33 proteins |
K | COG2932 | Predicted transcriptional regulator | Help | |
---|---|---|---|---|---|
1 from | query genome Lactococcus lactis (Lactobacillales | Bacilli) | ||||
L102100_2 |
148 letters (r) 0 0 699 = ||| 1 L102100_2 (148) = -11 -5 134 = ||| 5 SPy1198_2 (124) = -43 -12 97 = || 18 SA1805_2 (86) = -19 -7 96 = ||| 7 SPy1486_2 (117) = -11 -5 95 = ||| 7 SPy0657_2 (130) = -32 -6 82 = ||| 12 SPy2125_2 (103) = -32 -7 82 = ||| 9 SPy0939_2 (104) = 896 123 73 _ 255 all2642 (1164) COG1020 -44 378 69 _ 255 PA1524 (484) COG4630 77 -4 66 = 47 FN1589 (219) = 69 41 64 _ 255 all3853 (258) COG1191 15 -57 63 6 ML0406 (106) 79 169 63 _ 255 TVN0993 (396) COG0644 106 0 62 255 VC1044 (253) 79 169 62 _ 255 Ta0516m (396) COG0644 -31 193 62 _ 255 AF2420_1 (310) COG2202 695 244 62 _ 255 YJR035w (1085) COG0553 140 1114 60 _ 255 ECs0237 (1404) COG3209 140 1114 60 _ 255 Z0268 (1404) COG3209 1 -2 60 _ 77 Cj0664c (147) COG0359
BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= L102100_2 (148 letters) Database: myva 192,987 sequences; 59,019,183 total letters Score E Sequences producing significant alignments: (bits) Value L102100_2 273 7e-74 SPy1198_2 56 2e-08 SA1805_2 42 4e-04 SPy1486_2 42 7e-04 SPy0657_2 41 8e-04 SPy2125_2 36 0.024 SPy0939_2 36 0.025 all2642 33 0.29 PA1524 31 0.87 FN1589 30 1.6 all3853 29 3.1 ML0406 29 4.3 TVN0993 29 4.5 VC1044 28 4.6 Ta0516m 28 5.1 AF2420_1 28 5.3 YJR035w 28 5.3 ECs0237 28 7.8 Z0268 28 7.8 Cj0664c 28 7.9 # >L102100_2 # Length = 148 # # Score = 273 bits (699), Expect = 7e-74 # Identities = 148/148 (100%), Positives = 148/148 (100%) # # Query: 1 NLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPE 60 # NLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPE # Sbjct: 1 NLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPE 60 # # Query: 61 FPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDF 120 # FPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDF # Sbjct: 61 FPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDF 120 # # Query: 121 YLGQEDNFRIIGPVVDNFEEIEESQIID 148 # YLGQEDNFRIIGPVVDNFEEIEESQIID # Sbjct: 121 YLGQEDNFRIIGPVVDNFEEIEESQIID 148 # # # >SPy1198_2 # Length = 124 # # Score = 56.2 bits (134), Expect = 2e-08 # Identities = 47/131 (35%), Positives = 65/131 (48%), Gaps = 8/131 (6%) # # Query: 12 YAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLH 71 # YA E LSAG G S G + E L YD A+ V G+SMEP + N + # Sbjct: 1 YAYRVYESLSAGTGYSYFGDGNFDVVFYDEQL-EYDFASWVFGDSMEPTYLNGEVVLIKQ 59 # # Query: 72 TGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRII 131 # F G IYA+ + + YIK+VF E++G R+ SLN +Y D + + RII # Sbjct: 60 NSFDYDGAIYAVE----WDGQTYIKKVFREDEG-LRLVSLN--KKYSDKFAPYSEEPRII 112 # # Query: 132 GPVVDNFEEIE 142 # G ++ NF +E # Sbjct: 113 GKIIANFRPLE 123 # # # >SA1805_2 # Length = 86 # # Score = 42.0 bits (97), Expect = 4e-04 # Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 15/94 (15%) # # Query: 46 YDGAARVKGESMEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLG----EERLYIKQVFEE 101 # +D A +V G+SMEP F + I T + I G +G EE Y+K+VF E # Sbjct: 3 HDLALKVNGDSMEPMFKDGEIIFVEKT--------HNIKNGQIGIFIIEEEAYVKKVFVE 54 # # Query: 102 EDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVV 135 # +D + + SLN D Y D + + ++ R+IG V+ # Sbjct: 55 DD-RLTLVSLNKD--YDDLHFYRNESVRLIGKVI 85 # # # >SPy1486_2 # Length = 117 # # Score = 41.6 bits (96), Expect = 7e-04 # Identities = 35/122 (28%), Positives = 59/122 (47%), Gaps = 7/122 (5%) # # Query: 20 LSAGFGQSQS-NTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLHTGFGRSG 78 # ++AG G Q N K + + YD A+V G+SMEP + + L # Sbjct: 1 VAAGLGAYQEDNLHMKVKLRSDDVPDEYDTIAKVAGDSMEPLIQDNDL---LFIKVSSQV 57 # # Query: 79 DIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVDNF 138 # D+ I + + ++K++ + DG + + SLN Y++ YL ++D+ R IG VVD + # Sbjct: 58 DMNDIGIFQVNGKN-FVKKLKRDYDGAWYLQSLN--KSYEEIYLSKDDDIRTIGEVVDIY 114 # # Query: 139 EE 140 # E # Sbjct: 115 RE 116 # # # >SPy0657_2 # Length = 130 # # Score = 41.2 bits (95), Expect = 8e-04 # Identities = 38/127 (29%), Positives = 61/127 (47%), Gaps = 12/127 (9%) # # Query: 21 SAGFGQS-QSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLHTGFGR-SG 78 # ++GFG+ +++ Y YT E YD A ++G+SM P++ + + G SG # Sbjct: 10 ASGFGRGFEADDYDTYTVYTDEEPPHYDYAIGIRGDSMLPKYEQGDMLYIVDKGMSTYSG 69 # # Query: 79 DIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLG---QEDNFRIIGPVV 135 # + + Y K+V+ E DG R+ SLN +Y D ++G ED + I VV # Sbjct: 70 QLCIVVHNG----NTYFKKVYTEHDG-LRLVSLN--KKYSDIFIGYPPAEDTYIKIYDVV 122 # # Query: 136 DNFEEIE 142 # +F IE # Sbjct: 123 GSFTPIE 129 # # # >SPy2125_2 # Length = 103 # # Score = 36.2 bits (82), Expect = 0.024 # Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 27/97 (27%) # # Query: 52 VKGESMEPEFPNFSIATFLHTGFGRSGDIYAI------AEGDLGEERL----YIKQVFEE 101 # V G+SMEPE+ SGD I ++GD+G YIKQ+ # Sbjct: 20 VYGDSMEPEY--------------HSGDYVFIKLSINLSDGDIGVFEYYGDAYIKQLVIN 65 # # Query: 102 EDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVDNF 138 # + G F +HSLN +Y D + ++ +FRIIG V+ +F # Sbjct: 66 DSGAF-LHSLN--DKYDDILIDRDSDFRIIGEVIGSF 99 # # # >SPy0939_2 # Length = 104 # # Score = 36.2 bits (82), Expect = 0.025 # Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 25/99 (25%) # # Query: 52 VKGESMEPEFPNFSIATFLHTGFGRSGDI------YAIAEGDLGEERL----YIKQVFEE 101 # V G+SMEP++ SGD + +GD+G YIKQ+ # Sbjct: 20 VYGDSMEPKY--------------HSGDYVFVKLSVELTDGDIGVFEYYGDAYIKQLLIN 65 # # Query: 102 EDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVDNFEE 140 # + G F +HSLN Y D + ++ +FRIIG V+ ++ E # Sbjct: 66 DKGAF-LHSLNQCGDYPDIPIDRDSDFRIIGEVMGSYRE 103 # # # >all2642 # Length = 1164 # # Score = 32.7 bits (73), Expect = 0.29 # Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%) # # Query: 43 LGRYDGAARVKGESMEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEE 102 # LGR D +++G +EP+ + T L G + + E GE+RL + EE # Sbjct: 939 LGRVDNQVKIRGFRIEPQ----EVETLLCQHPGVRAGVVIVREDQPGEKRLVAYVIPNEE 994 # # Query: 103 DGQFRI-HSLNPDPQ 116 # G+ + S P+PQ # Sbjct: 995 GGEQKFPQSPIPNPQ 1009 # # # >PA1524 # Length = 484 # # Score = 31.2 bits (69), Expect = 0.87 # Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 2/53 (3%) # # Query: 62 PNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRI--HSLN 112 # PN ++ +L G++G A GD G + + ++ EDG RI SLN # Sbjct: 18 PNLTVLDYLRRHLGKTGTKEGCASGDCGACTVVVGELVTGEDGAERIRYRSLN 70 # # # >FN1589 # Length = 219 # # Score = 30.0 bits (66), Expect = 1.6 # Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 12/121 (9%) # # Query: 21 SAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPN--FSIATFLHTGFGRSG 78 # SAG G +T +Y + + G SMEP + F++ +T + ++ # Sbjct: 98 SAGRGYLNMDTPDYYMPILKGNFSKRSFFVEITGNSMEPTLEDGEFALVDPDNTSYSKN- 156 # # Query: 79 DIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPD-PQYKDFYLGQE--DNFRIIGPVV 135 # IY + D G YIK++ E + R+ +L D P Y D + +E + F+I G VV # Sbjct: 157 KIYVVTYNDEG----YIKRL--EMKDKLRVITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210 # # Query: 136 D 136 # + # Sbjct: 211 E 211 # # # >all3853 # Length = 258 # # Score = 29.3 bits (64), Expect = 3.1 # Identities = 13/33 (39%), Positives = 18/33 (54%) # # Query: 98 VFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRI 130 # V + E+G + L PD Y+ F L QED R+ # Sbjct: 167 VQDGEEGATSLGELVPDHHYRSFQLAQEDQIRL 199 # # # >ML0406 # Length = 106 # # Score = 28.9 bits (63), Expect = 4.3 # Identities = 14/37 (37%), Positives = 21/37 (55%) # # Query: 21 SAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESM 57 # +AG + S + G Y A ++TL Y+ A R GES+ # Sbjct: 36 AAGLANAVSTSHGSYCAQFNDTLKMYEDAHRTLGESL 72 # # # >TVN0993 # Length = 396 # # Score = 28.9 bits (63), Expect = 4.5 # Identities = 10/19 (52%), Positives = 15/19 (78%) # # Query: 105 QFRIHSLNPDPQYKDFYLG 123 # Q+R+ +++ DP Y DFYLG # Sbjct: 184 QYRMINIDVDPDYTDFYLG 202 # # # >VC1044 # Length = 253 # # Score = 28.5 bits (62), Expect = 4.6 # Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%) # # Query: 57 MEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFR 107 # ME +FP + + H GFG+ ++ + +G+ G+ L+ + + F+ # Sbjct: 163 MEGDFP-YHVYYLNHCGFGKDNAVHMVFQGEKGKVTLFFTPIHSAQSSLFK 212 # # # >Ta0516m # Length = 396 # # Score = 28.5 bits (62), Expect = 5.1 # Identities = 10/19 (52%), Positives = 15/19 (78%) # # Query: 105 QFRIHSLNPDPQYKDFYLG 123 # Q+R+ +++ DP Y DFYLG # Sbjct: 184 QYRMINVDVDPDYTDFYLG 202 # # # >AF2420_1 # Length = 310 # # Score = 28.5 bits (62), Expect = 5.3 # Identities = 13/37 (35%), Positives = 23/37 (62%) # # Query: 78 GDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPD 114 # G+IY+++ DLGEE++ + + E D + L+PD # Sbjct: 47 GEIYSVSFTDLGEEKVIVLRKVAESDFYRTLFELSPD 83 # # # >YJR035w # Length = 1085 # # Score = 28.5 bits (62), Expect = 5.3 # Identities = 23/73 (31%), Positives = 36/73 (48%), Gaps = 6/73 (8%) # # Query: 73 GFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQE--DNFRI 130 # G R IY + G EE++Y +Q+F+ QF + + DP+ K F+ E D F + # Sbjct: 768 GQKREVSIYRLMVGGSIEEKIYHRQIFK----QFLTNRILTDPKQKRFFKIHELHDLFSL 823 # # Query: 131 IGPVVDNFEEIEE 143 # G + EE+ E # Sbjct: 824 GGENGYSTEELNE 836 # # # >ECs0237 # Length = 1404 # # Score = 27.7 bits (60), Expect = 7.8 # Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%) # # Query: 51 RVKG--ESMEPEFPNFSIATFLHTGFGRSGDIYAIAEGDL 88 # RV G E + PE P + + T + GFGR+ + AEGD+ # Sbjct: 191 RVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDV 230 # # # >Z0268 # Length = 1404 # # Score = 27.7 bits (60), Expect = 7.8 # Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%) # # Query: 51 RVKG--ESMEPEFPNFSIATFLHTGFGRSGDIYAIAEGDL 88 # RV G E + PE P + + T + GFGR+ + AEGD+ # Sbjct: 191 RVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDV 230 # # # >Cj0664c # Length = 147 # # Score = 27.7 bits (60), Expect = 7.9 # Identities = 15/48 (31%), Positives = 26/48 (53%) # # Query: 16 EDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPN 63 # E +E+ G+GQ+ G KA T+E L +Y+ + + E++ E N # Sbjct: 17 EIKEVKDGYGQNFLIAKGFAKAATNEVLRKYESDKKKEAENLRFEIAN 64 # # Database: myva Posted date: Sep 16, 2002 2:25 PM Number of letters in database: 59,019,183 Number of sequences in database: 192,987 Lambda K H 0.315 0.138 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,139,811 Number of Sequences: 192987 Number of extensions: 844195 Number of successful extensions: 1356 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 1335 Number of HSP's gapped (non-prelim): 28 length of query: 148 length of database: 59,019,183 effective HSP length: 99 effective length of query: 49 effective length of database: 39,913,470 effective search space: 1955760030 effective search space used: 1955760030 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 60 (27.7 bits) S2: 60 (27.7 bits)