NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs37800568          
refSNP ID: rs37800568
Organism:mouse (Mus musculus)
Molecule Type:Genomic
Created/Updated in build:126/128
Map to Genome Build:37.1
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Strain:not submitted
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss50588808 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs37800568 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss50588808PERLEGEN|NES13656015fwd/TA/Gatcaagcaggatttccaggaaggtggagtcgcaacaacgccatttcctcagtgcaggctg02/10/0602/10/06126Genomic100 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs37800568|allelePos=101|totalLen=201|taxid=10090|snpclass=1|alleles='A/G'|mol=Genomic|build=126
 GCCCAGCCTG TGCCCAGGAG GCATGCAGCC TGAGTCAGAG ACAGCACAGA GCAGTAGCCT
 CAGCTCCAGG ATCAAGCAGG ATTTCCAG
 GAAGGTGGAG TC
 R
 GCAACAACGC CA
 TTTCCTCAGT GCAGGCTGGG TCAGTGGAGC CCAGAACTCC ATGGAAGTAG GTGCTGCATT
 TGTAGAGACC AAGGTTATCT CCTCTAAC

  GeneView back to top
GeneView via analysis of contig annotation: Lrp5 low density lipoprotein receptor-related protein 5
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
CeleraNW_001030639->NM_008513
svfunction
C57BL/6JNT_082868->NM_008513
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
CeleraNW_001030639->NM_008513->NP_032539466064reverseintron
C57BL/6JNT_082868->NM_008513->NP_032539593930reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs37800568 maps exactly once on NCBI mouse chromosome 19
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
19NW_001030639.14660643466064plusGalt_assembly_1CeleraCeleraview100
19NT_082868.65939303593930plusGref_strainC57BL/6JC57BL/6Jview100

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000085.2
dbSNP Blast Analysis
GenBank HTGS Finished:
AC112990.7

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
G/G
ss50588808MM_PANEL2 30IG 2 13

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
-1.000+/-0151500

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqUNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .