606 - Ear tissue cDNA library from Schmidt lab

Library Description

Organism:	Zea mays
Cultivar:	Ohio43
Developmental stage:	ear length from 0.5 cm - 2.0 cm
Organ:	immature ear
Tissue:	mixed
Vector:	pBK-CMV
Vector type:	phagemid
Cloning site 1:	EcoRI
Cloning site 2:	XhoI
Lab host:	XLOLR (Stratagene)

Mixed ear tissue cDNA library from Schmidt lab

Source: Walbot V, Stanford University

Gene Content Analysis

5,282 ESTs from this library were grouped into 2,445 UniGene entries (putative genes) [UniGene build #74, 02-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs	TPM	UniGene Entry
135	25559	Zm.93853	Clone 1468743 mRNA sequence.
69	13063	Zm.80511	Clone 1474121 mRNA sequence.
48	9087	Zm.72713	Clone 1479657 mRNA sequence.
48	9087	Zm.70437	Clone 1472803 mRNA sequence.
48	9087	Zm.6905	Clone 210720 mRNA sequence.
44	8330	Zm.24801	Clone 220230 mRNA sequence.
40	7573	Zm.80638	Clone 1443812 mRNA sequence.
37	7005	Zm.23514	Clone 461534 mRNA sequence.
30	5680	Zm.94122	Clone 210454 mRNA sequence.
28	5301	Zm.72311	Clone 259872 mRNA sequence.
26	4922	Zm.93833	Transcribed locus, strongly similar to NP_001105440.1 Alpha-tubulin #3 [Zea mays].
26	4922	Zm.16994	Clone 1470278 mRNA sequence.
25	4733	Zm.94123	Transcribed locus, moderately similar to NP_001063217.1 Os09g0424300 [Oryza sativa (japonica cultivar-group)].
25	4733	Zm.93758	Clone 210108 mRNA sequence.
24	4544	Zm.94132	Elongation factor 1 alpha (LOC542620), mRNA.
24	4544	Zm.93704	Histone H2B.2 (LOC100193014), mRNA.
24	4544	Zm.82266	Clone 1472828 mRNA sequence.
24	4544	Zm.23253	Histone H4 (H4C14), mRNA.
23	4354	Zm.93669	Clone 1706530 mRNA sequence.
22	4165	Zm.93678	Clone 322935 mRNA sequence.
21	3976	Zm.2986	Clone 237754 unknown mRNA.
20	3786	Zm.79462	Hypothetical protein LOC100192516 (LOC100192516), mRNA.
20	3786	Zm.12583	Clone 1368005 mRNA sequence.
19	3597	Zm.94720	Clone 331385 unknown mRNA.
19	3597	Zm.4590	Clone 1447090 unknown mRNA.
19	3597	Zm.103653	Clone Contig574 mRNA sequence.
17	3218	Zm.72560	Hypothetical protein LOC100193571 (LOC100193571), mRNA.
16	3029	Zm.94368	Clone 311734 mRNA sequence.
14	2651	Zm.93907	Clone 225046 mRNA sequence.
14	2651	Zm.93780	Clone 1282294 unknown mRNA.
14	2651	Zm.93705	Clone 1379435 unknown mRNA.
14	2651	Zm.86975	Clone EL01N0531G01.c mRNA sequence.
14	2651	Zm.67235	Clone 290157 mRNA sequence.
13	2461	Zm.93740	Clone 374035 mRNA sequence.
13	2461	Zm.93597	General regulatory factor1 (grf1), mRNA.
13	2461	Zm.84727	Clone Contig525 mRNA sequence.
13	2461	Zm.729	Clone 1292509 unknown mRNA.
13	2461	Zm.72897	Clone 351831 unknown mRNA.
13	2461	Zm.5083	Clone 321747 mRNA sequence.
13	2461	Zm.2903	Clone 246268 mRNA sequence.
12	2272	Zm.94710	Clone 239250 unknown mRNA.
12	2272	Zm.87072	Clone 284009 mRNA sequence.
12	2272	Zm.81469	Clone 3256 mRNA sequence.
12	2272	Zm.21123	1-deoxy-D-xylulose 5-phosphate synthase 2 (dxs2).
12	2272	Zm.19682	Hypothetical protein LOC100193556 (LOC100193556), mRNA.
11	2083	Zm.93976	Clone 1283629 unknown mRNA.
11	2083	Zm.8612	Clone 1061943 unknown mRNA.
11	2083	Zm.84503	Clone 284926 mRNA sequence.
11	2083	Zm.83030	Clone EL01N0413F10 mRNA sequence.
11	2083	Zm.80691	Clone 1283595 unknown mRNA.
11	2083	Zm.78127	Clone 1478218 mRNA sequence.
11	2083	Zm.3765	Clone 996647 mRNA sequence.
11	2083	Zm.137	Clone 284027 mRNA sequence.
11	2083	Zm.121487	Clone 1456465 unknown mRNA.
10	1893	Zm.94175	Clone 1633374 mRNA sequence.
10	1893	Zm.94140	Transcribed locus, strongly similar to NP_001049556.1 Os03g0248600 [Oryza sativa (japonica cultivar-group)].
10	1893	Zm.85733	Clone 1388537 unknown mRNA.
10	1893	Zm.83337	Clone 400752 mRNA sequence.
10	1893	Zm.651	Clone 365297 mRNA sequence.
10	1893	Zm.6419	Clone 236919 unknown mRNA.
10	1893	Zm.6183	Clone 229229 unknown mRNA.
10	1893	Zm.19960	Hypothetical protein LOC100191561 (LOC100191561), mRNA.
10	1893	Zm.13491	Clone 279123 unknown mRNA.
9	1704	Zm.93786	Transcribed locus, strongly similar to NP_196543.1 ACT7 (actin 7) [Arabidopsis thaliana].
9	1704	Zm.82576	Clone 218074 mRNA sequence.
9	1704	Zm.6278	Clone 441778 mRNA sequence.
9	1704	Zm.6095	Clone 1618379 mRNA sequence.
9	1704	Zm.4986	Clone 1534574 mRNA sequence.
9	1704	Zm.4650	Clone 426452 mRNA sequence.
9	1704	Zm.3077	Full-length cDNA clone ZM_BFb0002O09.
9	1704	Zm.20018	Clone 1472628 mRNA sequence.
8	1515	Zm.94718	Clone 490888 mRNA sequence.
8	1515	Zm.94261	Clone 391080 unknown mRNA.
8	1515	Zm.93715	Clone 272256 unknown mRNA.
8	1515	Zm.84143	Full-length cDNA clone ZM_BFb0220H18.
8	1515	Zm.72831	Clone 235328 mRNA sequence.
8	1515	Zm.67715	Hypothetical protein LOC100192688 (LOC100192688), mRNA.
8	1515	Zm.67239	Clone 325614 mRNA sequence.
8	1515	Zm.6306	Full-length cDNA clone ZM_BFc0068C09.
8	1515	Zm.20148	Clone 645166 mRNA sequence.
8	1515	Zm.19807	Clone 701784 mRNA sequence.
8	1515	Zm.19773	Hypothetical protein LOC100192792 (LOC100192792), mRNA.
8	1515	Zm.121880	Clone 232986 unknown mRNA.
7	1325	Zm.93921	Clone 1542814 mRNA sequence.
7	1325	Zm.93855	Hypothetical protein LOC100192809 (LOC100192809), mRNA.
7	1325	Zm.92723	Clone 1479518 mRNA sequence.
7	1325	Zm.87312	Clone 492601 mRNA sequence.
7	1325	Zm.84048	Clone 1470241 mRNA sequence.
7	1325	Zm.81280	Clone 207950 mRNA sequence.
7	1325	Zm.80965	Clone 1537499 mRNA sequence.
7	1325	Zm.71767	Clone 1283941 unknown mRNA.
7	1325	Zm.67104	Clone 1392999 unknown mRNA.
7	1325	Zm.20180	Clone 208460 unknown mRNA.
7	1325	Zm.1513	Clone 220235 unknown mRNA.
7	1325	Zm.14436	Clone 219143 unknown mRNA.
7	1325	Zm.103315	Clone 490661 mRNA sequence.
6	1136	Zm.95815	Transcribed locus, strongly similar to NP_195870.1 HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding [Arabidopsis thaliana].
6	1136	Zm.94987	Clone 679650 mRNA sequence.
6	1136	Zm.93823	Hypothetical protein LOC100193269 (LOC100193269), mRNA.
6	1136	Zm.93820	Clone 244217 mRNA sequence.