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Submitted SNP(ss) Details: ss971455           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000804-520800
RefSNP(rs#)rs160729
Submitted Batch IDOVLP-000804-1
Submitted DateSep 01, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPSep 1 2000 12:00:00:000AM
Resource Links
GenBank AccessionAC025228.2
AC025775.3
Submitted Gene NameN.D
Submitted Gene IDN.D.
Submitted SNP SynonymsN.D
Submitted linkoutN.D
Submission reportview
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
SNP Classsingle base
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC025228 SequenceAccession1:AC025228 SequenceVersion1:2 SequenceContigName1:Contig24 SequenceContigPosition1:2577 SequenceLocalName2:AC025775 SequenceAccession2:AC025775 SequenceVersion2:3 SequenceContigName2:Contig10 SequenceContigPosition2:2079 PolyBayesConfidence:99

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss971455|allelePos=1001|len=2001|taxid=9606|alleles='C/T'|mol=Genomic
 TTCCGGCCTC TGCACCAACA CATTaagagt atgtaagctt tcactcccat ccctacagca
 agaaaatctg aacaaactga aaatcagtga ctttctttag actcatcagt aaagtACATT
 TGTAAAGAGA CCAGGCAACA ATTAACCAGG AAGTCCAGCT GAGATGGGCT TACCTGGAGC
 AGGGGCCCCA GGATCCATCA ACTGTAGAAA CTtgtaaata caaattatgg tgaatttatg
 gaagctgaga gtgagaagct cctggaggac tgcagtcttg aggagacccc acattttaat
 gattttacct ccagcaacct cattaggttc tttattattc catttttgca ctgctataaa
 gaaataccta aaactgggtg atctataaag aaaagaggtt taattggctc acagttctgc
 aagctgtaca gggagcatgg ctgggggtgc ctcaggaaac ttaaaatcat ggtggaagac
 gaaggggaag caggcacatt ttacacggtc aggcaggagg aagagagaga gggggtgaga
 actttgctca ctattgtgag aacagcaaag gggagatatc cacccccatg acccagccac
 ctccccacca ggttcccctc ctccaatact gggaatcaca attccaaatg tgggattttg
 gggtggggac acggacccaa accacattag gttctcacaa gaaaaacatg agaaagattc
 cctcatggtt ctgggttcgt ttttgccttg tgccctgagc tgttgggata tactctgtct
 ccctgcaacc ctgaactgaa ataattgggt aaatcattat cctgttttta ttaatatttc
 tcaaatgtat gtacagctca cgtttatttc aatgcttaat attataagtg ttttggtctt
 tagcagtttg atgatggttt tagtgacagg aaatatgctg taggaactta accctgcttt
 acatcaatta gcctgtggta agattggctt cattaggcat
 Y
 gttttttaaa gttgcatttt ctaagaatct attgatgaca ctaagtgagg acctcctgta
 cctgctggct ttttgtatat cttctttgga gaaatgtcta ttcaggtctg cagtccattt
 tttaaatggg ttcttactta ttttgctatt gagttgcagg ggttcctcat atcttttgac
 tttttttttt ttttttttga gacagattct ccctctgttg cccaggctgg agtgaagagg
 catgatctcg gctcactgca acctctgcct cccaggctca agtgattctc ctgcctcagc
 ctcccaagta gctgggatta cagatgtgca ccactgtgcc tggctaattt ttgtattttt
 agcacagaca gagtttcacc atgttggcca gtctggtctt gaactcctga cctcaagcaa
 tccaccttcc tcagcctacc aaagtgttga gatgggtgta agcccccaca tctggccatt
 atttagaaaa ttattccctt gctcagtgca tggtttgcag atatgttctc ccattgtgta
 ggttgccttt tcactctgct gattgtttcc tttgttgGGA TTGATCCCAT GGATATGACA
 CCAAAAGCAA AGGCAGCAAA AGCAGAATTA GTCTGAGTGA GACTAAATCA AACTACAAAT
 CTCTCAAAAA ATAAAAAATA AAAAGAAGGC ATAGTGGTGT TCCAAAGTAG ACTTACATTA
 GTTAACATGC CCTTGAGAAA AGTCTGGGAC AGCTAGTCAt tttttttttt ttgagacaca
 atttcactct attgcccaag ctggagtaca gtggtgtgat ctcggctcaa tgcaacctca
 cttcccaggt tcaagcagtt cccatgcctc agccgcccga gtagctggga ttacaggtgc
 aggtcaccac acccagctaa tatttattta tttatttgtt tatttatagt gatggggttt
 caccatgttg gccaggctgg tcttgaactc ctgacctcaA

  Submitted Frequency for ss971455 back to top
There is no frequency submission for ss971455.

  dbSNP summary of Genotypes for ss971455 back to top
No sufficient data to compute Hardy-weinberg probability for ss971455.

  Submitted individual genotype for ss971455 back to top
There is no individual genotype data for ss971455.

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Revised: May 25, 2006 1:38 PM .