Basic Search | Intermediate Search | Gene Image Map |  Home

Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR1064 IGR1063 IGR1070 IGR1069 IGR1062 IGR1067 IGR1066 IGR1065 IGR1068 SMu1236 tpn, - SMu1238 tnp, - SMu1237 psaA, - SMu1231 fabD, - SMu1227 ituA,mycA, - SMu1228 ylbB, - SMu1230 SMu1235 SMu1233 SMu1232 SMu1236 tpn, - SMu1238 tnp, - SMu1237 psaA, - SMu1231 fabD, - SMu1227 ituA,mycA, - SMu1228 ylbB, - SMu1230 SMu1235 SMu1233 SMu1232 Type: tandem, Name: SMu-TR-22 - 22 Type: tandem, Name: SMu-TR-22 - 22 tnp, - SMu1237 psaA, - SMu1231 fabD, - SMu1227 ituA,mycA, - SMu1228 ylbB, - SMu1230 bacT,btsT, - SMu1229 bacT,btsT, - SMu1229 tpn, - SMu1238 SMu1236 SMu1232 SMu1234 SMu1233 SMu1235 SMu1234


LANL Gene ID: SMu1230

GenBank Locus Tag: SMU.1347c

DNA Molecule Name:
1  

Genomic Island ID:
12

GenBank ID:
24379759

 Gene Name:
ylbB  

 Definition:
ABC transporter permease protein

 Cellular Location:
Membrane, Cytoplasm [Evidence]

 Gene Start:
1290627

Gene Stop:
1288285

Gene Length:
2343

Molecular Weight*:
88420

pI*:
10.50

Net Charge*:
41.87

EC:
 

 Functional Class:
Transport and binding proteins; ABC Superfamily: membrane spanning permease  

 Gene Ontology:
Cellular component
  GO:0016020    membrane


 Pathway: pathway table

 Comment:
For other components see SMu1231 (NBD1).


 View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Matches weakly in gapped BLAST to ABC transporters and to membrane protein:residues 1-779 are 22% similar to PsaB in S.mutans (15625441|).

Residues 36-778 are 24% similar to membrane protein in
Clostridium acetobutylicum (15894110|).Residues 203-779 are 25% similar to ABC transporter permease protein from Lactococcus lactis subsp. lactis (15673086|).





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG1003 (3e-46).


 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379759|ref|NP_721714.1|  conserved hypothetical protein...  1429   0.0  
 gi|24379774|ref|NP_721729.1|  hypothetical protein; possible...  1429   0.0  
 gi|109646336|ref|ZP_01370240.1|  protein of unknown function...   299   4e-79
 gi|89894072|ref|YP_517559.1|  hypothetical protein DSY1326 [...   296   4e-78
 gi|114567229|ref|YP_754383.1|  hypothetical protein Swol_171...   264   2e-68
 gi|106894445|ref|ZP_01361564.1|  Protein of unknown function...   242   6e-62
 gi|148642916|ref|YP_001273429.1|  antimicrobial peptide ABC ...   224   2e-56
 gi|150388436|ref|YP_001318485.1|  protein of unknown functio...   216   4e-54
 gi|90962644|ref|YP_536560.1|  ABC transporter permease prote...   209   5e-52
 gi|109646540|ref|ZP_01370444.1|  protein of unknown function...   205   9e-51


InterPro Summary:  InterProScan

InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687 [207-383]T 2.1000026783402498E-20 PF02687 FtsX[600-772]T 9.50001028167257E-15 PF02687 FtsX FtsX
noIPR
unintegrated
unintegrated
SSF89447 [519-593]T 0.004999999999999999 SSF89447 SSF89447 SSF89447


COGS Summary:  COGS Search
BeTs to 13 clades of COG0577
COG name: Predicted permease
Functional Class: R
The phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinx
Number of proteins in this genome belonging to this COG is 7
Blocks Summary:  Blocks Search
***** IPB003838 (DUF214) with a combined E-value of 2.2e-09.
    IPB003838A    667-714
    IPB003838A    275-322


 ProDom Summary:  Protein Domain Search
Residues 3-226 are 22% similar to a (PROTEOME COMPLETE) protein domain (PD213592 which is seen in O28455_ARCFU.

Residues 145-447 are 22% similar to a (TRANSMEMBRANE PROTEOME MG064 MG468) protein domain (PD018584 which is seen in Q9PQH4_UREPA.

Residues 2-251 are 23% similar to a (PROTEOME COMPLETE ABC TRANSPORTER) protein domain (PD401701 which is seen in Q9CGJ2_LACLA.

Residues 254-732 are 25% similar to a (PROTEOME COMPLETE ABC TRANSPORTER) protein domain (PD147912 which is seen in Q9CGJ2_LACLA.


Paralogs:  Local Blast Search
SMu1230 is paralogously related (blast p-value < 1e-3) to SMu1245, SMu1752, SMu1067, SMu1000, all predicted secretion ABC transport permease and SMu0787, a conserved hypothetical.

Pfam Summary:  Pfam Search
Residues 207 to 383 (E-value = 1.7e-23) place SMu1230 in the FtsX family which is described as Predicted permease (PF02687)
Residues 600 to 772 (E-value = 1.3e-17) place SMu1230 in the FtsX family which is described as Predicted permease (PF02687)

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable  
1  
43
transmembrane  
20  
36
transmembrane  
262  
278
transmembrane  
355  
371
transmembrane  
428  
444
transmembrane  
651  
667
transmembrane  
710  
726
transmembrane  
747  
763

Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MKILLKKLFRDIRTNIAQFITIILIVSIGSFLFVGLSSVASSLRDYTKNY
YHDYHLSDATVNFISLTSKKIDAIKDKYTNIQEAEGRVNFEGKQTFKNYS
SALTISSFSPTSKLNRSYIVQGRKKLNNNEILLDSDYIKAHHYKMNDSIQ
IQINSKKFTFKIAGIIENPEFVMKVSGNNLTPEPQKFGIGYITEQKAFDI
SKKNHSYNQLLLKIKGNNSKKVLQKLSEDYDTTYISGLVTTESSNYTNLK
SLITTDESLSRVIPILFFIVAAVITFISMTRLIQQNRVQTGIMRSLGKRI
RYIRSYYLFYTLLTSSIGTFIGSVLAYFAFTDIGEAQVSSLYALPNYHVK
IELQSLIPSFCLVLLFGLLAIYFSTRKVLKERPANLIRQEPPKNIKGILL
ERIPFLWRYLSYGSKYVIRNIFLNKIRFCLNLLGVALSFLMIILAFGYYN
AMTTVVNTEINDVNTYNISIISPKINSIQDKLSNNPHLKFEKLDIQKLEL
GQGNNSIATTLYASSQKEHFMKVYKKNGQELSHYSNGIVIPKVYANKLHL
KIGDKVRLAFSNTQQSPIKVRVTAISTQYSSKFIVADADYLKEQGVTLHP
SMLLIQKGKNSNEKTSQLIQSAKVIDKDLTYTTKKDVRSNMNAILSTTFP
MVVLFLICAMSLTVATIYNISSINIFDRTRDIATLKVLGYSKNKVNNLIF
KENIIISCVAMGFALPVGHSLFILFINAMTTELQAMPNELPYWCFALAIV
CVLGITILSNLLLHRKVKAIDMIEGLKSIE

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAAATTTTATTAAAAAAATTATTTAGAGATATTCGTACCAATATAGC
ACAATTTATAACAATTATTTTAATTGTTTCTATTGGTTCCTTTCTTTTTG
TTGGCTTGTCTAGTGTTGCCAGTAGCTTAAGAGATTATACAAAAAACTAC
TATCATGACTATCACCTGAGCGATGCAACAGTAAATTTTATTTCGCTTAC
TTCAAAAAAGATAGATGCTATTAAAGATAAATATACTAATATACAAGAGG
CAGAGGGACGTGTTAATTTTGAAGGAAAACAAACTTTCAAAAATTATAGC
TCTGCTTTAACAATTTCTAGCTTTTCTCCTACTTCTAAGCTAAATCGTTC
TTATATTGTGCAGGGAAGAAAAAAACTCAATAACAACGAAATCTTGTTAG
ATAGTGATTATATTAAGGCGCATCATTATAAGATGAATGATTCTATACAA
ATTCAAATCAATAGTAAGAAGTTCACTTTTAAAATCGCAGGAATTATTGA
GAATCCTGAGTTTGTTATGAAAGTATCAGGAAATAATTTAACACCTGAGC
CTCAAAAATTCGGCATAGGTTATATCACAGAACAGAAAGCTTTCGATATT
TCAAAAAAAAATCATTCTTATAATCAACTTCTTTTAAAGATTAAGGGTAA
TAATAGTAAAAAGGTTCTTCAAAAACTTTCTGAAGATTATGATACAACTT
ATATTTCTGGTCTTGTTACAACTGAATCAAGTAACTACACTAATTTAAAA
AGTTTAATCACAACCGATGAAAGTCTTAGCAGGGTTATTCCTATCTTATT
CTTTATTGTTGCTGCGGTCATTACTTTTATTTCAATGACACGGCTCATAC
AACAAAACAGAGTACAGACAGGAATCATGCGCTCCTTAGGTAAAAGAATT
AGATACATAAGAAGTTATTACTTATTCTATACTTTATTGACAAGTTCTAT
TGGGACATTTATTGGAAGTGTGCTAGCTTACTTTGCTTTTACTGATATTG
GTGAAGCTCAAGTATCTTCATTGTATGCTTTACCAAATTATCATGTGAAG
ATTGAGTTACAATCTTTGATTCCTTCTTTTTGCCTTGTTTTATTATTTGG
TTTATTAGCTATTTATTTTTCAACGCGAAAAGTTTTAAAAGAGAGACCAG
CAAATTTGATTAGACAGGAGCCTCCTAAAAATATTAAAGGTATTTTATTA
GAAAGGATTCCTTTCTTATGGCGGTATTTATCTTATGGAAGTAAATATGT
TATTCGGAATATTTTCTTAAATAAAATACGTTTTTGCCTTAATTTACTAG
GTGTTGCTTTATCTTTTTTGATGATTATATTAGCTTTTGGTTATTATAAC
GCTATGACTACTGTAGTTAATACGGAAATTAATGATGTCAATACTTATAA
TATTAGTATTATTTCTCCTAAAATTAACTCTATACAAGATAAATTATCAA
ATAATCCACATCTAAAGTTTGAAAAGTTAGATATTCAAAAGTTAGAACTT
GGACAAGGAAATAATAGTATTGCAACGACTTTATATGCTAGTAGTCAAAA
AGAGCATTTTATGAAAGTTTATAAGAAAAACGGTCAAGAATTGTCTCACT
ATTCAAATGGCATTGTCATACCAAAGGTTTATGCTAATAAGCTTCATTTA
AAAATTGGGGATAAAGTAAGATTAGCCTTTTCAAATACTCAACAATCTCC
CATAAAAGTTAGAGTAACAGCCATATCAACCCAATATTCTTCTAAATTTA
TTGTTGCTGACGCTGACTATTTGAAAGAACAAGGCGTTACCCTTCACCCC
TCAATGCTATTAATCCAAAAAGGAAAAAATAGTAATGAAAAAACATCCCA
ATTAATTCAATCGGCCAAAGTTATTGATAAGGATTTAACTTATACAACTA
AAAAGGATGTTCGATCAAATATGAATGCTATTTTATCAACGACATTTCCA
ATGGTTGTTCTATTTCTTATTTGTGCCATGTCATTAACAGTAGCGACTAT
TTATAATATTTCATCTATTAATATTTTTGATCGAACTAGAGATATTGCCA
CACTCAAAGTGTTAGGCTACTCTAAAAATAAAGTGAATAACCTTATTTTT
AAGGAAAATATAATTATTTCTTGTGTAGCTATGGGCTTTGCTTTACCTGT
CGGTCATTCGCTCTTTATCCTTTTTATTAACGCTATGACGACAGAACTGC
AGGCTATGCCGAACGAATTACCATATTGGTGTTTTGCTTTAGCTATTGTC
TGTGTTTTAGGAATCACCATTTTATCAAATTTACTTTTGCATCGAAAGGT
TAAAGCCATTGATATGATTGAGGGGTTAAAGAGTATTGAATAA

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy