Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 4 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 1 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig773 | 19 | 4772502..4772578 | 0..0 | 91.29 | 74.01 |
| Ala | GGC | Contig773 | 13 | 1478230..1478306 | 0..0 | 79.81 | 59.05 |
| Ala | TGC | Contig773 | 23 | 5379717..5379645 | 0..0 | 82.19 | 66.81 |
| Arg | ACG | Contig773 | 45 | 479099 ..479027 | 0..0 | 73.29 | 52.37 |
| Arg | CCG | Contig773 | 17 | 4463402..4463473 | 0..0 | 76.81 | 56.28 |
| Arg | CCT | Contig773 | 7 | 505627 ..505699 | 0..0 | 75.64 | 54.63 |
| Arg | TCT | Contig773 | 40 | 1358769..1358697 | 0..0 | 78.89 | 60.45 |
| Asn | GTT | Contig773 | 16 | 3815804..3815876 | 0..0 | 80.33 | 53.04 |
| Asp | GTC | Contig773 | 3 | 139493 ..139567 | 0..0 | 68.41 | 43.76 |
| Cys | GCA | Contig773 | 37 | 1630379..1630308 | 0..0 | 67.59 | 43.13 |
| Gln | CTG | Contig773 | 30 | 4330451..4330380 | 0..0 | 56.13 | 25.71 |
| Gln | TTG | Contig773 | 18 | 4739447..4739518 | 0..0 | 49.38 | 12.00 |
| Glu | CTC | Contig773 | 31 | 4330272..4330200 | 0..0 | 61.64 | 39.75 |
| Glu | TTC | Contig773 | 2 | 122525 ..122600 | 0..0 | 68.19 | 46.90 |
| Gly | CCC | Contig773 | 25 | 5188155..5188082 | 0..0 | 76.41 | 57.55 |
| Gly | GCC | Contig773 | 36 | 1630495..1630423 | 0..0 | 88.54 | 67.79 |
| Gly | TCC | Contig773 | 39 | 1436204..1436131 | 0..0 | 74.88 | 57.05 |
| His | GTG | Contig773 | 41 | 1235504..1235429 | 0..0 | 85.61 | 65.21 |
| Ile | GAT | Contig773 | 1 | 12071 ..12144 | 0..0 | 89.56 | 65.76 |
| Leu | CAA | Contig773 | 34 | 1940591..1940516 | 0..0 | 47.85 | 26.32 |
| Leu | CAG | Contig773 | 24 | 5294727..5294645 | 0..0 | 61.94 | 35.19 |
| Leu | GAG | Contig773 | 15 | 2386272..2386356 | 0..0 | 59.02 | 32.58 |
| Leu | TAA | Contig773 | 28 | 4684821..4684744 | 0..0 | 42.23 | 18.99 |
| Leu | TAG | Contig773 | 43 | 1054608..1054525 | 0..0 | 75.78 | 49.52 |
| Lys | CTT | Contig773 | 42 | 1225567..1225492 | 0..0 | 80.74 | 54.04 |
| Lys | TTT | Contig773 | 22 | 5179513..5179585 | 0..0 | 82.95 | 57.45 |
| Met | CAT | Contig773 | 10 | 654355 ..654431 | 0..0 | 83.57 | 62.89 |
| Met | CAT | Contig773 | 29 | 4529737..4529661 | 0..0 | 87.26 | 62.61 |
| Met | CAT | Contig773 | 32 | 4032272..4032196 | 0..0 | 97.81 | 79.83 |
| Phe | GAA | Contig773 | 4 | 139620 ..139696 | 0..0 | 86.70 | 65.69 |
| Pro | CGG | Contig773 | 27 | 5103682..5103606 | 0..0 | 81.88 | 59.26 |
| Pro | GGG | Contig773 | 35 | 1749880..1749807 | 0..0 | 78.76 | 56.97 |
| Pro | TGG | Contig773 | 12 | 1436252..1436327 | 0..0 | 75.15 | 52.07 |
| Pseudo | GAA | Contig773 | 5 | 158739 ..158812 | 0..0 | 23.63 | 25.55 |
| Ser | CGA | Contig773 | 46 | 324908 ..324819 | 0..0 | 64.32 | 30.71 |
| Ser | GCT | Contig773 | 44 | 498198 ..498108 | 0..0 | 60.33 | 26.00 |
| Ser | GGA | Contig773 | 6 | 311734 ..311821 | 0..0 | 65.47 | 30.64 |
| Ser | TGA | Contig773 | 26 | 5171213..5171125 | 0..0 | 52.89 | 18.32 |
| Thr | CGT | Contig773 | 21 | 5147773..5147844 | 0..0 | 83.89 | 62.82 |
| Thr | GGT | Contig773 | 9 | 654180 ..654255 | 0..0 | 83.36 | 54.77 |
| Thr | TGT | Contig773 | 20 | 4885726..4885801 | 0..0 | 94.44 | 72.72 |
| Trp | CCA | Contig773 | 11 | 657485 ..657557 | 0..0 | 83.94 | 62.83 |
| Tyr | GTA | Contig773 | 8 | 650227 ..650311 | 0..0 | 63.17 | 28.63 |
| Val | CAC | Contig773 | 14 | 1632926..1632997 | 0..0 | 77.79 | 51.71 |
| Val | GAC | Contig773 | 38 | 1630294..1630220 | 0..0 | 79.84 | 55.62 |
| Val | TAC | Contig773 | 33 | 3618900..3618829 | 0..0 | 85.67 | 66.23 |
tRNA Models
Contig773.trna1 (12071-12144) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (12105-12107) Score: 89.56
HMM Sc=65.76 Sec struct Sc=23.80
* | * | * | * | * | * | * |
Seq: GGACCTATAGCTCAGTCGGTtAGAGCGCTTCCCTGATAAGGAAGAGGtCGGTGGTTCAAGTCCACCTAGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna2 (122525-122600) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (122559-122561) Score: 68.19
HMM Sc=46.90 Sec struct Sc=21.29
* | * | * | * | * | * | * | *
Seq: GCCCCCATCGTCTAGCGGCccAGGACGTCGCCCTTTCAAGGCGGTAGCACGGGTTCGAATCCCGTTGGGGGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig773.trna3 (139493-139567) Length: 75 bp
Type: Asp Anticodon: GTC at 36-38 (139528-139530) Score: 68.41
HMM Sc=43.76 Sec struct Sc=24.65
* | * | * | * | * | * | * |
Seq: GGTCCCGTGGTGAAGCCtGGAgTTCACGCCGCCCTGTCAAGGCGGAGGtCGCGGGTTCGAATCCCGTCGGGACCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna4 (139620-139696) Length: 77 bp
Type: Phe Anticodon: GAA at 35-37 (139654-139656) Score: 86.70
HMM Sc=65.69 Sec struct Sc=21.01
* | * | * | * | * | * | * | *
Seq: GGGCAGGTAGCTCAGTCGGTaCGAGCGTCCGCCTGAAAAGCGGAAGGtCGGCGGTTCGACCCCGCCCCTGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna5 (158739-158812) Length: 74 bp
Type: Phe Anticodon: GAA at 32-34 (158770-158772) Score: 23.63
Possible pseudogene: HMM Sc=25.55 Sec struct Sc=-1.92
* | * | * | * | * | * | * |
Seq: GCGGACGTCGAAATGACGGTcATTTCGGCCTGAAAAGCGGAAGGtCGGCGGTTCGACCCCGCCCCTGCCCACCA
Str: >.>.>.>..>>>>.........<<<<.>>.......<<........>>>>>.......<<<<<<.<.<.<....
Contig773.trna6 (311734-311821) Length: 88 bp
Type: Ser Anticodon: GGA at 35-37 (311768-311770) Score: 65.47
HMM Sc=30.64 Sec struct Sc=34.83
* | * | * | * | * | * | * | * | *
Seq: GGAGGATTCGCCTAGTGGCctAGGGCGCACGCTTGGAAAGCGTGTTGGGGGCAACCCCTCGCGAGTTCGAATCTCGCATCCTCCGCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig773.trna7 (505627-505699) Length: 73 bp
Type: Arg Anticodon: CCT at 34-36 (505660-505662) Score: 75.64
HMM Sc=54.63 Sec struct Sc=21.01
* | * | * | * | * | * | * |
Seq: GCCCCAGTAGCTCAGTGGAtAGAGCGACCGCCTCCTAAGCGGTAGGcCGCAGGTCCGATTCCTGCCTGGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna8 (650227-650311) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (650261-650263) Score: 63.17
HMM Sc=28.63 Sec struct Sc=34.54
* | * | * | * | * | * | * | * |
Seq: GGCAGGTTGCCCGAGCGGCcaAAGGGAGCGGTCTGTAAAACCGTCGGCTCAGCCTaCGATGGTTCGAATCCATCACCTGCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
Contig773.trna9 (654180-654255) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (654213-654215) Score: 83.36
HMM Sc=54.77 Sec struct Sc=28.59
* | * | * | * | * | * | * | *
Seq: GCCCCTTTAGCTCAGTCGGCAGAGCGTCTCCATGGTAAGGAGAAGGtCTACGGTTCGATTCCGTAAAGGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna10 (654355-654431) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (654389-654391) Score: 83.57
HMM Sc=62.89 Sec struct Sc=20.68
* | * | * | * | * | * | * | *
Seq: AGCGGTGTAGCTCAGTCtGGCAGAGCAAGCGGCTCATAATCGCTGTGtCGCCGGTTCAAGTCCGGCCACCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna11 (657485-657557) Length: 73 bp
Type: Trp Anticodon: CCA at 34-36 (657518-657520) Score: 83.94
HMM Sc=62.83 Sec struct Sc=21.11
* | * | * | * | * | * | * |
Seq: AGGGGCGTGGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGCGGtTGCAGGTTCGAGTCCTGTCGCCCCTG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna12 (1436252-1436327) Length: 76 bp
Type: Pro Anticodon: TGG at 34-36 (1436285-1436287) Score: 75.15
HMM Sc=52.07 Sec struct Sc=23.08
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGTAGTGGCtAGCGCGCCTGCTTTGGGTGCAGGAGAtCGGGAGTTCGAGTCTCCCCGCCCCGACCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna13 (1478230-1478306) Length: 77 bp
Type: Ala Anticodon: GGC at 35-37 (1478264-1478266) Score: 79.81
HMM Sc=59.05 Sec struct Sc=20.76
* | * | * | * | * | * | * | *
Seq: GGGGCTGTGGCGCAGTCtGGTAGCGCATCACACTGGCAGTGTGAGGGtCAGGGGTTCGAATCCCCTCAGCTCCACCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna14 (1632926-1632997) Length: 72 bp
Type: Val Anticodon: CAC at 33-35 (1632958-1632960) Score: 77.79
HMM Sc=51.71 Sec struct Sc=26.08
* | * | * | * | * | * | * |
Seq: GGGCGTATAGCTCAGTGGTAGAGCGCTGCCTTCACACGGCAGAGGtCCGTGGTTCGAAACCACGTACGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna15 (2386272-2386356) Length: 85 bp
Type: Leu Anticodon: GAG at 34-36 (2386305-2386307) Score: 59.02
HMM Sc=32.58 Sec struct Sc=26.44
* | * | * | * | * | * | * | * |
Seq: GTCCGGGTGGCGGAATGGCaGACGCGCTAGCTTGAGGTGCTAGTGCCCTTTAACGGGCGTGGGGGTTCAAGTCCCCCCTCGGACA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<.
Contig773.trna16 (3815804-3815876) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (3815837-3815839) Score: 80.33
HMM Sc=53.04 Sec struct Sc=27.29
* | * | * | * | * | * | * |
Seq: TCCCGCGTAGCTCAATTGGCAGAGCAGCCGGCTGTTAACCGGCAGGtTATAGGTTCGAGTCCTATCGCGGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna17 (4463402-4463473) Length: 72 bp
Type: Arg Anticodon: CCG at 34-36 (4463435-4463437) Score: 76.81
HMM Sc=56.28 Sec struct Sc=20.53
* | * | * | * | * | * | * |
Seq: GCCCCCGTAGCTCAGGGGAtAGAGCACCGCCCTCCGGAGGCGGGTGCGCAGGTTCGAATCCTGCCGGGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig773.trna18 (4739447-4739518) Length: 72 bp
Type: Gln Anticodon: TTG at 34-36 (4739480-4739482) Score: 49.38
HMM Sc=12.00 Sec struct Sc=37.38
* | * | * | * | * | * | * |
Seq: TCCGCCGTAGTGTAATCGGCAGCACAGGAGATTTTGGTTCTCTTAGTCCACGTTCGAGTCGTGGCGGCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig773.trna19 (4772502-4772578) Length: 77 bp
Type: Ala Anticodon: CGC at 35-37 (4772536-4772538) Score: 91.29
HMM Sc=74.01 Sec struct Sc=17.28
* | * | * | * | * | * | * | *
Seq: GGGGGTGTAGCTCAGCCtGGTAGAGCGCCTCCCTCGCACGGAGGAGGcCAGGGGTTCGAGTCCCCTCACCTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna20 (4885726-4885801) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (4885759-4885761) Score: 94.44
HMM Sc=72.72 Sec struct Sc=21.72
* | * | * | * | * | * | * | *
Seq: GCCGGCGTGGCGCAATTGGTAGCGCACTCGACTTGTAATCGAGCGGtTAGGGGTTCGAGTCCCCTCGCCGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna21 (5147773-5147844) Length: 72 bp
Type: Thr Anticodon: CGT at 33-35 (5147805-5147807) Score: 83.89
HMM Sc=62.82 Sec struct Sc=21.07
* | * | * | * | * | * | * |
Seq: GCCGGAGTAGCTCAGTGGCAGAGCAATCGCCTCGTAAGCGATAGGtCGCGGGTTCAATCCCCGCCTCCGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna22 (5179513-5179585) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (5179546-5179548) Score: 82.95
HMM Sc=57.45 Sec struct Sc=25.50
* | * | * | * | * | * | * |
Seq: GGGCCGTTAGCTCAATTGGCAGAGCAGCCGGCTTTTAACCGGCGAGtTCAGGGTTCGAGTCCCTGACGGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna23 (5379717-5379645) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (5379684-5379682) Score: 82.19
HMM Sc=66.81 Sec struct Sc=15.38
* | * | * | * | * | * | * |
Seq: GGGGGCGTAGCTCAATTGGCAGAGCACTGCCTTTGCAAGGCAGGGGtTAGGGGTTCGAGTCCCCTCGTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna24 (5294727-5294645) Length: 83 bp
Type: Leu Anticodon: CAG at 34-36 (5294694-5294692) Score: 61.94
HMM Sc=35.19 Sec struct Sc=26.75
* | * | * | * | * | * | * | * |
Seq: GGGCGAGTGGCGGAATGGCaGACGCGCACGGTTCAGGTCCGTGTGTCCTAGCGGACGTGGGGGTTCAACTCCCCCCTCGCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig773.trna25 (5188155-5188082) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (5188123-5188121) Score: 76.41
HMM Sc=57.55 Sec struct Sc=18.86
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGTTCAGAGGCAGAACACGAGCTTCCCAAGCTTGCAACGCGGGTTCGATTCCCGTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig773.trna26 (5171213-5171125) Length: 89 bp
Type: Ser Anticodon: TGA at 35-37 (5171179-5171177) Score: 52.89
HMM Sc=18.32 Sec struct Sc=34.57
* | * | * | * | * | * | * | * | *
Seq: GGAGGGCTCGCCTAGTGGCcgATGGCGGCGGTCTTGAAAACCGCTACGGGGAGTGATCCTCGtCGTGGGTTCGAATCCCACGCCCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<...>>>>>.......<<<<<<<<<<<<.
Contig773.trna27 (5103682-5103606) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (5103648-5103646) Score: 81.88
HMM Sc=59.26 Sec struct Sc=22.62
* | * | * | * | * | * | * | *
Seq: CGGGGTGTGGCGCAGCTtGGTAGCGCGCTTCGTTCGGGACGAAGAGGtCGTGGGTTCGAATCCCGCCACCCCGACCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna28 (4684821-4684744) Length: 78 bp
Type: Leu Anticodon: TAA at 35-37 (4684787-4684785) Score: 42.23
HMM Sc=18.99 Sec struct Sc=23.24
* | * | * | * | * | * | * | *
Seq: GCCGGTGTATCCCAACTGGTaGAGGAGGCTGTCCTAAAAACAGCTCGAGTGTCGGTTCGACTCCGACCACCGGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<<<<....
Contig773.trna29 (4529737-4529661) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (4529703-4529701) Score: 87.26
HMM Sc=62.61 Sec struct Sc=24.65
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCTcGGTAGCTCGCTGGGCTCATAACCCAGAGGtCACAGGTTCAAATCCTGTCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig773.trna30 (4330451-4330380) Length: 72 bp
Type: Gln Anticodon: CTG at 34-36 (4330418-4330416) Score: 56.13
HMM Sc=25.71 Sec struct Sc=30.42
* | * | * | * | * | * | * |
Seq: TGGGGTATGGGGTAATTGGCAGCCCAACGGATTCTGGCTCCGTTAGTCTAGGTTCGAGTCCTGGTACCCCAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig773.trna31 (4330272-4330200) Length: 73 bp
Type: Glu Anticodon: CTC at 35-37 (4330238-4330236) Score: 61.64
HMM Sc=39.75 Sec struct Sc=21.89
* | * | * | * | * | * | * |
Seq: GGCCCCGTCGTCTAGCGGCccAGGACGCCGCCCTCTCAAGGCGGTAGCGCCGGTTCGAATCCGGTCGGGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig773.trna32 (4032272-4032196) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (4032238-4032236) Score: 97.81
HMM Sc=79.83 Sec struct Sc=17.98
* | * | * | * | * | * | * | *
Seq: GGGGCGGTAGCTCAGCCGGTtAGAGCAGCGGACTCATAATCCGTCGGtCGTGGGTTCGAGCCCCACCCGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna33 (3618900-3618829) Length: 72 bp
Type: Val Anticodon: TAC at 33-35 (3618868-3618866) Score: 85.67
HMM Sc=66.23 Sec struct Sc=19.44
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGAAGAGCGCTCGCCTTACAAGCGAGTGGtCGCAGGTTCGATCCCTGCCGCGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna34 (1940591-1940516) Length: 76 bp
Type: Leu Anticodon: CAA at 34-36 (1940558-1940556) Score: 47.85
HMM Sc=26.32 Sec struct Sc=21.53
* | * | * | * | * | * | * | *
Seq: GCCCCGGTACTCCAACGGCaGAGAGACGGTGCTCAAACCACCGACAgTGTGGGTTCGAATCCCACCCGGGGTACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna35 (1749880-1749807) Length: 74 bp
Type: Pro Anticodon: GGG at 35-37 (1749846-1749844) Score: 78.76
HMM Sc=56.97 Sec struct Sc=21.79
* | * | * | * | * | * | * |
Seq: CGGGACGTGGCGCAGCTtGGTAGCGCACCAGACTGGGGGTCTGGGGGtCGCAGGTTCAAATCCTGTCGTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna36 (1630495-1630423) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (1630462-1630460) Score: 88.54
HMM Sc=67.79 Sec struct Sc=20.75
* | * | * | * | * | * | * |
Seq: GCGGACGTGGCTCAGTTGGTAGAGCATCACCTTGCCAAGGTGAGGGtCGCGGGTTCGAATCCCGTCGTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna37 (1630379-1630308) Length: 72 bp
Type: Cys Anticodon: GCA at 34-36 (1630346-1630344) Score: 67.59
HMM Sc=43.13 Sec struct Sc=24.46
* | * | * | * | * | * | * |
Seq: GGCGGAGTGGCCGAGTGGTtTAGGCAAGGGCCTGCAAAGCCCTGTACGCGGGTTCGATTCCCGCCTCCGCCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig773.trna38 (1630294-1630220) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (1630262-1630260) Score: 79.84
HMM Sc=55.62 Sec struct Sc=24.22
* | * | * | * | * | * | * |
Seq: GGGCGATTAGCTCAGTGGGAGAGCGCTACCTTGACACGGTAGAGGtCACTGGTTCAATCCCAGTATCGCCCACCG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna39 (1436204-1436131) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (1436172-1436170) Score: 74.88
HMM Sc=57.05 Sec struct Sc=17.83
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGCAGAGCCCCAGCCTTCCAAGCTGGCCATGCCGGTTCGATCCCGGTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig773.trna40 (1358769-1358697) Length: 73 bp
Type: Arg Anticodon: TCT at 34-36 (1358736-1358734) Score: 78.89
HMM Sc=60.45 Sec struct Sc=18.44
* | * | * | * | * | * | * |
Seq: GCGCCCGTAGCTCAGTGGAtAGAGCGAGTGCCTTCTAAGCACCAGGtCGCAGGTTCGATCCCTGCCGGGCGCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.
Contig773.trna41 (1235504-1235429) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (1235471-1235469) Score: 85.61
HMM Sc=65.21 Sec struct Sc=20.40
* | * | * | * | * | * | * | *
Seq: GTGGGTGTAGCTCAGCTGGTAGAGCACCGGGTTGTGGTCCCGGTGGcCGCGGGTTCAAGTCCCGTCACCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna42 (1225567-1225492) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (1225534-1225532) Score: 80.74
HMM Sc=54.04 Sec struct Sc=26.70
* | * | * | * | * | * | * | *
Seq: GCGCCGCTAGCTCAATTGGCAGAGCAGCGGACTCTTAATCCGCGGGtTCGGGGTTCAAGTCCCTGGCGGCGCACCC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig773.trna43 (1054608-1054525) Length: 84 bp
Type: Leu Anticodon: TAG at 34-36 (1054575-1054573) Score: 75.78
HMM Sc=49.52 Sec struct Sc=26.26
* | * | * | * | * | * | * | * |
Seq: GCGGGAGTGGCGGAATGGCaGACGCAGCAGACTTAGGATCTGCCGCCTTCGGGCGTGGGGGTTCAAGTCCCCCCTCCCGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....
Contig773.trna44 (498198-498108) Length: 91 bp
Type: Ser Anticodon: GCT at 37-39 (498162-498160) Score: 60.33
HMM Sc=26.00 Sec struct Sc=34.33
* | * | * | * | * | * | * | * | * |
Seq: GGAGGCTTCGCCTAGTCcGGTctATGGCGCCGCACTGCTAATGCGGTTGGGGGCATACACCCCCTCCGGGGTTCAAATCCCCGAGCCTCCG
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>......<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig773.trna45 (479099-479027) Length: 73 bp
Type: Arg Anticodon: ACG at 34-36 (479066-479064) Score: 73.29
HMM Sc=52.37 Sec struct Sc=20.92
* | * | * | * | * | * | * |
Seq: GCGCTCGTAGCTCAACGGAcAGAGCATCTGACTACGGATCAGAAGGtTGGGGGTTCGAGTCCCTCCGAGCGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig773.trna46 (324908-324819) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (324874-324872) Score: 64.32
HMM Sc=30.71 Sec struct Sc=33.61
* | * | * | * | * | * | * | * | *
Seq: GGTGGAGTCGCCTAGTGGCcgAGGGCGCACGCCTCGAAAGCGTGTGAGGGGGCAACCCCTCCGTGGGTTCAAATCCCACCTCCACCGCCC
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
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