proteins
| 33 proteins |
K | COG2932 | Predicted transcriptional regulator | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Lactococcus lactis (Lactobacillales | Bacilli) | ||||
| L102100_2 | ||||
148 letters (r) 0
0 699 = ||| 1 L102100_2 (148) = -11
-5 134 = ||| 5 SPy1198_2 (124) = -43
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L102100_2
(148 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
L102100_2 273 7e-74
SPy1198_2 56 2e-08
SA1805_2 42 4e-04
SPy1486_2 42 7e-04
SPy0657_2 41 8e-04
SPy2125_2 36 0.024
SPy0939_2 36 0.025
all2642 33 0.29
PA1524 31 0.87
FN1589 30 1.6
all3853 29 3.1
ML0406 29 4.3
TVN0993 29 4.5
VC1044 28 4.6
Ta0516m 28 5.1
AF2420_1 28 5.3
YJR035w 28 5.3
ECs0237 28 7.8
Z0268 28 7.8
Cj0664c 28 7.9
# >L102100_2
# Length = 148
#
# Score = 273 bits (699), Expect = 7e-74
# Identities = 148/148 (100%), Positives = 148/148 (100%)
#
# Query: 1 NLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPE 60
# NLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPE
# Sbjct: 1 NLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPE 60
#
# Query: 61 FPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDF 120
# FPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDF
# Sbjct: 61 FPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDF 120
#
# Query: 121 YLGQEDNFRIIGPVVDNFEEIEESQIID 148
# YLGQEDNFRIIGPVVDNFEEIEESQIID
# Sbjct: 121 YLGQEDNFRIIGPVVDNFEEIEESQIID 148
#
#
# >SPy1198_2
# Length = 124
#
# Score = 56.2 bits (134), Expect = 2e-08
# Identities = 47/131 (35%), Positives = 65/131 (48%), Gaps = 8/131 (6%)
#
# Query: 12 YAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLH 71
# YA E LSAG G S G + E L YD A+ V G+SMEP + N +
# Sbjct: 1 YAYRVYESLSAGTGYSYFGDGNFDVVFYDEQL-EYDFASWVFGDSMEPTYLNGEVVLIKQ 59
#
# Query: 72 TGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRII 131
# F G IYA+ + + YIK+VF E++G R+ SLN +Y D + + RII
# Sbjct: 60 NSFDYDGAIYAVE----WDGQTYIKKVFREDEG-LRLVSLN--KKYSDKFAPYSEEPRII 112
#
# Query: 132 GPVVDNFEEIE 142
# G ++ NF +E
# Sbjct: 113 GKIIANFRPLE 123
#
#
# >SA1805_2
# Length = 86
#
# Score = 42.0 bits (97), Expect = 4e-04
# Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
#
# Query: 46 YDGAARVKGESMEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLG----EERLYIKQVFEE 101
# +D A +V G+SMEP F + I T + I G +G EE Y+K+VF E
# Sbjct: 3 HDLALKVNGDSMEPMFKDGEIIFVEKT--------HNIKNGQIGIFIIEEEAYVKKVFVE 54
#
# Query: 102 EDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVV 135
# +D + + SLN D Y D + + ++ R+IG V+
# Sbjct: 55 DD-RLTLVSLNKD--YDDLHFYRNESVRLIGKVI 85
#
#
# >SPy1486_2
# Length = 117
#
# Score = 41.6 bits (96), Expect = 7e-04
# Identities = 35/122 (28%), Positives = 59/122 (47%), Gaps = 7/122 (5%)
#
# Query: 20 LSAGFGQSQS-NTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLHTGFGRSG 78
# ++AG G Q N K + + YD A+V G+SMEP + + L
# Sbjct: 1 VAAGLGAYQEDNLHMKVKLRSDDVPDEYDTIAKVAGDSMEPLIQDNDL---LFIKVSSQV 57
#
# Query: 79 DIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVDNF 138
# D+ I + + ++K++ + DG + + SLN Y++ YL ++D+ R IG VVD +
# Sbjct: 58 DMNDIGIFQVNGKN-FVKKLKRDYDGAWYLQSLN--KSYEEIYLSKDDDIRTIGEVVDIY 114
#
# Query: 139 EE 140
# E
# Sbjct: 115 RE 116
#
#
# >SPy0657_2
# Length = 130
#
# Score = 41.2 bits (95), Expect = 8e-04
# Identities = 38/127 (29%), Positives = 61/127 (47%), Gaps = 12/127 (9%)
#
# Query: 21 SAGFGQS-QSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLHTGFGR-SG 78
# ++GFG+ +++ Y YT E YD A ++G+SM P++ + + G SG
# Sbjct: 10 ASGFGRGFEADDYDTYTVYTDEEPPHYDYAIGIRGDSMLPKYEQGDMLYIVDKGMSTYSG 69
#
# Query: 79 DIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLG---QEDNFRIIGPVV 135
# + + Y K+V+ E DG R+ SLN +Y D ++G ED + I VV
# Sbjct: 70 QLCIVVHNG----NTYFKKVYTEHDG-LRLVSLN--KKYSDIFIGYPPAEDTYIKIYDVV 122
#
# Query: 136 DNFEEIE 142
# +F IE
# Sbjct: 123 GSFTPIE 129
#
#
# >SPy2125_2
# Length = 103
#
# Score = 36.2 bits (82), Expect = 0.024
# Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 27/97 (27%)
#
# Query: 52 VKGESMEPEFPNFSIATFLHTGFGRSGDIYAI------AEGDLGEERL----YIKQVFEE 101
# V G+SMEPE+ SGD I ++GD+G YIKQ+
# Sbjct: 20 VYGDSMEPEY--------------HSGDYVFIKLSINLSDGDIGVFEYYGDAYIKQLVIN 65
#
# Query: 102 EDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVDNF 138
# + G F +HSLN +Y D + ++ +FRIIG V+ +F
# Sbjct: 66 DSGAF-LHSLN--DKYDDILIDRDSDFRIIGEVIGSF 99
#
#
# >SPy0939_2
# Length = 104
#
# Score = 36.2 bits (82), Expect = 0.025
# Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 25/99 (25%)
#
# Query: 52 VKGESMEPEFPNFSIATFLHTGFGRSGDI------YAIAEGDLGEERL----YIKQVFEE 101
# V G+SMEP++ SGD + +GD+G YIKQ+
# Sbjct: 20 VYGDSMEPKY--------------HSGDYVFVKLSVELTDGDIGVFEYYGDAYIKQLLIN 65
#
# Query: 102 EDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVDNFEE 140
# + G F +HSLN Y D + ++ +FRIIG V+ ++ E
# Sbjct: 66 DKGAF-LHSLNQCGDYPDIPIDRDSDFRIIGEVMGSYRE 103
#
#
# >all2642
# Length = 1164
#
# Score = 32.7 bits (73), Expect = 0.29
# Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
#
# Query: 43 LGRYDGAARVKGESMEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEE 102
# LGR D +++G +EP+ + T L G + + E GE+RL + EE
# Sbjct: 939 LGRVDNQVKIRGFRIEPQ----EVETLLCQHPGVRAGVVIVREDQPGEKRLVAYVIPNEE 994
#
# Query: 103 DGQFRI-HSLNPDPQ 116
# G+ + S P+PQ
# Sbjct: 995 GGEQKFPQSPIPNPQ 1009
#
#
# >PA1524
# Length = 484
#
# Score = 31.2 bits (69), Expect = 0.87
# Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
#
# Query: 62 PNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRI--HSLN 112
# PN ++ +L G++G A GD G + + ++ EDG RI SLN
# Sbjct: 18 PNLTVLDYLRRHLGKTGTKEGCASGDCGACTVVVGELVTGEDGAERIRYRSLN 70
#
#
# >FN1589
# Length = 219
#
# Score = 30.0 bits (66), Expect = 1.6
# Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
#
# Query: 21 SAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPN--FSIATFLHTGFGRSG 78
# SAG G +T +Y + + G SMEP + F++ +T + ++
# Sbjct: 98 SAGRGYLNMDTPDYYMPILKGNFSKRSFFVEITGNSMEPTLEDGEFALVDPDNTSYSKN- 156
#
# Query: 79 DIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPD-PQYKDFYLGQE--DNFRIIGPVV 135
# IY + D G YIK++ E + R+ +L D P Y D + +E + F+I G VV
# Sbjct: 157 KIYVVTYNDEG----YIKRL--EMKDKLRVITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210
#
# Query: 136 D 136
# +
# Sbjct: 211 E 211
#
#
# >all3853
# Length = 258
#
# Score = 29.3 bits (64), Expect = 3.1
# Identities = 13/33 (39%), Positives = 18/33 (54%)
#
# Query: 98 VFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRI 130
# V + E+G + L PD Y+ F L QED R+
# Sbjct: 167 VQDGEEGATSLGELVPDHHYRSFQLAQEDQIRL 199
#
#
# >ML0406
# Length = 106
#
# Score = 28.9 bits (63), Expect = 4.3
# Identities = 14/37 (37%), Positives = 21/37 (55%)
#
# Query: 21 SAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESM 57
# +AG + S + G Y A ++TL Y+ A R GES+
# Sbjct: 36 AAGLANAVSTSHGSYCAQFNDTLKMYEDAHRTLGESL 72
#
#
# >TVN0993
# Length = 396
#
# Score = 28.9 bits (63), Expect = 4.5
# Identities = 10/19 (52%), Positives = 15/19 (78%)
#
# Query: 105 QFRIHSLNPDPQYKDFYLG 123
# Q+R+ +++ DP Y DFYLG
# Sbjct: 184 QYRMINIDVDPDYTDFYLG 202
#
#
# >VC1044
# Length = 253
#
# Score = 28.5 bits (62), Expect = 4.6
# Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
#
# Query: 57 MEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFR 107
# ME +FP + + H GFG+ ++ + +G+ G+ L+ + + F+
# Sbjct: 163 MEGDFP-YHVYYLNHCGFGKDNAVHMVFQGEKGKVTLFFTPIHSAQSSLFK 212
#
#
# >Ta0516m
# Length = 396
#
# Score = 28.5 bits (62), Expect = 5.1
# Identities = 10/19 (52%), Positives = 15/19 (78%)
#
# Query: 105 QFRIHSLNPDPQYKDFYLG 123
# Q+R+ +++ DP Y DFYLG
# Sbjct: 184 QYRMINVDVDPDYTDFYLG 202
#
#
# >AF2420_1
# Length = 310
#
# Score = 28.5 bits (62), Expect = 5.3
# Identities = 13/37 (35%), Positives = 23/37 (62%)
#
# Query: 78 GDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPD 114
# G+IY+++ DLGEE++ + + E D + L+PD
# Sbjct: 47 GEIYSVSFTDLGEEKVIVLRKVAESDFYRTLFELSPD 83
#
#
# >YJR035w
# Length = 1085
#
# Score = 28.5 bits (62), Expect = 5.3
# Identities = 23/73 (31%), Positives = 36/73 (48%), Gaps = 6/73 (8%)
#
# Query: 73 GFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQE--DNFRI 130
# G R IY + G EE++Y +Q+F+ QF + + DP+ K F+ E D F +
# Sbjct: 768 GQKREVSIYRLMVGGSIEEKIYHRQIFK----QFLTNRILTDPKQKRFFKIHELHDLFSL 823
#
# Query: 131 IGPVVDNFEEIEE 143
# G + EE+ E
# Sbjct: 824 GGENGYSTEELNE 836
#
#
# >ECs0237
# Length = 1404
#
# Score = 27.7 bits (60), Expect = 7.8
# Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
#
# Query: 51 RVKG--ESMEPEFPNFSIATFLHTGFGRSGDIYAIAEGDL 88
# RV G E + PE P + + T + GFGR+ + AEGD+
# Sbjct: 191 RVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDV 230
#
#
# >Z0268
# Length = 1404
#
# Score = 27.7 bits (60), Expect = 7.8
# Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
#
# Query: 51 RVKG--ESMEPEFPNFSIATFLHTGFGRSGDIYAIAEGDL 88
# RV G E + PE P + + T + GFGR+ + AEGD+
# Sbjct: 191 RVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDV 230
#
#
# >Cj0664c
# Length = 147
#
# Score = 27.7 bits (60), Expect = 7.9
# Identities = 15/48 (31%), Positives = 26/48 (53%)
#
# Query: 16 EDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPN 63
# E +E+ G+GQ+ G KA T+E L +Y+ + + E++ E N
# Sbjct: 17 EIKEVKDGYGQNFLIAKGFAKAATNEVLRKYESDKKKEAENLRFEIAN 64
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.315 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,139,811
Number of Sequences: 192987
Number of extensions: 844195
Number of successful extensions: 1356
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 28
length of query: 148
length of database: 59,019,183
effective HSP length: 99
effective length of query: 49
effective length of database: 39,913,470
effective search space: 1955760030
effective search space used: 1955760030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
S2: 60 (27.7 bits)