Reference SNP(refSNP) Cluster Report: rs3073042

Reference SNP(refSNP) Cluster Report: rs3073042

refSNP ID: rs3073042
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	102/129
Map to Genome Build:	36.3

Allele
Variation Class:	DIP: deletion/insertion polymorphism
RefSNP Alleles:	-/AAA
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NT_010542.15:g.264767_264768ins3

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss4304435 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3073042 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss4304435	TSC-CSHL\|TSC1418513		fwd/T	-/AAA	gcctcaaaaaaacaacaaaaaaaaaaacaa	cacagaaacccaacagagacctgaagacgt	11/09/01	10/10/03	102	Genomic			unknown
ss83434093	HGSV\|Cor18517_DIV_20070510.chr16_87231651-87231652_1		fwd/	-/AAAAAAA	gcctcaaaaaaacaacaaaaaaaaaaacaa	cacagaaacccaacagagacctgaagacgt	12/04/07	12/05/07	130	Genomic			unknown

Fasta sequence (Legend)

 CCTCACCGAT CAAGGAGGCC AAAGGCAGCT CCCGGCCCCG CTTACATAAA GCTTCCTGTG
 TGTGCTGGTC ACACCTCACA CCTCACGCCT CACGCCTCAT GCCTCATTCA CACCTCACAC
 CTCACTCCTC ACACCTCCAA CTCAGACTTT TTAGCTTGAA CTTTTTTCTC AATAAAACCA
 CAGAAGCCCA ggccgggtgc agtgactcat gcctgtgatc ccagcacttt gcgaggccga
 ggtgggcaga tcacgaggtc aggagatcga gaccatcctg gctaacatgg tgaaaccccg
 tctctactaa aaatacaaaa aaattagcca ggtgtggtgg cgggcgcctg tagtcccagc
 tacccggcag gctgaggcag gagaatggcg tgaacccagg aagctgagct tgtagtgagc
 cgagatcgca ccactgtact ccccgcctgg gcgacagagt cagactccgc ctcaaaaaaa
 caacaaaaaa aaaaaCAA
 N
 CACAGAAACC CAACAGAGAC CTGAAGACGT GCCTGCCTCC CCCATCTCCG GGACCTCTCC
 CACCTGGGTG AAGGGGGCAC GTGAGCCTCA CCTGATCTTG ACCATCTCAG CTAAAACACT
 GAACCACCCT TGGCACCCAC CAGCAGCAGA CGGAGAAGAA CTGTATAGGG TGCAAAAGCG
 CCCCGCCACC ATCAGGTCCA GATGAAAACC TACAAGTTGA ATCAGC

GeneView

GeneView via analysis of contig annotation: IL17C interleukin 17C

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_010542->NM_013278

function

HuRef

NW_001838333->NM_013278

function

Celera

NW_926561->NM_013278

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_010542->NM_013278->NP_037410	264767:264768	forward	5' near gene

HuRef	NW_001838333->NM_013278->NP_037410	264977	forward	5' near gene

Celera	NW_926561->NM_013278->NP_037410	341812:341813	forward	5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs3073042 maps exactly once on NCBI human chromosome 16

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
16	NW_926561.1	341812^341813	73773822^73773823	plus	-	alt_assembly_1	Celera	Celera	view	498..498
16	NW_001838333.1	264977	74398178	plus	A	alt_assembly_8	HuRef	HuRef	view	498
16	NT_010542.15	264767^264768	87231651^87231652	plus	-	ref_assembly	reference	reference	view	498..498

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AC116552.2 NC_000016.8	AC103884.1

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .