Vibrio parahaemolyticus RIMD 2210633 chromosome I

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184901-185000 (1-100) [185001-185100 (101-200)] 185101-185200 (201-300) 185201-185300 (301-400) 185301-185400 (401-500)
185401-185500 (501-600) 185501-185600 (601-700) 185601-185700 (701-800) 185701-185800 (801-900) 185801-185900 (901-1000)
185901-186000 (1001-1100) 186001-186100 (1101-1200) 186101-186200 (1201-1300) 186201-186300 (1301-1400) 186301-186400 (1401-1500)
186401-186500 (1501-1600) 186501-186600 (1601-1700) 186601-186700 (1701-1800) 186701-186800 (1801-1900) 186801-186900 (1901-2000)
186901-187000 (2001-2100) 187001-187100 (2101-2200) 187101-187200 (2201-2300) 187201-187300 (2301-2400) 187301-187400 (2401-2500)
187401-187500 (2501-2600) 187501-187600 (2601-2700) 187601-187700 (2701-2800) 187701-187800 (2801-2900) 187801-187900 (2901-3000)
187901-187980 (3001-3080)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185001 hypothetical VP0101 hypothetical protein
similar to GB:AAF93280.1 (AE004101) percent identity 56 in 37 aa
genbank 28896875 NP_796480.1 38 109562 109678
185002 hypothetical VP0103 hypothetical protein
similar to GB:AAF93281.1 (AE004101) percent identity 74 in 251 aa
genbank 28896876 NP_796481.1 253 109950 110711
185003 hypothetical VP0102 hypothetical protein
unknown
genbank 28896877 NP_796482.1 47 110691 110834
185004 hypothetical VP0104 delta-aminolevulinic acid dehydratase
catalyzes the formation of porphobilinogen from 5-aminolevulinate
genbank 28896878 NP_796483.1 353 110893 111954
185005 hypothetical VP0105 hypothetical protein
similar to GB:AAF93284.1 (AE004101) percent identity 61 in 142 aa
genbank 28896879 NP_796484.1 142 112102 112530
185006 hypothetical VP0106 hypothetical protein
unknown
genbank 28896880 NP_796485.1 71 112640 112855
185007 hypothetical VP0107 DNA polymerase I
has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
genbank 28896881 NP_796486.1 931 113147 115942
185008 hypothetical VP0108 hypothetical protein
unknown
genbank 28896882 NP_796487.1 68 116483 116689
185009 hypothetical VP0109 GTP-binding protein
binds guanine nucleotides; depletion results in defective cell division
genbank 28896883 NP_796488.1 219 116700 117359
185010 hypothetical VP0110 cytochrome c4
similar to GB:AAF93290.1 (AE004101) percent identity 84 in 205 aa
genbank 28896884 NP_796489.1 205 117519 118136
185011 hypothetical VP0111 hypothetical protein
unknown
genbank 28896885 NP_796490.1 92 118504 118782
185012 hypothetical VP0112 methyltransferase-related protein
similar to GB:AAF93291.1 (AE004102) percent identity 75 in 216 aa
genbank 28896886 NP_796491.1 224 118899 119573
185013 hypothetical VP0113 hypothetical protein
similar to GB:AAF93292.1 (AE004102) percent identity 60 in 181 aa
genbank 28896887 NP_796492.1 180 119573 120115
185014 hypothetical VP0114 hypothetical protein
similar to GB:AAF93293.1 (AE004102) percent identity 72 in 162 aa
genbank 28896888 NP_796493.1 162 120123 120611
185015 hypothetical VP0115 coproporphyrinogen III oxidase
catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
genbank 28896889 NP_796494.1 463 120797 122188
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185016 hypothetical VP0116 adenosine deaminase
catalyzes the formation of inosine from adenosine
genbank 28896890 NP_796495.1 334 122259 123263
185017 hypothetical VP0117 GGDEF family protein
similar to GB:AAF95889.1 (AE004340) percent identity 51 in 845 aa
genbank 28896891 NP_796496.1 848 123411 125957
185018 hypothetical VP0118 nitrogen regulation protein
similar to GB:AAF95888.1 (AE004340) percent identity 83 in 468 aa
genbank 28896892 NP_796497.1 467 126059 127462
185019 hypothetical VP0119 nitrogen regulation protein
similar to GB:AAA27524.1 (L08499) percent identity 97 in 348 aa
genbank 28896893 NP_796498.1 348 127521 128567
185020 hypothetical VP0120 hypothetical protein
similar to GB:AAF95886.1 (AE004340) percent identity 49 in 190 aa
genbank 28896894 NP_796499.1 193 128699 129280
185021 glnA hypothetical VP0121 glutamine synthetase
forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltran
genbank 28896895 NP_796500.1 469 129479 130888
185022 hypothetical VP0122 BipA protein
similar to GB:AAF61274.1 (AF247673) percent identity 100 in 609 aa
genbank 28896896 NP_796501.1 609 131418 133247
185023 hypothetical VP0123 hypothetical protein
similar to GB:AAF95882.1 (AE004339) percent identity 51 in 176 aa
genbank 28896897 NP_796502.1 180 133320 133862
185024 hypothetical VP0124 hypothetical protein
unknown
genbank 28896898 NP_796503.1 213 133894 134535
185025 rbn hypothetical VP0125 ribonuclease BN
RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease
genbank 28896899 NP_796504.1 314 134570 135514
185026 hypothetical VP0126 D-tyrosyl-tRNA deacylase
Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine
genbank 28896900 NP_796505.1 144 135486 135920
185027 hypothetical VP0127 hypothetical protein
similar to GB:AAF95879.1 (AE004339) percent identity 84 in 304 aa
genbank 28896901 NP_796506.1 305 136029 136946
185028 hypothetical VP0128 hypothetical protein
similar to GB:AAF95878.1 (AE004339) percent identity 38 in 622 aa
genbank 28896902 NP_796507.1 684 136932 138986
185029 hypothetical VP0129 phosphoenolpyruvate carboxykinase
PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
genbank 28896903 NP_796508.1 542 139182 140810
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185030 hslO hypothetical VP0130 Hsp33-like chaperonin
becomes active under oxidative stress; four conserved cysteines bind a zinc atomr when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone prot
genbank 28896904 NP_796509.1 291 141147 142022
185031 hypothetical VP0131 hypothetical protein
similar to GB:AAF95874.1 (AE004339) percent identity 77 in 128 aa
genbank 28896905 NP_796510.1 128 142054 142440
185032 hypothetical VP0132 general secretion pathway protein C
similar to GB:AAF95873.1 (AE004338) percent identity 51 in 283 aa
genbank 28896906 NP_796511.1 307 142696 143619
185033 hypothetical VP0133 general secretion pathway protein D precursor
similar to SP:P45779 percent identity 81 in 674 aa
genbank 28896907 NP_796512.1 675 143656 145683
185034 hypothetical VP0134 general secretion pathway protein E
similar to GB:AAA27518.1 (M96172) percent identity 84 in 491 aa
genbank 28896908 NP_796513.1 500 145683 147185
185035 hypothetical VP0135 general secretion pathway protein F
similar to GB:AAA58787.1 (L33796) percent identity 79 in 405 aa
genbank 28896909 NP_796514.1 405 147185 148402
185036 hypothetical VP0136 general secretion pathway protein G
similar to GB:AAA58788.1 (L33796) percent identity 90 in 144 aa
genbank 28896910 NP_796515.1 147 148464 148907
185037 hypothetical VP0137 general secretion pathway protein H
similar to GB:AAA58789.1 (L33796) percent identity 57 in 195 aa
genbank 28896911 NP_796516.1 198 148938 149534
185038 hypothetical VP0138 general secretion pathway protein I
similar to GB:AAA58790.1 (L33796) percent identity 80 in 108 aa
genbank 28896912 NP_796517.1 109 149581 149910
185039 hypothetical VP0139 general secretion pathway protein J
similar to GB:AAF95867.1 (AE004338) percent identity 62 in 223 aa
genbank 28896913 NP_796518.1 227 149897 150580
185040 hypothetical VP0140 general secretion pathway protein K
similar to GB:AAF95866.1 (AE004338) percent identity 66 in 336 aa
genbank 28896914 NP_796519.1 336 150573 151583
185041 hypothetical VP0141 general secretion pathway protein L
similar to GB:AAF95865.1 (AE004338) percent identity 51 in 406 aa
genbank 28896915 NP_796520.1 404 151540 152754
185042 hypothetical VP0142 general secretion pathway protein M
similar to GB:AAF95864.1 (AE004338) percent identity 53 in 165 aa
genbank 28896916 NP_796521.1 164 152759 153253
185043 hypothetical VP0143 general secretion pathway protein N
similar to GB:AAF95863.1 (AE004338) percent identity 44 in 252 aa
genbank 28896917 NP_796522.1 253 153255 154016
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185044 hypothetical VP0144 CysQ protein
similar to GB:AAF95862.1 (AE004338) percent identity 80 in 275 aa
genbank 28896918 NP_796523.1 275 154302 155129
185045 hypothetical VP0145 MutT/nudix family protein
similar to GB:AAF95861.1 (AE004338) percent identity 78 in 180 aa
genbank 28896919 NP_796524.1 189 155171 155740
185046 hypothetical VP0146 hypothetical protein
similar to GB:AAF95860.1 (AE004338) percent identity 86 in 191 aa
genbank 28896920 NP_796525.1 194 155961 156545
185047 hypothetical VP0147 ComF-related protein
similar to GB:AAF95859.1 (AE004337) percent identity 49 in 238 aa
genbank 28896921 NP_796526.1 241 156643 157368
185048 hypothetical VP0148 BioH protein
similar to GB:AAF95858.1 (AE004337) percent identity 67 in 255 aa
genbank 28896922 NP_796527.1 261 157435 158220
185049 hypothetical VP0149 hypothetical protein
similar to GB:AAF95857.1 (AE004337) percent identity 73 in 156 aa
genbank 28896923 NP_796528.1 154 158344 158808
185050 hypothetical VP0150 hypothetical protein
similar to GB:AAF95856.1 (AE004337) percent identity 86 in 776 aa
genbank 28896924 NP_796529.1 773 158944 161265
185051 hypothetical VP0151 hypothetical protein
similar to GB:AAF96417.1 (AE004382) percent identity 34 in 125 aa
genbank 28896925 NP_796530.1 626 161478 163358
185052 greB hypothetical VP0152 transcription elongation factor GreB
necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary comp
genbank 28896926 NP_796531.1 163 163513 164004
185053 hypothetical VP0153 hypothetical protein
similar to EMB:CAC89429.1 (AJ414143) percent identity 42 in 97 aa
genbank 28896927 NP_796532.1 130 164118 164510
185054 ompR hypothetical VP0154 osmolarity response regulator
part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of om
genbank 28896928 NP_796533.1 239 164729 165448
185055 envZ hypothetical VP0155 osmolarity sensor protein
membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR
genbank 28896929 NP_796534.1 430 165554 166846
185056 hypothetical VP0156 xanthine/uracil permease family protein
similar to GB:AAF95852.1 (AE004337) percent identity 89 in 450 aa
genbank 28896930 NP_796535.1 470 166911 168323
185057 hypothetical VP0157 ATP-dependent DNA helicase RecG
similar to GB:AAF95851.1 (AE004337) percent identity 86 in 691 aa
genbank 28896931 NP_796536.1 693 168535 170616
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185058 hypothetical VP0158 tRNA methyltransferase
similar to EMB:CAD03250.1 (AL627280) percent identity 63 in 228 aa
genbank 28896932 NP_796537.1 227 170735 171418
185059 hypothetical VP0159 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
similar to GB:AAF95850.1 (AE004336) percent identity 90 in 706 aa
genbank 28896933 NP_796538.1 706 171476 173596
185060 rpoZ hypothetical VP0160 DNA-directed RNA polymerase omega subunit
promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
genbank 28896934 NP_796539.1 90 173636 173908
185061 hypothetical VP0161 guanylate kinase
catalyzes the formation of GDP from GMP and ATP
genbank 28896935 NP_796540.1 207 174090 174713
185062 hypothetical VP0162 hypothetical protein
similar to GB:AAF82820.1 (AE003855) percent identity 26 in 331 aa
genbank 28896936 NP_796541.1 404 175019 176233
185063 hypothetical VP0163 putative TonB2 protein
similar to GB:AAF94698.1 (AE004232) percent identity 25 in 210 aa
genbank 28896937 NP_796542.1 210 176246 176878
185064 hypothetical VP0164 TonB system transport protein ExbD2
similar to GB:AAC69455.1 (AF047974) percent identity 56 in 125 aa
genbank 28896938 NP_796543.1 135 176883 177290
185065 hypothetical VP0165 TonB system transport protein ExbB2
similar to GB:AAC69454.1 (AF047974) percent identity 39 in 170 aa
genbank 28896939 NP_796544.1 175 177316 177843
185066 hypothetical VP0166 putative TolR
similar to GB:AAC69453.1 (AF047974) percent identity 35 in 450 aa
genbank 28896940 NP_796545.1 453 177853 179214
185067 hypothetical VP0167 hypothetical protein
similar to GB:AAC69452.1 (AF047974) percent identity 34 in 229 aa
genbank 28896941 NP_796546.1 254 179218 179982
185068 hypothetical VP0168 hypothetical protein
similar to GB:AAG05458.1 (AE004634) percent identity 28 in 916 aa
genbank 28896942 NP_796547.1 866 180055 182655
185069 hypothetical VP0169 hypothetical protein
unknown
genbank 28896943 NP_796548.1 37 183263 183376
185070 hypothetical VP0170 putative transmembrane ABC transporter protein
similar to EMB:CAD14876.1 (AL646063) percent identity 41 in 349 aa
genbank 28896944 NP_796549.1 341 183476 184501
185071 hypothetical VP0171 putative peptide ABC transporter, permease protein
similar to EMB:CAD14877.1 (AL646063) percent identity 43 in 343 aa
genbank 28896945 NP_796550.1 347 184503 185546
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185072 hypothetical VP0172 putative binding protein component of ABC transporter
similar to GB:AAG05199.1 (AE004607) percent identity 24 in 643 aa
genbank 28896946 NP_796551.1 608 185585 187411
185073 hypothetical VP0173 oligopeptide ABC transporter, ATP-binding protein
similar to DBJ:BAB03747.1 (AP001507) percent identity 56 in 272 aa
genbank 28896947 NP_796552.1 279 187439 188278
185074 hypothetical VP0174 oligopeptide ABC transporter, ATP-binding protein
similar to GB:AAD36815.1 (AE001813) percent identity 62 in 224 aa
genbank 28896948 NP_796553.1 244 188419 189153
185075 hypothetical VP0175 hypothetical protein
similar to GB:AAG06791.1 (AE004761) percent identity 30 in 126 aa
genbank 28896949 NP_796554.1 143 189277 189708
185076 hypothetical VP0176 putative alpha helix protein
similar to GB:AAF93385.1 (AE004111) percent identity 87 in 288 aa
genbank 28896950 NP_796555.1 288 189763 190629
185077 rph hypothetical VP0177 ribonuclease PH
RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
genbank 28896951 NP_796556.1 238 190844 191560
185078 pyrE hypothetical VP0178 orotate phosphoribosyltransferase
involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
genbank 28896952 NP_796557.1 213 191665 192306
185079 hypothetical VP0179 lipid A biosynthesis lauroyl acyltransferase
Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
genbank 28896953 NP_796558.1 316 192367 193317
185080 slmA hypothetical VP0180 nucleoid occlusion protein
FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
genbank 28896954 NP_796559.1 196 193323 193913
185081 hypothetical VP0181 phosphopantothenoylcysteine synthase/decarboxylase
catalyzes the conversion of 4'-phosphopantothenate to 4'-phosphopantetheine
genbank 28896955 NP_796560.1 399 194074 195273
185082 hypothetical VP0182 hypothetical protein
unknown
genbank 28896956 NP_796561.1 64 195261 195455
185083 hypothetical VP0183 methyl-accepting chemotaxis protein
similar to GB:AAF93392.1 (AE004111) percent identity 68 in 555 aa
genbank 28896957 NP_796562.1 557 195458 197131
185084 hypothetical VP0184 DNA repair protein RadC
Involved in repair of DNA damage after UV and X-ray irradiation in prokaryotes
genbank 28896958 NP_796563.1 224 197245 197919
185085 hypothetical VP0185 ribosomal protein L28
similar to GB:AAF93394.1 (AE004112) percent identity 92 in 78 aa
genbank 28896959 NP_796564.1 78 198223 198459
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185086 rpmG hypothetical VP0186 50S ribosomal protein L33
similar to GB:AAF93395.1 (AE004112) percent identity 94 in 53 aa
genbank 28896960 NP_796565.1 56 198473 198643
185087 hypothetical VP0187 putative Dca
similar to GB:AAC22666.1 (U32781) percent identity 33 in 518 aa
genbank 28896961 NP_796566.1 510 198731 200263
185088 hypothetical VP0188 hypothetical protein
similar to GB:AAF93396.1 (AE004112) percent identity 49 in 151 aa
genbank 28896962 NP_796567.1 158 200333 200809
185089 hypothetical VP0189 formamidopyrimidine-DNA glycosylase
similar to GB:AAF93397.1 (AE004112) percent identity 74 in 268 aa
genbank 28896963 NP_796568.1 269 200912 201721
185090 hypothetical VP0190 phosphopantetheine adenylyltransferase
catalyzes the reversible formation of dephospho-CoA transfering the adenylyl group from ATP to 4'phosphopantetheine
genbank 28896964 NP_796569.1 167 201797 202300
185091 hypothetical VP0191 putative lipopolysaccharide A protein
similar to GB:AAC43386.1 (U06471) percent identity 41 in 311 aa
genbank 28896965 NP_796570.1 311 202287 203222
185092 hypothetical VP0192 hypothetical protein
similar to GB:AAK95997.1 (AY044868) percent identity 44 in 252 aa
genbank 28896966 NP_796571.1 262 203271 204059
185093 hypothetical VP0193 putative lipopolysaccharide biosynthesis glycosyltransferase
similar to GB:AAF93400.1 (AE004112) percent identity 65 in 252 aa
genbank 28896967 NP_796572.1 255 204056 204823
185094 hypothetical VP0194 putative lipopolysaccharide biosynthesis protein
similar to GB:AAF93401.1 (AE004112) percent identity 65 in 346 aa
genbank 28896968 NP_796573.1 351 204859 205914
185095 hypothetical VP0195 diacylglycerol kinase
similar to GB:AAF96613.1 (AE004401) percent identity 62 in 116 aa
genbank 28896969 NP_796574.1 135 206021 206428
185096 hypothetical VP0196 3-deoxy-D-manno-octulosonic-acid kinase
catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position
genbank 28896970 NP_796575.1 238 206439 207155
185097 hypothetical VP0197 putative capsular polysaccharide biosynthesis protein D
similar to GB:AAB99064.1 (U67549) percent identity 28 in 324 aa
genbank 28896971 NP_796576.1 396 207250 208440
185098 hypothetical VP0198 putative aminotransferase
similar to EMB:CAB73747.1 (AL139078) percent identity 42 in 372 aa
genbank 28896972 NP_796577.1 387 208441 209604
185099 hypothetical VP0199 putative NeuC
similar to GB:AAG29919.1 (AF195053) percent identity 42 in 371 aa
genbank 28896973 NP_796578.1 397 209621 210814
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185100 hypothetical VP0200 putative N-acetylneuraminic acid synthetase
similar to EMB:CAB73754.1 (AL139078) percent identity 51 in 356 aa
genbank 28896974 NP_796579.1 357 210822 211895


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