Reference SNP(refSNP) Cluster Report: rs6062317

Reference SNP(refSNP) Cluster Report: rs6062317

refSNP ID: rs6062317
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	114/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_025224.2:c.937+162C>T
NT_011333.5:g.1157642G>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss8377845 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6062317 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss8377845	SC_SNP\|NT_011333.5_1157642	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	04/17/03	10/30/04	114	Genomic	unknown
ss66686805	ILLUMINA\|HumanHap300v1.1_rs6062317	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	11/09/06	11/09/06	127	Genomic	unknown
ss67439279	ILLUMINA\|HumanHap550v1.1_rs6062317	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	11/14/06	11/14/06	127	Genomic	unknown
ss67792757	ILLUMINA\|HumanHap650Yv1.0_rs6062317	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	11/14/06	11/14/06	127	Genomic	unknown
ss69247877	PERLEGEN\|PGP13242764	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	01/30/07	03/31/08	127	Genomic	unknown
ss70856672	ILLUMINA\|HumanHap550v3.0__rs6062317	rev/B	C/T	ggaggttgtcgtgaccgctgggaatgcagc	aatgcatctcaaagggcagggcatcaccag	04/20/07	03/31/08	130	Genomic	unknown
ss71443223	ILLUMINA\|HumanHap650Yv3.0_rs6062317	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	04/23/07	04/23/07	127	Genomic	unknown
ss75873787	ILLUMINA\|ILMN_Human_1M_rs6062317	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	08/28/07	08/29/07	129	Genomic	unknown
ss79215613	ILLUMINA\|HumanHap300v2.0_rs6062317	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	04/18/07	11/18/07	130	Genomic	unknown
ss84456615	KRIBB_YJKIM\|KHS715250	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	12/04/07	12/07/07	130	Genomic	unknown
ss91757279	BCMHGSC_JDW\|JWB-1464771	fwd/T	A/G	ctggtgatgccctgccctttgagatgcatt	gctgcattcccagcggtcacgacaacctcc	02/26/08	03/02/08	129	Genomic	unknown

Fasta sequence (Legend)

 GGTCCCCAGG TCAAGGCAAG CTGAGCCACC AAGGACAAAG TACATTCACA TGGTGTTTCC
 ATTCAACATT CACTATAGCA ACAGTGACCA AAGGCAGAAG TCCAGGATGA AAAGCCTGGA
 GCTGAAGGCC ACCCTGGCAA GCGGCCAGTC GAGTTACCCC AGTCAGGGCT CATGGGAGGG
 TCCCACAGGC CAGGGGAAGC CGACCCTGCA GGCCACGCCC TCACCAGGGC TGAGGGGTCC
 CCTCCCGGTG TCACCCACCC CCCGGCTCAC GTCCCTGTGG CTTCAGAGGG GCCCAGCCCA
 GGCAGCCCCC GTGTGTGGGT GACACCAGTG CCGTGCTGAT GGGGACAGAT ACACAGGGTC
 TCCAAGGGCC CTGGTGATGC CCTGCCCTTT GAGATGCATT
 R
 GCTGCATTCC CAGCGGTCAC GACAACCTCC TGTAAGAGGA AGTGACCCTA GAAAGCCACC
 AGTGTGAGCC TGGACATGCG TCACTGCCTC CGCACAGCAC GCGGCCGTGA GGCCTGGACA
 CACTGGGGCA GCTGAGCCCC CGTAACGAGT GAAAGGCTTA CTTGAGTCTC GGCTGCTGAA
 CGGCCACCCC GACGTCGGCA GGAAGGACGG CACCGGGGAG CTGGCCCGGC TGTCATCTTC
 CACCTGCTGT GTGATGTGCC GGACGGTCTC TTTGTTTTTC CGATTCTTCC TTCGGCCCGT
 GGGCTGCCAG GCATCACCAG CACTCTGCTC TGAGAAAGAG TTCTGTACTG CACCGTCCTT
 GGCAGAAGGC AGCTCGCTCC CTCCGTACTG AGACGGTGAA

GeneView

GeneView via analysis of contig annotation: ZBTB46 zinc finger and BTB domain containing 46

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_011333->NM_025224

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_011333->NM_025224->NP_079500	1157642	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs6062317 maps exactly once on NCBI human chromosome 20

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
20	NW_927339.1	32608301	59105192	plus	G	alt_assembly_1	Celera	Celera	view	400
20	NW_001838671.1	1174539	59153885	plus	G	alt_assembly_8	HuRef	HuRef	view	400
20	NT_011333.5	1157642	61891456	plus	G	ref_assembly	reference	reference	view	400

NCBI Resource Links

Submitter-Referenced
GenBank
NT_011333

dbSNP Blast Analysis
GenBank HTGS Finished:
AL121845.20

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss69247877	HapMap-CEU	European	120	GF		0.217	0.783		0.108	0.892

	HapMap-HCB	Asian	90	GF		0.022	0.978		0.011	0.989

	HapMap-JPT	Asian	90	GF		0.156	0.844		0.078	0.922

	HapMap-YRI	Sub-Saharan African	120	GF		0.133	0.867		0.067	0.933

ss8377845	HapMap-CEU	European	120	IG	0.050	0.417	0.533	0.527	0.258	0.742

	HapMap-HCB	Asian	90	IG		0.156	0.844	0.584	0.078	0.922

	HapMap-JPT	Asian	86	IG	0.047	0.256	0.698	0.479	0.174	0.826

	HapMap-YRI	Sub-Saharan African	120	IG	0.067	0.433	0.500	0.655	0.283	0.717

Concordant Genotype	Total Sample	A/A	A/G	G/G
ss69247877	187		26	161
ss8377845	187		25	160

RefSNP Genotype Summary	Total Individual	A/A	A/G	G/G
rs6062317	270		26	161

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
151	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA10847	CEPH1334.02	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
151	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA10847	CEPH1334.02	chr20-HapMap-CEU
157	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12144	CEPH1334.10	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
157	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12144	CEPH1334.10	chr20-HapMap-CEU
159	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
159	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	chr20-HapMap-CEU
186	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA06993	CEPH1341.13	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
186	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA06993	CEPH1341.13	chr20-HapMap-CEU
203	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA07348	CEPH1345.02	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
203	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA07348	CEPH1345.02	chr20-HapMap-CEU
214	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA07345	CEPH1345.13	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
214	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA07345	CEPH1345.13	chr20-HapMap-CEU
225	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12043	CEPH1346.11	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
225	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12043	CEPH1346.11	chr20-HapMap-CEU
242	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
242	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	chr20-HapMap-CEU
253	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA11840	CEPH1349.14	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
253	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA11840	CEPH1349.14	chr20-HapMap-CEU
254	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA10856	CEPH1350.01	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
254	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA10856	CEPH1350.01	chr20-HapMap-CEU
255	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA10855	CEPH1350.02	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
255	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA10855	CEPH1350.02	chr20-HapMap-CEU
335	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12707	CEPH1358.01	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
335	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12707	CEPH1358.01	chr20-HapMap-CEU
345	ss8377845	A/A	CSHL-HAPMAP	HapMap-CEU	NA12717	CEPH1358.12	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
345	ss69247877	A/G	CSHL-HAPMAP	HapMap-CEU	NA12717	CEPH1358.12	chr20-HapMap-CEU
348	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
348	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	chr20-HapMap-CEU
361	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA11993	CEPH1362.14	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
361	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA11993	CEPH1362.14	chr20-HapMap-CEU
363	ss8377845	G/G	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
363	ss69247877	A/G	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	chr20-HapMap-CEU
373	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12264	CEPH1375.11	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
373	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12264	CEPH1375.11	chr20-HapMap-CEU
399	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
399	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	chr20-HapMap-CEU
400	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA10831	CEPH1408.02	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
400	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA10831	CEPH1408.02	chr20-HapMap-CEU
409	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12236	CEPH1408.11	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
409	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12236	CEPH1408.11	chr20-HapMap-CEU
410	ss8377845	A/A	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
410	ss69247877	A/G	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	chr20-HapMap-CEU
438	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12248	CEPH1416.11	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
438	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12248	CEPH1416.11	chr20-HapMap-CEU
464	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12003	CEPH1420.09	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
464	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12003	CEPH1420.09	chr20-HapMap-CEU
524	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12740	CEPH1444.02	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
524	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12740	CEPH1444.02	chr20-HapMap-CEU
537	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12752	CEPH1447.01	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
537	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12752	CEPH1447.01	chr20-HapMap-CEU
546	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12761	CEPH1447.10	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
546	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12761	CEPH1447.10	chr20-HapMap-CEU
566	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12802	CEPH1454.02	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
566	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12802	CEPH1454.02	chr20-HapMap-CEU
578	ss8377845	A/A	CSHL-HAPMAP	HapMap-CEU	NA12814	CEPH1454.14	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
578	ss69247877	A/G	CSHL-HAPMAP	HapMap-CEU	NA12814	CEPH1454.14	chr20-HapMap-CEU
579	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12815	CEPH1454.15	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
579	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12815	CEPH1454.15	chr20-HapMap-CEU
611	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12865	CEPH1459.02	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
611	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12865	CEPH1459.02	chr20-HapMap-CEU
620	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12874	CEPH1459.11	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
620	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12874	CEPH1459.11	chr20-HapMap-CEU
621	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12875	CEPH1459.12	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
621	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12875	CEPH1459.12	chr20-HapMap-CEU
636	ss8377845	A/G	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	r23_ch20_CEU_illumina:golden_gate_1.0.0	915332
636	ss69247877	G/G	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	chr20-HapMap-CEU
5135	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19128	YOR077.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5135	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19128	YOR077.03	chr20-HapMap-YRI
5136	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19132	YOR101.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5136	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19132	YOR101.01	chr20-HapMap-YRI
5137	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19131	YOR101.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5137	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19131	YOR101.02	chr20-HapMap-YRI
5147	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19239	YOR117.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5147	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19239	YOR117.03	chr20-HapMap-YRI
5158	ss8377845	A/G	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	r23_ch20_HCB_illumina:golden_gate_1.0.0	915332
5158	ss69247877	G/G	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	chr20-HapMap-HCB
5159	ss8377845	A/G	CSHL-HAPMAP	HapMap-HCB	NA18542	CH18542	r23_ch20_HCB_illumina:golden_gate_1.0.0	915332
5159	ss69247877	G/G	CSHL-HAPMAP	HapMap-HCB	NA18542	CH18542	chr20-HapMap-HCB
5166	ss8377845	A/G	CSHL-HAPMAP	HapMap-HCB	NA18552	CH18552	r23_ch20_HCB_illumina:golden_gate_1.0.0	915332
5166	ss69247877	G/G	CSHL-HAPMAP	HapMap-HCB	NA18552	CH18552	chr20-HapMap-HCB
5169	ss8377845	A/G	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	r23_ch20_HCB_illumina:golden_gate_1.0.0	915332
5169	ss69247877	G/G	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	chr20-HapMap-HCB
5182	ss8377845	A/G	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	r23_ch20_HCB_illumina:golden_gate_1.0.0	915332
5182	ss69247877	G/G	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	chr20-HapMap-HCB
5187	ss8377845	A/G	CSHL-HAPMAP	HapMap-HCB	NA18633	CH18633	r23_ch20_HCB_illumina:golden_gate_1.0.0	915332
5187	ss69247877	G/G	CSHL-HAPMAP	HapMap-HCB	NA18633	CH18633	chr20-HapMap-HCB
5194	ss8377845	A/G	CSHL-HAPMAP	HapMap-JPT	NA18940	JA18940	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5194	ss69247877	G/G	CSHL-HAPMAP	HapMap-JPT	NA18940	JA18940	chr20-HapMap-JPT
5195	ss8377845	G/G	CSHL-HAPMAP	HapMap-JPT	NA18951	JA18951	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5195	ss69247877	A/G	CSHL-HAPMAP	HapMap-JPT	NA18951	JA18951	chr20-HapMap-JPT
5208	ss8377845	A/G	CSHL-HAPMAP	HapMap-JPT	NA18969	JA18969	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5208	ss69247877	G/G	CSHL-HAPMAP	HapMap-JPT	NA18969	JA18969	chr20-HapMap-JPT
5211	ss8377845	A/G	CSHL-HAPMAP	HapMap-JPT	NA18972	JA18972	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5211	ss69247877	G/G	CSHL-HAPMAP	HapMap-JPT	NA18972	JA18972	chr20-HapMap-JPT
5222	ss8377845	A/G	CSHL-HAPMAP	HapMap-JPT	NA18981	JA18981	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5222	ss69247877	G/G	CSHL-HAPMAP	HapMap-JPT	NA18981	JA18981	chr20-HapMap-JPT
5223	ss8377845	A/A	CSHL-HAPMAP	HapMap-JPT	NA18971	JA18971	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5223	ss69247877	G/G	CSHL-HAPMAP	HapMap-JPT	NA18971	JA18971	chr20-HapMap-JPT
5225	ss8377845	A/G	CSHL-HAPMAP	HapMap-JPT	NA18987	JA18987	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5225	ss69247877	G/G	CSHL-HAPMAP	HapMap-JPT	NA18987	JA18987	chr20-HapMap-JPT
5228	ss8377845	A/A	CSHL-HAPMAP	HapMap-JPT	NA18994	JA18994	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5228	ss69247877	A/G	CSHL-HAPMAP	HapMap-JPT	NA18994	JA18994	chr20-HapMap-JPT
5230	ss8377845	A/G	CSHL-HAPMAP	HapMap-JPT	NA18997	JA18997	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5230	ss69247877	G/G	CSHL-HAPMAP	HapMap-JPT	NA18997	JA18997	chr20-HapMap-JPT
5235	ss8377845	A/G	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	r23_ch20_JPT_illumina:golden_gate_1.0.0	915332
5235	ss69247877	G/G	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	chr20-HapMap-JPT
5242	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18508	YOR009.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5242	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18508	YOR009.02	chr20-HapMap-YRI
5247	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18515	YOR013.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5247	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18515	YOR013.01	chr20-HapMap-YRI
5248	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18517	YOR013.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5248	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18517	YOR013.02	chr20-HapMap-YRI
5249	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18516	YOR013.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5249	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18516	YOR013.03	chr20-HapMap-YRI
5252	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18522	YOR016.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5252	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18522	YOR016.03	chr20-HapMap-YRI
5254	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18870	YOR017.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5254	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18870	YOR017.02	chr20-HapMap-YRI
5256	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18854	YOR018.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5256	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18854	YOR018.01	chr20-HapMap-YRI
5257	ss8377845	A/A	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5257	ss69247877	A/G	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	chr20-HapMap-YRI
5261	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18856	YOR023.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5261	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18856	YOR023.03	chr20-HapMap-YRI
5263	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18861	YOR024.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5263	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18861	YOR024.02	chr20-HapMap-YRI
5264	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA18862	YOR024.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5264	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA18862	YOR024.03	chr20-HapMap-YRI
5268	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19094	YOR040.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5268	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19094	YOR040.01	chr20-HapMap-YRI
5269	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19093	YOR040.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5269	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19093	YOR040.02	chr20-HapMap-YRI
5274	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19139	YOR043.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5274	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19139	YOR043.01	chr20-HapMap-YRI
5275	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19137	YOR043.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5275	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19137	YOR043.02	chr20-HapMap-YRI
5279	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19200	YOR045.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5279	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19200	YOR045.03	chr20-HapMap-YRI
5281	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19172	YOR047.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5281	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19172	YOR047.02	chr20-HapMap-YRI
5286	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5286	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	chr20-HapMap-YRI
5287	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19209	YOR050.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5287	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19209	YOR050.02	chr20-HapMap-YRI
5288	ss8377845	A/A	CSHL-HAPMAP	HapMap-YRI	NA19210	YOR050.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5288	ss69247877	A/G	CSHL-HAPMAP	HapMap-YRI	NA19210	YOR050.03	chr20-HapMap-YRI
5291	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19207	YOR051.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5291	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19207	YOR051.03	chr20-HapMap-YRI
5295	ss8377845	A/A	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5295	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	chr20-HapMap-YRI
5296	ss8377845	A/A	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5296	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	chr20-HapMap-YRI
5300	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19119	YOR060.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5300	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19119	YOR060.03	chr20-HapMap-YRI
5303	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19141	YOR071.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5303	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19141	YOR071.03	chr20-HapMap-YRI
5304	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19154	YOR072.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5304	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19154	YOR072.01	chr20-HapMap-YRI
5306	ss8377845	A/A	CSHL-HAPMAP	HapMap-YRI	NA19153	YOR072.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5306	ss69247877	A/G	CSHL-HAPMAP	HapMap-YRI	NA19153	YOR072.03	chr20-HapMap-YRI
5308	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19143	YOR074.02	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5308	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19143	YOR074.02	chr20-HapMap-YRI
5309	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19144	YOR074.03	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5309	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19144	YOR074.03	chr20-HapMap-YRI
5310	ss8377845	A/G	CSHL-HAPMAP	HapMap-YRI	NA19129	YOR077.01	r23_ch20_YRI_illumina:golden_gate_1.0.0	915332
5310	ss69247877	G/G	CSHL-HAPMAP	HapMap-YRI	NA19129	YOR077.01	chr20-HapMap-YRI

Genotype data submitted for	270	samples from	270	individuals	Individual with multiple genotypes submission:	270

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .