++ +P +TT ST P +++ V LY
Sbjct: 407 FLSLELVTTPPTSTTTSTSPVTTISSAIPPVTLY 440
Score = 33 (11.6 bits), Expect = 0.18, Sum P(3) = 0.17
Identities = 5/9 (55%), Positives = 8/9 (88%), Frame = +2
Query: 17 ITNGTMSLW 43
++NGT+ LW
Sbjct: 181 MSNGTILLW 189
Score = 32 (11.3 bits), Expect = 0.18, Sum P(3) = 0.17
Identities = 7/18 (38%), Positives = 8/18 (44%), Frame = +2
Query: 62 W-WRCMKHWGNSTQNGIF 112
W W W NST + F
Sbjct: 269 WMWVSGATWNNSTYDPAF 286
>gi|3445206|gb|AAC32436.1| (AC004786) unknown protein [Arabidopsis thaliana]
Length = 279
Frame -1 hits (HSPs): __
Frame -2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 279
0 50 100 150 200 250
Minus Strand HSPs:
Score = 58 (20.4 bits), Expect = 0.24, Sum P(2) = 0.21
Identities = 14/31 (45%), Positives = 16/31 (51%), Frame = -2
Query: 102 FCVLFPQCFIHRHHLQRHGNHKLIVPLVISL 10
FCVLF Q F H HG + PLV+ L
Sbjct: 188 FCVLFCQLF----HAWAHGTKSKLPPLVVGL 214
Score = 36 (12.7 bits), Expect = 0.24, Sum P(2) = 0.21
Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = -1
Query: 190 EPTLAGNAGLV 158
EP+LAG AG +
Sbjct: 96 EPSLAGFAGYI 106
>gi|6671965|gb|AAF23224.1|AC013454_11 (AC013454) unknown protein [Arabidopsis
thaliana] >gi|6714405|gb|AAF26094.1|AC012393_20 (AC012393) unknown
protein [Arabidopsis thaliana]
Length = 126
Frame -1 hits (HSPs): ______________ _______
__________________________________________________
Database sequence: | | | | 126
0 50 100
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = -1
Query: 88 PPMFHTPPPPPAPWKP 41
PP P PPPAP P
Sbjct: 82 PPEPEKPKPPPAPEPP 97
Score = 45 (15.8 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 11/32 (34%), Positives = 19/32 (59%), Frame = -1
Query: 172 NAGLVDAVVALSGDKGTSIDK-NTILCAVPPM 80
N+ +++AV + G S+D+ N+IL V M
Sbjct: 18 NSAIMEAVTEIEGVNHISLDEGNSILTVVGTM 49
>gi|7485344|pir||T04826 hypothetical protein F10M23.370 - Arabidopsis thaliana
>gi|4455226|emb|CAB36549.1| (AL035440) putative protein
[Arabidopsis thaliana] >gi|7269556|emb|CAB79558.1| (AL161566)
putative protein [Arabidopsis thaliana]
Length = 323
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 323
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 58 (20.4 bits), Expect = 0.27, Sum P(2) = 0.24
Identities = 13/31 (41%), Positives = 17/31 (54%), Frame = -2
Query: 102 FCVLFPQCFIHRHHLQRHGNHKLIVPLVISL 10
FC+LF Q F H HG + PLV++L
Sbjct: 220 FCILFSQQF----HAWAHGTKSKLPPLVVAL 246
Score = 37 (13.0 bits), Expect = 0.27, Sum P(2) = 0.24
Identities = 12/26 (46%), Positives = 15/26 (57%), Frame = -1
Query: 190 EPTLAGNAGLVDAVVALSGDKGTSID 113
EP LAG AG + A + SG +ID
Sbjct: 128 EPALAGYAGYILADLG-SGVYHWAID 152
>gi|575478|gb|AAA67703.1| (L37443) protease [human herpesvirus 2]
>gi|1095743|prf||2109370A protease [Human herpesvirus 2]
Length = 636
Frame -1 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | | | 636
0 150 300 450 600
Minus Strand HSPs:
Score = 55 (19.4 bits), Expect = 0.33, Sum P(2) = 0.28
Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = -1
Query: 88 PPMFHTPPPPPAPWKP 41
P H PPPPP P P
Sbjct: 575 PAHAHPPPPPPGPTPP 590
Score = 46 (16.2 bits), Expect = 0.33, Sum P(2) = 0.28
Identities = 9/20 (45%), Positives = 14/20 (70%), Frame = -1
Query: 139 SGDKGT-SIDKNTILCAVPP 83
SGD G ++D +T+ A+PP
Sbjct: 32 SGDSGELALDPDTVRAALPP 51
>gi|1869848|emb|CAB06750.1| (Z86099) protease [human herpesvirus 2]
Length = 637
Frame -1 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | | | 637
0 150 300 450 600
Minus Strand HSPs:
Score = 55 (19.4 bits), Expect = 0.42, Sum P(2) = 0.34
Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = -1
Query: 88 PPMFHTPPPPPAPWKP 41
P H PPPPP P P
Sbjct: 576 PAHAHPPPPPPGPTPP 591
Score = 45 (15.8 bits), Expect = 0.42, Sum P(2) = 0.34
Identities = 9/20 (45%), Positives = 14/20 (70%), Frame = -1
Query: 139 SGDKGT-SIDKNTILCAVPP 83
SGD G ++D +T+ A+PP
Sbjct: 32 SGDPGELALDPDTVRAALPP 51
>gi|1224097|gb|AAA92139.1| (U49329) UL26 protease [human herpesvirus 2]
Length = 638
Frame -1 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | | | 638
0 150 300 450 600
Minus Strand HSPs:
Score = 55 (19.4 bits), Expect = 0.42, Sum P(2) = 0.34
Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = -1
Query: 88 PPMFHTPPPPPAPWKP 41
P H PPPPP P P
Sbjct: 577 PAHAHPPPPPPGPTPP 592
Score = 45 (15.8 bits), Expect = 0.42, Sum P(2) = 0.34
Identities = 9/20 (45%), Positives = 14/20 (70%), Frame = -1
Query: 139 SGDKGT-SIDKNTILCAVPP 83
SGD G ++D +T+ A+PP
Sbjct: 32 SGDPGELALDPDTVRAALPP 51
>gi|7485358|pir||T05400 hypothetical protein F10M6.80 - Arabidopsis thaliana
>gi|2864615|emb|CAA16962.1| (AL021811) putative protein
[Arabidopsis thaliana] >gi|7270132|emb|CAB79946.1| (AL161580)
putative protein [Arabidopsis thaliana]
Length = 842
Frame -1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 842
0 150 300 450 600 750
Minus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.44, P = 0.36
Identities = 14/23 (60%), Positives = 15/23 (65%), Frame = -1
Query: 118 IDKNTILCAVPPMFHTPPPPPAP 50
+D N I PP HTPPPPPAP
Sbjct: 589 VDMNEIKALPPPENHTPPPPPAP 611
Score = 80 (28.2 bits), Expect = 0.44, P = 0.36
Identities = 16/27 (59%), Positives = 17/27 (62%), Frame = -1
Query: 118 IDKNTILCAVPPMFHTPPPPPAPW-KP 41
+D N I PP HTPPPPPAP KP
Sbjct: 589 VDMNEIKALPPPENHTPPPPPAPEPKP 615
Score = 71 (25.0 bits), Expect = 4.0, P = 0.98
Identities = 15/30 (50%), Positives = 17/30 (56%), Frame = -1
Query: 118 IDKNTILCAVPPMFHTPPPPPAP----WKP 41
+D N I PP HTPPPPPAP +P
Sbjct: 589 VDMNEIKALPPPENHTPPPPPAPEPKPQQP 618
>gi|1076291|pir||S51171 amino acid transport protein AAT1 - Arabidopsis
thaliana >gi|2911069|emb|CAA17531.1| (AL021960) amino acid
transport protein AAT1 [Arabidopsis thaliana]
>gi|7268909|emb|CAB79112.1| (AL161554) amino acid transport protein
AAT1 [Arabidopsis thaliana]
Length = 533
Frame -1 hits (HSPs): ____ ___
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 533
0 150 300 450
__________________
Annotated Domains:
DOMO DM01125: 4..324
DOMO DM05033: 326..529
__________________
Minus Strand HSPs:
Score = 55 (19.4 bits), Expect = 0.57, Sum P(2) = 0.44
Identities = 11/29 (37%), Positives = 18/29 (62%), Frame = -1
Query: 205 EYSHTEPTLAGNAGLVDAVVALSGDKGTS 119
+YSH +P G ++ V+A+ G KG+S
Sbjct: 138 DYSHLDPIAVGVCAII-CVLAVVGTKGSS 165
Score = 42 (14.8 bits), Expect = 0.57, Sum P(2) = 0.44
Identities = 9/20 (45%), Positives = 10/20 (50%), Frame = -1
Query: 61 PPAPWKP*AHRAIGYFFIAS 2
P PW P A AI F + S
Sbjct: 455 PLVPWLPSASIAINIFLLGS 474
>gi|7020284|dbj|BAA91064.1| (AK000296) unnamed protein product [Homo sapiens]
Length = 210
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Minus Strand HSPs:
Score = 52 (18.3 bits), Expect = 0.76, Sum P(2) = 0.53
Identities = 9/15 (60%), Positives = 9/15 (60%), Frame = -1
Query: 85 PMFHTPPPPPAPWKP 41
P H PPPPP P P
Sbjct: 30 PASHFPPPPPPPPLP 44
Score = 34 (12.0 bits), Expect = 0.76, Sum P(2) = 0.53
Identities = 6/9 (66%), Positives = 7/9 (77%), Frame = -2
Query: 117 LTKIPFCVL 91
LT +P CVL
Sbjct: 5 LTNVPACVL 13
>gi|425682|gb|AAB28462.1| extensin=nodule-specific proline-rich protein {clone
VfNDS-E} [Vicia faba=broadbeans, root nodules, Peptide Partial, 116
aa]
Length = 116
Frame -1 hits (HSPs): _______ _______
__________________________________________________
Database sequence: | | | | 116
0 50 100
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 0.78, P = 0.54
Identities = 9/14 (64%), Positives = 12/14 (85%), Frame = -1
Query: 85 PMFHTPPPPPAPWK 44
P++H+PPPPP P K
Sbjct: 52 PVYHSPPPPPTPHK 65
Score = 64 (22.5 bits), Expect = 0.99, P = 0.63
Identities = 9/14 (64%), Positives = 11/14 (78%), Frame = -1
Query: 85 PMFHTPPPPPAPWK 44
P +H+PPPPP P K
Sbjct: 18 PFYHSPPPPPTPHK 31
Score = 62 (21.8 bits), Expect = 1.6, P = 0.80
Identities = 10/16 (62%), Positives = 12/16 (75%), Frame = -1
Query: 85 PMFHTPPPPPAPWK-P 41
P +H+PPPPP P K P
Sbjct: 18 PFYHSPPPPPTPHKKP 33
>gi|2078307|gb|AAB54090.1| (U67264) AcMNPV ORF8/ORF1629 homolog [Helicoverpa
zea nuclear polyhedrosis virus]
Length = 412
Frame -1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 412
0 150 300
Minus Strand HSPs:
Score = 50 (17.6 bits), Expect = 0.84, Sum P(2) = 0.57
Identities = 11/47 (23%), Positives = 22/47 (46%), Frame = -1
Query: 190 EPTLAGNAGLVDAVVA--LSGDKGTSIDKNTILCAVPPMFHTPPPPP 56
+PT + ++ ++ + D +S + + +PP PPPPP
Sbjct: 102 KPTTVSTSDIMQKTISPTIIIDSESSSPQTLMPPPIPPPIPPPPPPP 148
Score = 43 (15.1 bits), Expect = 0.84, Sum P(2) = 0.57
Identities = 7/10 (70%), Positives = 7/10 (70%), Frame = -1
Query: 70 PPPPPAPWKP 41
PPPPP P P
Sbjct: 157 PPPPPPPPPP 166
>gi|1020287|gb|AAA79496.1| (U31793) putative [Human papillomavirus type 61]
Length = 105
Frame -1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 0.99, P = 0.63
Identities = 11/22 (50%), Positives = 11/22 (50%), Frame = -1
Query: 97 CAVPPMFHTPPPPPAPWKP*AH 32
C P H PPPPP W P H
Sbjct: 27 CGTTP--HRPPPPPRAWAPPRH 46
>gi|5668787|gb|AAD46013.1|AC007894_11 (AC007894) F21H2.12 [Arabidopsis
thaliana]
Length = 451
Frame -1 hits (HSPs): ___ __
__________________________________________________
Database sequence: | | | || 451
0 150 300 450
Minus Strand HSPs:
Score = 51 (18.0 bits), Expect = 1.0, Sum P(2) = 0.64
Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = -1
Query: 82 MFHTPPPPPAP 50
+F PPPPPAP
Sbjct: 436 VFGVPPPPPAP 446
Score = 42 (14.8 bits), Expect = 1.0, Sum P(2) = 0.64
Identities = 11/20 (55%), Positives = 13/20 (65%), Frame = -1
Query: 184 TLAGNAGLVD-AVVALSGDK 128
T AG VD A+ AL+GDK
Sbjct: 123 TFAGTFVSVDEAIAALAGDK 142
>gi|2134384|pir||I50620 procKr2 - chicken (fragment) >gi|577019|emb|CAA40140.1|
(X56805) procKr2 [Gallus gallus]
Length = 1173
Frame -1 hits (HSPs): _ _
Frame -3 hits (HSPs): ___
Annotated Domains: ________ ____________
__________________________________________________
Database sequence: | | | | | | | | | 1173
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 453..460
PROSITE CYTOCHROME_C: Cytochrome c family heme-b 269..274
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 125..145
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 13..33
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 153..173
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 241..261
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 269..289
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 314..334
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 342..362
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 370..390
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 398..418
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 41..61
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 426..446
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 454..474
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 482..502
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 69..89
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 97..117
__________________
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 1.5, Sum P(2) = 0.77
Identities = 13/45 (28%), Positives = 25/45 (55%), Frame = -3
Query: 191 RANTCWKCRSS*RSSGIVRRQRHIY*QKYHFVCCSPNVSYTATTS 57
R C C + ++S +RR RHI+ + +VC + ++T +T+
Sbjct: 65 RPYKCTSCPKAFKNSSSLRRHRHIHTGERPYVCSACGKAFTQSTN 109
Score = 36 (12.7 bits), Expect = 1.5, Sum P(2) = 0.77
Identities = 7/11 (63%), Positives = 7/11 (63%), Frame = -1
Query: 73 TPPPPPAPWKP 41
TP PPPA P
Sbjct: 293 TPHPPPATPTP 303
Score = 31 (10.9 bits), Expect = 4.6, Sum P(2) = 0.99
Identities = 6/10 (60%), Positives = 7/10 (70%), Frame = -1
Query: 73 TPPPPPAPWK 44
+P P PAP K
Sbjct: 1094 SPVPTPAPPK 1103
>gi|1491688|emb|CAA63877.1| (X94164) putative [Human papillomavirus type 72]
Length = 106
Frame -1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Minus Strand HSPs:
Score = 62 (21.8 bits), Expect = 1.6, P = 0.80
Identities = 11/22 (50%), Positives = 11/22 (50%), Frame = -1
Query: 97 CAVPPMFHTPPPPPAPWKP*AH 32
C PP PPPPP W P H
Sbjct: 26 CQTPP---NPPPPPRAWAPPRH 44
>gi|6978799 ref|NP_036683.1| early growth response 1
>gi|119244|sp|P08154|EGR1_RAT EARLY GROWTH RESPONSE PROTEIN 1
(EGR-1) (NERVE GROWTH FACTOR-INDUCED PROTEIN A) (NGFI-A)
>gi|112027|pir||A32225 nerve growth factor-induced A protein - rat
>gi|205694|gb|AAA61927.1| (M18416) nerve growth factor-induced
protein [Rattus norvegicus] >gi|623563|gb|AAA60740.1| (J04154)
nerve growth factor [Rattus norvegicus]
Length = 508
Frame 3 hits (HSPs): __ ___
__________________________________________________
Database sequence: | | | | | 508
0 150 300 450
Plus Strand HSPs:
Score = 52 (18.3 bits), Expect = 1.7, Sum P(2) = 0.81
Identities = 13/21 (61%), Positives = 14/21 (66%), Frame = +3
Query: 132 SPDNATT-ASTRPAFPASVGS 191
SP ATT AS PAFPA V +
Sbjct: 457 SPSVATTYASVPPAFPAQVST 477
Score = 40 (14.1 bits), Expect = 1.7, Sum P(2) = 0.81
Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +3
Query: 51 GAGGGGGV*NIGGTA 95
G GGGGG N G +A
Sbjct: 44 GGGGGGGS-NSGSSA 57
>gi|113926|sp|P05140|ANP_HEMAM ANTIFREEZE PROTEIN PRECURSOR (AFP)
>gi|1072445|pir||A34313 antifreeze protein II precursor - sea raven
Length = 163
Frame -1 hits (HSPs): ________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 163
0 50 100 150
__________________
Annotated Domains:
DOMO DM00035: C-TYPELECTIN 34..160
Entrez Domain: C-TYPE LECTIN (LONG FORM). 39..163
PFAM lectin_c: Lectin C-type domain 67..159
PRINTS ANTIFREEZEII1: Antifreeze motif I - 2 40..52
PRINTS ANTIFREEZEII2: Antifreeze motif II - 2 52..69
PRINTS ANTIFREEZEII3: Antifreeze motif III - 2 70..87
PRINTS ANTIFREEZEII4: Antifreeze motif IV - 2 97..113
PRINTS ANTIFREEZEII5: Antifreeze motif V - 2 119..130
PRINTS ANTIFREEZEII6: Antifreeze motif VI - 2 131..142
PRINTS ANTIFREEZEII7: Antifreeze motif VII - 2 146..159
PRODOM PD060982: ANP_HEMAM 1..77
PRODOM PD000254: PA2R(10) MANR(8) LEM1(8) 79..137
PRODOM PD197100: ANP_HEMAM 139..162
__________________
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 1.7, P = 0.82
Identities = 19/49 (38%), Positives = 23/49 (46%), Frame = -1
Query: 163 LVDAVVALSGDKGTSIDKNTILCAVPPMFHTPPPPPAPWKP*AHRAIGY 17
LV A++AL+ I K T A P PP PA W+P R I Y
Sbjct: 7 LVCAMMALTQANDDKILKGTATEAGPVSQRAPPNCPAGWQPLGDRCIYY 55
>gi|7508781|pir||T26064 hypothetical protein W01G7.1 - Caenorhabditis elegans
>gi|3924900|emb|CAB03453.1| (Z81135) predicted using
Genefinder~cDNA EST EMBL:D68390 comes from this gene~cDNA EST
yk442e12.5 comes from this gene~cDNA EST yk466e9.5 comes from this
gene [Caenorhabditis elegans]
Length = 627
Frame -1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 627
0 150 300 450 600
Minus Strand HSPs:
Score = 73 (25.7 bits), Expect = 1.8, P = 0.83
Identities = 15/30 (50%), Positives = 17/30 (56%), Frame = -1
Query: 130 KGTSIDKNTILCAVPPMFHTPPPPPAPWKP 41
K S D +LC PP+ PPPPP P KP
Sbjct: 498 KNVSADAIRVLCNRPPLPPLPPPPPPP-KP 526
Score = 70 (24.6 bits), Expect = 3.7, P = 0.97
Identities = 15/31 (48%), Positives = 17/31 (54%), Frame = -1
Query: 130 KGTSIDKNTILCAVPPMFHTPPPPPAPW-KP 41
K S D +LC PP+ PPPPP P KP
Sbjct: 498 KNVSADAIRVLCNRPPLPPLPPPPPPPKPKP 528
>gi|198605|gb|AAA39382.1| (M19643) Krox-24 protein [Mus musculus]
Length = 484
Frame 3 hits (HSPs): ___ ___
__________________________________________________
Database sequence: | | | | | 484
0 150 300 450
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 1.9, Sum P(2) = 0.85
Identities = 13/21 (61%), Positives = 13/21 (61%), Frame = +3
Query: 132 SPDNATT-ASTRPAFPASVGS 191
SP ATT AS PAFP V S
Sbjct: 433 SPSVATTFASVPPAFPTQVSS 453
Score = 40 (14.1 bits), Expect = 1.9, Sum P(2) = 0.85
Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +3
Query: 51 GAGGGGGV*NIGGTA 95
G GGGGG N G +A
Sbjct: 20 GGGGGGGT-NSGTSA 33
Score = 33 (11.6 bits), Expect = 9.4, Sum P(2) = 1.0
Identities = 8/13 (61%), Positives = 9/13 (69%), Frame = +3
Query: 54 AGGGGGV*NIGGT 92
+GGGGG GGT
Sbjct: 19 SGGGGG----GGT 27
>gi|7484731|pir||T09873 probable cellulase (EC 3.2.1.4) - upland cotton
(fragment) >gi|2244740|dbj|BAA21111.1| (D88417)
endo-1,4-beta-glucanase [Gossypium hirsutum]
Length = 324
Frame -1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | | 324
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 69 (24.3 bits), Expect = 2.0, P = 0.87
Identities = 17/52 (32%), Positives = 23/52 (44%), Frame = -1
Query: 202 YSHTEPTLAGNAGLVDAVVALSGDKGTSIDKNTILCAVP-PMFHTPPPPPAP 50
Y TEP NA L+ + L+G G ++ VP P+ P P P P
Sbjct: 168 YEQTEPATYNNAPLLGILARLAGGHGGYNQLLPVVAPVPNPVIAKPKPAPKP 219
>gi|3514051|gb|AAC34103.1| (AF082809) glycoprotein gJ [Baboon herpesvirus 2]
Length = 116
Frame -1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 2.1, P = 0.87
Identities = 13/35 (37%), Positives = 18/35 (51%), Frame = -1
Query: 154 AVVALSGDKGTSIDKNTILCAVPPMFHTPPPPPAP 50
+ A SGD TSI+ + + A P H+ P P P
Sbjct: 37 SATASSGDNATSINAGSTITAAAPPGHSTPWPSLP 71
>gi|7022861|dbj|BAA91748.1| (AK001542) unnamed protein product [Homo sapiens]
Length = 659
Frame -1 hits (HSPs): ___
Frame -2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 659
0 150 300 450 600
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 2.2, Sum P(2) = 0.89
Identities = 11/30 (36%), Positives = 15/30 (50%), Frame = -1
Query: 130 KGTSIDKNTILCAVPPMFHTPPPPPAPWKP 41
KG + +L +P + PPPPP W P
Sbjct: 337 KGKDVSYCPVLAPLPLLLPPPPPPPM-WNP 365
Score = 33 (11.6 bits), Expect = 2.2, Sum P(2) = 0.89
Identities = 5/10 (50%), Positives = 7/10 (70%), Frame = -2
Query: 48 GNHKLIVPLV 19
GNH + P+V
Sbjct: 375 GNHGFVAPVV 384
>gi|90459|pir||JS0304 developmental control protein Krox-24 - mouse
>gi|1325982|gb|AAB00468.1| (M28845) zinc finger protein [Mus
musculus]
Length = 533
Frame 3 hits (HSPs): __ __
Annotated Domains: _________
__________________________________________________
Database sequence: | | | | | 533
0 150 300 450
__________________
Annotated Domains:
Entrez region: zinc fingers 331..416
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 338..360
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 368..388
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 396..416
__________________
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 2.3, Sum P(2) = 0.90
Identities = 13/21 (61%), Positives = 13/21 (61%), Frame = +3
Query: 132 SPDNATT-ASTRPAFPASVGS 191
SP ATT AS PAFP V S
Sbjct: 482 SPSVATTFASVPPAFPTQVSS 502
Score = 40 (14.1 bits), Expect = 2.3, Sum P(2) = 0.90
Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +3
Query: 51 GAGGGGGV*NIGGTA 95
G GGGGG N G +A
Sbjct: 69 GGGGGGGT-NSGTSA 82
>gi|6681285 ref|NP_031939.1| early growth response 1
>gi|119243|sp|P08046|EGR1_MOUSE EARLY GROWTH RESPONSE PROTEIN 1
(EGR-1) (KROX-24 PROTEIN) (ZIF268) >gi|201934|gb|AAA40416.1|
(M22326) growth factor-induced protein [Mus musculus]
>gi|309213|gb|AAA37544.1| (M20157) Egr-1 protein [Mus musculus]
Length = 533
Frame 3 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | | 533
0 150 300 450
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 2.3, Sum P(2) = 0.90
Identities = 13/21 (61%), Positives = 13/21 (61%), Frame = +3
Query: 132 SPDNATT-ASTRPAFPASVGS 191
SP ATT AS PAFP V S
Sbjct: 482 SPSVATTFASVPPAFPTQVSS 502
Score = 40 (14.1 bits), Expect = 2.3, Sum P(2) = 0.90
Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +3
Query: 51 GAGGGGGV*NIGGTA 95
G GGGGG N G +A
Sbjct: 69 GGGGGGGS-NSGSSA 82
>gi|213874|gb|AAA49617.1| (J02593) antifreeze polypeptide (AFP) precursor
[Hemitripterus americanus]
Length = 195
Frame -1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 195
0 50 100 150
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 2.5, P = 0.92
Identities = 19/49 (38%), Positives = 23/49 (46%), Frame = -1
Query: 163 LVDAVVALSGDKGTSIDKNTILCAVPPMFHTPPPPPAPWKP*AHRAIGY 17
LV A++AL+ I K T A P PP PA W+P R I Y
Sbjct: 39 LVCAMMALTQANDDKILKGTATEAGPVSQRAPPNCPAGWQPLGDRCIYY 87
>gi|5453736 ref|NP_005351.2| v-maf musculoaponeurotic fibrosarcoma (avian)
oncogene homolog >gi|3335150|gb|AAC27038.1| (AF055377) long form
transcription factor C-MAF [Homo sapiens]
Length = 403
Frame 3 hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | 403
0 150 300
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 2.5, Sum P(2) = 0.92
Identities = 10/19 (52%), Positives = 10/19 (52%), Frame = +3
Query: 42 GFHGAGGGGGV*NIGGTAH 98
G G GGGGG GG H
Sbjct: 229 GGGGGGGGGGAAGAGGALH 247
Score = 37 (13.0 bits), Expect = 2.5, Sum P(2) = 0.92
Identities = 12/25 (48%), Positives = 13/25 (52%), Frame = +3
Query: 114 SIDVPLSPDNATTASTRPAFPASVG 188
S D P SP+ T TR P SVG
Sbjct: 362 SSDNPSSPEFFITEPTRKLEP-SVG 385
>gi|7940276|gb|AAF70835.1|AC003113_2 (AC003113) F24O1.6 [Arabidopsis thaliana]
Length = 70
Frame -1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 2.6, P = 0.93
Identities = 11/17 (64%), Positives = 12/17 (70%), Frame = -1
Query: 88 PPMFHTPPPP-PAPWKP 41
PP FH PPPP P P +P
Sbjct: 10 PPPFHHPPPPRPPPPEP 26
>gi|6677613 ref|NP_033581.1| zinc finger protein 40 >gi|477332|pir||A48830
probable transcription regulator NT fin12 - mouse
>gi|286105|dbj|BAA01482.1| (D10632) zinc finger protein [Mus
musculus]
Length = 728
Frame -2 hits (HSPs): _
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 728
0 150 300 450 600
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 17/42 (40%), Positives = 23/42 (54%), Frame = -3
Query: 206 RIQSHRANTCWKCRSS*RSSGIVRRQRHIY*QKYHFVCCSPN 81
R + HR N C K SS SSG+ R QR I+ + ++C N
Sbjct: 291 RRKLHRCNECGKSLSS--SSGLQRHQR-IHRGEKAYICAECN 329
Score = 33 (11.6 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 5/12 (41%), Positives = 9/12 (75%), Frame = -2
Query: 84 QCFIHRHHLQRH 49
+CFI + +L+ H
Sbjct: 526 KCFIQKANLRTH 537
>gi|102425|pir||B41132 collagen-related protein 2 - Hydra magnipapillata
(fragment) >gi|102429|pir||S21930 mini-collagen - Hydra sp
>gi|9449|emb|CAA43380.1| (X61046) mini-collagen [Hydra sp.]
Length = 142
Frame -1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 142
0 50 100
Minus Strand HSPs:
Score = 62 (21.8 bits), Expect = 2.8, P = 0.94
Identities = 12/21 (57%), Positives = 12/21 (57%), Frame = -1
Query: 103 ILCAVPPMFHTPPPPPAPWKP 41
I CA PP PPPPP P P
Sbjct: 42 ICCAPPPPPPPPPPPPPPPPP 62
Score = 61 (21.5 bits), Expect = 3.7, P = 0.97
Identities = 11/22 (50%), Positives = 12/22 (54%), Frame = -1
Query: 106 TILCAVPPMFHTPPPPPAPWKP 41
T +C PP PPPPP P P
Sbjct: 40 TPICCAPPPPPPPPPPPPPPPP 61
>gi|1020247|gb|AAA79461.1| (U31788) putative [Human papillomavirus type 44]
Length = 144
Frame -1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 144
0 50 100
Minus Strand HSPs:
Score = 62 (21.8 bits), Expect = 2.9, P = 0.94
Identities = 11/21 (52%), Positives = 13/21 (61%), Frame = -1
Query: 103 ILCAVPPMF---HTPPPPPAP 50
+LC P+ HTPPPPP P
Sbjct: 49 VLCKTYPLLGLLHTPPPPPPP 69
Score = 61 (21.5 bits), Expect = 3.8, P = 0.98
Identities = 13/29 (44%), Positives = 16/29 (55%), Frame = -1
Query: 103 ILCAVPPMF---HTPPPPPAP--WKP*AH 32
+LC P+ HTPPPPP P +P H
Sbjct: 49 VLCKTYPLLGLLHTPPPPPPPPLHRPHPH 77
>gi|1020271|gb|AAA79482.1| (U31791) putative [Human papillomavirus type 55]
Length = 144
Frame -1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 144
0 50 100
Minus Strand HSPs:
Score = 62 (21.8 bits), Expect = 2.9, P = 0.94
Identities = 11/21 (52%), Positives = 13/21 (61%), Frame = -1
Query: 103 ILCAVPPMF---HTPPPPPAP 50
+LC P+ HTPPPPP P
Sbjct: 49 VLCKTYPLLGLLHTPPPPPPP 69
Score = 61 (21.5 bits), Expect = 3.8, P = 0.98
Identities = 13/29 (44%), Positives = 16/29 (55%), Frame = -1
Query: 103 ILCAVPPMF---HTPPPPPAP--WKP*AH 32
+LC P+ HTPPPPP P +P H
Sbjct: 49 VLCKTYPLLGLLHTPPPPPPPPLHRPHLH 77
>gi|7523490|dbj|BAA94218.1| (AP001633) hypothetical protein [Oryza sativa]
Length = 436
Frame -1 hits (HSPs): _______ __
__________________________________________________
Database sequence: | | | | 436
0 150 300
Minus Strand HSPs:
Score = 53 (18.7 bits), Expect = 3.0, Sum P(2) = 0.95
Identities = 16/45 (35%), Positives = 23/45 (51%), Frame = -1
Query: 172 NAGLVDAVVALSGDKGTSIDKNTILCAVP------PMFHTPPPPPA 53
+A + D V A +GD+ T +DK L + P P + PPP A
Sbjct: 53 DAAMGDEVAA-AGDEATMLDKGDALHSSPRLRLLAPRVSSTPPPSA 97
Score = 35 (12.3 bits), Expect = 3.0, Sum P(2) = 0.95
Identities = 5/8 (62%), Positives = 7/8 (87%), Frame = -1
Query: 55 APWKP*AH 32
APW+P +H
Sbjct: 288 APWEPTSH 295
>gi|2760483|emb|CAA60014.1| (X86019) SH3-domain interacting protein [Homo
sapiens]
Length = 494
Frame 3 hits (HSPs): ___ ___ ___
__________________________________________________
Database sequence: | | | | | 494
0 150 300 450
Plus Strand HSPs:
Score = 52 (18.3 bits), Expect = 3.1, Sum P(2) = 0.96
Identities = 10/16 (62%), Positives = 11/16 (68%), Frame = +3
Query: 42 GFHGAGGGGGV*NIGG 89
GF G GGGGG + GG
Sbjct: 79 GFGGGGGGGGGGSFGG 94
Score = 37 (13.0 bits), Expect = 3.1, Sum P(2) = 0.96
Identities = 8/23 (34%), Positives = 11/23 (47%), Frame = +3
Query: 123 VPLSPDNATTASTRPAFPASVGS 191
VP P + T P FP + G+
Sbjct: 206 VPGGPRQPSPGPTPPPFPGNRGT 228
Score = 32 (11.3 bits), Expect = 9.8, Sum P(2) = 1.0
Identities = 6/19 (31%), Positives = 10/19 (52%), Frame = +3
Query: 126 PLSPDNATTASTRPAFPAS 182
PL PD + + P P++
Sbjct: 418 PLPPDRPSAGAPPPPPPST 436
>gi|4507911 ref|NP_003378.1| Wiskott-Aldrich syndrome protein interacting
protein >gi|2906006|gb|AAC03767.1| (AF031588) WASP interacting
protein [Homo sapiens]
Length = 503
Frame 3 hits (HSPs): ___ ___
__________________________________________________
Database sequence: | | | | | 503
0 150 300 450
Plus Strand HSPs:
Score = 52 (18.3 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 10/16 (62%), Positives = 11/16 (68%), Frame = +3
Query: 42 GFHGAGGGGGV*NIGG 89
GF G GGGGG + GG
Sbjct: 79 GFGGGGGGGGGGSFGG 94
Score = 37 (13.0 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 8/23 (34%), Positives = 11/23 (47%), Frame = +3
Query: 123 VPLSPDNATTASTRPAFPASVGS 191
VP P + T P FP + G+
Sbjct: 206 VPGGPRQPSPGPTPPPFPGNRGT 228
>gi|1586823|prf||2204390A synaptojanin [Rattus norvegicus]
Length = 1558
Frame -1 hits (HSPs): __ __ __
__________________________________________________
Database sequence: | | | | | 1558
0 500 1000 1500
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 14/35 (40%), Positives = 15/35 (42%), Frame = -1
Query: 145 ALSGDKGTSIDKNTILCAVPPMFHTPPPPPAPWKP 41
A S D S N C +P PPPPP P P
Sbjct: 1498 AASFDDDWSKGTNVSFCVLPARRPPPPPPPVPLLP 1532
Score = 36 (12.7 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 6/17 (35%), Positives = 9/17 (52%), Frame = -1
Query: 202 YSHTEPTLAGNAGLVDA 152
Y PT+ AG++ A
Sbjct: 1172 YGAARPTIPARAGVISA 1188
Score = 32 (11.3 bits), Expect = 8.2, Sum P(2) = 1.0
Identities = 9/23 (39%), Positives = 10/23 (43%), Frame = -1
Query: 199 SHTEPTLAGNAGLVDAVVALSGD 131
S T TL G V A + GD
Sbjct: 992 SSTSSTLLGEDAEVSADFDMEGD 1014
>gi|7514092|pir||S68448 synaptojanin, 170K - rat
Length = 1575
Frame -1 hits (HSPs): __ __ __
__________________________________________________
Database sequence: | | | | | 1575
0 500 1000 1500
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 14/35 (40%), Positives = 15/35 (42%), Frame = -1
Query: 145 ALSGDKGTSIDKNTILCAVPPMFHTPPPPPAPWKP 41
A S D S N C +P PPPPP P P
Sbjct: 1515 AASFDDDWSKGTNVSFCVLPARRPPPPPPPVPLLP 1549
Score = 36 (12.7 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 6/17 (35%), Positives = 9/17 (52%), Frame = -1
Query: 202 YSHTEPTLAGNAGLVDA 152
Y PT+ AG++ A
Sbjct: 1188 YGAARPTIPARAGVISA 1204
Score = 32 (11.3 bits), Expect = 8.4, Sum P(2) = 1.0
Identities = 9/23 (39%), Positives = 10/23 (43%), Frame = -1
Query: 199 SHTEPTLAGNAGLVDAVVALSGD 131
S T TL G V A + GD
Sbjct: 992 SSTSSTLLGEDAEVSADFDMEGD 1014
>gi|284517|pir||D42825 Kruppel-type zinc finger protein ZNF70 - human
(fragment)
Length = 91
Frame -2 hits (HSPs): _________________
Annotated Domains: ____________ ____________ ____________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
__________________
Annotated Domains:
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 10..30
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 38..58
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 66..86
__________________
Minus Strand HSPs:
Score = 59 (20.8 bits), Expect = 3.4, P = 0.97
Identities = 14/30 (46%), Positives = 15/30 (50%), Frame = -2
Query: 138 QATKAHLLTKIPFCVLFPQCFIHRHHLQRH 49
Q K H L K C L + F HR HL RH
Sbjct: 25 QHRKIHTLKKPHECDLCGKAFCHRSHLIRH 54
>gi|1363496|pir||S57663 cellulase (EC 3.2.1.4) 3D precursor - pepper
>gi|1247397|emb|CAA60737.1| (X87323) Beta-1,4-endoglycanohydrolase
[Capsicum annuum]
Length = 506
Frame -1 hits (HSPs): _____
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | 506
0 150 300 450
__________________
Annotated Domains:
DOMO DM00748: GLYCOSYLHYDROLASESFAMILY9 13..478
PROSITE GLYCOSYL_HYDROL_F9_1: Glycosyl hydrolase 386..402
PROSITE GLYCOSYL_HYDROL_F9_2: Glycosyl hydrolase 450..468
__________________
Minus Strand HSPs:
Score = 69 (24.3 bits), Expect = 3.6, P = 0.97
Identities = 17/41 (41%), Positives = 22/41 (53%), Frame = -1
Query: 208 TEYSHTEPTLAGNAGLVDAVVALSGDKGTSIDKN---TILC 95
++YSH+EPT NA V +V AL G I+ ILC
Sbjct: 455 SDYSHSEPTTYMNAAFVGSVAALIGQNRRQINSQFNEPILC 495
>gi|1655543|emb|CAA65826.1| (X97188) cellulase [Capsicum annuum]
Length = 506
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 506
0 150 300 450
Minus Strand HSPs:
Score = 69 (24.3 bits), Expect = 3.6, P = 0.97
Identities = 17/41 (41%), Positives = 22/41 (53%), Frame = -1
Query: 208 TEYSHTEPTLAGNAGLVDAVVALSGDKGTSIDKN---TILC 95
++YSH+EPT NA V +V AL G I+ ILC
Sbjct: 455 SDYSHSEPTTYMNAAFVGSVAALIGQNRRQINSQFNEPILC 495
>gi|116223|sp|P17110|CH36_CERCA CHORION PROTEIN S36 >gi|103020|pir||S09208
chorion protein s36 - Mediterranean fruit fly
>gi|295730|emb|CAA35723.1| (X51342) chorion protein s36 [Ceratitis
capitata]
Length = 320
Frame 3 hits (HSPs): ___ _____
Annotated Domains: _______________________________________ ____ _
__________________________________________________
Database sequence: | | | | | | | | 320
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM07741: 1..194
DOMO DM08239: 196..245
Entrez Repetitive region: 1. 178..181
Entrez Repetitive region: 2. 258..261
Entrez Repetitive region: 3. 266..269
Entrez Repetitive region: 4. 274..277
Entrez Repetitive region: 5. 290
PRODOM PD022729: CH36(3) 63..245
__________________
Plus Strand HSPs:
Score = 49 (17.2 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 9/17 (52%), Positives = 11/17 (64%), Frame = +3
Query: 21 PMAR*AYGFHGAGGGGG 71
P+A +YG GGGGG
Sbjct: 14 PLATASYGSSSGGGGGG 30
Score = 35 (12.3 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 9/27 (33%), Positives = 14/27 (51%), Frame = +3
Query: 105 VFLSIDVPLSPDNATTASTRPAFPASV 185
V+ S+ VP +N +T+P P V
Sbjct: 132 VYRSLLVPSGQNNHQVIATQPLPPIIV 158
>gi|5901928 ref|NP_008938.1| pre-mRNA cleavage factor Im (68kD)
>gi|1362819|pir||S57447 HPBRII-7 protein - human
>gi|871299|emb|CAA47752.1| (X67337) Human pre-mRNA cleavage factor
I 68 kDa subunit [Homo sapiens] >gi|871301|emb|CAA47751.1| (X67336)
HPBRII-7 [Homo sapiens]
Length = 551
Frame -1 hits (HSPs): ____ __
__________________________________________________
Database sequence: | | | | | 551
0 150 300 450
Minus Strand HSPs:
Score = 56 (19.7 bits), Expect = 3.9, Sum P(2) = 0.98
Identities = 9/16 (56%), Positives = 10/16 (62%), Frame = -1
Query: 88 PPMFHTPPPPPAPWKP 41
PP PPPPP P+ P
Sbjct: 310 PPPQQGPPPPPGPFPP 325
Score = 33 (11.6 bits), Expect = 3.9, Sum P(2) = 0.98
Identities = 7/27 (25%), Positives = 14/27 (51%), Frame = -1
Query: 163 LVDAVVALSGDKGTSIDKNTILCAVPP 83
L D V++ S + G + + + +PP
Sbjct: 32 LYDDVISPSANNGDAPEDRDYMDTLPP 58
WARNING: HSPs involving 48 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.349 0.158 0.527
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.343 0.145 0.670
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.348 0.150 0.548
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.325 0.141 0.469
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.353 0.153 0.563
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.341 0.136 0.493
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 68 68 10. 57 3 12 22 0.12 30
27 0.10 31
+2 0 69 69 10. 57 3 12 22 0.12 30
27 0.11 31
+1 0 69 68 10. 57 3 12 22 0.12 30
27 0.10 31
-1 0 69 69 10. 57 3 12 22 0.12 30
27 0.11 31
-2 0 69 69 10. 57 3 12 22 0.12 30
27 0.11 31
-3 0 68 68 10. 57 3 12 22 0.12 30
27 0.10 31
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 98
No. of states in DFA: 584 (58 KB)
Total size of DFA: 138 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 114.82u 1.02s 115.84t Elapsed: 00:01:18
Total cpu time: 114.87u 1.12s 115.99t Elapsed: 00:01:19
Start: Wed Feb 14 11:09:30 2001 End: Wed Feb 14 11:10:49 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000