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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs7649661          
refSNP ID: rs7649661
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Ancestral Allele:T
Clinical Association:unknown
HGVS Names
NM_002093.2:c.283-3942T>A
NT_005612.15:g.26165286A>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss11603765 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7649661 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss11603765WI_SSAHASNP|chr3.NT_005612.13_26069294fwd/TA/Tataggatcatcaaaaaatgctgaaagtggcgggtgcagtggctcacgcctgtaatcccac07/03/0310/10/03116Genomicunknown
ss14230516BCM_SSAHASNP|chr3.NT_005612.14_26165286fwd/TA/Tataggatcatcaaaaaatgctgaaagtggcgggtgcagtggctcacgcctgtaatcccac11/05/0311/22/03119Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7649661|allelePos=204|totalLen=2631|taxid=9606|snpclass=1|alleles='A/T'|mol=Genomic|build=119
 GATACTGGAA ATGAGAGAGG CACAGAGGGC CTAAATTAGC TCCCCACACA TAACTGTCTG
 ACAGGCAGTG CACATATGGG GGTGGAGGGA GGCTCAACAG AGCCCCGGAG AAAGTAAAAG
 CCAAGGCTAA TGTGAAAAAT GTCAGAATTT TGAATATACT TCCCAACTCA CATATAGGAT
 CATCAAAAAA TGCTGAAAGT ggc
 W
 gggtgcagtg gctcacgcct gtaatcccac cactttggga ggttcaggcg ggcagatcac
 ctgaggacag gagttcaaga ccagcctgac cagcatggtg aaacccagtc tctactaaaa
 atataaaatt agccgggctt ggtggcgcat gcctgtaatc ccagatactc gggaggctga
 agcaggagaa ctgcttgaac ccaggaggtg gagcctgcag taagctgaga tcatgccagt
 gcactccagc ctagaaaaca agccagaatc tgtctcaaaa aaaTtcagaa cctagcattg
 ctacaatata ttatataata tgttcaattg gaaaaaaaca ttgtgagaca tgcaaactac
 aggaaaagtt gacctataat caggttaaaa aaaagcagtc aacagaaatt aactcctggt
 gggcaaagct gttggattta gcagataaag aatacaaagc agctattata atttataatt
 aagttcaaaa aattaaggga aaccatattt taaaaattaa agaaaaatga caattgcaca
 acacagagaa tctcaataaa gaaatgctaa cttttaaaac atgagaatta actagagttg
 aaacacatta taacaaaaat gagattcact atgtcctcaa gaaaatattt gagatggcat
 taaaaaaaaa aacccagtga acttgaagaa atagagattg tccaaaagaa agaacaaaga
 gggaaaaaat actgcagaaa aataaacaga gcctcagata cttctgggat aacatcacac
 atatcaacat atgtgtaaaa gcagaactgg aaaaagagaa aggagaaaaa aatgttagaa
 gaaataatgg ctgaacattc cccaaatttg ctgaaaacca ctaatctatc aaaccatgaa
 gatcaatgaa ccggccaggc acggtggctc acgtctataa tcccagcact ttgggaggcc
 gaggcgggtg gattacctga ggtcaggagt tcaagaccag cctggccaac atggtgaaac
 cccatctcta ctaaaaatac aaaaattagc cgggtgtggt ggcacacccc tgtaatccca
 gcgactcggg aggcggaggc aggagaattg cttgagcccg ggaggcagag gttgcagtga
 gtcgagatcg tgccactgca ctccagcctg gctgacagag agagactctg tctcaaaaaa
 aaaaaaaaaa gaaaagaaag aaaagaaaaa aaaattatca atgaacccaa aatatgataa
 acacagggat caacatctaa gcatttcaca tttaaacagt ttgaagccac caaaaaaaaa
 aacatgagag gagcaacaga gaaatcactc atcacataca tgggaaaaac aatacaatta
 atagccgact aatcatcagg aaaaaacgga agctagaagg cagtaacaaa aaattaaaaa
 aaactatcaa ctaagaattc tatttactgc aaaagtattc ttcaagcaag aaaggaagaa
 taaagacatc ctcacactta aaaaaaaaga tggagaataa gttgaaatac ttgaacaagt
 accttgagct aaaagaaaat gacaccacat gttaactgga attcacaaaa acaagtgagg
 accaccagat atattaaata taaatgagaa aatataaaag ACTATAGATA TATTTTTATT
 TCCTCTTAAT TTCATTAAaa gacagaatat gataacagtt gggtttataa cgtaaataaa
 tgtaatatat aaggcaataa cagcaaaaag gagggggaga aaacagttat aatggagcac
 aagtgctata ttttacagaa attaggtcag tattaaccta aagttaatgg tgataaattg
 gaatgtaaac tgtaattctt agagcaacca ctaagaaaat aatttaatgt taaaaatcaa
 cagcagactt aagacgatac actaaaaaat atttgttcaa cacagaagat agtaacgaag
 aacggaagaa caaatataac atgagagata tagaaaacaa agagcaaaat ggcacatgta
 attccagcta catcacacac tacataaaat gtgaaagagc taagcataca atcaaaaggc
 tatataaaaa gaaagctgca actataatct atccctagga attaatactt tagattcaaa
 gacacaaaca acttaaaagt aaaaggatga aaaatgatat acaatacaaa cagtaaccaa
 gagAGATGGA GCGGCACATG TTGGCAGAGA CAGACAGAGA GAGAGACCCA CTGCCTACAA
 GATAAAGTCT AAATCACTTT ATAATCTGGC CTCTCCTTTT CAGTTTAGTC TTCCACTCAT
 GACCAATGTG AATTCTATAT TATCGCTAGA TGCTACTTCT CACTCTTCCT GAATATATTG
 TTTCATTCCC AATTCTAAAC CAATTAT

  GeneView back to top
GeneView via analysis of contig annotation: GSK3B glycogen synthase kinase 3 beta
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_005612->NM_002093
svfunction
HuRefNW_001838881->NM_002093
svfunction
CeleraNW_921807->NM_002093
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_005612->NM_002093->NP_00208426165286reverseintron
HuRefNW_001838881->NM_002093->NP_002084624212forwardintron
CeleraNW_921807->NM_002093->NP_00208426265560reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs7649661 maps exactly once on NCBI human chromosome 3
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
3NW_001838881.2624212117045862minusTalt_assembly_8HuRefHuRefview203
3NW_921807.126265560118079890plusAalt_assembly_1CeleraCeleraview203
3NT_005612.1526165286121152830plusAref_assemblyreferencereferenceview203

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_005612
dbSNP Blast Analysis
GenBank HTGS Finished:
AC078856.13 AC092910.9 NC_000003.10

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .