| 8 proteins |
R | COG3331 | Penicillin-binding protein-related factor A, putative recombinase | Help |
|---|
170 letters
814 = UU297 (170) =
204 = MG352 (166) =
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= UU297
(170 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
UU297 318 3e-87
MG352 83 1e-16
MPN528a 70 2e-12
BH1703 57 1e-08
BH3539 54 7e-08
L131245 49 3e-06
SPy1648 44 1e-04
BS_yppB 40 0.001
L0278 32 0.30
SPy0533 29 2.5
jhp0834 29 3.3
MJ1178 28 5.6
YOL081w 28 5.6
MG344 28 7.3
aq_539 27 9.6
# >UU297
# Length = 170
#
# Score = 318 bits (814), Expect = 3e-87
# Identities = 157/170 (92%), Positives = 157/170 (92%)
#
# Query: 1 MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETXXXX 60
# MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSET
# Sbjct: 1 MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETDYYG 60
#
# Query: 61 XXXXXXXXXEAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQ 120
# EAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQ
# Sbjct: 61 FYKGDYFDFEAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQ 120
#
# Query: 121 QLINYYQKTKRKSIPFQWFKDQCIELEIIFPGVINFKKMINDLKLKYYDD 170
# QLINYYQKTKRKSIPFQWFKDQCIELEIIFPGVINFKKMINDLKLKYYDD
# Sbjct: 121 QLINYYQKTKRKSIPFQWFKDQCIELEIIFPGVINFKKMINDLKLKYYDD 170
#
#
# >MG352
# Length = 166
#
# Score = 83.2 bits (204), Expect = 1e-16
# Identities = 50/164 (30%), Positives = 84/164 (50%)
#
# Query: 1 MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETXXXX 60
# M N N GM LE ++N++I+ + +KR + I +++V G + QKS+T
# Sbjct: 1 MINANRGMLLETIVNQTIARLKDHPDIWLEKRFLPIKPIAFRHAHVSGNVSQKSKTDYYG 60
#
# Query: 61 XXXXXXXXXEAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQ 120
# EAKQTNK++F I QI HQL HL I + G SFL+I F + F +
# Sbjct: 61 IYKGMYFDFEAKQTNKSNFPIAQIAEHQLNHLKRIDQIGGVSFLLIYFQTKDQIFAFHTK 120
#
# Query: 121 QLINYYQKTKRKSIPFQWFKDQCIELEIIFPGVINFKKMINDLK 164
# L+ + + K+I + + + ++ +++PG+I+ +I K
# Sbjct: 121 DLLETIKNQESKTIKRELIEQKSQKVPLLYPGIIDLISIIQSFK 164
#
#
# >MPN528a
# Length = 172
#
# Score = 69.7 bits (169), Expect = 2e-12
# Identities = 50/167 (29%), Positives = 84/167 (49%), Gaps = 5/167 (2%)
#
# Query: 1 MNNKNNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKI--KQKSETXX 58
# M + N GM LE ++N++I + +KR + I + VQG + ++KS+T
# Sbjct: 1 MISANRGMFLETIVNQTIVRLGDHPDIWLEKRYLPIQPTAFKETRVQGALTAQKKSKTDY 60
#
# Query: 59 XXXXXXXXXXX-EAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFII 117
# E KQTNK++F + Q+ HQL HL I++ G SFL+I F +L + +
# Sbjct: 61 YGVYKGEIYFDFETKQTNKSNFALAQLAEHQLKHLKRINEIGGISFLLIYFQVQDLLYAL 120
#
# Query: 118 TFQQLINYY--QKTKRKSIPFQWFKDQCIELEIIFPGVINFKKMIND 162
# + L+ QK K K+I + ++ +I+PGVI+ +I +
# Sbjct: 121 HTKDLLQMIEAQKGKSKTIKRDLIDQKAQKINLIYPGVIDLIDVIEN 167
#
#
# >BH1703
# Length = 199
#
# Score = 56.6 bits (135), Expect = 1e-08
# Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
#
# Query: 5 NNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKI------KQKSETXX 58
# N GM LE IN++ S + +A K+ + I N+D + KQ S T
# Sbjct: 29 NRGMTLESDINETNSYYLTHGRAVIHKKPTPVQIVNVDYPKRSAAVIKEAYFKQPSTTDY 88
#
# Query: 59 XXXXXXXXXXXEAKQT-NKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFII 117
# EAK+T NK SF I+ HQ+ H+ + G F+I+ F ++ +++
# Sbjct: 89 NGVYRGKYLDFEAKETRNKTSFPIQNFHEHQMEHMKKVLAQDGICFVIVRFTTFDETYLL 148
#
# Query: 118 TFQQLINYYQ--KTKRKSIP 135
# +I ++ +TKRKSIP
# Sbjct: 149 DASHVIKAFETKETKRKSIP 168
#
#
# >BH3539
# Length = 168
#
# Score = 54.3 bits (129), Expect = 7e-08
# Identities = 32/144 (22%), Positives = 65/144 (44%), Gaps = 5/144 (3%)
#
# Query: 5 NNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQ-GKIKQKSETXXXXXXX 63
# N GM E L+ + + ++ A +K + + I ++ G ++KS
# Sbjct: 7 NRGMSFEQLVEYTNRCYFIKGMADVRKVATPVKVLRISKGRIRDGFFEKKSTVDFIGVSH 66
#
# Query: 64 XXXXXXEAKQT-NKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQQL 122
# +AK T N+ F + I+PHQ+A L +F ++ F+ + + + +++
# Sbjct: 67 GRAIAFDAKSTRNRTRFPLSNIEPHQMAFLKSWKDQGAIAFFLVEFVKHQEVYFLPYREA 126
#
# Query: 123 INYYQKT---KRKSIPFQWFKDQC 143
# ++++ RKSIP++WF C
# Sbjct: 127 EKWWEEAGEGGRKSIPYEWFVQNC 150
#
#
# >L131245
# Length = 213
#
# Score = 48.9 bits (115), Expect = 3e-06
# Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
#
# Query: 7 GMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDN------SYVQGKIKQKSETXXXX 60
# GM+ E IN + + + A K+ I I +D + +Q S T
# Sbjct: 45 GMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVDYPQRSRAKITEAYFRQASTTDYSG 104
#
# Query: 61 XXXXXXXXXEAKQTN-KNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITF 119
# EAK+T K F +K HQ+ H+ + G +F+++ F N +++
# Sbjct: 105 VYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETYLLPS 164
#
# Query: 120 QQLIN-YYQKTKRKSIPFQWFKDQCIELEIIFPGVINFKKMINDL 163
# LI YY+K KSIP ++ ++E I + +++N L
# Sbjct: 165 SCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKL 209
#
#
# >SPy1648
# Length = 199
#
# Score = 43.5 bits (101), Expect = 1e-04
# Identities = 34/144 (23%), Positives = 58/144 (39%), Gaps = 8/144 (5%)
#
# Query: 5 NNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDN------SYVQGKIKQKSETXX 58
# N GM E IN + + + A K+ + I +D V+ +Q S T
# Sbjct: 26 NRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQASTTDY 85
#
# Query: 59 XXXXXXXXXXXEAKQTN-KNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFII 117
# EAK+T K + +K HQ+ H+ + G F+++ F + +
# Sbjct: 86 CGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYL 145
#
# Query: 118 TFQQLINYYQ-KTKRKSIPFQWFK 140
# Q LI++YQ KS+P + +
# Sbjct: 146 PAQALISFYQIDNGSKSMPIDYIR 169
#
#
# >BS_yppB
# Length = 206
#
# Score = 40.4 bits (93), Expect = 0.001
# Identities = 40/168 (23%), Positives = 69/168 (40%), Gaps = 10/168 (5%)
#
# Query: 5 NNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKI------KQKSETXX 58
# N GM LE +N++ + A K+ + I N+ + KQ S T
# Sbjct: 30 NRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDY 89
#
# Query: 59 XXXXXXXXXXXEAKQT-NKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFII 117
# EAK+T NK SF ++ HQ+ H+ + G F+II + +YF+
# Sbjct: 90 NGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFD-QVYFLE 148
#
# Query: 118 TFQQLINYYQKTK--RKSIPFQWFKDQCIELEIIFPGVINFKKMINDL 163
# + + +K K RKSI ++ + + + I++ +I L
# Sbjct: 149 ADKLFYFWDRKEKNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQL 196
#
#
# >L0278
# Length = 1658
#
# Score = 32.3 bits (72), Expect = 0.30
# Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
#
# Query: 92 LYLIHKN--SGFSFLIICFINYNLYFIITFQQLINYYQKTKRKSIPFQWFKDQCIELEII 149
# +YLIHK +G +F I+ + ++ I ++ Y + + +P +W+ + C +++ +
# Sbjct: 1422 VYLIHKGLENGLAFTIMERVRKGMWNKIPAEEREKYVEAMREHDVP-EWYIESCSKIKYM 1480
#
# Query: 150 FPGVINFKKMINDLKLKYY 168
# FP ++ L++ Y+
# Sbjct: 1481 FPKAHAAAYIMMALRVAYF 1499
#
#
# >SPy0533
# Length = 283
#
# Score = 29.3 bits (64), Expect = 2.5
# Identities = 15/47 (31%), Positives = 27/47 (56%), Gaps = 4/47 (8%)
#
# Query: 91 HLYLIHKNSGFSFLII--CF--INYNLYFIITFQQLINYYQKTKRKS 133
# +L+ + K + L++ C INYN YF++T + L NY ++ K+
# Sbjct: 139 YLFKVEKWGYYEILLLGNCVRTINYNSYFLLTKEMLNNYIYSSRNKT 185
#
#
# >jhp0834
# Length = 136
#
# Score = 28.9 bits (63), Expect = 3.3
# Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
#
# Query: 70 EAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICF 108
# +A+ + KN FL+K ++P QL L L GFSFL F
# Sbjct: 98 QARLSFKNCFLVKSLKPSQLT-LMLTGFLGGFSFLTTGF 135
#
#
# >MJ1178
# Length = 351
#
# Score = 28.1 bits (61), Expect = 5.6
# Identities = 20/56 (35%), Positives = 32/56 (56%), Gaps = 6/56 (10%)
#
# Query: 6 NGMHLEVLINKSISLFNLQYQAFFKKRCVDII---IKNIDNSYV---QGKIKQKSE 55
# NG++ E+L N+ F L AF ++ VDI+ IK+ID ++ GK+ +K E
# Sbjct: 166 NGVNKEILYNEGDYNFGLFVGAFVPQKGVDILIDAIKDIDFNFKLIGDGKLYKKIE 221
#
#
# >YOL081w
# Length = 3079
#
# Score = 28.1 bits (61), Expect = 5.6
# Identities = 34/163 (20%), Positives = 60/163 (35%), Gaps = 46/163 (28%)
#
# Query: 3 NKNNGMHLEV-LINKSISLFNLQYQAFFKKRCVDIIIKNIDNSYVQGKIKQKSETXXXXX 61
# N++N H+ + +INK +S F K D + NSY + +I QKS+
# Sbjct: 2835 NEDNFTHILIFIINKGLS------NPFIKSTAFDFLKMMFRNSYFEHQINQKSD------ 2882
#
# Query: 62 XXXXXXXXEAKQTNKNSFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQ- 120
# H L +++L++ F++ C L + F+
# Sbjct: 2883 -------------------------HYLCYMFLLY------FVLNCNQFEELLGDVDFEG 2911
#
# Query: 121 QLINYYQKTKRKSIPFQWFKDQCIELEI-IFPGVINFKKMIND 162
# +++N K I +W I ++ G I FK + D
# Sbjct: 2912 EMVNIENKNTIPKILLEWLSSDNENANITLYQGAILFKCSVTD 2954
#
#
# >MG344
# Length = 273
#
# Score = 27.7 bits (60), Expect = 7.3
# Identities = 10/27 (37%), Positives = 17/27 (62%)
#
# Query: 4 KNNGMHLEVLINKSISLFNLQYQAFFK 30
# KNN + V++N +FN +Y++F K
# Sbjct: 232 KNNNLQSSVILNSEHQMFNSKYESFCK 258
#
#
# >aq_539
# Length = 285
#
# Score = 27.3 bits (59), Expect = 9.6
# Identities = 11/40 (27%), Positives = 22/40 (54%)
#
# Query: 79 FLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIIT 118
# FL+K + +L H++ + S F + C I + +F+I+
# Sbjct: 71 FLMKHFKDKKLLHVFYSFRISDFRIFLYCSIPFLTFFLIS 110
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.326 0.142 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,631,982
Number of Sequences: 108091
Number of extensions: 342658
Number of successful extensions: 1003
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 15
length of query: 170
length of database: 33,061,072
effective HSP length: 98
effective length of query: 72
effective length of database: 22,468,154
effective search space: 1617707088
effective search space used: 1617707088
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
S2: 59 (27.3 bits)