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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract 







Repeat sequence:
   SW  perc perc perc  query     position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence  begin  end (left)    repeat   class/family   begin  end (left)

  218  24.1  0.0  0.0  A01p09      708  761  (139) +  A-rich   Low_complexity     4   57    (0)  



Alignments:
 218 24.07 0.00 0.00  A01p09      708   761 (139)    (TAAAA)n#Simple_repeat        4    57 (123)  

  A01p09             708 AATAAAATGAAATGTTNNAAACCAAAATAAAATAAAATTTTAAAAAATAA 757
                                 i    ivv??   vi               vvv v       
  (TAAAA)n#Simple      4 AATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA 53

  A01p09             758 ATTA 761
                          v  
  (TAAAA)n#Simple     54 AATA 57

Transitions / transversions = 0.38 (3 / 8)
Gap_init rate = 0.00 (0 / 54), avg. gap size = 0.00 (0 / 0)  



Masked Sequence:
>A01p09
TTCGGCACGAGGANGACAGGGAAGACAAGACAGAGTAGTACAGATTACTA
CCAATGGCTACCAAGGTTTACATTGTTTATTATTCTACGTATGGACATGT
TGAGAAGCTAGCTAGANAGATAGAAAAAGGGGCTGCTTCTGTGGAGGGAG
TANAAGCAAAACTGTGGCAGGTACCTGAAACATTGCCTGAAGAANTCCTT
GCTAAGTTGGGAGCACCTCCAAAGAGTGATGTTCCAATTATTACTCCCAA
TGAGCTTACTGAGGCTGATGGCTTTTTGTTTGGTTTTCCCACAAGATTTG
GATCTATGGCCGCTCAATTTAAAGCATTTTTTGATGCAACTGGAGGCCTT
TGGCGTACACAGGCACTANCAGGAAAAGGCTGCAGGGTTCTTCTATAGCA
CTAGTTCTCAAGGGAGGCGGCCAANAAACTACCCCGTTGACATCTATTAC
TCAGCTTGTTCACCATGGATTGATCTTTGTCCCCATTGGATACACATTTG
GCGGTGGCATGTTTGAATTGGANAANGTGAAAGGTGGCTCCCCATATGGT
GCANGAACTTATGCTGGANATGGCTCAAGGCANCCTAATTGAATTANAAT
TGGCTCAANCTTTCCATCANGGAAAGTACTTTGCGGGCATTGCNAANAAC
TCAAGGGATCTCNATGATTTTTATCCTCCATATATCTCCCCACCATATTC
TGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTACTCCTATATCTTCCANACAAAAAAAAAAAAAAACCCA
NGGGGGGCCCGTNCCAATNCCCNAAAATTATCTNTACAATCNCTGGCCNC
CTTTTAAACTCNTGACGGGAAAACCNGCNTTCCCANTTANCCCTTCACNN



Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:          1
total length:     900 bp
GC level:       41.85 %
bases masked       54 bp (  6.00 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:               0           0 bp     0.00 %
      ALUs           0           0 bp     0.00 %
      MIRs           0           0 bp     0.00 %

LINEs:               0           0 bp     0.00 %
      LINE1          0           0 bp     0.00 %
      LINE2          0           0 bp     0.00 %

LTR elements:        0           0 bp     0.00 %
      MaLRs          0           0 bp     0.00 %
      Retrov.        0           0 bp     0.00 %
      MER4_group     0           0 bp     0.00 %

DNA elements:        0           0 bp     0.00 %
      MER1_type      0           0 bp     0.00 %
      MER2_type      0           0 bp     0.00 %
      Mariners       0           0 bp     0.00 %

Unclassified:        0           0 bp     0.00 %

Total interspersed repeats:      0 bp     0.00 %


Small RNA:           0           0 bp     0.00 %

Satellites:          0           0 bp     0.00 %
Simple repeats:      0           0 bp     0.00 %
Low complexity:      1          54 bp     6.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version  05/05/99               default
ProcessRepeats version  05/05/99
Repbase version 3.04




Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.


Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.


Query=  A01p09
        (900 letters)

  Translating both strands of query sequence in all 6 reading frames


Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 2 Sequences     : less than 2 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 522 121 |============================================================
   6310 401  66 |=================================
   3980 335  72 |====================================
   2510 263  91 |=============================================
   1580 172  45 |======================
   1000 127  34 |=================
    631  93  27 |=============
    398  66  18 |=========
    251  48   6 |===
    158  42   3 |=
    100  39   6 |===
   63.1  33   6 |===
   39.8  27   3 |=
   25.1  24   2 |=
   15.8  22   0 |
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 22  <<<<<<<<<<<<<<<<<
   10.0  22   1 |:
   6.31  21   1 |:
   3.98  20   0 |
   2.51  20   0 |
   1.58  20   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|5031275|gb|AAD38143.1|AF139496_1(AF139496) unknown... +3   462  9.0e-70   2
gi|7445353|pir||T05751hypothetical protein M4I22.80 -... +3   405  5.6e-64   2
gi|2564066|dbj|BAA22940.1|(D45900) LEDI-3 protein [Li... +3   418  2.1e-56   2
gi|2464905|emb|CAB16805.1|(Z99708) minor allergen [Ar... +3   340  4.4e-52   2
gi|4454993|gb|AAD21025.1|(AF106939) 1,4-benzoquinone ... +3   311  1.3e-42   2
gi|1168402|sp|P42058|ALA7_ALTALMINOR ALLERGEN ALT A 7... +3   273  6.8e-38   2
gi|400705|sp|P30821|P25_SCHPOP25 PROTEIN (BREFELDIN A... +3   271  9.7e-37   2
gi|2507538|sp|P30849|WRBA_ECOLITRP REPRESSOR BINDING ... +3   270  9.7e-37   2
gi|2126096|pir||I59246trp repressor binding protein -... +3   270  4.1e-36   2
gi|6319849ref|NP_009930.1| FMN-binding protein; Ycp4p... +3   280  1.1e-35   2
gi|7649820|dbj|BAA94098.1|(AP000422) trp repressor bi... +3   260  1.1e-35   2
gi|6320235ref|NP_010315.1| Pst2p >gi|2131379|pir||S61... +3   266  2.2e-35   2
gi|1168970|sp|P42059|CLH5_CLAHEMINOR ALLERGEN CLA H 5... +3   249  1.5e-32   2
gi|5354201|gb|AAD42410.1|AF157493_18(AF157493) trp re... +3   222  9.0e-29   2
gi|7473722|pir||G75573probable trp repressor binding ... +3   157  3.0e-17   2
gi|7429904|pir||G69292tryptophan repressor binding pr... +3   179  3.9e-16   2
gi|6319526ref|NP_009608.1| Homolog to YCR004, obr1 (S... +3   150  4.7e-16   2
gi|3493605|gb|AAC33457.1|(AF067083) Trp repressor bin... +3   184  1.9e-13   1
gi|6225339|sp|O67866|FLAV_AQUAEFLAVODOXIN >gi|7445354... +3    80  5.2e-05   3
gi|1723996|sp|P54586|YHCB_BACSUHYPOTHETICAL 19.0 KD P... +3    68  0.73      2
gi|625362|pir||A61338flavodoxin - Clostridium pasteur... +3    64  0.993     1
gi|2731768|gb|AAC53543.1|(AF016099) glycine receptor ... +1    62  0.9998    1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|5031275             |  ___________________                             
gi|7445353             |  ___________________                             
gi|2564066             |  ___________________                             
gi|2464905             |   __________________                             
gi|4454993             |   ___________________                            
gi|1168402             |  ___________________                             
gi|400705              |   __________________                             
gi|2507538             |   __________________                             
gi|2126096             |   __________________                             
gi|6319849             |   ___________________                            
gi|7649820             |   __________________                             
gi|6320235             |   ___________________                            
gi|1168970             |  ___________________                             
gi|5354201             |   __________________                             
gi|7473722             |   __________________                             
gi|7429904             |   __________________                             
gi|6319526             |   __________________                             
gi|3493605             |   __________________                             
gi|6225339             |   _________ _______                              
gi|1723996             |   _____     ________                             
gi|625362              |   ________                                       
                        __________________________________________________
Query sequence:        |        |       |       |        |       |        | 300
                       0       50     100     150      200     250


Locus_ID                Frame 2 Hits
gi|5031275             |                  ___________________             
gi|7445353             |                      _______________             
gi|2564066             |                      _______________             
gi|2464905             |                     ____________                 
gi|4454993             |                      ___________                 
gi|1168402             |                  _______________                 
gi|400705              |                      ___________                 
gi|2507538             |                      ___________                 
gi|2126096             |                      ___________                 
gi|6319849             |                    _____________                 
gi|7649820             |                      ___________                 
gi|6320235             |                      ___________                 
gi|1168970             |                   ______________                 
gi|5354201             |                       __________                 
gi|7473722             |                       _________                  
gi|7429904             |                    _______                       
gi|6319526             |                    _____________                 
gi|6225339             |                      _________                   
                        __________________________________________________
Query sequence:        |        |       |       |        |       |        | 300
                       0       50     100     150      200     250


Locus_ID                Frame 1 Hits
gi|5031275             |                    ___                           
gi|7445353             |             __________                           
gi|2564066             |             __________                           
gi|2464905             |               ________                           
gi|2731768             |             _______                              
Prosite Hits:           __          ____                                  
                        __________________________________________________
Query sequence:        |        |       |       |        |       |        | 300
                       0       50     100     150      200     250
__________________
Prosite hits:
   ATP_GTP_A            ATP/GTP-binding site motif A (P-loop).   2..9
   LEUCINE_ZIPPER       Leucine zipper pattern.                  73..94
__________________




Use the  and  icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).

R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.



to_Entrezto_Relatedto_Related >gi|5031275|gb|AAD38143.1|AF139496_1  (AF139496) unknown [Prunus armeniaca]
            Length = 204

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                           __________________________
Frame  1 hits (HSPs):                             ____                    
                        __________________________________________________
Database sequence:     |            |           |           |           | | 204
                       0           50         100         150         200

  Plus Strand HSPs:

 Score = 462 (162.6 bits), Expect = 9.0e-70, Sum P(2) = 9.0e-70
 Identities = 88/108 (81%), Positives = 96/108 (88%), Frame = +3

Query:    54 MATKVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDV 233
             MATKVYIVYYS YGHVEKLA  I KGAASVEGV AKLWQV ETL ++ L K+GAPPKS+V
Sbjct:     1 MATKVYIVYYSMYGHVEKLAEEILKGAASVEGVEAKLWQVAETLQDDVLGKMGAPPKSEV 60

Query:   234 PIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             PII+PN+L+EADG LFGFPTRFG MAAQFKAFFD+TGGLWRTQAL GK
Sbjct:    61 PIISPNDLSEADGLLFGFPTRFGMMAAQFKAFFDSTGGLWRTQALAGK 108

 Score = 272 (95.7 bits), Expect = 9.0e-70, Sum P(2) = 9.0e-70
 Identities = 55/107 (51%), Positives = 68/107 (63%), Frame = +2

Query:   341 WRPLAYTGTXRKRLQGSSIALVLKGGGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFEL 520
             WR  A  G    +  G   +   +GGGQ TT LT+ITQLVHHG++FVPIGY+FG GMFE+
Sbjct:   100 WRTQALAG----KPAGIFYSTGSQGGGQETTALTAITQLVHHGMVFVPIGYSFGAGMFEM 155

Query:   521 XXVKGGSPYGAXTYAGXGSRXPN*IXIGSXFPSXKVLCGHCXXLKGS 661
               +KGGSPYGA TYAG G+R P+ + +   F   K   G    LKGS
Sbjct:   156 EQIKGGSPYGAGTYAGDGTRQPSELELQQAFHQGKYFAGIAKKLKGS 202

 Score = 51 (18.0 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
 Identities = 10/13 (76%), Positives = 10/13 (76%), Frame = +1

Query:   376 KAAGFFYSTSSQG 414
             K AG FYST SQG
Sbjct:   108 KPAGIFYSTGSQG 120


to_Entrezto_Relatedto_Related >gi|7445353|pir||T05751  hypothetical protein M4I22.80 - Arabidopsis thaliana
            >gi|3269288|emb|CAA19721.1| (AL030978) putative protein
            [Arabidopsis thaliana] >gi|7269580|emb|CAB79582.1| (AL161566)
            putative protein [Arabidopsis thaliana]
            Length = 211

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                                ____________________ 
Frame  1 hits (HSPs):                  _______________                    
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 211
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 405 (142.6 bits), Expect = 5.6e-64, Sum P(2) = 5.6e-64
 Identities = 82/114 (71%), Positives = 91/114 (79%), Frame = +3

Query:    54 MATKVYIVY----YSTYGHVE--KLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGA 215
             MATKVYIVY    +   G ++  KLA+ I KGAASV+GV A LWQVPETL E+ L+K+ A
Sbjct:     1 MATKVYIVYVKIIFCLSGAIDNLKLAQEIRKGAASVDGVEAILWQVPETLQEDVLSKMSA 60

Query:   216 PPKSDVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             PPKSD PIITPNEL EADGF+FGFPTRFG MAAQFKAF DATGGLWRTQ L GK
Sbjct:    61 PPKSDAPIITPNELAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGK 114

 Score = 274 (96.5 bits), Expect = 5.6e-64, Sum P(2) = 5.6e-64
 Identities = 52/83 (62%), Positives = 60/83 (72%), Frame = +2

Query:   410 KGGGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFELXXVKGGSPYGAXTYAGXGSRXPN 589
             +GGGQ TT LT+ITQLVHHG+IFVPIGYTFG GMFE+  VKGGSPYGA T+AG GSR P 
Sbjct:   125 QGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGSRQPT 184

Query:   590 *IXIGSXFPSXKVLCGHCXXLKG 658
              + +G  F   K +      LKG
Sbjct:   185 ELELGQAFHQGKYIAAISKKLKG 207

 Score = 64 (22.5 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
 Identities = 18/59 (30%), Positives = 22/59 (37%), Frame = +1

Query:   238 LLLPMSLLRLMAFCLVFPQDLDLWPLNLKHFLMQLEAFGVHRHXQEKAAGFFYSTSSQG 414
             ++ P  L     F   FP    +     K FL         +    K AG FYST SQG
Sbjct:    68 IITPNELAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQG 126


to_Entrezto_Relatedto_Related >gi|2564066|dbj|BAA22940.1|  (D45900) LEDI-3 protein [Lithospermum
            erythrorhizon]
            Length = 201

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                                _____________________
Frame  1 hits (HSPs):                  _______________                    
                        __________________________________________________
Database sequence:     |            |           |            |           || 201
                       0           50         100          150         200

  Plus Strand HSPs:

 Score = 418 (147.1 bits), Expect = 2.1e-56, Sum P(2) = 2.1e-56
 Identities = 78/108 (72%), Positives = 89/108 (82%), Frame = +3

Query:    54 MATKVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDV 233
             MA K+YIVYYSTYGHV KLA  ++KGA SV+GV  KLWQV ETLPE+ L K+ APPK D 
Sbjct:     1 MAVKLYIVYYSTYGHVLKLAEEMKKGAESVDGVEVKLWQVAETLPEDVLGKMYAPPKGDA 60

Query:   234 PIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             PIITP+EL EADG+LFGFPTRFG M AQFKAFFD+TGGLW++  L GK
Sbjct:    61 PIITPDELAEADGYLFGFPTRFGMMPAQFKAFFDSTGGLWQSGGLVGK 108

 Score = 189 (66.5 bits), Expect = 2.1e-56, Sum P(2) = 2.1e-56
 Identities = 40/82 (48%), Positives = 53/82 (64%), Frame = +2

Query:   410 KGGGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFELXXVKGGSPYGAXTYAG-XGSRXP 586
             +GGGQ TT LT+ITQLVHHG+I+VP G TFG G+ +   ++GG+ YGA T+AG  G+R P
Sbjct:   119 QGGGQETTALTAITQLVHHGMIYVPTGGTFGAGLHK-NEIRGGTLYGAGTFAGPDGARQP 177

Query:   587 N*IXIGSXFPSXKVLCGHCXXLK 655
               + +   F   K   G    LK
Sbjct:   178 TELELELAFHQGKYTAGIVKRLK 200

 Score = 55 (19.4 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 16/59 (27%), Positives = 21/59 (35%), Frame = +1

Query:   238 LLLPMSLLRLMAFCLVFPQDLDLWPLNLKHFLMQLEAFGVHRHXQEKAAGFFYSTSSQG 414
             ++ P  L     +   FP    + P   K F               K AGFF S+ SQG
Sbjct:    62 IITPDELAEADGYLFGFPTRFGMMPAQFKAFFDSTGGLWQSGGLVGKPAGFFISSGSQG 120


to_Entrezto_Relatedto_Related >gi|2464905|emb|CAB16805.1|  (Z99708) minor allergen [Arabidopsis thaliana]
            >gi|7270624|emb|CAB80341.1| (AL161590) minor allergen [Arabidopsis
            thaliana]
            Length = 273

Frame  3 hits (HSPs):                ____________________                 
Frame  2 hits (HSPs):                                    ____________     
Frame  1 hits (HSPs):                             _________               
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 273
                       0       50       100      150      200      250

  Plus Strand HSPs:

 Score = 340 (119.7 bits), Expect = 4.4e-52, Sum P(2) = 4.4e-52
 Identities = 64/106 (60%), Positives = 83/106 (78%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKS-DVPI 239
             K+++V+YS YGHVE LA+ ++KG  SVEGV A L++VPETL +E + ++ AP K  ++P 
Sbjct:    74 KIFVVFYSMYGHVESLAKRMKKGVDSVEGVEATLYRVPETLSQEVVEQMKAPVKDLEIPE 133

Query:   240 ITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             IT  ELT ADGFLFGFPTR+G MAAQ KAFFD+TG LW+ Q+L GK
Sbjct:   134 ITAAELTAADGFLFGFPTRYGCMAAQMKAFFDSTGSLWKEQSLAGK 179

 Score = 226 (79.6 bits), Expect = 4.4e-52, Sum P(2) = 4.4e-52
 Identities = 40/65 (61%), Positives = 51/65 (78%), Frame = +2

Query:   386 GSSIALVLKGGGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFELXXVKGGSPYGAXTYA 565
             G  ++   +GGGQ TT  T+ITQLVHHG++FVPIGYTFG GMF++  ++GGSPYGA  +A
Sbjct:   182 GFFVSTGTQGGGQETTAWTAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA 241

Query:   566 GXGSR 580
             G GSR
Sbjct:   242 GDGSR 246

 Score = 50 (17.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 14/47 (29%), Positives = 18/47 (38%), Frame = +1

Query:   274 FCLVFPQDLDLWPLNLKHFLMQLEAFGVHRHXQEKAAGFFYSTSSQG 414
             F   FP         +K F     +    +    K AGFF ST +QG
Sbjct:   145 FLFGFPTRYGCMAAQMKAFFDSTGSLWKEQSLAGKPAGFFVSTGTQG 191


to_Entrezto_Relatedto_Related >gi|4454993|gb|AAD21025.1|  (AF106939) 1,4-benzoquinone reductase [Phanerochaete
            chrysosporium]
            Length = 201

Frame  3 hits (HSPs):   ____________________________                      
Frame  2 hits (HSPs):                                ________________     
                        __________________________________________________
Database sequence:     |            |           |            |           || 201
                       0           50         100          150         200

  Plus Strand HSPs:

 Score = 311 (109.5 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 60/111 (54%), Positives = 75/111 (67%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDVPII 242
             KV I+ YS YGH+ KLA   EK      G  A ++Q+PETLPEE LAK+ APPK + P+I
Sbjct:     3 KVAIIIYSMYGHIAKLAEA-EKAGIEEAGGSATIYQIPETLPEEVLAKMHAPPKPEYPVI 61

Query:   243 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGKGCRVLL 395
             TP +L E D F+FG PTR+G+   Q+KAF+DATGGLW   AL GK   V +
Sbjct:    62 TPEKLPEFDAFVFGIPTRYGNFPGQWKAFWDATGGLWAQGALAGKYASVFV 112

 Score = 165 (58.1 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 33/61 (54%), Positives = 43/61 (70%), Frame = +2

Query:   413 GGGQXTTPLTSITQLVHHGLIFVPIGY-TFGGGMFELXXVKGGSPYGAXTYAGX-GSRXP 586
             GGGQ +T L SI+ L HHG++FVP+GY T    +  L  V+GGSP+GA T+AG  GSR P
Sbjct:   118 GGGQESTVLNSISTLTHHGIVFVPLGYSTTFAQLANLSEVRGGSPWGAGTFAGADGSRSP 177

Query:   587 N 589
             +
Sbjct:   178 S 178


to_Entrezto_Relatedto_Related >gi|1168402|sp|P42058|ALA7_ALTAL  MINOR ALLERGEN ALT A 7 (ALT A VII)
            >gi|1086045|pir||S43111 minor allergen - Alternaria alternata
            >gi|467619|emb|CAA55069.1| (X78225) minor allergen [Alternaria
            alternata]
            Length = 204

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                           _____________________     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |           |           |           | | 204
                       0           50         100         150         200
__________________

Annotated Domains:
   DOMO                 DM00894:                                 1..27
   DOMO                 DM01333:                                 29..201
   PRODOM               PD006822:                                1..54
   PRODOM               PD003171:                                69..202
__________________


  Plus Strand HSPs:

 Score = 273 (96.1 bits), Expect = 6.8e-38, Sum P(2) = 6.8e-38
 Identities = 59/109 (54%), Positives = 72/109 (66%), Frame = +3

Query:    54 MATKVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPK-SD 230
             MA K+ IVYYS YGH++K+A    KG     G  AKL+QV ETLP+E L K+ APPK S 
Sbjct:     1 MAPKIAIVYYSMYGHIKKMADAELKGIQEAGG-DAKLFQVAETLPQEVLDKMYAPPKDSS 59

Query:   231 VPIIT-PNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             VP++  P  L E DG LFG PTR+G+  AQFK F+D TG  W+  A  GK
Sbjct:    60 VPVLEDPAVLEEFDGILFGIPTRYGNFPAQFKTFWDKTGKQWQQGAFWGK 109

 Score = 158 (55.6 bits), Expect = 6.8e-38, Sum P(2) = 6.8e-38
 Identities = 37/83 (44%), Positives = 50/83 (60%), Frame = +2

Query:   341 WRPLAYTGTXRKRLQGSSIALVLKGGGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMF-E 517
             W+  A+ G    +  G  ++    GGGQ TT +TS++ LV HG I+VP+GY     M   
Sbjct:   101 WQQGAFWG----KYAGVFVSTGTLGGGQETTAITSMSTLVDHGFIYVPLGYKTAFSMLAN 156

Query:   518 LXXVKGGSPYGAXTY-AGXGSRXPN 589
             L  V GGSP+GA T+ AG GSR P+
Sbjct:   157 LDEVHGGSPWGAGTFSAGDGSRQPS 181


to_Entrezto_Relatedto_Related >gi|400705|sp|P30821|P25_SCHPO  P25 PROTEIN (BREFELDIN A RESISTANCE PROTEIN)
            >gi|322896|pir||A45029 brefeldin A resistance protein obr1 -
            fission yeast (Schizosaccharomyces pombe)
            >gi|287631|dbj|BAA02370.1| (D13038) ORF [Schizosaccharomyces pombe]
            >gi|311846|emb|CAA51956.1| (X73558) overexpressed in brefeldin A
            resistance [Schizosaccharomyces pombe] >gi|2462689|emb|CAB16744.1|
            (Z99568) brefeldin a resistance protein [Schizosaccharomyces pombe]
            Length = 202

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                                _______________      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200
__________________

Annotated Domains:
   DOMO                 DM00894:                                 1..29
   DOMO                 DM01333:                                 31..201
   PRODOM               PD006822:                                4..56
   PRODOM               PD003171:                                67..194
__________________


  Plus Strand HSPs:

 Score = 271 (95.4 bits), Expect = 9.7e-37, Sum P(2) = 9.7e-37
 Identities = 56/107 (52%), Positives = 70/107 (65%), Frame = +3

Query:    57 ATKVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDVP 236
             A  V IV YSTYGHV KLA   EK      G  A ++Q PETL  E L K+ A PK + P
Sbjct:     4 ANTVAIVIYSTYGHVVKLAEA-EKAGIEKAGGKAVIYQFPETLSPEILEKMHAAPKPNYP 62

Query:   237 IITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             ++T + LT+ D FLFG+PTR+G+  AQF+ F+D+TGGLW   AL GK
Sbjct:    63 VVTLDVLTQYDAFLFGYPTRYGTPPAQFRTFWDSTGGLWVQGALHGK 109

 Score = 149 (52.5 bits), Expect = 9.7e-37, Sum P(2) = 9.7e-37
 Identities = 32/58 (55%), Positives = 41/58 (70%), Frame = +2

Query:   413 GGGQXTTPLTSITQLVHHGLIFVPIGY--TFGGGMFELXXVKGGSPYGAXTYAGX-GSR 580
             GGGQ +T LT++T  VHHG+IFVP+GY  TF   M  +  + GGS +GA +YAG  GSR
Sbjct:   121 GGGQESTALTAMTSFVHHGMIFVPLGYKNTFSL-MANVESIHGGSSWGAGSYAGADGSR 178


to_Entrezto_Relatedto_Related >gi|2507538|sp|P30849|WRBA_ECOLI  TRP REPRESSOR BINDING PROTEIN
            >gi|7429903|pir||B64842 trp repressor-binding protein - Escherichia
            coli >gi|1787239|gb|AAC74089.1| (AE000202) trp repressor binding
            protein; affects association of trp repressor and operator
            [Escherichia coli] >gi|4062558|dbj|BAA35771.1| (D90737) Trp
            repressor binding protein [Escherichia coli]
            >gi|4062567|dbj|BAA35781.1| (D90738) Trp repressor binding protein
            [Escherichia coli]
            Length = 198

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                                _______________      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |           |            |            | 198
                       0           50         100          150
__________________

Annotated Domains:
   DOMO                 DM00894:                                 1..25
   DOMO                 DM01333:                                 27..194
   PRODOM               PD006822:                                2..51
   PRODOM               PD003171:                                64..196
__________________


  Plus Strand HSPs:

 Score = 270 (95.0 bits), Expect = 9.7e-37, Sum P(2) = 9.7e-37
 Identities = 48/105 (45%), Positives = 69/105 (65%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDVPII 242
             KV ++YYS YGH+E +AR + +GA+ V+G    + +VPET+P +   K G   ++  P+ 
Sbjct:     3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVA 61

Query:   243 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             TP EL + D  +FG PTRFG+M+ Q + F D TGGLW + AL GK
Sbjct:    62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGK 106

 Score = 150 (52.8 bits), Expect = 9.7e-37, Sum P(2) = 9.7e-37
 Identities = 30/59 (50%), Positives = 40/59 (67%), Frame = +2

Query:   413 GGGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFELXXVKGGSPYGAXTYAGX-GSRXPN 589
             GGGQ  T  ++ T L HHG++ VPIGY     +F++  V+GG+PYGA T AG  GSR P+
Sbjct:   117 GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPS 175


to_Entrezto_Relatedto_Related >gi|2126096|pir||I59246  trp repressor binding protein - Escherichia coli
            >gi|148264|gb|AAA24759.1| (M99166) trp repressor binding protein
            [Escherichia coli]
            Length = 198

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                                _______________      
                        __________________________________________________
Database sequence:     |            |           |            |            | 198
                       0           50         100          150

  Plus Strand HSPs:

 Score = 270 (95.0 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
 Identities = 48/105 (45%), Positives = 69/105 (65%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDVPII 242
             KV ++YYS YGH+E +AR + +GA+ V+G    + +VPET+P +   K G   ++  P+ 
Sbjct:     3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVA 61

Query:   243 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             TP EL + D  +FG PTRFG+M+ Q + F D TGGLW + AL GK
Sbjct:    62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGK 106

 Score = 144 (50.7 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
 Identities = 29/59 (49%), Positives = 39/59 (66%), Frame = +2

Query:   413 GGGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFELXXVKGGSPYGAXTYAGX-GSRXPN 589
             GGGQ  T  ++ T L HHG++ VPI Y     +F++  V+GG+PYGA T AG  GSR P+
Sbjct:   117 GGGQEQTITSTWTTLAHHGMVIVPIAYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPS 175


to_Entrezto_Related >gi|6319849  ref|NP_009930.1| FMN-binding protein; Ycp4p
            >gi|140449|sp|P25349|YCP4_YEAST HYPOTHETICAL 26.4 KD PROTEIN IN
            CDC10-CIT2 INTERGENIC REGION >gi|280444|pir||S26733 hypothetical
            protein YCR004c - yeast (Saccharomyces cerevisiae)
            >gi|3300|emb|CAA77443.1| (Z11113) hypothetical protein C247
            [Saccharomyces cerevisiae] >gi|1907147|emb|CAA42341.1| (X59720)
            YCR004c, len:247 [Saccharomyces cerevisiae]
            Length = 247

Frame  3 hits (HSPs):   _______________________                           
Frame  2 hits (HSPs):                       ________________              
                        __________________________________________________
Database sequence:     |         |          |         |         |         | 247
                       0        50        100       150       200

  Plus Strand HSPs:

 Score = 280 (98.6 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 53/111 (47%), Positives = 75/111 (67%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPK-SDVPI 239
             K+ I+ YSTYGH++ LA+ ++KG  +  G  A +++V ETLP+E L K+ AP K  D+P+
Sbjct:     3 KIAIITYSTYGHIDVLAQAVKKGVEAAGG-KADIYRVEETLPDEVLTKMNAPQKPEDIPV 61

Query:   240 ITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGKGCRVLL 395
              T   L E D FLFG PTRFG++ AQ+ AF+D TGGLW   +L GK   + +
Sbjct:    62 ATEKTLLEYDAFLFGVPTRFGNLPAQWSAFWDKTGGLWAKGSLNGKAAGIFV 113

 Score = 130 (45.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 29/75 (38%), Positives = 42/75 (56%), Frame = +2

Query:   362 GTXRKRLQGSSIALVLKGGGQXTTPLTSITQLVHHGLIFVPIGYTFG-GGMFELXXVKGG 538
             G+   +  G  ++    GGGQ +T    ++ L HHG+IF+P+GY      +  +  V GG
Sbjct:   102 GSLNGKAAGIFVSTSSYGGGQESTVKACLSYLAHHGIIFLPLGYKNSFAELASIEEVHGG 161

Query:   539 SPYGAXTYAG-XGSR 580
             SP+GA T AG  GSR
Sbjct:   162 SPWGAGTLAGPDGSR 176


to_Entrezto_Relatedto_Related >gi|7649820|dbj|BAA94098.1|  (AP000422) trp repressor binding protein
            [Escherichia coli O157:H7]
            Length = 198

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                                _______________      
                        __________________________________________________
Database sequence:     |            |           |            |            | 198
                       0           50         100          150

  Plus Strand HSPs:

 Score = 260 (91.5 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 47/105 (44%), Positives = 67/105 (63%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDVPII 242
             KV ++YYS YGH+E +AR + +GA+ V+G    + +VPET+  +   K G   ++  P+ 
Sbjct:     3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMSPQLFEKAGGKTQT-APVA 61

Query:   243 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             TP EL   D  +FG PTRFG+M+ Q + F D TGGLW + AL GK
Sbjct:    62 TPQELANYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGK 106

 Score = 150 (52.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 30/59 (50%), Positives = 40/59 (67%), Frame = +2

Query:   413 GGGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFELXXVKGGSPYGAXTYAGX-GSRXPN 589
             GGGQ  T  ++ T L HHG++ VPIGY     +F++  V+GG+PYGA T AG  GSR P+
Sbjct:   117 GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPS 175


to_Entrezto_Related >gi|6320235  ref|NP_010315.1| Pst2p >gi|2131379|pir||S61585 hypothetical protein
            YDR032c - yeast (Saccharomyces cerevisiae)
            >gi|1122352|emb|CAA92369.1| (Z68196) unknown [Saccharomyces
            cerevisiae] >gi|1431472|emb|CAA98854.1| (Z74328) ORF YDR032c
            [Saccharomyces cerevisiae]
            Length = 198

Frame  3 hits (HSPs):   _____________________________                     
Frame  2 hits (HSPs):                                ________________     
                        __________________________________________________
Database sequence:     |            |           |            |            | 198
                       0           50         100          150

  Plus Strand HSPs:

 Score = 266 (93.6 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
 Identities = 57/110 (51%), Positives = 69/110 (62%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDVPII 242
             +V I+ Y+ YGHV   A   +KG  +  G  A ++QV ETL  E +  LG  PK D PI 
Sbjct:     3 RVAIIIYTLYGHVAATAEAEKKGIEAAGG-SADIYQVEETLSPEVVKALGGAPKPDYPIA 61

Query:   243 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK--GCRV 389
             T + LTE D FLFG PTRFG+  AQ+KAF+D TGGLW   AL GK  GC V
Sbjct:    62 TQDTLTEYDAFLFGIPTRFGNFPAQWKAFWDRTGGLWAKGALHGKVAGCFV 112

 Score = 141 (49.6 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
 Identities = 29/61 (47%), Positives = 38/61 (62%), Frame = +2

Query:   413 GGGQXTTPLTSITQLVHHGLIFVPIGY-TFGGGMFELXXVKGGSPYGAXTYAGX-GSRXP 586
             GGG   T + S++ L HHG+IFVP+GY      +  +  V GGSP+GA T AG  GSR P
Sbjct:   117 GGGNEATIMNSLSTLAHHGIIFVPLGYKNVFAELTNMDEVHGGSPWGAGTIAGSDGSRSP 176

Query:   587 N 589
             +
Sbjct:   177 S 177


to_Entrezto_Relatedto_Related >gi|1168970|sp|P42059|CLH5_CLAHE  MINOR ALLERGEN CLA H 5 (CLA H V)
            >gi|1086046|pir||S43116 minor allergen - fungus (Cladosporium
            herbarum) >gi|467629|emb|CAA55068.1| (X78224) minor allergen
            [Cladosporium herbarum]
            Length = 204

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                            ____________________     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |           |           |           | | 204
                       0           50         100         150         200
__________________

Annotated Domains:
   DOMO                 DM00894:                                 1..27
   DOMO                 DM01333:                                 29..200
   PRODOM               PD006822:                                1..54
   PRODOM               PD003171:                                56..201
__________________


  Plus Strand HSPs:

 Score = 249 (87.7 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
 Identities = 53/109 (48%), Positives = 70/109 (64%), Frame = +3

Query:    54 MATKVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSD- 230
             MA K+ I++YST+GHV+ LA    KG     G    L++VPETL +E L K+ APPK D 
Sbjct:     1 MAPKIAIIFYSTWGHVQTLAEAEAKGIREAGG-SVDLYRVPETLTQEVLTKMHAPPKDDS 59

Query:   231 VPIIT-PNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             +P IT P  L + D F  G PTR+G+  AQ++ F+D TGG W+T A  GK
Sbjct:    60 IPEITDPFILEQYDRFPHGHPTRYGNFPAQWRTFWDRTGGQWQTGAFWGK 109

 Score = 131 (46.1 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
 Identities = 30/79 (37%), Positives = 48/79 (60%), Frame = +2

Query:   359 TGTXRKRLQGSSIALVLKGGGQXTTPLTSITQLVHHGLIFVPIGY-TFGGGMFELXXVKG 535
             TG    +  G  I+   +GGGQ +T L +++ L HHG+I+VP+GY T    + +   V+G
Sbjct:   103 TGAFWGKYAGLFISTGTQGGGQESTALAAMSTLSHHGIIYVPLGYKTTFHLLGDNSEVRG 162

Query:   536 GSPYGAXTYAGX-GSRXPN 589
              + +GA T++G  GSR P+
Sbjct:   163 AAVWGAGTFSGGDGSRQPS 181


to_Entrezto_Relatedto_Related >gi|5354201|gb|AAD42410.1|AF157493_18  (AF157493) trp repressor binding protein
            [Zymomonas mobilis]
            Length = 199

Frame  3 hits (HSPs):   ___________________________                       
Frame  2 hits (HSPs):                                _______________      
                        __________________________________________________
Database sequence:     |            |           |            |            | 199
                       0           50         100          150

  Plus Strand HSPs:

 Score = 222 (78.1 bits), Expect = 9.0e-29, Sum P(2) = 9.0e-29
 Identities = 44/105 (41%), Positives = 61/105 (58%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPKSDVPII 242
             K+ ++YYSTYGHVE +A  + +GA +  G  A + +VPE +PEE   K         PI 
Sbjct:     3 KILVLYYSTYGHVESMAYAVAEGARA--GAEADVKRVPELVPEEAAKKNHFKIDQKAPIA 60

Query:   243 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
              P +  + DG + G PTRFG + +Q   F+D TGG+W   AL GK
Sbjct:    61 EPKDFLDYDGIIVGAPTRFGRLPSQMANFWDRTGGIWAQGALNGK 105

 Score = 122 (42.9 bits), Expect = 9.0e-29, Sum P(2) = 9.0e-29
 Identities = 27/58 (46%), Positives = 36/58 (62%), Frame = +2

Query:   416 GGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFELXXVKGGSPYGAXTYAGX-GSRXPN 589
             GGQ TT  + ++ L+HHGL+   + Y+F G    L  V GG+PYGA T A   GSR P+
Sbjct:   118 GGQETTLYSLMSSLLHHGLVISGLPYSFQG-QGRLDEVTGGAPYGATTIAASDGSRQPS 175


to_Entrezto_Relatedto_Related >gi|7473722|pir||G75573  probable trp repressor binding protein WrbA -
            Deinococcus radiodurans (strain R1)
            >gi|6460712|gb|AAF12417.1|AE001863_42 (AE001863) trp repressor
            binding protein WrbA, putative [Deinococcus radiodurans]
            Length = 200

Frame  3 hits (HSPs):    ____________________________                     
Frame  2 hits (HSPs):                                  ____________       
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150

  Plus Strand HSPs:

 Score = 157 (55.3 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
 Identities = 40/109 (36%), Positives = 57/109 (52%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLAR-XIEKGAASVEGVXAKLWQVPETLPEEXLA-----KLGAPPK 224
             K+ IV+YS+ G    +A+   E G A+  G   +L +V ET P++ +      K      
Sbjct:     6 KLAIVFYSSTGTGYAMAQEAAEAGRAA--GAEVRLLKVRETAPQDVIDGQDAWKANIEAM 63

Query:   225 SDVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
              DVP  TP +L  A+  +F  PTRFG   +Q +AF D  GGLW +  L  K
Sbjct:    64 KDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANK 114

 Score = 78 (27.5 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
 Identities = 20/50 (40%), Positives = 24/50 (48%), Frame = +2

Query:   416 GGQXTTPLTSITQLVHHGLIFVPIGYTFGGGMFELXXVKGGSPYGAXTYA 565
             GGQ TT  T     +H G +  P GYT      E+    GG+PYGA   A
Sbjct:   127 GGQETTLQTLYMTAMHWGAVLTPPGYTD-----EVIFKSGGNPYGASVTA 171


to_Entrezto_Relatedto_Related >gi|7429904|pir||G69292  tryptophan repressor binding protein (wrbA) homolog -
            Archaeoglobus fulgidus >gi|2650293|gb|AAB90893.1| (AE001081)
            tryptophan repressor binding protein (wrbA) [Archaeoglobus
            fulgidus]
            Length = 191

Frame  3 hits (HSPs):   _____________________________                     
Frame  2 hits (HSPs):                              ___________            
                        __________________________________________________
Database sequence:     |            |            |             |          | 191
                       0           50          100           150

  Plus Strand HSPs:

 Score = 179 (63.0 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
 Identities = 40/109 (36%), Positives = 58/109 (53%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXLAKLGAPPK-----S 227
             ++ ++++S  G+  KLA+ +  GA    G    + +VPET+P E L K     K      
Sbjct:     3 RILVIFHSITGNTMKLAKAVADGARE-GGAEVAVKRVPETIPAEILEKNPGYVKVREELE 61

Query:   228 DVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
                +  P EL + D  +FG PTRFG M++Q K F D TG LW  + L GK
Sbjct:    62 SFEVARPEELQDYDAIIFGSPTRFGVMSSQMKQFIDMTGRLWMERRLEGK 111

 Score = 44 (15.5 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
 Identities = 13/40 (32%), Positives = 20/40 (50%), Frame = +2

Query:   374 KRLQGSSIALVLKG----GGQXTTPLTSITQLVHHGLIFV 481
             +RL+G   A+        GG+  T L+ +  L  HG+I V
Sbjct:   106 RRLEGKVGAVFTSNEMPHGGKEATLLSMLLPLFAHGMIIV 145


to_Entrezto_Related >gi|6319526  ref|NP_009608.1| Homolog to YCR004, obr1 (S. pombe), trp repressor
            binding protein (E. coli); Ybr052cp >gi|586495|sp|P38234|YBQ2_YEAST
            HYPOTHETICAL 22.9 KD PROTEIN IN REG2-YRO2 INTERGENIC REGION
            >gi|626561|pir||S45910 hypothetical protein YCR004c homolog YBR052c
            - yeast (Saccharomyces cerevisiae) >gi|536285|emb|CAA84995.1|
            (Z35921) ORF YBR052c [Saccharomyces cerevisiae]
            >gi|559948|emb|CAA86395.1| (Z46260) putative protein [Saccharomyces
            cerevisiae]
            Length = 210

Frame  3 hits (HSPs):   ____________________________                      
Frame  2 hits (HSPs):                             ___________________     
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 210
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 150 (52.8 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
 Identities = 45/114 (39%), Positives = 64/114 (56%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVP------ETLPEEX--LAKLGAP 218
             KV I+ YS    +  LA   +KG   + G  A+++QVP      E   EE    AK+ A 
Sbjct:     3 KVAILIYSVDDIIATLAENEKKGI-EIAGGEAEIFQVPDVSYKTEYATEEGKEAAKV-AK 60

Query:   219 PKSDVP--IITPNELTEADGFLFGFPTRFGSMAAQFKAFFDA-TGGLWRTQALXGK 377
               +D    I+T   L E D +LFG PT+FG+  A++K+F+D+ TGGLW   +L GK
Sbjct:    61 TNADFSYKILTRETLVEYDYYLFGIPTKFGNFPAEWKSFWDSNTGGLWAKGSLHGK 116

 Score = 90 (31.7 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
 Identities = 22/79 (27%), Positives = 41/79 (51%), Frame = +2

Query:   362 GTXRKRLQGSSIALVLKGGGQXTTPL-TSITQLVHHGLIFVPIGYTFG-GGMFELXXVKG 535
             G+   ++ G  ++  + G G     +  +++ LVHHG+I+VP+GY      + ++  V G
Sbjct:   111 GSLHGKIAGLFVSGAISGKGDTEMCIMNAMSTLVHHGVIYVPLGYKNAYKELTDVEDVNG 170

Query:   536 GSPYGAXTYAGX-GSRXPN 589
                +GA   +G  G R P+
Sbjct:   171 SCAWGAGCVSGIDGGRPPS 189


to_Entrezto_Relatedto_Related >gi|3493605|gb|AAC33457.1|  (AF067083) Trp repressor binding protein
            [Vitreoscilla sp.]
            Length = 124

Frame  3 hits (HSPs):   ___________________________________________       
                        __________________________________________________
Database sequence:     |                   |                   |          | 124
                       0                  50                 100

  Plus Strand HSPs:

 Score = 184 (64.8 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 45/105 (42%), Positives = 58/105 (55%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPE--TLPEEXLAKLGAPPKSDVP 236
             K+ ++YYS  G V  LAR + KG  SVEG  A L  VP+  T+ E   A +   P S  P
Sbjct:     3 KILVLYYSQNGSVLNLAREMAKGIESVEGCEAVLRTVPKISTVCETVQADI---PSSGAP 59

Query:   237 IITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
               T ++L E      G PTRFG+MAA  K F D + G+W +  L GK
Sbjct:    60 YATMDDLRECAALALGSPTRFGNMAAAMKYFLDGSSGVWLSGDLIGK 106


to_Entrezto_Relatedto_Related >gi|6225339|sp|O67866|FLAV_AQUAE  FLAVODOXIN >gi|7445354|pir||F70479 flavodoxin
            - Aquifex aeolicus >gi|2984302|gb|AAC07825.1| (AE000772) flavodoxin
            [Aquifex aeolicus]
            Length = 185

Frame  3 hits (HSPs):   ______________________                            
Frame  2 hits (HSPs):                             _____________           
                        __________________________________________________
Database sequence:     |             |            |             |         | 185
                       0            50          100           150

  Plus Strand HSPs:

 Score = 80 (28.2 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
 Identities = 16/46 (34%), Positives = 27/46 (58%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEEXL 200
             KV ++Y +  G+ +K+A  + +GA S+EG   +L  V E   E+ L
Sbjct:     3 KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL 48

 Score = 69 (24.3 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
 Identities = 15/38 (39%), Positives = 20/38 (52%), Frame = +3

Query:   243 TPNELTEADGFLFGFPTRFGSMAAQFKAFFD-ATGGLW 353
             T  ++  ADG   G PT  G ++ + K FFD   G LW
Sbjct:    43 TKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLW 80

 Score = 43 (15.1 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
 Identities = 15/45 (33%), Positives = 22/45 (48%), Frame = +2

Query:   413 GGGQXTTPLTSITQLVHHGLIFVPIGYT-FGGGMFELX--XVKGGSP 544
             GGG     ++ +T L++ G  F+  G T + G  F L    V  G P
Sbjct:    98 GGGNEVACMSILTMLMNFG--FLVFGVTDYVGKKFTLHYGAVVAGEP 142


to_Entrezto_Relatedto_Related >gi|1723996|sp|P54586|YHCB_BACSU  HYPOTHETICAL 19.0 KD PROTEIN IN GLPD-CSPB
            INTERGENIC REGION >gi|7429905|pir||F69821 flavodoxin homolog yhcB -
            Bacillus subtilis >gi|1239977|emb|CAA65685.1| (X96983) hypothetical
            protein [Bacillus subtilis] >gi|2633225|emb|CAB12730.1| (Z99108)
            similar to flavodoxin [Bacillus subtilis]
            Length = 176

Frame  3 hits (HSPs):   _______     _____________                         
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |              |             |       | 176
                       0            50            100           150
__________________

Annotated Domains:
   DOMO                 DM01333:                                 1..171
   PRODOM               PD099350: YHCB_BACSU                     1..41
   PRODOM               PD003171:                                43..167
__________________


  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 1.3, Sum P(2) = 0.73
 Identities = 13/42 (30%), Positives = 22/42 (52%), Frame = +3

Query:   252 ELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALXGK 377
             +L + D  ++G P  FG++++  K + D  G LW    L  K
Sbjct:    45 KLKDMDAIIWGCPGHFGTISSGLKTWIDRLGYLWAEGELINK 86

 Score = 53 (18.7 bits), Expect = 1.3, Sum P(2) = 0.73
 Identities = 11/24 (45%), Positives = 15/24 (62%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGA 134
             K+Y+VY S   H + LA  I +GA
Sbjct:     2 KIYVVYDSEGEHTKVLAEAIAEGA 25


to_Entrezto_Relatedto_Related >gi|625362|pir||A61338  flavodoxin - Clostridium pasteurianum (fragment)
            Length = 51

Frame  3 hits (HSPs):   ___________________________________________       
Annotated Domains:         _________________                              
                        __________________________________________________
Database sequence:     |                  |                   |           | 51
                       0                 20                  40
__________________

Annotated Domains:
   PROSITE              FLAVODOXIN: Flavodoxin signature.        5..21
__________________


  Plus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 4.9, P = 0.99
 Identities = 15/44 (34%), Positives = 25/44 (56%), Frame = +3

Query:    63 KVYIVYYSTYGHVEKLARXIEKGAASVEGVXAKLWQVPETLPEE 194
             KV I+Y+S  G+ E +A+ I +GA   +G   KL  V +   ++
Sbjct:     2 KVNIIYWSGTGNTEAMAKLIAEGAQE-KGAEVKLLNVSDAKEDD 44


to_Entrezto_Relatedto_Related >gi|2731768|gb|AAC53543.1|  (AF016099) glycine receptor beta-subunit [Mus
            musculus]
            Length = 81

Frame  1 hits (HSPs):   _______________________                           
                        __________________________________________________
Database sequence:     |           |            |           |           | | 81
                       0          20           40          60          80

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 8.3, P = 1.0
 Identities = 17/39 (43%), Positives = 25/39 (64%), Frame = +1

Query:   238 LLLPMSLLRLMAFCLVFPQDLDLWPLNLKHFLMQLEAFG 354
             +L+ MS  RL +  L  P DL L+P++ +   MQLE+FG
Sbjct:     2 VLVSMSF-RL-SITLSCPLDLTLFPMDTQRCKMQLESFG 38


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.95

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.336   0.148   0.474  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.350   0.159   0.583  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.335   0.147   0.541  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.346   0.155   0.577  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.352   0.156   0.592  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.344   0.148   0.503  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      299       253       10.  77 3  12 22  0.12    35
                                                    32  0.11    39
   +2      0      299       252       10.  77 3  12 22  0.12    35
                                                    32  0.11    39
   +1      0      300       256       10.  77 3  12 22  0.12    35
                                                    32  0.11    39
   -1      0      300       252       10.  77 3  12 22  0.12    35
                                                    32  0.11    39
   -2      0      299       255       10.  77 3  12 22  0.12    35
                                                    32  0.11    39
   -3      0      299       255       10.  77 3  12 22  0.12    35
                                                    32  0.11    39


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  22
  No. of states in DFA:  598 (59 KB)
  Total size of DFA:  276 KB (320 KB)
  Time to generate neighborhood:  0.03u 0.00s 0.03t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  348.32u 1.05s 349.37t  Elapsed: 00:03:53
  Total cpu time:  348.39u 1.10s 349.49t  Elapsed: 00:03:53
  Start:  Tue Oct 17 01:44:03 2000   End:  Tue Oct 17 01:47:56 2000



Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000