Journal Article

In press

Jorda, M. J., J. A. Barth, M. E. Clarke, W. W. Wakefield. In press. Groundfish Species Associations with Distinct Oceanographic Habitats off the Pacific Northwest Coast. Fisheries Oceanography.

2008

Amend, M.R., Yoklavich, M.M., Rzhanov, Y., Grimes, C.B., and Wakefield, W.W., 2007, Mosaics of benthic habitats using laser line scan technology: its in the details, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 61-69.

Copps, S.L., Yoklavich, M.M., Parkes, G.B., Wakefield, W.W., Bailey, A., Greene, H.G., Goldfinger, C., and Burn, R.W., 2007, Applying marine habitat data to fishery management on the U.S. west coast: Initiating a policy-science feedback loop, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 451-462.

Romsos, C., C. Goldfinger, R. Robison, R.L. Milstein, and W.W. Wakefield. 2007. Development of a regional seafloor surficial geologic habitat map for the continental margins of Oregon and Washington, USA. In B.J. Todd and H.G. Greene, eds., Mapping the Seafloor for Habitat Characterization. Geological Association of Canada, Special Paper 47, p. 219-243.

Stoner, A.W., C.H. Ryer, S.J. Parker, P.J. Auster, W.W. Wakefield. 2008. Evaluating the role of fish behavior in surveys conducted with underwater vehicles. Canadian Journal of Fisheries and Aquatic Sciences 65:1230-1243.

2007

Whitmire, C.E., Embley, R.W., Wakefield, W.W., Merle, S.G., and Tissot, B.N., 2007, A quantitative approach for using multibeam sonar data to map benthic habitats, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 111-126

2006

Schirripa, M. J., J. J. Colbert. 2006. Interannual Changes in sablefish (Anoplopoma fimbria) recruitment in relation to oceanographic conditions within the California Current System. Fisheries Oceanography, 15:25-36.

2004

Bosley, K. L., J. W. Lavelle, R. D. Brodeur, W. W. Wakefield, R. L. Emmett, E. T. Baker, K. M. Rehmke. 2004. Biological and Physical Processes in and around Astoria Submarine Canyon, Oregon, U.S.A. Journal of Marine Systems, 50:21-37.

Gertsev, V. I., V. V. Gertseva. 2004. Classification of mathematical models in ecology. Ecological Modelling, 178:329-334.

Gertseva, V. V., J. E. Schindler, V. I. Gertsev, N. Y. Ponomarev, W. R. English. 2004. A simulation model of the dynamics of aquatic macroinvertebrate communities. Ecological Modelling, 176:173-186.

Lauth, R. R., W. W. Wakefield, K. Smith. 2004. Estimating the density of thornyheads, Sebastolobus spp., using a towed video camera sled. Fisheries Research, 70:39-48.

Lauth, R. R., J. N. Ianelli, W. W. Wakefield. 2004. Estimating the size selectivity and catching efficiency of a survey bottom trawl for thornyheads, Sebastolobus spp., using a towed video camera sled. Fisheries Research, (70)27-37.

Witting, D. A., R. C. Chambers, K. L. Bosley, S. C. Wainright. 2004. Experimental evaluation of ontogenetic diet transitions in summer flounder (Paralichthys dentatus) using stable isotopes as dietary tracers. Canadian Journal of Fisheries and Aquatic Sciences, (61)2069-2084.

2003

Gertseva, V. V., V. I. Gertsev, N. Y. Ponomarev. 2003. Tropho-ethological polymorphism of fish as a strategy of habitat development: a simulation model. Ecological Modelling, 167:159-164.

Yoklavich, M. M., C. B. Grimes, W. W. Wakefield. 2003. Using laser line scan imaging technology to assess deepwater habitats in the Monterey Bay National Marine Sanctuary. Marine Technology Society Journal, 37(1):18-26.

2002

Bosley, K. L., D. A. Witting, R. C. Chambers, S. C. Wainright. 2002. Estimating turnover rates of carbon and nitrogen in recently metamorphosed winter flounder Pseudopleuronectes americanus with stable isotopes. Marine Ecology Progress Series, 236:233-240.

Hannah, R. W., S. J. Parker, E. L. Fruh. 2002. Length and age at maturity of female petrale sole (Eopsetta jordani) determined from samples collected prior to spawning aggregation. Fishery Bulletin, 100:711-719.

Schirripa, M. J. 2002. An evaluation of back-calculation methodology using simulated otolith data. Fishery Bulletin, 100:789-799.

Weinberg, J. R., P. J. Rago, W. W. Wakefield, C. Keith. 2002. Estimation of tow distance and spatial heterogeneity using data from inclinometer sensors: an example using a clam survey dredge. Fisheries Research, 55(1-3):49-61.

2001

Aas, E., J. Beyer, G. Jonsson, W. L. Reichert, O. K. Andersen. 2001. Evidence of uptake, biotransformation and DNA binding of polyaromatic hydrocarbons in Atlantic cod and sea partridge caught in the vicinity of an aluminum works. Marine Environmental Research, 52:213-229.

Jacobson, L. D., J. K. Brodziak, J. B. Rogers. 2001. Depth distributions and time-varying bottom trawl selectivities for Dover sole (Microstomus pacificus), sablefish (Anoplopoma fimbria), and thoryheads (Sebastolobus alascanus and S. altivelis) in a commercial fishery. Fishery Bulletin, 99(2):309-32.

2000

Weinstein, M. P., S. Y. Litvin, K. L. Bosley, C. M. Fuller, S. C. Wainright. 2000. The role of tidal salt marsh as an energy source for marine transient and resident finfishes: A stable isotope approach. Transactions of the American Fisheries Society, 129:797-810.

1999

Bosley, K. L., S. C. Wainright. 1999. The effects of preservatives and acidification on the stable isotope ratios (15N:14N, 13C:12C) of two species of marine animals. Canadian Journal of Fisheries and Aquatic Sciences, 56:2181-2185.

1992

Rogers, J. B., E. K. Pikitch. 1992. Numerical definition of groundfish assemblages caught off the coasts of Oregon and Washington using commercial fishing strategies. Canadian Journal of Fisheries and Aquatic Sciences, 49(12):2648-2656.

1991

Rogers, J. B., C. C. Burley. 1991. A sigmoid model to predict gastric evacuation rates of smallmouth bass (Micropterus dolomieui) fed juvenile salmon. Canadian Journal of Fisheries and Aquatic Sciences, 46(5):933-937.

1988

Beyer, J., G. Lucchetti, G. Gray. 1988. Digestive tract evacuation in northern squawfish (Ptychocheilus oregonensis). Canadian Journal of Fisheries and Aquatic Sciences, 45(1):548-553.

Book

2008

Tissot, B.N., W.W. Wakefield, M.A. Hixon, and J.E.R. Clemons. In press. Twenty years of fish-habitat studies on Heceta Bank, Oregon. In J.R. Reynolds and H.G. Greene (eds), Marine Habitat Mapping Technology for Alaska, Alaska Sea Grant College Program, University of Alaska Fairbanks, doi:10.4027/mhmta.2008.15, 203-217.

2005

Ariese, F., J. M. Beyer, G. Jonsson, C. Porte-Visa, M. M. Krahn. 2005. Review of analytical methods for determining metabolites of polycyclic aromatic compounds (PACs) in fish bile. ICES Techniques in Marine Environmental Sciences. 39 International Council for the Exploration of the Sea, Copenhagen, Denmark, ii, 41 p.

Section

2005

Wakefield, W. W., C. Whitmire, J. E. Clemons, B. N. Tissot. 2005. Fish habitat studies: Combining high-resolution geological and biological data. Pages 119-138 in Barnes, P. W., J. P. Thomas. (Eds.) Benthic habitats and the effects of fishing. American Fisheries Society, Symposium 41,, Bethesda, Maryland.

2002

Schirripa, M. J. 2002. Status of the sablefish resource off the U. S. Pacific coast in 2002. In Pacific Fishery Management Council 2002. Appendix: Status of the Pacific coast groundfish fishery through 2002 and recommended acceptable biological catches for 2003: Stock assessment and fishery evaluation. Pacific Fishery Management Council, Portland, Oregon.

2001

Schirripa, M. J., R. D. Methot. 2001. Status of the sablefish resource off the U. S. Pacific coast in 2001. In Pacific Fishery Management Council 2001. Appendix: Status of the Pacific coast groundfish fishery through 2001 and recommended acceptable biological catches for 2002: Stock assessment and fishery evaluation. Pacific Fishery Management Council, Portland, Oregon.

2000

Rogers, J. B., R. D. Methot, T. L. Builder, K. Piner, M. Wilkins. 2000. Status of the Darkblotched Rockfish (Sebastes crameri) Resource in 2000. In Status of the Pacific Coast Groundfish Fishery Through 1999 and Recommended Biological Catches for 2001: Stock Assessment and Fishery Evaluation. Pacific Fishery Management Council 2130 SW Fifth Avenue, Suite 224, Portland, Oregon 97201.

Rogers, J. B., R. D. Methot, T. L. Builder, M. Wilkins. 2000. Status of the Pacific Coast groundfish fishery through 1999 and recommended biological catches for 2001: Stock assessment and fishery evaluation. In Pacific Fishery Management Council 2130 SW Fifth Avenue, Suite 224, Portland, OR 97201.

1999

Rogers, J. B., T. L. Builder. 1999. Pacific Coast Groundfish Fisheries. Pages Unit 15, p. 175-181 in Our Living Oceans: Report on the status of U. S. living marine resources. U.S. Dept. Commer., NOAA Tech. Memo. NMFS-F/SPO-41, 301 p.

1998

Rogers, J. B., T. L. Builder, P. R. Crone, J. K. Brodziak, R. D. Methot, R. J. Conser. 1998. Status of the shortspine thornyhead (Sebastolobus alascanus) resource in 1998. In Pacific Fishery Management Council. Appendix: Status of the Pacific coast groundfish fishery through 1998 and Recommended Acceptable Biological Catches for 1999. PFMC, 2130 SW Fifth Avenue, Suite 224, Portland, Oregon 97201.

1997

Rogers, J. B., L. D. Jacobson, R. R. Lauth, J. N. Ianelli, M. Wilkins. 1997. Status of the thornyhead (Sebastolobus sp. ) resource in 1997. In Pacific Fishery Management Council. Appendix: Status of the Pacific coast groundfish fishery through 1997 and Recommended Acceptable Biological Catches for 1998. PFMC, 2130 SW Fifth Avenue, Suite 224, Portland, Oregon 97201.

1996

Rogers, J. B., M. Wilkins, D. J. Kamikawa, F. Wallace, T. L. Builder, M. Zimmerman, M. Kander, B. Culver. 1996. Status of the remaining rockfish in the Sebastes complex in 1996 and recommendations for management in 1997. In Appendix E In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1996 and Recommended Acceptable Biological Catches for 1997. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.

1995

Rogers, J. B. 1995. Sebastes complex assessment methodology. In Appendix D In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1995 and Recommended Acceptable Biological Catches for 1996. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.

1994

Rogers, J. B. 1994. Preliminary status of the splitnose rockfish stock in 1994. In Appendix H In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1994 and Recommended Acceptable Biological Catches for 1995. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.

1993

Rogers, J. B., J. R. Bence. 1993. Status of the chilipepper rockfish stock in 1993. In Appendix D In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1993 and Recommended Acceptable Biological Catches for 1994. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.

Rogers, J. B., W. H. Lenarz. 1993. Status of the widow rockfish stock in 1993. In Appendix B In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1993 and Recommended Acceptable Biological Catches for 1994. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.

1992

Bence, J. R., J. B. Rogers. 1992. Status of the bocaccio in the Conception/Monterey/Eureka areas with recommendations for management in 1993. In Appendix B In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1992 and Recommended Acceptable Biological Catches for 1993. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.

Rogers, J. B., J. R. Bence. 1992. Review of fishery and auxillary data for chilipepper rockfish in the Eureka/Conception/Monterey INPFC areas: a qualitative assessment of the status of the stock in 1992. In Appendix F In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1992 and Recommended Acceptable Biological Catches for 1993. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.

Contract Report

1996

Marsh, D. M., J. R. Harmon, K. W. McIntyre, K. L. Thomas, N. N. Paasch, B. P. Sandford, D. J. Kamikawa, G. M. Matthews. 1996. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1995. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract DACW68-84-H-0034, 43 p. plus appendix.

1995

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1993. Report to the Bonneville Power Administration, Contract 91BP18800, Project No. 91-28, 88 p.

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1994. Report to the Bonneville Power Administration, Contract DE-A179-91BP18800, Project No. 91-028, 100 p.

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the smolt migrations of wild Snake River spring/summer chinook salmon smolts, 1993. Report to the Bonneville Power Administration, Contract 91BP18800, Project No. 91-28, 88 p.

Harmon, J. R., D. J. Kamikawa, B. P. Sandford, K. W. McIntyre, K. L. Thomas, N. N. Paasch, G. M. Matthews. 1995. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1993. Report to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 37 p. plus appendices.

Muir, W. D., S. G. Smith, R. N. Iwamoto, D. J. Kamikawa, K. W. McIntyre, E. E. Hockersmith, B. P. Sandford, P. A. Ocker, T. E. Ruehle, J. G. Williams, J. R. Skalski. 1995. Survival estimates for the passage of juvenile salmonids through Snake River dams and reservoirs, 1994. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 187 p.

1994

Achord, S., G. M. Matthews, D. M. Marsh, B. P. Sandford, D. J. Kamikawa. 1994. Monitoring the migrations of wild Snake River spring and summer chinook salmon smolts, 1992. Report to the Bonneville Power Administration, Contract DE-AI79-91BP18800, 73 p.

Technical Memorandum

2008

Keller, A. A., B. H. Horness, E. L. Fruh, V. H. Simon, V. J. Tuttle, K. L. Bosley, J. C. Buchanan, D. J. Kamikawa, J. R. Wallace. 2008. The 2005 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-93, 136 p.

2007

Keller, A. A., V. H. Simon, B. H. Horness, J. R. Wallace, V. J. Tuttle, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. C. Buchanan. 2007. The 2003 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-86, 130 p.

Keller, A. A., B. H. Horness, V. H. Simon, V. J. Tuttle, J. R. Wallace, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. C. Buchanan. 2007. The 2004 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-87, 134 p.

2006

Keller, A. A., E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. R. Wallace, B. H. Horness, V. H. Simon, V. J. Tuttle. 2006. The 2001 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-72, 175 p.

Keller, A. A., B. H. Horness, V. J. Tuttle, J. R. Wallace, V. H. Simon, E. L. Fruh, K. L. Bosley, D. J. Kamikawa. 2006. The 2002 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-75, 189 p.

2005

Keller, A. A., T. L. Wick, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. R. Wallace, B. H. Horness. 2005. The 2000 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-70, 163 p.

2003

Rogers, J. B. 2003. Species Allocation of Sebastes and Sebastolobus sp. caught by foreign countries from 1965 through 1976 off Washington, Oregon, and California, USA. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-57, 117 p.

2002

Ramsey, T. B., T. A. Turk, E. L. Fruh, J. R. Wallace, B. H. Horness, A. J. Cook, K. L. Bosley, D. J. Kamikawa, L. C. Hufnagle Jr., K. Piner. 2002. The 1999 Northwest Fisheries Science Center Pacific West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-55, 143 p.

2001

Turk, T. A., T. L. Builder, C. W. West, D. J. Kamikawa, J. R. Wallace, R. D. Methot, A. R. Bailey, K. L. Bosley, A. J. Cook, E. L. Fruh, B. H. Horness, K. Piner, H. R. Sanborn, W. W. Wakefield. 2001. The 1998 Northwest Fisheries Science Center Pacific West Coast Upper Continental Slope Trawl Survey of Groundfish Resources off Washington, Oregon, and California: Estimates of Distribution, Abundance, and Length Composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-50, 122 p.

1989

Rogers, J. B. 1989. Life history characteristics of commercially important groundfish species off. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-166, 39 p.

Thesis

1994

Rogers, J. B. 1994. Assemblages of groundfish caught using commercial fishing strategies off the coasts of Oregon and. Ph.D. Oregon State University, Corvallis, OR, 133 p.

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