BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract


RepeatMasker repeats found in sequence:
No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  A05A12_CONSENSUS
        (541 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 3 Sequences     : less than 3 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 686 132 |============================================
   6310 554  81 |===========================
   3980 473 116 |======================================
   2510 357  67 |======================
   1580 290  65 |=====================
   1000 225  33 |===========
    631 192  36 |============
    398 156  12 |====
    251 144   6 |==
    158 138   4 |=
    100 134   8 |==
   63.1 126   2 |:
   39.8 124   1 |:
   25.1 123   0 |
   15.8 123   1 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 122  <<<<<<<<<<<<<<<<<
   10.0 122   0 |
   6.31 122   0 |
   3.98 122   0 |
   2.51 122   0 |
   1.58 122   0 |
   1.00 122   1 |:
   0.63 121   0 |
   0.40 121   0 |
   0.25 121   0 |
   0.16 121   0 |
   0.10 121   1 |:
  0.063 120   0 |
  0.040 120   0 |
  0.025 120   0 |
  0.016 120   0 |
  0.010 120   1 |:
 0.0063 119   0 |
 0.0040 119   1 |:
 0.0025 118   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|129586|sp|P19143|PAL3_PHAVUPHENYLALANINE AMMONIA-L... +2   738  1.5e-80   2
gi|228615|prf||1807329BPhe ammonia lyase [Phaseolus v... +2   738  1.5e-80   2
gi|1172002|sp|P45732|PALY_STYHUPHENYLALANINE AMMONIA-... +2   697  8.6e-76   2
gi|3334286|sp|O23924|PALY_DIGLAPHENYLALANINE AMMONIA-... +2   694  6.0e-75   2
gi|1171997|sp|P45733|PAL3_TOBACPHENYLALANINE AMMONIA-... +2   693  7.6e-75   2
gi|6647711|sp|O64963|PAL1_PRUAVPHENYLALANINE AMMONIA-... +2   690  1.6e-74   2
gi|1172003|sp|P45734|PALY_TRISUPHENYLALANINE AMMONIA-... +2   684  2.0e-74   2
gi|741010|prf||2006271APhe ammonia lyase [Trifolium s... +2   684  2.0e-74   2
gi|7208616|gb|AAF40224.1|AF237955_1(AF237955) phenyla... +2   684  2.0e-74   2
gi|400725|sp|P31425|PAL1_SOLTUPHENYLALANINE AMMONIA-L... +2   688  2.6e-74   2
gi|400726|sp|P31426|PAL2_SOLTUPHENYLALANINE AMMONIA-L... +2   688  2.6e-74   2
gi|129594|sp|P25872|PAL1_TOBACPHENYLALANINE AMMONIA-L... +2   687  3.3e-74   2
gi|129590|sp|P27990|PALY_MEDSAPHENYLALANINE AMMONIA-L... +2   682  3.3e-74   2
gi|3513758|gb|AAC33966.1|(AF081215) phenylalanine amm... +2   686  4.2e-74   2
gi|548454|sp|P35511|PAL1_LYCESPHENYLALANINE AMMONIA-L... +2   684  6.8e-74   2
gi|5332353|gb|AAA34179.2|(M83314) phenylalanine ammon... +2   684  6.8e-74   2
gi|266731|sp|Q01861|PAL1_PEAPHENYLALANINE AMMONIA-LYA... +2   679  6.8e-74   2
gi|417444|sp|Q04593|PAL2_PEAPHENYLALANINE AMMONIA-LYA... +2   679  6.8e-74   2
gi|738926|prf||2001451APhe ammonia lyase [Pisum sativum] +2   679  6.8e-74   2
gi|4808126|emb|CAB42793.1|(AJ238753) phenylalanine-am... +2   679  6.8e-74   2
gi|4808128|emb|CAB42794.1|(AJ238754) phenylalanine-am... +2   679  6.8e-74   2
gi|3024361|sp|Q42858|PAL2_IPOBAPHENYLALANINE AMMONIA-... +2   683  8.6e-74   2
gi|3123241|sp|P35513|PAL2_TOBACPHENYLALANINE AMMONIA-... +2   682  1.1e-73   2
gi|6598547|gb|AAD18156.2|(AC006260) phenylalanine amm... +2   677  1.1e-73   2
gi|7798554|dbj|BAA95629.1|(AB042520) phenylalanine am... +2   681  1.4e-73   2
gi|1172001|sp|P45730|PALY_POPTRPHENYLALANINE AMMONIA-... +2   676  1.4e-73   2
gi|129587|sp|P26600|PAL5_LYCESPHENYLALANINE AMMONIA-L... +2   680  1.8e-73   2
gi|322743|pir||A44133phenylalanine ammonia-lyase (EC ... +2   680  1.8e-73   2
gi|1172004|sp|P45735|PALY_VITVIPHENYLALANINE AMMONIA-... +2   675  1.8e-73   2
gi|129585|sp|P19142|PAL2_PHAVUPHENYLALANINE AMMONIA-L... +2   680  2.3e-73   2
gi|1171998|sp|P45726|PALY_CAMSIPHENYLALANINE AMMONIA-... +2   679  2.3e-73   2
gi|1076275|pir||S52632phenylalanine ammonia-lyase (EC... +2   674  2.3e-73   2
gi|129584|sp|P27991|PAL1_SOYBNPHENYLALANINE AMMONIA-L... +2   672  3.7e-73   2
gi|1171991|sp|P35510|PAL1_ARATHPHENYLALANINE AMMONIA-... +2   672  3.7e-73   2
gi|5566388|gb|AAD45384.1|(AF165998) phenylalanine amm... +2   676  4.7e-73   2
gi|3024360|sp|Q42667|PALY_CITLIPHENYLALANINE AMMONIA-... +2   674  7.7e-73   2
gi|81875|pir||A24727phenylalanine ammonia-lyase (EC 4... +2   669  7.7e-73   2
gi|129583|sp|P07218|PAL1_PHAVUPHENYLALANINE AMMONIA-L... +2   669  7.7e-73   2
gi|1171999|sp|P45727|PALY_PERAEPHENYLALANINE AMMONIA-... +2   673  9.8e-73   2
gi|9910836|sp|Q9SMK9|PAL2_CICARPHENYLALANINE AMMONIA-... +2   673  9.8e-73   2
gi|1171993|sp|P45724|PAL2_ARATHPHENYLALANINE AMMONIA-... +2   667  1.2e-72   2
gi|11269670|pir||T46172phenylalanine ammonia-lyase (E... +2   667  1.2e-72   2
gi|5690433|gb|AAD47085.1|AF167487_1(AF167487) phenyla... +2   672  1.6e-72   2
gi|3334285|sp|O23865|PAL1_DAUCAPHENYLALANINE AMMONIA-... +2   671  1.6e-72   2
gi|2285893|dbj|BAA21643.1|(D30656) phenylalanine ammo... +2   665  2.0e-72   2
gi|129582|sp|P24481|PAL1_PETCRPHENYLALANINE AMMONIA-L... +2   669  2.6e-72   2
gi|1220270|emb|CAA34715.1|(X16772) phenylalanine ammo... +2   669  2.6e-72   2
gi|2118318|pir||S60043phenylalanine ammonia-lyase (EC... +2   669  2.6e-72   2
gi|3024359|sp|Q42609|PALY_BROFIPHENYLALANINE AMMONIA-... +2   664  2.6e-72   2
gi|1171996|sp|P45729|PAL3_PETCRPHENYLALANINE AMMONIA-... +2   667  4.2e-72   2



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 2 Hits
gi|129586              |     _____________________________________________
gi|228615              |     _____________________________________________
gi|1172002             |     _____________________________________________
gi|3334286             |     _____________________________________________
gi|1171997             |     ____________________________________________ 
gi|6647711             |     _____________________________________________
gi|1172003             |     ____________________________________________ 
gi|741010              |     ____________________________________________ 
gi|7208616             |     _____________________________________________
gi|400725              |     ____________________________________________ 
gi|400726              |     ____________________________________________ 
gi|129594              |     ____________________________________________ 
gi|129590              |     ____________________________________________ 
gi|3513758             |     ____________________________________________ 
gi|548454              |     ____________________________________________ 
gi|5332353             |     ____________________________________________ 
gi|266731              |     _____________________________________________
gi|417444              |     _____________________________________________
gi|738926              |     _____________________________________________
gi|4808126             |     ____________________________________________ 
gi|4808128             |     ____________________________________________ 
gi|3024361             |     ____________________________________________ 
gi|3123241             |     ____________________________________________ 
gi|6598547             |     _____________________________________________
gi|7798554             |     ____________________________________________ 
gi|1172001             |     _____________________________________________
gi|129587              |     ____________________________________________ 
gi|322743              |     ____________________________________________ 
gi|1172004             |     ____________________________________________ 
gi|129585              |     _____________________________________________
gi|1171998             |     ____________________________________________ 
gi|1076275             |     ____________________________________________ 
gi|129584              |     _____________________________________________
gi|1171991             |     _____________________________________________
gi|5566388             |     _____________________________________________
gi|3024360             |     ____________________________________________ 
gi|81875               |     _____________________________________________
gi|129583              |     _____________________________________________
gi|1171999             |     ____________________________________________ 
gi|9910836             |     ____________________________________________ 
gi|1171993             |     _____________________________________________
gi|11269670            |     _____________________________________________
gi|5690433             |     _____________________________________________
gi|3334285             |     ____________________________________________ 
gi|2285893             |     _____________________________________________
gi|129582              |     ____________________________________________ 
gi|1220270             |     ____________________________________________ 
gi|2118318             |     ____________________________________________ 
gi|3024359             |     ____________________________________________ 
gi|1171996             |     ____________________________________________ 
Prosite Hits:                          ____                               
                        __________________________________________________
Query sequence:        |             |             |             |        | 181
                       0            50           100           150
__________________
Prosite hits:
   PROKAR_LIPOPROTEIN   Prokaryotic membrane lipoprotein lipid a 58..68
__________________


Locus_ID                Frame 1 Hits
gi|129586              |______                                            
gi|228615              |______                                            
gi|1172002             |______                                            
gi|3334286             |______                                            
gi|1171997             |______                                            
gi|6647711             |______                                            
gi|1172003             |______                                            
gi|741010              |______                                            
gi|7208616             |______                                            
gi|400725              |______                                            
gi|400726              |______                                            
gi|129594              |______                                            
gi|129590              |______                                            
gi|3513758             |______                                            
gi|548454              |______                                            
gi|5332353             |______                                            
gi|266731              |______                                            
gi|417444              |______                                            
gi|738926              |______                                            
gi|4808126             |______                                            
gi|4808128             |______                                            
gi|3024361             |______                                            
gi|3123241             |______                                            
gi|6598547             |______                                            
gi|7798554             |______                                            
gi|1172001             |______                                            
gi|129587              |______                                            
gi|322743              |______                                            
gi|1172004             |______                                            
gi|129585              |______                                            
gi|1171998             |______                                            
gi|1076275             |______                                            
gi|129584              |______                                            
gi|1171991             |______                                            
gi|5566388             |______                                            
gi|3024360             |______                                            
gi|81875               |______                                            
gi|129583              |______                                            
gi|1171999             |______                                            
gi|9910836             |______                                            
gi|1171993             |______                                            
gi|11269670            |______                                            
gi|5690433             |______                                            
gi|3334285             |______                                            
gi|2285893             |______                                            
gi|129582              |______                                            
gi|1220270             |______                                            
gi|2118318             |______                                            
gi|3024359             |______                                            
gi|1171996             |______                                            
                        __________________________________________________
Query sequence:        |             |             |             |        | 181
                       0            50           100           150


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 72 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|129586|sp|P19143|PAL3_PHAVU  PHENYLALANINE AMMONIA-LYASE CLASS III
            >gi|81878|pir||S04128 phenylalanine ammonia-lyase (EC 4.3.1.5)
            class III - kidney bean
            Length = 710

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 710
                       0        150        300       450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 96..140
   BLOCKS               BL00488B: Phenylalanine and histidine am 172..225
   BLOCKS               BL00488C: Phenylalanine and histidine am 276..323
   BLOCKS               BL00488D: Phenylalanine and histidine am 356..409
   BLOCKS               BL00488E: Phenylalanine and histidine am 431..485
   BLOCKS               BL00488F: Phenylalanine and histidine am 489..541
   BLOCKS               BL00488G: Phenylalanine and histidine am 549..601
   BLOCKS               BL00488H: Phenylalanine and histidine am 637..686
   DOMO                 DM01898: PHENYLALANINEANDHISTIDINEAMMONI 1..47
   DOMO                 DM00721: PHENYLALANINEANDHISTIDINEAMMONI 49..561
   Entrez               active site: BY SIMILARITY.              199
   PFAM                 PAL: Phenylalanine and histidine ammonia 20..701
   PRODOM               PD143663: PAL3_PHAVU                     1..25
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      27..49
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      53..565
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      567..663
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      667..692
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 194..209
__________________


  Plus Strand HSPs:

 Score = 738 (259.8 bits), Expect = 1.5e-80, Sum P(2) = 1.5e-80
 Identities = 148/160 (92%), Positives = 151/160 (94%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDNARLAVASIGKLIFAQFTEL NDLYNNGLPSNLS GRNPSL
Sbjct:   387 NKAVSGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELANDLYNNGLPSNLSVGRNPSL 446

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFKASEVAMAAYCSELQYLANPVTSHVQS EQHNQDVNSLGLISALKTVEA+ ILKLM
Sbjct:   447 DYGFKASEVAMAAYCSELQYLANPVTSHVQSTEQHNQDVNSLGLISALKTVEAIEILKLM 506

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLITE 541
             SSTYLVALCQAIDLRHLEE FK TVKNTVSR A KTL TE
Sbjct:   507 SSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLTTE 546

 Score = 99 (34.8 bits), Expect = 1.5e-80, Sum P(2) = 1.5e-80
 Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDVTR
Sbjct:   367 KSIEREINSVNDNPLIDVTR 386


 >gi|228615|prf||1807329B  Phe ammonia lyase [Phaseolus vulgaris]
            Length = 711

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 711
                       0        150        300       450        600

  Plus Strand HSPs:

 Score = 738 (259.8 bits), Expect = 1.5e-80, Sum P(2) = 1.5e-80
 Identities = 148/160 (92%), Positives = 151/160 (94%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDNARLAVASIGKLIFAQFTEL NDLYNNGLPSNLS GRNPSL
Sbjct:   387 NKAVSGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELANDLYNNGLPSNLSVGRNPSL 446

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFKASEVAMAAYCSELQYLANPVTSHVQS EQHNQDVNSLGLISALKTVEA+ ILKLM
Sbjct:   447 DYGFKASEVAMAAYCSELQYLANPVTSHVQSTEQHNQDVNSLGLISALKTVEAIEILKLM 506

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLITE 541
             SSTYLVALCQAIDLRHLEE FK TVKNTVSR A KTL TE
Sbjct:   507 SSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLTTE 546

 Score = 99 (34.8 bits), Expect = 1.5e-80, Sum P(2) = 1.5e-80
 Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDVTR
Sbjct:   367 KSIEREINSVNDNPLIDVTR 386


 >gi|1172002|sp|P45732|PALY_STYHU  PHENYLALANINE AMMONIA-LYASE
            >gi|556424|gb|AAA99500.1| (L36822) phenylalanine ammonia lyase
            [Stylosanthes humilis]
            Length = 715

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 715
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 99..143
   BLOCKS               BL00488B: Phenylalanine and histidine am 175..228
   BLOCKS               BL00488C: Phenylalanine and histidine am 279..326
   BLOCKS               BL00488D: Phenylalanine and histidine am 360..413
   BLOCKS               BL00488E: Phenylalanine and histidine am 435..489
   BLOCKS               BL00488F: Phenylalanine and histidine am 493..545
   BLOCKS               BL00488G: Phenylalanine and histidine am 553..605
   BLOCKS               BL00488H: Phenylalanine and histidine am 641..690
   Entrez               active site: BY SIMILARITY.              202
   PFAM                 PAL: Phenylalanine and histidine ammonia 24..705
   PRODOM               PD143668: PALY_STYHU                     1..29
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      31..52
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      55..569
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      571..667
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      669..696
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 197..212
__________________


  Plus Strand HSPs:

 Score = 697 (245.4 bits), Expect = 8.6e-76, Sum P(2) = 8.6e-76
 Identities = 137/159 (86%), Positives = 147/159 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLAVASIGKL+FAQF+ELVND YNNGLPSNLSA RNPSL
Sbjct:   391 NKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSL 450

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSLGLISA KT EAV ILKLM
Sbjct:   451 DYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISARKTNEAVEILKLM 510

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             S TYL+ALCQAIDLRHLEEN K TVKNTVS+ A++TL T
Sbjct:   511 SPTYLIALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTT 549

 Score = 95 (33.4 bits), Expect = 8.6e-76, Sum P(2) = 8.6e-76
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   371 KSIEREINSVNDNPLIDVSR 390


 >gi|3334286|sp|O23924|PALY_DIGLA  PHENYLALANINE AMMONIA-LYASE
            >gi|2631995|emb|CAA05251.1| (AJ002221) phenylalanine ammonia lyase
            [Digitalis lanata]
            Length = 713

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 713
                       0        150       300        450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 96..140
   BLOCKS               BL00488B: Phenylalanine and histidine am 172..225
   BLOCKS               BL00488C: Phenylalanine and histidine am 277..324
   BLOCKS               BL00488D: Phenylalanine and histidine am 358..411
   BLOCKS               BL00488E: Phenylalanine and histidine am 433..487
   BLOCKS               BL00488F: Phenylalanine and histidine am 491..543
   BLOCKS               BL00488G: Phenylalanine and histidine am 551..603
   BLOCKS               BL00488H: Phenylalanine and histidine am 639..688
   Entrez               active site: BY SIMILARITY.              199
   PFAM                 PAL: Phenylalanine and histidine ammonia 21..703
   PRODOM               PD143665: PALY_DIGLA                     1..26
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      28..50
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      52..567
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      569..665
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      667..694
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 194..209
__________________


  Plus Strand HSPs:

 Score = 694 (244.3 bits), Expect = 6.0e-75, Sum P(2) = 6.0e-75
 Identities = 133/159 (83%), Positives = 150/159 (94%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN+RLA+ASIGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   389 NKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 448

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK SE+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KTVEA+ ILKLM
Sbjct:   449 DYGFKGSEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTVEALDILKLM 508

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SSTYLVALCQAIDLRHLEEN + +VKNT+S+ A++TL T
Sbjct:   509 SSTYLVALCQAIDLRHLEENLRLSVKNTISQVAKRTLTT 547

 Score = 90 (31.7 bits), Expect = 6.0e-75, Sum P(2) = 6.0e-75
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   369 KMIEREINSVNDNPLIDVSR 388


 >gi|1171997|sp|P45733|PAL3_TOBAC  PHENYLALANINE AMMONIA-LYASE
            >gi|7437117|pir||T03663 phenylalanine ammonia-lyase (EC 4.3.1.5) -
            common tobacco >gi|633597|emb|CAA55075.1| (X78269) phenylalanine
            ammonia-lyase [Nicotiana tabacum]
            Length = 712

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 712
                       0        150       300        450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 96..140
   BLOCKS               BL00488B: Phenylalanine and histidine am 172..225
   BLOCKS               BL00488C: Phenylalanine and histidine am 276..323
   BLOCKS               BL00488D: Phenylalanine and histidine am 357..410
   BLOCKS               BL00488E: Phenylalanine and histidine am 432..486
   BLOCKS               BL00488F: Phenylalanine and histidine am 490..542
   BLOCKS               BL00488G: Phenylalanine and histidine am 550..602
   BLOCKS               BL00488H: Phenylalanine and histidine am 638..687
   Entrez               active site: BY SIMILARITY.              199
   PFAM                 PAL: Phenylalanine and histidine ammonia 19..702
   PRODOM               PD043217: PAL2(1) PAL3(1)                1..23
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      25..48
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      50..566
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      568..664
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      667..693
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 194..209
__________________


  Plus Strand HSPs:

 Score = 693 (243.9 bits), Expect = 7.6e-75, Sum P(2) = 7.6e-75
 Identities = 135/157 (85%), Positives = 148/157 (94%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDNARLA+ASIGKL+FAQF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   388 NKALHGGNFQGTPIGVSMDNARLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSL 447

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK SE+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT EAV ILKLM
Sbjct:   448 DYGFKGSEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLM 507

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN +  VKNTVS+ A++TL
Sbjct:   508 SSTYLVALCQAIDLRHLEENLRNAVKNTVSQVAKRTL 544

 Score = 90 (31.7 bits), Expect = 7.6e-75, Sum P(2) = 7.6e-75
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   368 KMIEREINSVNDNPLIDVSR 387


 >gi|6647711|sp|O64963|PAL1_PRUAV  PHENYLALANINE AMMONIA-LYASE 1
            >gi|2935294|gb|AAC78457.1| (AF036948) phenylalanine ammonia-lyase;
            PAL1 [Prunus avium]
            Length = 717

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 717
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 690 (242.9 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
 Identities = 133/159 (83%), Positives = 148/159 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   393 NKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 452

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   453 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 512

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+LVALCQAIDLRHLEEN + TVKNTVS+ A++TL T
Sbjct:   513 SSTFLVALCQAIDLRHLEENLRNTVKNTVSQVAKRTLTT 551

 Score = 90 (31.7 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
 Identities = 18/20 (90%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREI+SVNDNPLIDV+R
Sbjct:   373 KSIEREIDSVNDNPLIDVSR 392


 >gi|1172003|sp|P45734|PALY_TRISU  PHENYLALANINE AMMONIA-LYASE
            >gi|484062|gb|AAA17993.1| (M91192) phenylalanine ammonia-lyase
            [Trifolium subterraneum]
            Length = 725

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |         |          |        | 725
                       0        150       300       450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 109..153
   BLOCKS               BL00488B: Phenylalanine and histidine am 185..238
   BLOCKS               BL00488C: Phenylalanine and histidine am 289..336
   BLOCKS               BL00488D: Phenylalanine and histidine am 370..423
   BLOCKS               BL00488E: Phenylalanine and histidine am 445..499
   BLOCKS               BL00488F: Phenylalanine and histidine am 503..555
   BLOCKS               BL00488G: Phenylalanine and histidine am 563..615
   BLOCKS               BL00488H: Phenylalanine and histidine am 651..700
   Entrez               active site: BY SIMILARITY.              212
   PFAM                 PAL: Phenylalanine and histidine ammonia 35..715
   PRODOM               PD018374: PALY(2) PAL1(1) PAL2(1)        1..39
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      41..64
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      66..579
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      581..677
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      679..706
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 207..222
__________________


  Plus Strand HSPs:

 Score = 684 (240.8 bits), Expect = 2.0e-74, Sum P(2) = 2.0e-74
 Identities = 132/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLSA RNPSL
Sbjct:   401 NKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSL 460

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK SE+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+ IL+LM
Sbjct:   461 DYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTKEAIEILQLM 520

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SST+L+ALCQAIDLRHLEEN K +VKNTVS+ A+KTL
Sbjct:   521 SSTFLIALCQAIDLRHLEENLKNSVKNTVSQVAKKTL 557

 Score = 95 (33.4 bits), Expect = 2.0e-74, Sum P(2) = 2.0e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   381 KSIEREINSVNDNPLIDVSR 400


 >gi|741010|prf||2006271A  Phe ammonia lyase [Trifolium subterraneum]
            Length = 725

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
                        __________________________________________________
Database sequence:     |          |         |         |          |        | 725
                       0        150       300       450        600

  Plus Strand HSPs:

 Score = 684 (240.8 bits), Expect = 2.0e-74, Sum P(2) = 2.0e-74
 Identities = 132/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLSA RNPSL
Sbjct:   401 NKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSL 460

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK SE+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+ IL+LM
Sbjct:   461 DYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTKEAIEILQLM 520

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SST+L+ALCQAIDLRHLEEN K +VKNTVS+ A+KTL
Sbjct:   521 SSTFLIALCQAIDLRHLEENLKNSVKNTVSQVAKKTL 557

 Score = 95 (33.4 bits), Expect = 2.0e-74, Sum P(2) = 2.0e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   381 KSIEREINSVNDNPLIDVSR 400


 >gi|7208616|gb|AAF40224.1|AF237955_1  (AF237955) phenylalanine ammonia-lyase 2
            [Rubus idaeus]
            Length = 730

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
                        __________________________________________________
Database sequence:     |          |         |         |          |        | 730
                       0        150       300       450        600

  Plus Strand HSPs:

 Score = 684 (240.8 bits), Expect = 2.0e-74, Sum P(2) = 2.0e-74
 Identities = 132/159 (83%), Positives = 147/159 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLS GR+PSL
Sbjct:   406 NKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGGRDPSL 465

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   466 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 525

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+LVALCQAIDLRHLEEN K TVKNTVS+ A++ L T
Sbjct:   526 SSTFLVALCQAIDLRHLEENLKSTVKNTVSQLAKRVLTT 564

 Score = 95 (33.4 bits), Expect = 2.0e-74, Sum P(2) = 2.0e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   386 KSIEREINSVNDNPLIDVSR 405


 >gi|400725|sp|P31425|PAL1_SOLTU  PHENYLALANINE AMMONIA-LYASE 1
            >gi|100450|pir||S21174 phenylalanine ammonia-lyase (EC 4.3.1.5) 1 -
            potato
            Length = 720

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 720
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 104..148
   BLOCKS               BL00488B: Phenylalanine and histidine am 180..233
   BLOCKS               BL00488C: Phenylalanine and histidine am 284..331
   BLOCKS               BL00488D: Phenylalanine and histidine am 365..418
   BLOCKS               BL00488E: Phenylalanine and histidine am 440..494
   BLOCKS               BL00488F: Phenylalanine and histidine am 498..550
   BLOCKS               BL00488G: Phenylalanine and histidine am 558..610
   BLOCKS               BL00488H: Phenylalanine and histidine am 646..695
   DOMO                 DM01898: PHENYLALANINEANDHISTIDINEAMMONI 1..52
   DOMO                 DM00721: PHENYLALANINEANDHISTIDINEAMMONI 54..570
   Entrez               active site: BY SIMILARITY.              207
   PFAM                 PAL: Phenylalanine and histidine ammonia 26..710
   PRODOM               PD143671: PAL1_SOLTU                     1..30
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      32..55
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      57..574
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      576..672
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      674..700
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 202..217
__________________


  Plus Strand HSPs:

 Score = 688 (242.2 bits), Expect = 2.6e-74, Sum P(2) = 2.6e-74
 Identities = 133/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   396 NKAIHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSL 455

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT EAV ILKLM
Sbjct:   456 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLM 515

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A++TL
Sbjct:   516 SSTYLVALCQAIDLRHLEENLKSVVKNTVSQVAKRTL 552

 Score = 90 (31.7 bits), Expect = 2.6e-74, Sum P(2) = 2.6e-74
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   376 KMIEREINSVNDNPLIDVSR 395


 >gi|400726|sp|P31426|PAL2_SOLTU  PHENYLALANINE AMMONIA-LYASE 2
            >gi|2146801|pir||S70916 phenylalanine ammonia-lyase (EC 4.3.1.5) 2
            - potato  (fragment)
            Length = 590

Frame  2 hits (HSPs):                                    ______________   
Frame  1 hits (HSPs):                                   __                
Annotated Domains:        ________________________________________________
                        __________________________________________________
Database sequence:     |            |            |            |           | 590
                       0          150          300          450
__________________

Annotated Domains:
   Entrez               active site: BY SIMILARITY.              210
   PFAM                 PAL: Phenylalanine and histidine ammonia 30..590
   PROSITE              DNA_LIGASE_A1: ATP-dependent DNA ligase  79..87
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 205..220
__________________


  Plus Strand HSPs:

 Score = 688 (242.2 bits), Expect = 2.6e-74, Sum P(2) = 2.6e-74
 Identities = 133/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   399 NKAIHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSL 458

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT EAV ILKLM
Sbjct:   459 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLM 518

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A++TL
Sbjct:   519 SSTYLVALCQAIDLRHLEENLKSVVKNTVSQVAKRTL 555

 Score = 90 (31.7 bits), Expect = 2.6e-74, Sum P(2) = 2.6e-74
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   379 KMIEREINSVNDNPLIDVSR 398


 >gi|129594|sp|P25872|PAL1_TOBAC  PHENYLALANINE AMMONIA-LYASE
            >gi|2146799|pir||S66343 phenylalanine ammonia-lyase (EC 4.3.1.5) 1
            - common tobacco >gi|170350|gb|AAA34122.1| (M84466) phenylalanine
            ammonia lyase [Nicotiana tabacum] >gi|2564057|dbj|BAA22948.1|
            (AB008200) phenylalanine ammonia-lyase [Nicotiana tabacum]
            Length = 715

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 715
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 99..143
   BLOCKS               BL00488B: Phenylalanine and histidine am 175..228
   BLOCKS               BL00488C: Phenylalanine and histidine am 279..326
   BLOCKS               BL00488D: Phenylalanine and histidine am 360..413
   BLOCKS               BL00488E: Phenylalanine and histidine am 435..489
   BLOCKS               BL00488F: Phenylalanine and histidine am 493..545
   BLOCKS               BL00488G: Phenylalanine and histidine am 553..605
   BLOCKS               BL00488H: Phenylalanine and histidine am 641..690
   Entrez               active site: BY SIMILARITY.              202
   PFAM                 PAL: Phenylalanine and histidine ammonia 21..705
   PRODOM               PD143662: PAL1_TOBAC                     1..25
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      27..49
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      52..564
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      571..667
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      669..696
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 197..212
   PROSITE              PHOSPHOPANTETHEINE: Phosphopantetheine a 53..68
__________________


  Plus Strand HSPs:

 Score = 687 (241.8 bits), Expect = 3.3e-74, Sum P(2) = 3.3e-74
 Identities = 134/157 (85%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDNARLA+ASIGKL+FAQF+ELVND YNNGLPSNL+A RNPSL
Sbjct:   391 NKALHGGNFQGTPIGVSMDNARLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSL 450

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT EAV ILKLM
Sbjct:   451 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLM 510

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A++TL
Sbjct:   511 SSTYLVALCQAIDLRHLEENLKNAVKNTVSQVAKRTL 547

 Score = 90 (31.7 bits), Expect = 3.3e-74, Sum P(2) = 3.3e-74
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   371 KMIEREINSVNDNPLIDVSR 390


 >gi|129590|sp|P27990|PALY_MEDSA  PHENYLALANINE AMMONIA-LYASE
            >gi|99990|pir||S17444 phenylalanine ammonia-lyase (EC 4.3.1.5) 1 -
            alfalfa >gi|19650|emb|CAA41169.1| (X58180) phenylalanine
            ammonia-lyase [Medicago sativa]
            Length = 725

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |         |          |        | 725
                       0        150       300       450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 109..153
   BLOCKS               BL00488B: Phenylalanine and histidine am 185..238
   BLOCKS               BL00488C: Phenylalanine and histidine am 289..336
   BLOCKS               BL00488D: Phenylalanine and histidine am 370..423
   BLOCKS               BL00488E: Phenylalanine and histidine am 445..499
   BLOCKS               BL00488F: Phenylalanine and histidine am 503..555
   BLOCKS               BL00488G: Phenylalanine and histidine am 563..615
   BLOCKS               BL00488H: Phenylalanine and histidine am 651..700
   Entrez               active site: BY SIMILARITY.              212
   Entrez               Domain: POLY-ASN.                        24..27
   PFAM                 PAL: Phenylalanine and histidine ammonia 34..715
   PRODOM               PD018374: PALY(2) PAL1(1) PAL2(1)        1..38
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      40..63
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      65..579
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      581..677
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      679..706
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 207..222
__________________


  Plus Strand HSPs:

 Score = 682 (240.1 bits), Expect = 3.3e-74, Sum P(2) = 3.3e-74
 Identities = 132/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLSA RNPSL
Sbjct:   401 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSL 460

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLISA KT EA+ IL+LM
Sbjct:   461 DYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKTNEAIEILQLM 520

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SST+L+ALCQAIDLRHLEEN K +VKNTVS+ A+KTL
Sbjct:   521 SSTFLIALCQAIDLRHLEENLKNSVKNTVSQVAKKTL 557

 Score = 95 (33.4 bits), Expect = 3.3e-74, Sum P(2) = 3.3e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   381 KSIEREINSVNDNPLIDVSR 400


 >gi|3513758|gb|AAC33966.1|  (AF081215) phenylalanine ammonia-lyase [Capsicum
            chinense]
            Length = 532

Frame  2 hits (HSPs):                      ________________               
Frame  1 hits (HSPs):                    ___                              
                        __________________________________________________
Database sequence:     |              |             |             |       | 532
                       0            150           300           450

  Plus Strand HSPs:

 Score = 686 (241.5 bits), Expect = 4.2e-74, Sum P(2) = 4.2e-74
 Identities = 133/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   208 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSL 267

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   268 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 327

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A++TL
Sbjct:   328 SSTYLVALCQAIDLRHLEENLKNAVKNTVSQVAKRTL 364

 Score = 90 (31.7 bits), Expect = 4.2e-74, Sum P(2) = 4.2e-74
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   188 KMIEREINSVNDNPLIDVSR 207


 >gi|548454|sp|P35511|PAL1_LYCES  PHENYLALANINE AMMONIA-LYASE (PAL)
            Length = 704

Frame  2 hits (HSPs):                             ____________            
Frame  1 hits (HSPs):                            __                       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 704
                       0        150        300       450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 88..132
   BLOCKS               BL00488B: Phenylalanine and histidine am 164..217
   BLOCKS               BL00488C: Phenylalanine and histidine am 268..315
   BLOCKS               BL00488D: Phenylalanine and histidine am 349..402
   BLOCKS               BL00488E: Phenylalanine and histidine am 424..478
   BLOCKS               BL00488F: Phenylalanine and histidine am 482..534
   BLOCKS               BL00488G: Phenylalanine and histidine am 542..594
   BLOCKS               BL00488H: Phenylalanine and histidine am 630..679
   Entrez               active site: BY SIMILARITY.              191
   PFAM                 PAL: Phenylalanine and histidine ammonia 10..694
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      16..39
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      41..558
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      560..656
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      658..685
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 186..201
__________________


  Plus Strand HSPs:

 Score = 684 (240.8 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 132/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   380 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSL 439

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT +AV ILK+M
Sbjct:   440 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAKAVDILKIM 499

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A++TL
Sbjct:   500 SSTYLVALCQAIDLRHLEENLKSVVKNTVSQVAKRTL 536

 Score = 90 (31.7 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   360 KMIEREINSVNDNPLIDVSR 379


 >gi|5332353|gb|AAA34179.2|  (M83314) phenylalanine ammonia lyase [Lycopersicon
            esculentum]
            Length = 704

Frame  2 hits (HSPs):                             ____________            
Frame  1 hits (HSPs):                            __                       
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 704
                       0        150        300       450        600

  Plus Strand HSPs:

 Score = 684 (240.8 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 132/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   380 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSL 439

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT +AV ILK+M
Sbjct:   440 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAKAVDILKIM 499

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A++TL
Sbjct:   500 SSTYLVALCQAIDLRHLEENLKSVVKNTVSQVAKRTL 536

 Score = 90 (31.7 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   360 KMIEREINSVNDNPLIDVSR 379


 >gi|266731|sp|Q01861|PAL1_PEA  PHENYLALANINE AMMONIA-LYASE 1
            >gi|282927|pir||S25303 phenylalanine ammonia-lyase (EC 4.3.1.5) -
            garden pea >gi|217980|dbj|BAA00885.1| (D10001) phenylalanine
            ammonia-lyase [Pisum sativum] >gi|217982|dbj|BAA00886.1| (D10002)
            phenylalanine ammonia-lyase [Pisum sativum]
            Length = 723

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 723
                       0        150       300        450       600
__________________

Annotated Domains:
   Entrez               active site: BY SIMILARITY.              210
   PFAM                 PAL: Phenylalanine and histidine ammonia 33..713
   PRODOM               PD018374: PALY(2) PAL1(1) PAL2(1)        1..37
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      39..62
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      64..577
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      579..675
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      677..704
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 205..220
__________________


  Plus Strand HSPs:

 Score = 679 (239.0 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 130/159 (81%), Positives = 147/159 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLSA RNPSL
Sbjct:   399 NKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSL 458

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK SE+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+ IL+LM
Sbjct:   459 DYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLM 518

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+L+ALCQA+DLRHLEEN K +VKN VS+ A++TL T
Sbjct:   519 SSTFLIALCQAVDLRHLEENLKNSVKNIVSQVAKRTLTT 557

 Score = 95 (33.4 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   379 KSIEREINSVNDNPLIDVSR 398


 >gi|417444|sp|Q04593|PAL2_PEA  PHENYLALANINE AMMONIA-LYASE 2
            >gi|217984|dbj|BAA00887.1| (D10003) phenylalanine ammonia-lyase
            [Pisum sativum]
            Length = 724

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 724
                       0        150       300        450       600
__________________

Annotated Domains:
   Entrez               active site: BY SIMILARITY.              211
   PFAM                 PAL: Phenylalanine and histidine ammonia 34..714
   PRODOM               PD018374: PALY(2) PAL1(1) PAL2(1)        1..38
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      40..63
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      65..578
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      580..676
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      678..705
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 206..221
__________________


  Plus Strand HSPs:

 Score = 679 (239.0 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 131/159 (82%), Positives = 146/159 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLSA RNPSL
Sbjct:   400 NKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSL 459

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK SE+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+ IL+LM
Sbjct:   460 DYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLM 519

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+L+ALCQAIDLRHLEEN K +VKN VS  A++TL T
Sbjct:   520 SSTFLIALCQAIDLRHLEENLKNSVKNMVSHVAKRTLTT 558

 Score = 95 (33.4 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   380 KSIEREINSVNDNPLIDVSR 399


 >gi|738926|prf||2001451A  Phe ammonia lyase [Pisum sativum]
            Length = 723

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 723
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 679 (239.0 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 130/159 (81%), Positives = 147/159 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLSA RNPSL
Sbjct:   399 NKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSL 458

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK SE+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+ IL+LM
Sbjct:   459 DYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLM 518

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+L+ALCQA+DLRHLEEN K +VKN VS+ A++TL T
Sbjct:   519 SSTFLIALCQAVDLRHLEENLKNSVKNIVSQVAKRTLTT 557

 Score = 95 (33.4 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   379 KSIEREINSVNDNPLIDVSR 398


 >gi|4808126|emb|CAB42793.1|  (AJ238753) phenylalanine-ammonia lyase [Citrus
            clementina x Citrus reticulata]
            Length = 721

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 721
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 679 (239.0 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 131/157 (83%), Positives = 146/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   397 NKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 456

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   457 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 516

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SST+LVALCQAIDLRHLEEN K TVK+TVS+ A+K L
Sbjct:   517 SSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVL 553

 Score = 95 (33.4 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   377 KSIEREINSVNDNPLIDVSR 396


 >gi|4808128|emb|CAB42794.1|  (AJ238754) phenylalanine-ammonia lyase [Citrus
            clementina x Citrus reticulata]
            Length = 718

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 718
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 679 (239.0 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 131/157 (83%), Positives = 145/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   394 NKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 453

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HV SAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   454 DYGFKGAEIAMASYCSELQFLANPVTNHVHSAEQHNQDVNSLGLISSRKTAEAVDILKLM 513

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SST+LVALCQAIDLRHLEEN K TVKNTVS+ A+K L
Sbjct:   514 SSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVL 550

 Score = 95 (33.4 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   374 KSIEREINSVNDNPLIDVSR 393


 >gi|3024361|sp|Q42858|PAL2_IPOBA  PHENYLALANINE AMMONIA-LYASE
            >gi|7437130|pir||T10909 phenylalanine ammonia-lyase (EC 4.3.1.5) -
            sweet potato >gi|1122743|dbj|BAA11459.1| (D78640) Phenylalanine
            Ammonia-Lyase [Ipomoea batatas]
            Length = 708

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            __                       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 708
                       0        150        300       450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 92..136
   BLOCKS               BL00488B: Phenylalanine and histidine am 168..221
   BLOCKS               BL00488C: Phenylalanine and histidine am 272..319
   BLOCKS               BL00488D: Phenylalanine and histidine am 353..406
   BLOCKS               BL00488E: Phenylalanine and histidine am 428..482
   BLOCKS               BL00488F: Phenylalanine and histidine am 486..538
   BLOCKS               BL00488G: Phenylalanine and histidine am 546..598
   BLOCKS               BL00488H: Phenylalanine and histidine am 634..683
   Entrez               active site: BY SIMILARITY.              195
   PFAM                 PAL: Phenylalanine and histidine ammonia 18..698
   PRODOM               PD143658: PAL2_IPOBA                     1..22
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      24..46
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      49..562
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      564..660
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      662..689
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 190..205
__________________


  Plus Strand HSPs:

 Score = 683 (240.4 bits), Expect = 8.6e-74, Sum P(2) = 8.6e-74
 Identities = 132/157 (84%), Positives = 147/157 (93%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN+RLA+ASIGKLIFAQF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   384 NKALHGGNFQGTPIGVSMDNSRLALASIGKLIFAQFSELVNDYYNNGLPSNLTAGRNPSL 443

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK  E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT EAV +LKLM
Sbjct:   444 DYGFKGVEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDVLKLM 503

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  V+NTV++ A++TL
Sbjct:   504 SSTYLVALCQAIDLRHLEENLKNAVRNTVNQVAKRTL 540

 Score = 90 (31.7 bits), Expect = 8.6e-74, Sum P(2) = 8.6e-74
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   364 KMIEREINSVNDNPLIDVSR 383


 >gi|3123241|sp|P35513|PAL2_TOBAC  PHENYLALANINE AMMONIA-LYASE
            >gi|7437118|pir||T01858 phenylalanine ammonia-lyase (EC 4.3.1.5) -
            common tobacco >gi|2564055|dbj|BAA22947.1| (AB008199) phenylalanine
            ammonia-lyase [Nicotiana tabacum] >gi|2570156|dbj|BAA22963.1|
            (D17467) phenylalanine ammonia-lyase [Nicotiana tabacum]
            Length = 712

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 712
                       0        150       300        450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 96..140
   BLOCKS               BL00488B: Phenylalanine and histidine am 172..225
   BLOCKS               BL00488C: Phenylalanine and histidine am 276..323
   BLOCKS               BL00488D: Phenylalanine and histidine am 357..410
   BLOCKS               BL00488E: Phenylalanine and histidine am 432..486
   BLOCKS               BL00488F: Phenylalanine and histidine am 490..542
   BLOCKS               BL00488G: Phenylalanine and histidine am 550..602
   BLOCKS               BL00488H: Phenylalanine and histidine am 638..687
   Entrez               active site: BY SIMILARITY.              199
   PFAM                 PAL: Phenylalanine and histidine ammonia 19..702
   PRODOM               PD043217: PAL2(1) PAL3(1)                1..23
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      25..48
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      50..566
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      568..664
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      667..693
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 194..209
__________________


  Plus Strand HSPs:

 Score = 682 (240.1 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
 Identities = 133/157 (84%), Positives = 146/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDNARLA+ASIGKL+F QF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   388 NKALHGGNFQGTPIGVSMDNARLALASIGKLMFGQFSELVNDYYNNGLPSNLTAGRNPSL 447

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK SE+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSL LISA KT EAV ILKLM
Sbjct:   448 DYGFKGSEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLDLISARKTAEAVDILKLM 507

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN +  VKNTVS+ A++TL
Sbjct:   508 SSTYLVALCQAIDLRHLEENLRNAVKNTVSQVAKRTL 544

 Score = 90 (31.7 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   368 KMIEREINSVNDNPLIDVSR 387


 >gi|6598547|gb|AAD18156.2|  (AC006260) phenylalanine ammonia lyase (PAL1)
            [Arabidopsis thaliana]
            Length = 725

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
                        __________________________________________________
Database sequence:     |          |         |         |          |        | 725
                       0        150       300       450        600

  Plus Strand HSPs:

 Score = 677 (238.3 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
 Identities = 129/159 (81%), Positives = 147/159 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNL+A RNPSL
Sbjct:   401 NKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSL 460

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   461 DYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLM 520

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             S+T+LVA+CQA+DLRHLEEN + TVKNTVS+ A+K L T
Sbjct:   521 STTFLVAICQAVDLRHLEENLRQTVKNTVSQVAKKVLTT 559

 Score = 95 (33.4 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   381 KSIEREINSVNDNPLIDVSR 400


 >gi|7798554|dbj|BAA95629.1|  (AB042520) phenylalanine ammonia lyase
            [Catharanthus roseus]
            Length = 716

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 716
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 681 (239.7 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
 Identities = 133/157 (84%), Positives = 145/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDNARLA+ASIGKL+FAQ +ELVND YNNGLPSNLS GRNPSL
Sbjct:   392 NKALHGGNFQGTPIGVSMDNARLAIASIGKLMFAQISELVNDFYNNGLPSNLSGGRNPSL 451

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
              YGFK +E+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   452 VYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLM 511

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A++TL
Sbjct:   512 SSTYLVALCQAIDLRHLEENLKNAVKNTVSQVAKRTL 548

 Score = 90 (31.7 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   372 KMIEREINSVNDNPLIDVSR 391


 >gi|1172001|sp|P45730|PALY_POPTR  PHENYLALANINE AMMONIA-LYASE
            >gi|541843|pir||JQ2265 phenylalanine ammonia-lyase (EC 4.3.1.5) -
            western balsam poplar x cottonwood >gi|169454|gb|AAA33805.1|
            (L11747) phenylalanine ammonia lyase [Populus x generosa]
            Length = 715

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 715
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 99..143
   BLOCKS               BL00488B: Phenylalanine and histidine am 175..228
   BLOCKS               BL00488C: Phenylalanine and histidine am 279..326
   BLOCKS               BL00488D: Phenylalanine and histidine am 360..413
   BLOCKS               BL00488E: Phenylalanine and histidine am 435..489
   BLOCKS               BL00488F: Phenylalanine and histidine am 493..545
   BLOCKS               BL00488G: Phenylalanine and histidine am 553..605
   BLOCKS               BL00488H: Phenylalanine and histidine am 641..690
   Entrez               active site: BY SIMILARITY.              202
   PFAM                 PAL: Phenylalanine and histidine ammonia 23..705
   PRODOM               PD043218: O24266(1) PALY(1)              1..27
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      29..52
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      54..569
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      571..667
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      669..696
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 197..212
__________________


  Plus Strand HSPs:

 Score = 676 (238.0 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
 Identities = 129/159 (81%), Positives = 146/159 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+A RNPSL
Sbjct:   391 NKAIHGGNFQGTPIGVSMDNVRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTASRNPSL 450

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   451 DYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 510

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             S+T+LVALCQAIDLRHLEEN K  VKNTVS+ +++ L T
Sbjct:   511 STTFLVALCQAIDLRHLEENLKSAVKNTVSQVSKRVLTT 549

 Score = 95 (33.4 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   371 KSIEREINSVNDNPLIDVSR 390


 >gi|129587|sp|P26600|PAL5_LYCES  PHENYLALANINE AMMONIA-LYASE (PAL)
            >gi|170469|gb|AAA34176.1| (M90692) phenylalanine ammonia-lyase
            [Lycopersicon esculentum]
            Length = 721

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 721
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 105..149
   BLOCKS               BL00488B: Phenylalanine and histidine am 181..234
   BLOCKS               BL00488C: Phenylalanine and histidine am 285..332
   BLOCKS               BL00488D: Phenylalanine and histidine am 366..419
   BLOCKS               BL00488E: Phenylalanine and histidine am 441..495
   BLOCKS               BL00488F: Phenylalanine and histidine am 499..551
   BLOCKS               BL00488G: Phenylalanine and histidine am 559..611
   BLOCKS               BL00488H: Phenylalanine and histidine am 647..696
   Entrez               active site: BY SIMILARITY.              208
   PFAM                 PAL: Phenylalanine and histidine ammonia 27..711
   PRODOM               PD143672: PAL5_LYCES                     1..31
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      33..56
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      58..575
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      577..673
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      675..702
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 203..218
__________________


  Plus Strand HSPs:

 Score = 680 (239.4 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
 Identities = 133/157 (84%), Positives = 145/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLP NL+AGRNPSL
Sbjct:   397 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPLNLTAGRNPSL 456

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYG K +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT EAV ILKLM
Sbjct:   457 DYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLM 516

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A+KTL
Sbjct:   517 SSTYLVALCQAIDLRHLEENLKNAVKNTVSQVAKKTL 553

 Score = 90 (31.7 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   377 KMIEREINSVNDNPLIDVSR 396


 >gi|322743|pir||A44133  phenylalanine ammonia-lyase (EC 4.3.1.5) - tomato
            Length = 721

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
Annotated Domains:                    __                                  
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 721
                       0        150       300        450       600
__________________

Annotated Domains:
   Entrez               modified site: serine derivative (Ser)   208
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 203..218
__________________


  Plus Strand HSPs:

 Score = 680 (239.4 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
 Identities = 133/157 (84%), Positives = 145/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLP NL+AGRNPSL
Sbjct:   397 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPLNLTAGRNPSL 456

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYG K +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT EAV ILKLM
Sbjct:   457 DYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLM 516

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQAIDLRHLEEN K  VKNTVS+ A+KTL
Sbjct:   517 SSTYLVALCQAIDLRHLEENLKNAVKNTVSQVAKKTL 553

 Score = 90 (31.7 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   377 KMIEREINSVNDNPLIDVSR 396


 >gi|1172004|sp|P45735|PALY_VITVI  PHENYLALANINE AMMONIA-LYASE
            >gi|1345583|emb|CAA53581.1| (X75967) phenylalanine ammonium lyase
            [Vitis vinifera]
            Length = 416

Frame  2 hits (HSPs):             ____________________                    
Frame  1 hits (HSPs):           ___                                       
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                 |                 |              | 416
                       0               150               300
__________________

Annotated Domains:
   PFAM                 PAL: Phenylalanine and histidine ammonia 1..406
__________________


  Plus Strand HSPs:

 Score = 675 (237.6 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
 Identities = 130/157 (82%), Positives = 144/157 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS  RNPSL
Sbjct:    92 NKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSL 151

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HV+SAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   152 DYGFKGAEIAMASYCSELQFLANPVTNHVESAEQHNQDVNSLGLISSRKTAEAVDILKLM 211

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             S+TYLVALCQAIDLRHLEEN K TVK TVS  A+KTL
Sbjct:   212 STTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTL 248

 Score = 95 (33.4 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:    72 KSIEREINSVNDNPLIDVSR 91


 >gi|129585|sp|P19142|PAL2_PHAVU  PHENYLALANINE AMMONIA-LYASE CLASS II
            >gi|81877|pir||S04127 phenylalanine ammonia-lyase (EC 4.3.1.5)
            class II - kidney bean >gi|228614|prf||1807329A Phe ammonia lyase
            [Phaseolus vulgaris]
            Length = 712

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 712
                       0        150       300        450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 96..140
   BLOCKS               BL00488B: Phenylalanine and histidine am 172..225
   BLOCKS               BL00488C: Phenylalanine and histidine am 276..323
   BLOCKS               BL00488D: Phenylalanine and histidine am 357..410
   BLOCKS               BL00488E: Phenylalanine and histidine am 432..486
   BLOCKS               BL00488F: Phenylalanine and histidine am 490..542
   BLOCKS               BL00488G: Phenylalanine and histidine am 550..602
   BLOCKS               BL00488H: Phenylalanine and histidine am 638..687
   Entrez               active site: BY SIMILARITY.              199
   PFAM                 PAL: Phenylalanine and histidine ammonia 21..702
   PRODOM               PD143664: PAL2_PHAVU                     1..26
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      28..49
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      52..566
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      568..664
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      666..693
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 194..209
__________________


  Plus Strand HSPs:

 Score = 680 (239.4 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
 Identities = 132/159 (83%), Positives = 147/159 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF++LVND YNNGLPSNL+A RNPSL
Sbjct:   388 NKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSDLVNDYYNNGLPSNLTASRNPSL 447

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSLGLIS+ KT EA+ ILKLM
Sbjct:   448 DYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEALEILKLM 507

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+LVALCQAIDLRHLEEN K TVKN VS+ A++TL T
Sbjct:   508 SSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTT 546

 Score = 89 (31.3 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLI V+R
Sbjct:   368 KSIEREINSVNDNPLISVSR 387


 >gi|1171998|sp|P45726|PALY_CAMSI  PHENYLALANINE AMMONIA-LYASE
            >gi|662271|dbj|BAA05643.1| (D26596) phenylalanine ammonia-lyase
            [Camellia sinensis]
            Length = 714

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 714
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 98..142
   BLOCKS               BL00488B: Phenylalanine and histidine am 174..227
   BLOCKS               BL00488C: Phenylalanine and histidine am 278..325
   BLOCKS               BL00488D: Phenylalanine and histidine am 359..412
   BLOCKS               BL00488E: Phenylalanine and histidine am 434..488
   BLOCKS               BL00488F: Phenylalanine and histidine am 492..544
   BLOCKS               BL00488G: Phenylalanine and histidine am 552..604
   BLOCKS               BL00488H: Phenylalanine and histidine am 640..689
   Entrez               active site: BY SIMILARITY.              201
   PFAM                 PAL: Phenylalanine and histidine ammonia 23..704
   PRODOM               PD143667: PALY_CAMSI                     1..27
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      29..52
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      54..568
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      570..666
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      668..695
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 196..211
__________________


  Plus Strand HSPs:

 Score = 679 (239.0 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
 Identities = 131/157 (83%), Positives = 145/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLAVASIGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   390 NKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 449

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMAAYCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   450 DYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 509

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SSTYLVALCQA+DLRH EEN + TVK+TVS+ A++ L
Sbjct:   510 SSTYLVALCQAVDLRHFEENLRNTVKSTVSQVAKRVL 546

 Score = 90 (31.7 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
 Identities = 18/20 (90%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLI+V+R
Sbjct:   370 KSIEREINSVNDNPLINVSR 389


 >gi|1076275|pir||S52632  phenylalanine ammonia-lyase (EC 4.3.1.5) - muskmelon
            >gi|735957|emb|CAA53733.1| (X76130) phenylanaline ammonia-lyase
            [Cucumis melo]
            Length = 619

Frame  2 hits (HSPs):                          ______________             
Frame  1 hits (HSPs):                         __                          
                        __________________________________________________
Database sequence:     |            |           |           |           | | 619
                       0          150         300         450         600

  Plus Strand HSPs:

 Score = 674 (237.3 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
 Identities = 129/157 (82%), Positives = 144/157 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLS G NPSL
Sbjct:   297 NKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSL 356

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+ ILKLM
Sbjct:   357 DYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLM 416

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             S+T+L ALCQAIDLRH+EEN K TVKNTVS+ A+K L
Sbjct:   417 STTFLAALCQAIDLRHIEENLKSTVKNTVSQVAKKIL 453

 Score = 95 (33.4 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   277 KSIEREINSVNDNPLIDVSR 296


 >gi|129584|sp|P27991|PAL1_SOYBN  PHENYLALANINE AMMONIA-LYASE 1
            >gi|99944|pir||S22991 phenylalanine ammonia-lyase (EC 4.3.1.5) 1 -
            soybean >gi|18377|emb|CAA37129.1| (X52953) phenylalanine
            ammonia-lyase [Glycine max]
            Length = 713

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 713
                       0        150       300        450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 97..141
   BLOCKS               BL00488B: Phenylalanine and histidine am 173..226
   BLOCKS               BL00488C: Phenylalanine and histidine am 277..324
   BLOCKS               BL00488D: Phenylalanine and histidine am 358..411
   BLOCKS               BL00488E: Phenylalanine and histidine am 433..487
   BLOCKS               BL00488F: Phenylalanine and histidine am 491..543
   BLOCKS               BL00488G: Phenylalanine and histidine am 551..603
   BLOCKS               BL00488H: Phenylalanine and histidine am 639..688
   Entrez               active site: BY SIMILARITY.              200
   PFAM                 PAL: Phenylalanine and histidine ammonia 22..703
   PRODOM               PD143666: PAL1_SOYBN                     1..27
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      29..51
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      53..567
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      569..665
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      667..694
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 195..210
__________________


  Plus Strand HSPs:

 Score = 672 (236.6 bits), Expect = 3.7e-73, Sum P(2) = 3.7e-73
 Identities = 129/159 (81%), Positives = 147/159 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+A RNPSL
Sbjct:   389 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSL 448

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+ ILKLM
Sbjct:   449 DYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLM 508

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+L+ALCQAIDLRHLEEN K +VKNTVS+ +++ L T
Sbjct:   509 SSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRILTT 547

 Score = 95 (33.4 bits), Expect = 3.7e-73, Sum P(2) = 3.7e-73
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   369 KSIEREINSVNDNPLIDVSR 388


 >gi|1171991|sp|P35510|PAL1_ARATH  PHENYLALANINE AMMONIA-LYASE 1
            >gi|1076369|pir||S52990 phenylalanine ammonia-lyase (EC 4.3.1.5) 1
            - Arabidopsis thaliana >gi|497419|gb|AAC18870.1| (L33677)
            phenylalanine ammonia lyase [Arabidopsis thaliana]
            Length = 725

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                             __                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |         |          |        | 725
                       0        150       300       450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 109..153
   BLOCKS               BL00488B: Phenylalanine and histidine am 185..238
   BLOCKS               BL00488C: Phenylalanine and histidine am 289..336
   BLOCKS               BL00488D: Phenylalanine and histidine am 370..423
   BLOCKS               BL00488E: Phenylalanine and histidine am 445..499
   BLOCKS               BL00488F: Phenylalanine and histidine am 503..555
   BLOCKS               BL00488G: Phenylalanine and histidine am 563..615
   BLOCKS               BL00488H: Phenylalanine and histidine am 651..700
   DOMO                 DM01898: PHENYLALANINEANDHISTIDINEAMMONI 1..60
   DOMO                 DM00721: PHENYLALANINEANDHISTIDINEAMMONI 62..575
   DOMO                 DM03479: HISTIDINEAMMONIA-LYASE          577..724
   Entrez               active site: BY SIMILARITY.              212
   PFAM                 PAL: Phenylalanine and histidine ammonia 34..715
   PRODOM               PD143674: PAL1_ARATH                     1..39
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      41..63
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      65..582
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      584..677
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      679..706
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 207..222
__________________


  Plus Strand HSPs:

 Score = 672 (236.6 bits), Expect = 3.7e-73, Sum P(2) = 3.7e-73
 Identities = 128/159 (80%), Positives = 146/159 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+ +IGKL+FAQF+ELVND YNNGLPSNL+A RNPSL
Sbjct:   401 NKAIHGGNFQGTPIGVSMDNTRLAIRAIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSL 460

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   461 DYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLM 520

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             S+T+LVA+CQA+DLRHLEEN + TVKNTVS+ A+K L T
Sbjct:   521 STTFLVAICQAVDLRHLEENLRQTVKNTVSQVAKKVLTT 559

 Score = 95 (33.4 bits), Expect = 3.7e-73, Sum P(2) = 3.7e-73
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   381 KSIEREINSVNDNPLIDVSR 400


 >gi|5566388|gb|AAD45384.1|  (AF165998) phenylalanine ammonia-lyase [Vigna
            unguiculata]
            Length = 655

Frame  2 hits (HSPs):                            _____________            
Frame  1 hits (HSPs):                          ___                        
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 655
                       0         150        300         450        600

  Plus Strand HSPs:

 Score = 676 (238.0 bits), Expect = 4.7e-73, Sum P(2) = 4.7e-73
 Identities = 130/159 (81%), Positives = 145/159 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+AGRNPSL
Sbjct:   331 NKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTAGRNPSL 390

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGL+S+ KT EA  ILKLM
Sbjct:   391 DYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAEEILKLM 450

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+LVALCQAIDLRHLEEN K  VKN VS+ A++ L T
Sbjct:   451 SSTFLVALCQAIDLRHLEENMKNAVKNAVSQVAKRVLTT 489

 Score = 90 (31.7 bits), Expect = 4.7e-73, Sum P(2) = 4.7e-73
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   311 KMIEREINSVNDNPLIDVSR 330


 >gi|3024360|sp|Q42667|PALY_CITLI  PHENYLALANINE AMMONIA-LYASE
            >gi|1276903|gb|AAB67733.1| (U43338) phenylalanine ammonia-lyase
            [Citrus limon]
            Length = 722

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 722
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 104..148
   BLOCKS               BL00488B: Phenylalanine and histidine am 180..233
   BLOCKS               BL00488C: Phenylalanine and histidine am 284..331
   BLOCKS               BL00488D: Phenylalanine and histidine am 365..418
   BLOCKS               BL00488E: Phenylalanine and histidine am 440..494
   BLOCKS               BL00488F: Phenylalanine and histidine am 498..550
   BLOCKS               BL00488G: Phenylalanine and histidine am 558..610
   BLOCKS               BL00488H: Phenylalanine and histidine am 646..695
   Entrez               active site: BY SIMILARITY.              207
   PFAM                 PAL: Phenylalanine and histidine ammonia 29..710
   PRODOM               PD143673: PALY_CITLI                     1..33
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      35..58
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      60..574
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      576..672
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      674..701
   PRODOM               PD143683: PALY_CITLI                     703..721
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 202..217
__________________


  Plus Strand HSPs:

 Score = 674 (237.3 bits), Expect = 7.7e-73, Sum P(2) = 7.7e-73
 Identities = 130/157 (82%), Positives = 145/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+ GRNPSL
Sbjct:   396 NKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTGGRNPSL 455

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGL S+ KT EAV ILKLM
Sbjct:   456 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLNSSRKTAEAVDILKLM 515

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SST+LVALCQAIDLRHLEEN K TVKNTVS+ A++ L
Sbjct:   516 SSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVL 552

 Score = 90 (31.7 bits), Expect = 7.7e-73, Sum P(2) = 7.7e-73
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   376 KMIEREINSVNDNPLIDVSR 395


 >gi|81875|pir||A24727  phenylalanine ammonia-lyase (EC 4.3.1.5) - kidney bean
            (fragment) >gi|169357|gb|AAA33770.1| (M11939) phenylalanine
            ammonia-lyase (EC 4.3.1.5) [Phaseolus vulgaris]
            >gi|224727|prf||1111326A ammonia lyase,Phe [Phaseolus vulgaris]
            Length = 505

Frame  2 hits (HSPs):                    _________________                
Frame  1 hits (HSPs):                  ___                                
                        __________________________________________________
Database sequence:     |              |              |              |     | 505
                       0            150            300            450

  Plus Strand HSPs:

 Score = 669 (235.5 bits), Expect = 7.7e-73, Sum P(2) = 7.7e-73
 Identities = 129/159 (81%), Positives = 146/159 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+A RNPSL
Sbjct:   181 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSL 240

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSL LISA KT E++ ILKLM
Sbjct:   241 DYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLDLISARKTNESIEILKLM 300

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+L+ LCQAIDLRHLEEN K +VKNTVS+ +++TL T
Sbjct:   301 SSTFLMGLCQAIDLRHLEENLKSSVKNTVSQVSKRTLTT 339

 Score = 95 (33.4 bits), Expect = 7.7e-73, Sum P(2) = 7.7e-73
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   161 KSIEREINSVNDNPLIDVSR 180


 >gi|129583|sp|P07218|PAL1_PHAVU  PHENYLALANINE AMMONIA-LYASE CLASS I
            >gi|81876|pir||S04129 phenylalanine ammonia-lyase (EC 4.3.1.5)
            class I - kidney bean (fragment)
            Length = 506

Frame  2 hits (HSPs):                    _________________                
Frame  1 hits (HSPs):                  ___                                
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |              |              |              |     | 506
                       0            150            300            450
__________________

Annotated Domains:
   PFAM                 PAL: Phenylalanine and histidine ammonia 1..496
__________________


  Plus Strand HSPs:

 Score = 669 (235.5 bits), Expect = 7.7e-73, Sum P(2) = 7.7e-73
 Identities = 129/159 (81%), Positives = 146/159 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+A RNPSL
Sbjct:   182 NKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSL 241

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSL LISA KT E++ ILKLM
Sbjct:   242 DYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLDLISARKTNESIEILKLM 301

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             SST+L+ LCQAIDLRHLEEN K +VKNTVS+ +++TL T
Sbjct:   302 SSTFLMGLCQAIDLRHLEENLKSSVKNTVSQVSKRTLTT 340

 Score = 95 (33.4 bits), Expect = 7.7e-73, Sum P(2) = 7.7e-73
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   162 KSIEREINSVNDNPLIDVSR 181


 >gi|1171999|sp|P45727|PALY_PERAE  PHENYLALANINE AMMONIA-LYASE
            >gi|563243|gb|AAA51873.1| (U16130) phenylalanine ammonia lyase
            [Persea americana]
            Length = 620

Frame  2 hits (HSPs):                          ______________             
Frame  1 hits (HSPs):                         __                          
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |           |           |           | | 620
                       0          150         300         450         600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 3..47
   BLOCKS               BL00488B: Phenylalanine and histidine am 79..132
   BLOCKS               BL00488C: Phenylalanine and histidine am 183..230
   BLOCKS               BL00488D: Phenylalanine and histidine am 265..318
   BLOCKS               BL00488E: Phenylalanine and histidine am 340..394
   BLOCKS               BL00488F: Phenylalanine and histidine am 398..450
   BLOCKS               BL00488G: Phenylalanine and histidine am 458..510
   BLOCKS               BL00488H: Phenylalanine and histidine am 546..595
   Entrez               active site: BY SIMILARITY.              106
   PFAM                 PAL: Phenylalanine and histidine ammonia 1..610
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      1..474
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      477..571
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      573..601
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 101..116
__________________


  Plus Strand HSPs:

 Score = 673 (236.9 bits), Expect = 9.8e-73, Sum P(2) = 9.8e-73
 Identities = 130/157 (82%), Positives = 144/157 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+G NFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   296 NKALHGRNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 355

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMAAYCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   356 DYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLM 415

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SST+LV LCQAIDLRHLEEN K TVKNTVS+ A++ L
Sbjct:   416 SSTFLVGLCQAIDLRHLEENLKSTVKNTVSQVAKRVL 452

 Score = 90 (31.7 bits), Expect = 9.8e-73, Sum P(2) = 9.8e-73
 Identities = 18/19 (94%), Positives = 19/19 (100%), Frame = +1

Query:     4 SIEREINSVNDNPLIDVTR 60
             SIEREINSVNDNPLIDV+R
Sbjct:   277 SIEREINSVNDNPLIDVSR 295


 >gi|9910836|sp|Q9SMK9|PAL2_CICAR  PHENYLALANINE AMMONIA-LYASE 2
            >gi|6433808|emb|CAB60719.1| (AJ250836) phenylalanine ammonia-lyase
            [Cicer arietinum]
            Length = 718

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 718
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 673 (236.9 bits), Expect = 9.8e-73, Sum P(2) = 9.8e-73
 Identities = 129/157 (82%), Positives = 144/157 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+  RNPSL
Sbjct:   394 NKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTGSRNPSL 453

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   454 DYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLM 513

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             SST+LVALCQAIDLRH+EEN K  VKNTVS+ A++ L
Sbjct:   514 SSTFLVALCQAIDLRHIEENLKSVVKNTVSQVAKRVL 550

 Score = 90 (31.7 bits), Expect = 9.8e-73, Sum P(2) = 9.8e-73
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   374 KMIEREINSVNDNPLIDVSR 393


 >gi|1171993|sp|P45724|PAL2_ARATH  PHENYLALANINE AMMONIA-LYASE 2
            >gi|1076370|pir||S52991 phenylalanine ammonia-lyase (EC 4.3.1.5) 2
            - Arabidopsis thaliana >gi|497421|gb|AAC18871.1| (L33678)
            phenylalanine ammonia lyase [Arabidopsis thaliana]
            Length = 717

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 717
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 101..145
   BLOCKS               BL00488B: Phenylalanine and histidine am 177..230
   BLOCKS               BL00488C: Phenylalanine and histidine am 281..328
   BLOCKS               BL00488D: Phenylalanine and histidine am 362..415
   BLOCKS               BL00488E: Phenylalanine and histidine am 437..491
   BLOCKS               BL00488F: Phenylalanine and histidine am 495..547
   BLOCKS               BL00488G: Phenylalanine and histidine am 555..607
   BLOCKS               BL00488H: Phenylalanine and histidine am 643..692
   Entrez               active site: BY SIMILARITY.              204
   PFAM                 PAL: Phenylalanine and histidine ammonia 26..707
   PRODOM               PD143670: PAL2_ARATH                     1..30
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      32..55
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      57..574
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      576..669
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      671..698
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 199..214
__________________


  Plus Strand HSPs:

 Score = 667 (234.8 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
 Identities = 127/159 (79%), Positives = 145/159 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNL+A  NPSL
Sbjct:   393 NKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLTASSNPSL 452

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   453 DYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLM 512

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             S+T+LV +CQA+DLRHLEEN + TVKNTVS+ A+K L T
Sbjct:   513 STTFLVGICQAVDLRHLEENLRQTVKNTVSQVAKKVLTT 551

 Score = 95 (33.4 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   373 KSIEREINSVNDNPLIDVSR 392


 >gi|11269670|pir||T46172  phenylalanine ammonia-lyase (EC 4.3.1.5) 2
            [similarity] - Arabidopsis thaliana >gi|6630746|emb|CAB64229.1|
            (AL132958) phenylalanine ammonia-lyase [Arabidopsis thaliana]
            Length = 717

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 717
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 667 (234.8 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
 Identities = 127/159 (79%), Positives = 145/159 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNL+A  NPSL
Sbjct:   393 NKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLTASSNPSL 452

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   453 DYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLM 512

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             S+T+LV +CQA+DLRHLEEN + TVKNTVS+ A+K L T
Sbjct:   513 STTFLVGICQAVDLRHLEENLRQTVKNTVSQVAKKVLTT 551

 Score = 95 (33.4 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   373 KSIEREINSVNDNPLIDVSR 392


 >gi|5690433|gb|AAD47085.1|AF167487_1  (AF167487) phenylalanine ammonia lyase
            [Eucalyptus globulus]
            Length = 398

Frame  2 hits (HSPs):            _____________________                    
Frame  1 hits (HSPs):         ____                                        
                        __________________________________________________
Database sequence:     |                  |                  |            | 398
                       0                150                300

  Plus Strand HSPs:

 Score = 672 (236.6 bits), Expect = 1.6e-72, Sum P(2) = 1.6e-72
 Identities = 129/158 (81%), Positives = 144/158 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:    76 NKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 135

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+ ILKL+
Sbjct:   136 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLV 195

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLI 535
             SST+LV LCQA DLRHLEEN K TVKNTV R A+K L+
Sbjct:   196 SSTFLVGLCQAGDLRHLEENLKSTVKNTVGRVARKVLM 233

 Score = 89 (31.3 bits), Expect = 1.6e-72, Sum P(2) = 1.6e-72
 Identities = 18/20 (90%), Positives = 18/20 (90%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV R
Sbjct:    56 KMIEREINSVNDNPLIDVAR 75


 >gi|3334285|sp|O23865|PAL1_DAUCA  PHENYLALANINE AMMONIA-LYASE 1
            >gi|7437127|pir||T14295 phenylalanine ammonia-lyase (EC 4.3.1.5) -
            carrot >gi|2618590|dbj|BAA23367.1| (D85850) phenylalanine
            ammonia-lyase [Daucus carota]
            Length = 708

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            __                       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 708
                       0        150        300       450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 92..136
   BLOCKS               BL00488B: Phenylalanine and histidine am 168..221
   BLOCKS               BL00488C: Phenylalanine and histidine am 272..319
   BLOCKS               BL00488D: Phenylalanine and histidine am 353..406
   BLOCKS               BL00488E: Phenylalanine and histidine am 428..482
   BLOCKS               BL00488F: Phenylalanine and histidine am 486..538
   BLOCKS               BL00488G: Phenylalanine and histidine am 546..598
   BLOCKS               BL00488H: Phenylalanine and histidine am 634..683
   Entrez               active site: BY SIMILARITY.              195
   PFAM                 PAL: Phenylalanine and histidine ammonia 19..698
   PRODOM               PD143659: PAL1_DAUCA                     1..23
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      25..47
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      50..562
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      564..660
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      662..689
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 190..205
__________________


  Plus Strand HSPs:

 Score = 671 (236.2 bits), Expect = 1.6e-72, Sum P(2) = 1.6e-72
 Identities = 127/157 (80%), Positives = 144/157 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   384 NKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 443

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+L NPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   444 DYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLM 503

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             S+T+LV LCQA+DLRHLEEN K TVKNTVS+ A+K L
Sbjct:   504 STTFLVGLCQAVDLRHLEENLKSTVKNTVSQVAKKVL 540

 Score = 90 (31.7 bits), Expect = 1.6e-72, Sum P(2) = 1.6e-72
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   364 KMIEREINSVNDNPLIDVSR 383


 >gi|2285893|dbj|BAA21643.1|  (D30656) phenylalanine ammonia-lyase [Populus
            kitakamiensis]
            Length = 715

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 715
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 665 (234.1 bits), Expect = 2.0e-72, Sum P(2) = 2.0e-72
 Identities = 129/160 (80%), Positives = 145/160 (90%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+A RNPSL
Sbjct:   390 NKALHGGNFQGTPIGVSMDNVRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTASRNPSL 449

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKT-VEAVXILKL 418
             DYGFK +E+AMA+YCSELQYLANPVTSHVQSAEQHNQDVNSLGLIS+ KT  EAV ILKL
Sbjct:   450 DYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTGSEAVDILKL 509

Query:   419 MSSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTLIT 538
             MS+T+LVALCQA+DLRHLEEN +  VKNTVS  +++ L T
Sbjct:   510 MSTTFLVALCQAVDLRHLEENLRSAVKNTVSHVSKRVLTT 549

 Score = 95 (33.4 bits), Expect = 2.0e-72, Sum P(2) = 2.0e-72
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   370 KSIEREINSVNDNPLIDVSR 389


 >gi|129582|sp|P24481|PAL1_PETCR  PHENYLALANINE AMMONIA-LYASE 1
            >gi|82063|pir||S04463 phenylalanine ammonia-lyase (EC 4.3.1.5) -
            parsley >gi|1524313|emb|CAA68938.1| (Y07654) PAL1 protein
            [Petroselinum crispum]
            Length = 716

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 716
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 102..146
   BLOCKS               BL00488B: Phenylalanine and histidine am 176..229
   BLOCKS               BL00488C: Phenylalanine and histidine am 280..327
   BLOCKS               BL00488D: Phenylalanine and histidine am 361..414
   BLOCKS               BL00488E: Phenylalanine and histidine am 436..490
   BLOCKS               BL00488F: Phenylalanine and histidine am 494..546
   BLOCKS               BL00488G: Phenylalanine and histidine am 554..606
   BLOCKS               BL00488H: Phenylalanine and histidine am 642..691
   Entrez               active site                              203
   Entrez               mutagenized site: S->A: COMPLETE LOSS OF 203
   Entrez               mutagenized site: S->A: NO LOSS OF ACTIV 210
   PFAM                 PAL: Phenylalanine and histidine ammonia 26..706
   PRODOM               PD025351: PAL1(1) PAL2(1) PAL3(1)        5..30
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      32..55
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      57..570
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      572..668
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      670..697
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 198..213
__________________


  Plus Strand HSPs:

 Score = 669 (235.5 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
 Identities = 128/157 (81%), Positives = 144/157 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   392 NKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 451

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   452 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLM 511

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             S+T+LV LCQAIDLRHLEEN K TVKNTVS  A++ L
Sbjct:   512 STTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVL 548

 Score = 90 (31.7 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   372 KMIEREINSVNDNPLIDVSR 391


 >gi|1220270|emb|CAA34715.1|  (X16772) phenylalanine ammonia-lyase (AA 137 - 716)
            (1 is 3rd base in codon) [Petroselinum crispum]
            Length = 580

Frame  2 hits (HSPs):                        _______________              
Frame  1 hits (HSPs):                       __                            
                        __________________________________________________
Database sequence:     |            |            |            |           | 580
                       0          150          300          450

  Plus Strand HSPs:

 Score = 669 (235.5 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
 Identities = 128/157 (81%), Positives = 144/157 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   256 NKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 315

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   316 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLM 375

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             S+T+LV LCQAIDLRHLEEN K TVKNTVS  A++ L
Sbjct:   376 STTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVL 412

 Score = 90 (31.7 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   236 KMIEREINSVNDNPLIDVSR 255


 >gi|2118318|pir||S60043  phenylalanine ammonia-lyase (EC 4.3.1.5) 4 - Japanese
            aspen x large-toothed aspen (fragment)
            Length = 582

Frame  2 hits (HSPs):                         ______________              
Frame  1 hits (HSPs):                       __                            
Annotated Domains:           __                                           
                        __________________________________________________
Database sequence:     |            |            |            |           | 582
                       0          150          300          450
__________________

Annotated Domains:
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 64..79
__________________


  Plus Strand HSPs:

 Score = 669 (235.5 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
 Identities = 128/157 (81%), Positives = 145/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+ASIGKL+FAQF+ELVND YNNGLPSNL+ GRNPSL
Sbjct:   258 NKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTGGRNPSL 317

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISA KT EAV IL +M
Sbjct:   318 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVEILNVM 377

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             S+T+LVALCQAIDLRH+EEN K TVKNTVS+ A++ L
Sbjct:   378 STTWLVALCQAIDLRHIEENLKNTVKNTVSQVAKRVL 414

 Score = 90 (31.7 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   238 KMIEREINSVNDNPLIDVSR 257


 >gi|3024359|sp|Q42609|PALY_BROFI  PHENYLALANINE AMMONIA-LYASE
            >gi|1491619|emb|CAA68256.1| (X99997) phenylalanine ammonia-lyase
            [Bromheadia finlaysoniana]
            Length = 703

Frame  2 hits (HSPs):                             _____________           
Frame  1 hits (HSPs):                            __                       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 703
                       0        150        300       450        600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 90..134
   BLOCKS               BL00488B: Phenylalanine and histidine am 164..217
   BLOCKS               BL00488C: Phenylalanine and histidine am 268..315
   BLOCKS               BL00488D: Phenylalanine and histidine am 349..402
   BLOCKS               BL00488E: Phenylalanine and histidine am 424..478
   BLOCKS               BL00488F: Phenylalanine and histidine am 482..534
   BLOCKS               BL00488G: Phenylalanine and histidine am 542..594
   BLOCKS               BL00488H: Phenylalanine and histidine am 630..679
   Entrez               active site: BY SIMILARITY.              191
   PFAM                 PAL: Phenylalanine and histidine ammonia 15..693
   PRODOM               PD143656: PALY_BROFI                     1..20
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      22..44
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      46..558
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      560..653
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      658..684
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 186..201
__________________


  Plus Strand HSPs:

 Score = 664 (233.7 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
 Identities = 127/157 (80%), Positives = 144/157 (91%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKAL+GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS+GRNPSL
Sbjct:   380 NKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSSGRNPSL 439

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   440 DYGFKGAEIAMASYCSELQALANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 499

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             S+T+LV LCQA+DLRHLEEN K  VKNTVS+ A++ L
Sbjct:   500 STTFLVGLCQAVDLRHLEENLKNAVKNTVSQVAKRVL 536

 Score = 95 (33.4 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
 Identities = 19/20 (95%), Positives = 20/20 (100%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             KSIEREINSVNDNPLIDV+R
Sbjct:   360 KSIEREINSVNDNPLIDVSR 379


 >gi|1171996|sp|P45729|PAL3_PETCR  PHENYLALANINE AMMONIA-LYASE 3
            >gi|535008|emb|CAA57057.1| (X81159) phenylalanine ammonia-lyase 3
            [Petroselinum crispum]
            Length = 718

Frame  2 hits (HSPs):                              ____________           
Frame  1 hits (HSPs):                            ___                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 718
                       0        150       300        450       600
__________________

Annotated Domains:
   BLOCKS               BL00488A: Phenylalanine and histidine am 101..145
   BLOCKS               BL00488B: Phenylalanine and histidine am 178..231
   BLOCKS               BL00488C: Phenylalanine and histidine am 282..329
   BLOCKS               BL00488D: Phenylalanine and histidine am 363..416
   BLOCKS               BL00488E: Phenylalanine and histidine am 438..492
   BLOCKS               BL00488F: Phenylalanine and histidine am 496..548
   BLOCKS               BL00488G: Phenylalanine and histidine am 556..608
   BLOCKS               BL00488H: Phenylalanine and histidine am 644..693
   Entrez               active site: BY SIMILARITY.              205
   PFAM                 PAL: Phenylalanine and histidine ammonia 25..708
   PRODOM               PD025351: PAL1(1) PAL2(1) PAL3(1)        5..29
   PRODOM               PD001870: PAL1(12) PALY(10) PAL2(8)      31..54
   PRODOM               PD001290: PALY(14) PAL1(12) PAL2(9)      56..572
   PRODOM               PD001719: PALY(12) PAL1(12) PAL2(9)      574..670
   PRODOM               PD001814: PAL1(12) PALY(10) PAL2(9)      672..699
   PROSITE              PAL_HISTIDASE: Phenylalanine and histidi 200..215
__________________


  Plus Strand HSPs:

 Score = 667 (234.8 bits), Expect = 4.2e-72, Sum P(2) = 4.2e-72
 Identities = 127/157 (80%), Positives = 145/157 (92%), Frame = +2

Query:    62 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 241
             NKA++GGNFQG+PIGVSMDN RLA+A+IGKL+FAQF+ELVND YNNGLPSNLS GRNPSL
Sbjct:   394 NKAIHGGNFQGSPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSL 453

Query:   242 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVXILKLM 421
             DYGFK +E+AMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+ KT EAV ILKLM
Sbjct:   454 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLM 513

Query:   422 SSTYLVALCQAIDLRHLEENFKXTVKNTVSRXAQKTL 532
             S+T+LV LCQAIDLRHLEEN K TVKNTVS+ A++ L
Sbjct:   514 STTFLVGLCQAIDLRHLEENLKSTVKNTVSQVAKRVL 550

 Score = 90 (31.7 bits), Expect = 4.2e-72, Sum P(2) = 4.2e-72
 Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1

Query:     1 KSIEREINSVNDNPLIDVTR 60
             K IEREINSVNDNPLIDV+R
Sbjct:   374 KMIEREINSVNDNPLIDVSR 393


WARNING:  HSPs involving 72 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.96

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.374   0.165   0.637  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.325   0.136   0.383  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.357   0.158   0.654  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.359   0.158   0.576  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.341   0.145   0.493  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.350   0.154   0.520  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      179       175       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   +2      0      180       177       10.  76 3  12 22  0.11    34
                                                    31  0.11    37
   +1      0      180       176       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   -1      0      180       176       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   -2      0      180       176       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   -3      0      179       175       10.  75 3  12 22  0.11    34
                                                    31  0.11    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  122
  No. of states in DFA:  597 (59 KB)
  Total size of DFA:  208 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.01s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  162.91u 1.23s 164.14t  Elapsed: 00:00:28
  Total cpu time:  162.97u 1.27s 164.24t  Elapsed: 00:00:28
  Start:  Mon Oct  1 19:12:46 2001   End:  Mon Oct  1 19:13:14 2001

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000