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Sample GSM3131 Query DataSets for GSM3131
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-4, tumor tissue, 1st repetition [2]
Sample type RNA
 
Source Name Gastrointestinal Stroma Tumor
Organism(s) Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-4
sex=f
age=77
birthyear=1923
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=5
CD34_expression=(not available)
SMA_expression=(not available)
S100_expression=(not available)
mitoses_in_10_hpf=2
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624132 reuse=2 date=20-Sep-2000
 
Submission date Dec 11, 2002
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL10
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 536193 442225 93968
2 373163 442225 -69062
3 447494 442225 5269
4 343505 442225 -98720
5 290975 442225 -151250
6 86618 442225 -355607
7 504959 442225 62734
8 515594 442225 73369
9 394417 442225 -47808
10 293581 442225 -148644
11 516871 442225 74646
12 466225 442225 24000
13 626276 442225 184051
14 790234 442225 348009
15 547231 442225 105006
16 326894 442225 -115331
17 4051690 485809 3565881
18 662322 485809 176513
19 733027 485809 247218
20 669547 485809 183738

Total number of rows: 36865

Table truncated, full table size 985 Kbytes.




Supplementary data files not provided

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