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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs37457668          
refSNP ID: rs37457668
Organism:mouse (Mus musculus)
Molecule Type:Genomic
Created/Updated in build:126/128
Map to Genome Build:37.1
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/C
Strain:not submitted
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss50601694 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs37457668 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss50601694PERLEGEN|NES13643671fwd/TA/Ctggctccagcagcatcaagaacaaggagcaccatgggaaccagtagactaagcctccaca02/10/0602/10/06126Genomic100 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs37457668|allelePos=101|totalLen=201|taxid=10090|snpclass=1|alleles='A/C'|mol=Genomic|build=126
 CAAAGTGCTT GAGACTAAGG TATACCACCA CATCCAGCCA CTGCCTTGGT TTCTCTTGTG
 CATGACTAAG TGGCTCCAGC AGCATCAA
 GAACAAGGAG CA
 M
 CCATGGGAAC CA
 GTAGACTAAG CCTCCACATA ACTGAGGTGA GATGACATCC TATCATCCTA ATTAAGTTCG
 GTCATTAACC TTCATCCTCA GTGGCAAT

  GeneView back to top
GeneView via analysis of contig annotation: 2810441K11Rik RIKEN cDNA 2810441K11 gene
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
CeleraNW_001030643->NM_026798
function
C57BL/6JNT_039687->NM_026798
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
CeleraNW_001030643->NM_026798->NP_081074906535reverse3' near gene
C57BL/6JNT_039687->NM_026798->NP_0810743735613reverse3' near gene

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs37457668 maps exactly once on NCBI mouse chromosome 19
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
19NT_039687.7373561310623718plusAref_strainC57BL/6JC57BL/6Jview100
19NW_001030643.190653511245117plusAalt_assembly_1CeleraCeleraview100

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000085.2
dbSNP Blast Analysis
GenBank HTGS Finished:
AC125093.4

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
C/C
ss50601694MM_PANEL2 30IG 13 2

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
-1.000+/-0151500

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .