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BUILD 129
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SNP linked to Gene SENP2(geneID:59343) Via Contig Annotation
rs# on all gene models to Batch Query
all rs# to file.

  Gene Model (mRNA alignment) information from genome sequence back to top
Total gene model (contig mRNA transcript): 2
mrnatranscriptproteinmrna orientationContigContig LabelList SNP
NM_021627.2plus strandNP_067640.2forwardNT_005612.15reference<- currently shown
NM_021627.2minus strandNP_067640.2reverseNW_001838884.2HuRefView snp on GeneModel

Include clinically associated in gene region cSNP has frequency double hit

gene model
(contig mRNA transcript):
Contig LabelContigmrnaproteinmrna orientationtranscriptsnp count
referenceNT_005612.15NM_021627.2NP_067640.2forwardplus strand4, coding

Color Legend

Region Contig
position
mRNA
pos
dbSNP rs#
cluster id
Hetero-
zygosity
Validation 3D Clinically
Associated
Function dbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
PubMed
exon_191799352172start codon1
exon_391811470449 rs35589727 0.027 missenseTVal [V]293
contig referenceCAla [A]293
91811481460 rs28420311 N.D. missenseCGln [Q]197
contig referenceGGlu [E]197
exon_791822213818 rs34621498 N.D. missenseCSer [S]2216
contig referenceATyr [Y]2216
exon_10918263151073 rs6762208 0.480byClusterbyFreqwith2hitwithHapMapFreq missenseALys [K]2301
contig referenceCThr [T]2301

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Revised: May 25, 2006 1:38 PM .