1 ARCHAEA 1169 seqs 1.1 EURYARCHAEOTA 874 seqs 1.1.1 METHANOCOCCALES 24 seqs 1.1.1.1 MC.JANNASCHII_GROUP 20 seqs 1.1.1.1.2104 OTU 1 seq prokMSA_id:18 clone ABS12 1.1.1.1.2141 OTU 5 seqs prokMSA_id:27 clone ST1-16 prokMSA_id:28 clone S15-2 prokMSA_id:29 clone S15-4 prokMSA_id:30 clone S15-6 prokMSA_id:31 clone S30-7 1.1.1.1.2147 OTU 3 seqs prokMSA_id:69659 clone G26_C49 prokMSA_id:69745 clone G26_C45 prokMSA_id:73911 clone G26_C5 1.1.1.1.2154 OTU 1 seq prokMSA_id:52158 euryarchaeote MERTZ_21CM_297 1.1.1.1.2196 OTU 1 seq prokMSA_id:29288 archaebacteria clone ABS3 1.1.1.1.2202 OTU 1 seq prokMSA_id:48249 Methanothermococcus okinawensis 1.1.1.1.2216 OTU 1 seq prokMSA_id:73906 SAGMA-F 1.1.1.1.2231 OTU 1 seq prokMSA_id:21 clone pMC2A5 1.1.1.1.2233 OTU 1 seq prokMSA_id:26 Methanococcus thermolithotrophicus str. SN-1 DSM 2095 1.1.1.1.2236 OTU 1 seq prokMSA_id:54381 clone RS0-24 1.1.1.1.2271 OTU 1 seq prokMSA_id:2 clone ABS9 1.1.1.1.2277 OTU 1 seq prokMSA_id:26100 SAGMA-E 1.1.1.1.2282 OTU 1 seq prokMSA_id:4 clone pISA18 1.1.1.1.2283 OTU 1 seq prokMSA_id:6 clone Rot20 1.1.1.2 MC.MARIPALUDIS_GROUP 4 seqs 1.1.1.2.2191 OTU 3 seqs prokMSA_id:37 Methanococcus vannielii str. EY33 prokMSA_id:42 Methanococcus maripaludis str. D. NONE prokMSA_id:43 Methanococcus maripaludis str. LL 1.1.1.2.2281 OTU 1 seq prokMSA_id:36765 Methanococcus sp. P2F9701a 1.1.2 METHANOBACTERIALES 129 seqs 1.1.2.1 MT.FERVIDUS_GROUP 10 seqs 1.1.2.1.2261 OTU 1 seq prokMSA_id:46 Methanothermus fervidus 1.1.2.1.2266 OTU 1 seq prokMSA_id:48 clone pBRKC82 1.1.2.1.2268 OTU 1 seq prokMSA_id:49 unnamed organism 1.1.2.1.2276 OTU 1 seq prokMSA_id:50 clone KTK 9A 1.1.2.1.2279 OTU 1 seq prokMSA_id:52 clone KTK 28A 1.1.2.1.2280 OTU 1 seq prokMSA_id:54 clone pMC2A24 1.1.2.1.2304 OTU 4 seqs prokMSA_id:51 clone KTK 18A. AJ133623 prokMSA_id:18294 SA2 group euryarchaeote clone ST-12K24A prokMSA_id:33564 SA2 group euryarchaeote clone ST-12K22A AJ347789 prokMSA_id:39923 Euryarchaeote J4.75-24 1.1.2.2 METHANOBACTERIUM_GROUP 119 seqs 1.1.2.2.1 MB.FORMICICUM_SUBGROUP 78 seqs 1.1.2.2.1.2080 OTU 3 seqs prokMSA_id:58 clone TA1f2 prokMSA_id:37573 BURTON2_A prokMSA_id:45897 BURTON20_A 1.1.2.2.1.2082 OTU 1 seq prokMSA_id:48957 SAGMA-K 1.1.2.2.1.2088 OTU 1 seq prokMSA_id:24205 methanogenic endosymbiont of Nyctotherus ovalis 1.1.2.2.1.2098 OTU 1 seq prokMSA_id:16893 SAGMA-J 1.1.2.2.1.2110 OTU 3 seqs prokMSA_id:118 Methanobrevibacter smithii. AF054208 prokMSA_id:125 Methanobrevibacter sp. str. HO DSM 11977 prokMSA_id:95844 Methanobrevibacter sp. ZA-10 AY196673 1.1.2.2.1.2116 OTU 1 seq prokMSA_id:21835 Euryarchaeote J4.75-15 1.1.2.2.1.2119 OTU 6 seqs prokMSA_id:201 clone WCHA1-57 prokMSA_id:27098 39-2 AF424769 prokMSA_id:32110 69-1 prokMSA_id:51118 46-1 AF424764 prokMSA_id:52425 44A-1 prokMSA_id:62886 euryarchaeote clone:KuA13 1.1.2.2.1.2124 OTU 2 seqs prokMSA_id:45914 euryarchaeote clone P3-Ar-10 prokMSA_id:51931 euryarchaeote clone P3-Ar-23 1.1.2.2.1.2128 OTU 1 seq prokMSA_id:200 clone VAL68 1.1.2.2.1.2145 OTU 1 seq prokMSA_id:75 Methanobacterium formicicum DSM 3636 1.1.2.2.1.2162 OTU 1 seq prokMSA_id:57 Methanosphaera stadtmanae str. MCB-3 DSM 3091 1.1.2.2.1.2165 OTU 7 seqs prokMSA_id:58991 19b-9 clone 19b-9 prokMSA_id:59050 19c-50 clone 19c-50 prokMSA_id:59052 19c-18 clone 19c-18 prokMSA_id:59057 19c-10 clone 19c-10 prokMSA_id:59071 19b-41 clone 19b-41 prokMSA_id:59085 19b-2 clone 19b-2 prokMSA_id:59086 19b-1 clone 19b-1 1.1.2.2.1.2185 OTU 1 seq prokMSA_id:69892 TA1c9 1.1.2.2.1.2206 OTU 5 seqs prokMSA_id:17811 SA1 group euryarchaeote clone ST-12K11A prokMSA_id:24075 SA1 group euryarchaeote clone ST-3K26A prokMSA_id:32440 SA1 group euryarchaeote clone ST-12K28A prokMSA_id:46891 SA1 group euryarchaeote clone ST-3K65A AJ347781 prokMSA_id:52466 SA1 group euryarchaeote clone ST-3K1A 1.1.2.2.1.2241 OTU 5 seqs prokMSA_id:77 Methanobrevibacter smithii str. PS DSM 861 prokMSA_id:122 Methanobrevibacter smithii str. ALI prokMSA_id:123 Methanobrevibacter smithii str. B181 DSM 11975 prokMSA_id:130 Methanobrevibacter sp. str. SM9 prokMSA_id:29783 rumen methanogen M6 1.1.2.2.1.2247 OTU 2 seqs prokMSA_id:29032 SM1K20 prokMSA_id:52505 SM1 1.1.2.2.1.2255 OTU 2 seqs prokMSA_id:33106 SA1 group euryarchaeote clone ST-12K10A prokMSA_id:41854 SA1 group euryarchaeote clone ST-3K54A 1.1.2.2.1.2272 OTU 28 seqs prokMSA_id:79 Methanobacterium bryantii str. RiH2. AF028688 prokMSA_id:86 Methanobrevibacter sp. str. GS DSM 11979 prokMSA_id:114 Methanobrevibacter sp. str. NT7 prokMSA_id:115 Methanobrevibacter sp. str. MB-9 prokMSA_id:127 Methanobrevibacter sp. str. SH DSM 11976. U55240 prokMSA_id:128 Methanobrevibacter sp. str. RT prokMSA_id:138 Methanobrevibacter cuticularis str. RFM-1 DSM 11139 . U41095 prokMSA_id:139 Methanobrevibacter filiformis str. RFM-3 DSM 11501 prokMSA_id:141 Methanobrevibacter HW3. AB026925 prokMSA_id:150 Methanobrevibacter curvatus str. RFM-2 DSM 11111 prokMSA_id:152 Methanobrevibacter RsW2. AB026915 prokMSA_id:153 Methanobrevibacter RsI17. AB026919 prokMSA_id:154 Methanobrevibacter LHD2. AB026920 prokMSA_id:158 Methanobrevibacter HW2. AB026924 prokMSA_id:175 Methanobrevibacter RsI12. AB026918 prokMSA_id:21086 rumen methanogen 15 prokMSA_id:22694 Methanobrevibacter sp. ATM AF242652 prokMSA_id:24414 Methanobrevibacter arboriphilus prokMSA_id:38084 rumen methanogen 956 prokMSA_id:39249 Methanobrevibacter sp. HW23 AB033293 prokMSA_id:39741 Methanobrevibacter sp. LRsD4 AB033290 prokMSA_id:43504 Methanobrevibacter sp. RsW3 AB033291 prokMSA_id:84255 euryarchaeote clone 15ar16 AY251026 prokMSA_id:92357 Methanobacterium sp. 8-2 AY350742 prokMSA_id:95916 Methanobrevibacter ruminantium AY196666 prokMSA_id:96099 Methanobacterium bryantii strain MOHG AY196658 prokMSA_id:97471 Methanobacterium bryantii strain MOH AY196657 prokMSA_id:97554 Methanobacterium formicicum AY196659 1.1.2.2.1.2284 OTU 1 seq prokMSA_id:44789 Euryarchaeote J4.75-12 1.1.2.2.1.2285 OTU 6 seqs prokMSA_id:203 clone vadinDC06 prokMSA_id:18599 Methanobacterium curvum prokMSA_id:44183 Methanobacterium congolense prokMSA_id:77878 Methanobacteriaceae clone AEC 3 M71 prokMSA_id:77966 Methanobacteriaceae clone AEC 2 M46 prokMSA_id:78121 Methanobacteriaceae clone AMC 3 M14 1.1.2.2.2 MB.THERMOAUTOTROPHICUM_SUBGROUP 41 seqs 1.1.2.2.2.2073 OTU 3 seqs prokMSA_id:237 unnamed organism prokMSA_id:58504 clone:pHAuA-5 prokMSA_id:78558 clone:OHKA2.33 1.1.2.2.2.2173 OTU 22 seqs prokMSA_id:216 Methanothermobacter thermophilus str. M VKM B-1786 prokMSA_id:217 Methanobacterium wolfei. X89406 prokMSA_id:219 Methanobacterium thermoautotrophicum str. CSM3 prokMSA_id:221 Methanobacterium thermoautotrophicum str. FF3 prokMSA_id:222 Methanobacterium thermoautotrophicum str. CB12 OCM 36 prokMSA_id:223 Methanobacterium thermoautotrophicum str. Marburg prokMSA_id:225 Methanothermobacter thermoflex str. IDZ VKM B-1963 prokMSA_id:226 Methanobacterium thermoautotrophicum str. FF1 prokMSA_id:227 Methanobacterium thermoautotrophicum str. ZH3 DSM 9446 prokMSA_id:229 Methanobacterium thermoautotrophicum str. CB12 ATCC 43574. N prokMSA_id:233 Methanobacterium thermoautotrophicum str. KHT-2 prokMSA_id:234 Methanobacterium thermoautotrophicum str. THF prokMSA_id:235 Methanobacterium thermoautotrophicum str. HN4 prokMSA_id:236 Methanothermobacter defluvii str. ADZ VKM B-1962 prokMSA_id:238 Methanobacterium thermoautotrophicum str. delta H prokMSA_id:239 Methanobacterium thermoautotrophicum str. delta H prokMSA_id:241 Methanobacterium thermoautotrophicum str. Z-245 DSM 3720 prokMSA_id:242 Methanobacterium thermoautotrophicum str. delta H prokMSA_id:251 Methanobacterium thermoautotrophicum str. FTF prokMSA_id:67146 clone:LCB prokMSA_id:67147 clone:LCA prokMSA_id:81334 Methanothermobacter wolfeii 1.1.2.2.2.2183 OTU 6 seqs prokMSA_id:18834 TA1b12 AF134385 prokMSA_id:48616 BA2e8 AF134383 prokMSA_id:53542 AT425_ArB7 prokMSA_id:93665 clone GZfosARC_25D1 AY324375 prokMSA_id:93719 clone GZfosARC_1C11 AY324374 prokMSA_id:93742 clone BR34ARC_C03 AY324378 1.1.2.2.2.2235 OTU 1 seq prokMSA_id:249 clone pMC1A4 1.1.2.2.2.2257 OTU 5 seqs prokMSA_id:243 clone TA1a9 prokMSA_id:20341 TA1a6 prokMSA_id:35808 BA1a2 prokMSA_id:36790 BA1b1 prokMSA_id:94129 clone F17.1ARC_A01 AY324382 1.1.2.2.2.2292 OTU 4 seqs prokMSA_id:245 unnamed organism. AF119124 prokMSA_id:248 unnamed organism. AF119140 prokMSA_id:56753 clone FZ2aA62 prokMSA_id:56767 clone FZ1aA168 1.1.3 METHANOMICROBACTERIA_AND_RELATIVES 641 seqs 1.1.3.1 METHANOMICROBIALES 182 seqs 1.1.3.1.1 MCU.BOURGENSE_SUBGROUP 133 seqs 1.1.3.1.1.2078 OTU 1 seq prokMSA_id:30524 marine pN1-2 1.1.3.1.1.2084 OTU 1 seq prokMSA_id:300 clone SYA-133 1.1.3.1.1.2089 OTU 1 seq prokMSA_id:303 clone SYA-45 1.1.3.1.1.2094 OTU 1 seq prokMSA_id:314 Methanoculleus MAB3 str. MAB3 1.1.3.1.1.2093 OTU 1 seq prokMSA_id:312 Methanoculleus MAB1 str. MAB1 1.1.3.1.1.2102 OTU 5 seqs prokMSA_id:306 str. DCM875 prokMSA_id:28555 euryarchaeote AT-200_29 prokMSA_id:45211 euryarchaeote ME-450_38 prokMSA_id:50813 marine AEGEAN_60 prokMSA_id:84991 clone:pCIRA-15 1.1.3.1.1.2105 OTU 1 seq prokMSA_id:34486 euryarchaeote VAL147 clone VAL147 1.1.3.1.1.2121 OTU 1 seq prokMSA_id:18762 clone TDC-AR4 1.1.3.1.1.2131 OTU 2 seqs prokMSA_id:253 clone 2C25 prokMSA_id:255 clone 2MT8 1.1.3.1.1.2161 OTU 16 seqs prokMSA_id:263 clone 2MT120 prokMSA_id:264 Methanogenium ACE1_A prokMSA_id:265 Methanogenium organophilum prokMSA_id:266 Methanogenium frigidum OCM 469. AF009219 prokMSA_id:24448 2C169 prokMSA_id:26952 2C130 prokMSA_id:31414 O23E2 prokMSA_id:49083 O23C7 prokMSA_id:72379 O23D1 AF220336 prokMSA_id:72381 euryarchaeote EHB156 AF374279 prokMSA_id:72572 euryarchaeote EHB158 AF374277 prokMSA_id:74196 euryarchaeote EHB154 AF374278 prokMSA_id:78486 Methanogenium sp. clone SB13 prokMSA_id:78517 Methanogenium sp. clone LH14 prokMSA_id:78642 Methanogenium sp. clone LH23 prokMSA_id:78953 Methanogenium sp. clone SB18 1.1.3.1.1.2171 OTU 1 seq prokMSA_id:26253 AT425_ArD10 1.1.3.1.1.2188 OTU 1 seq prokMSA_id:260 Methanoplanus petrolearius SEBR 4847 1.1.3.1.1.2228 OTU 8 seqs prokMSA_id:298 unnamed organism prokMSA_id:299 Methanocalculus halotolerans SEBR 4845 prokMSA_id:19259 Methanocalculus sp. K1F9705b prokMSA_id:41198 Methanocalculus sp. K1F9705c prokMSA_id:42125 Methanocalculus taiwanense strain P2F9704a prokMSA_id:45899 Methanocalculus halotolerans strain P2F9705 prokMSA_id:74785 Methanocalculus sp. O1F9702c prokMSA_id:83974 Methanocalculus chunshungensis 1.1.3.1.1.2234 OTU 2 seqs prokMSA_id:257 Methanomicrobium mobile str. BP DSM 1539 prokMSA_id:50770 rumen methanogen Hole9 1.1.3.1.1.2243 OTU 1 seq prokMSA_id:37655 2C174 1.1.3.1.1.2244 OTU 2 seqs prokMSA_id:258 clone BURTON24_A prokMSA_id:261 clone ACE4_A 1.1.3.1.1.2245 OTU 1 seq prokMSA_id:252 Methanoplanus limicola str. M3 DSM 2279 1.1.3.1.1.2248 OTU 1 seq prokMSA_id:254 clone 2C84 1.1.3.1.1.2250 OTU 1 seq prokMSA_id:256 Methanoplanus endosymbiosus str. MC1 GDVogels DSM 3599 1.1.3.1.1.2274 OTU 52 seqs prokMSA_id:267 Methanoculleus palmolei str. INSLUZ DSM 4273 prokMSA_id:294 Methanoculleus marisnigri str. JR1 ATCC 35101 prokMSA_id:295 Methanoculleus marisnigri str. CoCam prokMSA_id:296 unnamed organism. AF157519 prokMSA_id:304 Methanoculleus thermophilicus str. TCI DSM 3915 prokMSA_id:308 Methanoculleus olentangyi str. RC/ER OCM 52 . AF095270 prokMSA_id:309 clone 2C87 prokMSA_id:310 clone 2MT196. AF015985 prokMSA_id:311 unnamed organism. AF157518 prokMSA_id:316 Methanoculleus bourgense str. MS2 ATCC 43281 . NONE prokMSA_id:317 Methanoculleus bourgensis str. MS2. AF095269 prokMSA_id:318 Methanoculleus olentangyi str. RC/ER ATCC 35293 . NONE prokMSA_id:16936 clone GW60-13-38 AY062220 prokMSA_id:26465 anaerobic methanogenic E15-1 prokMSA_id:26720 Methanoculleus chikugoensis strain:MG62 prokMSA_id:28508 isolate MUAHR 10 AF376797 prokMSA_id:29601 anaerobic methanogenic E30-5 AJ244301 prokMSA_id:30915 clone GW70-20-6 AY062235 prokMSA_id:33933 anaerobic methanogenic E15-3 prokMSA_id:44000 clone GW60-13-4 AY062222 prokMSA_id:44094 clone GW60-13-1 AY062218 prokMSA_id:44296 anaerobic methanogenic E15-10 prokMSA_id:44379 clone GW70-10-35 AY062230 prokMSA_id:45011 clone GW60-13-3 AY062221 prokMSA_id:48761 clone GW70-10-10 AY062225 prokMSA_id:55959 clone DERR12 prokMSA_id:58532 clone LK28 AJ493110 prokMSA_id:58533 clone LK49 AJ493107 prokMSA_id:58534 clone LK31 AJ493109 prokMSA_id:58537 clone LK26 AJ493103 prokMSA_id:58538 clone LK50 AJ493104 prokMSA_id:63713 clone DERS7 prokMSA_id:63714 clone DERS6 AJ412784 prokMSA_id:63723 clone DERS4 prokMSA_id:63724 clone DERS5 AJ412783 prokMSA_id:63729 clone DERR10 prokMSA_id:67141 clone:LCD prokMSA_id:69299 clone LK16 AJ493099 prokMSA_id:69300 Methanoculleus oldenburgensis prokMSA_id:69442 clone LK23 AJ493108 prokMSA_id:69616 clone LK9 AJ493097 prokMSA_id:69714 clone LK13 AJ493095 prokMSA_id:70145 Methanoculleus submarinus prokMSA_id:70246 clone LK14 AJ493102 prokMSA_id:71365 clone LK4 AJ493098 prokMSA_id:73005 clone LK45 AJ493096 prokMSA_id:73658 clone LK15 AJ493093 prokMSA_id:82879 euryarchaeote clone:AA01 prokMSA_id:84703 clone AR2_8 prokMSA_id:91502 Methanoculleus thermophilicus AB065297 prokMSA_id:93802 clone CM20 AY368461 prokMSA_id:98731 Methanoculleus bourgensis AY196674 1.1.3.1.1.2286 OTU 33 seqs prokMSA_id:269 clone WCHD3-07 prokMSA_id:16528 AM-10 AB056013 prokMSA_id:27240 OS-23 AB056048 prokMSA_id:28545 19-1 prokMSA_id:29292 euryarchaeote r-5_06C AF473903 prokMSA_id:30469 OS-16 AB056041 prokMSA_id:32200 OS-8 AB056033 prokMSA_id:37119 57-1 prokMSA_id:39739 OS-13 AB056038 prokMSA_id:50440 Toluene-degrading methanogenic consortium M1 prokMSA_id:55255 Methanoculleus palmolei clone 2a AF509447 prokMSA_id:56516 Methanoculleus palmolei clone 12a AF509439 prokMSA_id:62887 Methanomicrobiales clone:KuA12 prokMSA_id:66206 Methanocorpusculum bavaricum clone 50i AF509456 prokMSA_id:66210 Methanocorpusculum bavaricum clone 51i AF509457 prokMSA_id:66213 Methanoculleus palmolei clone 44i AF509453 prokMSA_id:66215 Methanoculleus palmolei clone 45i AF509454 prokMSA_id:66220 Methanoculleus palmolei clone 1a AF509444 prokMSA_id:66225 Methanospirillum hungatei clone 10e AF509437 prokMSA_id:66889 clone SHC-88 AJ312019 prokMSA_id:77921 Methanomicrobiales clone AMC 1 M21 AJ459899 prokMSA_id:81190 methanogenic clone FenH- AJ548953 prokMSA_id:81349 methanogenic clone FenW- AJ548949 prokMSA_id:81531 methanogenic clone FenR- AJ548950 prokMSA_id:81538 methanogenic clone FenK- AJ548952 prokMSA_id:81750 methanogenic clone FenI- AJ548947 prokMSA_id:81899 methanogenic clone FenZ- AJ548946 prokMSA_id:82322 methanogenic clone FenH1- AJ548948 prokMSA_id:84116 clone AF6 AY092163 prokMSA_id:85604 euryarchaeote clone 15ar18 prokMSA_id:85882 clone AF7 AY092165 prokMSA_id:90496 clone Stme2 AY294415 prokMSA_id:90666 clone Stme4 AY294409 1.1.3.1.2 MF.TATIONIS_SUBGROUP 4 seqs 1.1.3.1.2.2225 OTU 4 seqs prokMSA_id:328 Methanofollis liminatans str. GKZPZ DSM 4140 prokMSA_id:329 Methanofollis liminatans DSM 10196 prokMSA_id:22804 Methanofollis sp. N2F9704 prokMSA_id:96483 Methanofollis liminatans AY196677 1.1.3.1.3 MSP.HUNGATEI_SUBGROUP 10 seqs 1.1.3.1.3.2103 OTU 1 seq prokMSA_id:338 unnamed organism 1.1.3.1.3.2146 OTU 1 seq prokMSA_id:345 clone SYA-50 1.1.3.1.3.2168 OTU 3 seqs prokMSA_id:340 clone MNt1 prokMSA_id:341 clone MNt2 prokMSA_id:342 clone MPn1 1.1.3.1.3.2172 OTU 4 seqs prokMSA_id:336 Methanospirillum hungatei str. JF1 DSM 864 prokMSA_id:343 Methanospirillum sp prokMSA_id:43804 clone AC43 AJ288312 prokMSA_id:97855 Methanospirillum hungatei AY196683 1.1.3.1.3.2232 OTU 1 seq prokMSA_id:344 clone SYA-77 1.1.3.1.4 MCR.PARVUM_SUBGROUP 35 seqs 1.1.3.1.4.2077 OTU 18 seqs prokMSA_id:347 symbiont of Trimyema compressa. M96976 prokMSA_id:348 symbiont of archaeobacterial symbiont of Trimyema sp. Z16412 prokMSA_id:349 symbiont of archaeobacterial symbiont of Metopus contortus prokMSA_id:25498 isolate MUAHR 6 AF376793 prokMSA_id:34398 isolate MUAHR 4 AF376791 prokMSA_id:82638 clone CARB_AR1_1 AY239517 prokMSA_id:84012 clone AR2_6 AY231361 prokMSA_id:84058 clone CARB_AR1_4 AY239520 prokMSA_id:84212 clone AR1R2_3 prokMSA_id:84307 clone AR1R2_1 AY231351 prokMSA_id:85040 clone AR2_10 AY231364 prokMSA_id:85920 clone CARB_AR1_6 AY239522 prokMSA_id:86048 clone AR1R2_4 prokMSA_id:86278 clone AR1_5 AY231355 prokMSA_id:92492 ZAR20 AY341317 prokMSA_id:92733 ZAR11 AY341307 prokMSA_id:92887 ZAR7 AY341315 prokMSA_id:93046 ZAR8 AY341316 1.1.3.1.4.2278 OTU 17 seqs prokMSA_id:350 Methanocorpusculum labreanum str. Z ATCC 43576 . NONE prokMSA_id:352 Methanocorpusculum sinense str. China Z DSM 4274 . AF095268 prokMSA_id:353 Methanocorpusculum labreanum str. Z DSM 4855 . AF095267 prokMSA_id:356 Methanocorpusculum parvum str. XII ATCC 43721 . M59147 prokMSA_id:31702 equine intestinal archaeal sp. DL11 clone DL11 prokMSA_id:39103 equine intestinal clone:YT28 prokMSA_id:39974 Methanocorpusculum parvum strain IF9601b prokMSA_id:66890 clone SHC-268 prokMSA_id:71599 C1_R002 prokMSA_id:75506 methanogenic symbiont PA127 AB062302 prokMSA_id:75579 methanogenic symbiont PA123 AB062305 prokMSA_id:76282 methanogenic symbiont ST152 AB062304 prokMSA_id:76790 methanogenic symbiont ST131 AB062301 prokMSA_id:83370 Methanocorpusculum sp. MSP prokMSA_id:85117 Methanocorpusculum labreanum prokMSA_id:86427 Methanocorpusculum parvum prokMSA_id:97068 Methanocorpusculum bavaricum AY196676 1.1.3.2 METHANOSARCINALES 152 seqs 1.1.3.2.1 METHANOSARCINA_AND_RELATIVES 122 seqs 1.1.3.2.1.2067 OTU 1 seq prokMSA_id:35246 Euryarchaeote DJ3.25-13 1.1.3.2.1.2072 OTU 1 seq prokMSA_id:470 clone S30-29 1.1.3.2.1.2095 OTU 1 seq prokMSA_id:422 symbiont of Plagiopyla frontata 1.1.3.2.1.2099 OTU 1 seq prokMSA_id:20092 RSS50-7 clone RSS50-7 1.1.3.2.1.2101 OTU 1 seq prokMSA_id:475 str. GS1-A 1.1.3.2.1.2113 OTU 1 seq prokMSA_id:73685 C1_R046 1.1.3.2.1.2125 OTU 2 seqs prokMSA_id:20184 Green Bay ferromanganous micronodule ARB5 prokMSA_id:74581 Green Bay ferromanganous micronodule ARC3 1.1.3.2.1.2127 OTU 7 seqs prokMSA_id:472 Methanosarcina siciliae str. C2J prokMSA_id:490 Methanosarcina barkeri str. MS DSM 800 prokMSA_id:491 Methanosarcina barkeri str. Sar prokMSA_id:498 clone vadinCA25 prokMSA_id:514 Methanosarcina barkeri str. CM1 prokMSA_id:67692 Methanosarcina acetivorans str. C2A section 99 of 534 of the prokMSA_id:67693 Methanosarcina acetivorans str. C2A section 529 of 534 of th 1.1.3.2.1.2133 OTU 1 seq prokMSA_id:427 clone BURTON-12 1.1.3.2.1.2134 OTU 1 seq prokMSA_id:428 clone pMC2A203 1.1.3.2.1.2139 OTU 1 seq prokMSA_id:429 clone pMC2A33 1.1.3.2.1.2143 OTU 6 seqs prokMSA_id:380 clone vadinDA05 prokMSA_id:476 Methanosarcina FR str. FR prokMSA_id:67139 clone:LCE prokMSA_id:83898 Methanosarcina sp. MS prokMSA_id:85506 Methanosarcina sp. MM prokMSA_id:88792 Methanosarcina sp. JL01 AF519802 1.1.3.2.1.2158 OTU 1 seq prokMSA_id:442 clone pBRKC129 1.1.3.2.1.2159 OTU 1 seq prokMSA_id:443 clone S15-27 1.1.3.2.1.2160 OTU 1 seq prokMSA_id:45908 Euryarchaeote D4.75-4 1.1.3.2.1.2201 OTU 30 seqs prokMSA_id:444 clone TA1a4. AF134384 prokMSA_id:20168 At425_ArD2 AY053472 prokMSA_id:21515 AT425_ArE12 prokMSA_id:35354 C1_R048 prokMSA_id:41219 isolate SB-17a1D3 prokMSA_id:59039 19b-31 clone 19b-31 AJ294899 prokMSA_id:59046 19c-45 clone 19c-45 AJ294893 prokMSA_id:59047 19c-49 clone 19c-49 prokMSA_id:59048 19c-36 clone 19c-36 AJ294892 prokMSA_id:59068 19b-46 clone 19b-46 prokMSA_id:59070 19b-38 clone 19b-38 AJ294868 prokMSA_id:59077 19b-24 clone 19b-24 prokMSA_id:59079 19b-23 clone 19b-23 AJ294860 prokMSA_id:59083 19b-7 clone 19b-7 AJ294855 prokMSA_id:69806 CS_R012 prokMSA_id:70991 isolate Eel-36a2A1 prokMSA_id:71136 isolate SB-24a1A12 prokMSA_id:72394 isolate SB-17a1B11 prokMSA_id:72945 isolate Eel-36a2E1 prokMSA_id:73069 C1_R004 prokMSA_id:74281 isolate Eel-36a2A5 prokMSA_id:74364 C1_R019 prokMSA_id:92926 clone 626-27 AY345181 prokMSA_id:93178 Methanosarcinales clone AMOS4A_4113_B05 AY323218 prokMSA_id:94105 Methanosarcinales clone AMOS4A_4113_H05 AY323223 prokMSA_id:95246 Methanosarcinales clone GoM GC234 021R AY211695 prokMSA_id:95425 Methanosarcinales clone GoM GC234 520R AY211701 prokMSA_id:97124 Methanosarcinales clone GoM GC234 607R AY211704 prokMSA_id:98308 Methanosarcinales clone GoM GC234 019R AY211694 prokMSA_id:98490 Methanosarcinales clone GoM GC185 503R AY211685 1.1.3.2.1.2215 OTU 2 seqs prokMSA_id:68322 clone G72_C12 prokMSA_id:68326 clone G72_C1 1.1.3.2.1.2223 OTU 7 seqs prokMSA_id:373 Methanosarcina mazei str. C16 DSM 2053 prokMSA_id:374 Methanosarcina mazei str. SarPi prokMSA_id:439 Methanosarcina mazei str. Go1 prokMSA_id:18470 Methanosarcina mazei strain O1M9704b prokMSA_id:18827 Methanosarcina mazei strain O1M9701 prokMSA_id:30939 Methanosarcina mazei prokMSA_id:84434 Methanosarcina sp. MT 1.1.3.2.1.2246 OTU 4 seqs prokMSA_id:36504 isolate Eel-36a2B9 prokMSA_id:69820 isolate Eel-36a2A4 prokMSA_id:72991 isolate SB-24a1H2 prokMSA_id:73643 isolate SB-24a1C12 1.1.3.2.1.2252 OTU 1 seq prokMSA_id:403 Methanosarcina semesii str. MD1 1.1.3.2.1.2269 OTU 26 seqs prokMSA_id:473 clone MOf1. AB009822 prokMSA_id:474 clone MPn4 prokMSA_id:516 Methanomicrococcus blatticolus str. PA prokMSA_id:16838 euryarchaeote clone P1-Ar-10 AF293508 prokMSA_id:18310 euryarchaeote clone P1-Ar-15 AF293513 prokMSA_id:18593 euryarchaeote clone P1-Ar-26 AF293533 prokMSA_id:18969 euryarchaeote clone P1-Ar-6 prokMSA_id:20977 euryarchaeote clone P3-Ar-24 prokMSA_id:21448 euryarchaeote clone P1-Ar-4 prokMSA_id:21910 euryarchaeote clone P1-Ar-17 AF293526 prokMSA_id:23609 euryarchaeote clone P1-Ar-1 prokMSA_id:32888 euryarchaeote clone P1-Ar-3 prokMSA_id:33973 euryarchaeote clone P1-Ar-28 AF293535 prokMSA_id:35091 euryarchaeote clone P1-Ar-19 AF293527 prokMSA_id:35561 euryarchaeote clone P1-Ar-14 AF293512 prokMSA_id:36045 euryarchaeote clone P1-Ar-16 prokMSA_id:39139 euryarchaeote clone P1-Ar-7 prokMSA_id:40656 euryarchaeote clone P1-Ar-25 AF293532 prokMSA_id:44162 euryarchaeote clone P1-Ar-2 AF293514 prokMSA_id:45534 euryarchaeote clone P1-Ar-13 AF293511 prokMSA_id:46877 euryarchaeote clone P1-Ar-5 prokMSA_id:48239 euryarchaeote clone P1-Ar-27 AF293534 prokMSA_id:50358 euryarchaeote clone P1-Ar-8 AF293520 prokMSA_id:50674 euryarchaeote clone P4b-Ar-18 prokMSA_id:51355 euryarchaeote clone P1-Ar-30 AF293537 prokMSA_id:95892 Methanimicrococcus blatticola AY196680 1.1.3.2.1.2275 OTU 1 seq prokMSA_id:42447 2MT1 1.1.3.2.1.2287 OTU 7 seqs prokMSA_id:437 clone 2MT7. AF015991 prokMSA_id:438 clone BA2H11fin. AF134393 prokMSA_id:69934 isolate SB-24a1B11 prokMSA_id:73952 isolate SB-24a1F10 prokMSA_id:92823 clone 626-29 AY345183 prokMSA_id:93364 clone BR34ARC_C05 AY324379 prokMSA_id:95517 Methanosarcinales clone GoM GC185 517R AY211687 1.1.3.2.1.2291 OTU 10 seqs prokMSA_id:426 Methanococcoides burtonii DSM 6242 prokMSA_id:431 Methanomethylovorans hollandica str. DMS1. AF120163 prokMSA_id:40857 isolate SB-24a1C2 prokMSA_id:44725 Methanococcoides sp. strain NaT1 prokMSA_id:48567 Methanomethylovorans victoriae strain TM prokMSA_id:62890 Methanomethylovorans sp. clone:KuA6 prokMSA_id:66897 clone SHB-143 prokMSA_id:70903 isolate Eel-36a2H11 prokMSA_id:83403 clone:pCIRA-K AB095121 prokMSA_id:83794 Methanomethylovorans sp. ZB 1.1.3.2.1.2299 OTU 7 seqs prokMSA_id:456 clone ARC46 prokMSA_id:493 clone ARC9 prokMSA_id:494 clone ARC31 prokMSA_id:495 clone ARC45 prokMSA_id:496 clone ARC63 prokMSA_id:497 clone ARC64 prokMSA_id:36837 rumen methanogen 2 1.1.3.2.2 METHANOSAETA 30 seqs 1.1.3.2.2.2068 OTU 1 seq prokMSA_id:23885 anaerobic methanogenic E15-7 1.1.3.2.2.2074 OTU 1 seq prokMSA_id:78578 clone MB-12 1.1.3.2.2.2079 OTU 1 seq prokMSA_id:72917 O23F7 1.1.3.2.2.2085 OTU 1 seq prokMSA_id:20919 clone AS17-04 1.1.3.2.2.2107 OTU 5 seqs prokMSA_id:537 clone ARR2 prokMSA_id:546 clone EtOH6 prokMSA_id:573 clone ARR18 prokMSA_id:37876 archeobacteria Clone EtOH2 prokMSA_id:41805 clone AS00-12 1.1.3.2.2.2129 OTU 5 seqs prokMSA_id:538 clone SJC-11b prokMSA_id:19676 TA01 prokMSA_id:49668 TA04 prokMSA_id:62894 Methanosaeta sp. clone:KuA1 prokMSA_id:66894 clone SHB-23 1.1.3.2.2.2130 OTU 5 seqs prokMSA_id:532 Methanosaeta WCHD3-03 prokMSA_id:539 clone SJC-125a prokMSA_id:25452 120A-4 prokMSA_id:32447 61-2 prokMSA_id:86454 euryarchaeote clone 15ar14 1.1.3.2.2.2140 OTU 1 seq prokMSA_id:27475 Methanosaeta sp. Clone A1 1.1.3.2.2.2153 OTU 2 seqs prokMSA_id:22948 Toluene-degrading methanogenic consortium M2 prokMSA_id:67140 clone:LCC 1.1.3.2.2.2155 OTU 1 seq prokMSA_id:549 clone Rot10 1.1.3.2.2.2156 OTU 1 seq prokMSA_id:44079 clone RS0-17 1.1.3.2.2.2157 OTU 1 seq prokMSA_id:560 clone S15-20 1.1.3.2.2.2177 OTU 2 seqs prokMSA_id:533 clone WCHD3-34 prokMSA_id:41595 euryarchaeote clone AS04-16 1.1.3.2.2.2273 OTU 1 seq prokMSA_id:554 clone VAL33-1 1.1.3.2.2.2294 OTU 1 seq prokMSA_id:526 unnamed organism 1.1.3.2.2.2296 OTU 1 seq prokMSA_id:62889 Methanosarcinales clone:KuA7 1.1.3.4 HALOPHILIC_ARCHAEA 199 seqs 1.1.3.4.1 HBM.GOMORRENSE_SUBGROUP 5 seqs 1.1.3.4.1.2290 OTU 3 seqs prokMSA_id:596 clone DEEP-8 prokMSA_id:597 clone DEEP-7 prokMSA_id:598 clone DEEP-6 1.1.3.4.1.2295 OTU 1 seq prokMSA_id:595 clone pBRKC22 1.1.3.4.1.2297 OTU 1 seq prokMSA_id:599 clone DEEP-5 1.1.3.4.2 HF.VOLCANII_SUBGROUP 30 seqs 1.1.3.4.2.2112 OTU 3 seqs prokMSA_id:24020 clone HW10 prokMSA_id:46041 clone HW3 prokMSA_id:50299 clone HW5 1.1.3.4.2.2120 OTU 2 seqs prokMSA_id:39318 Unknown PCR fragment of an archaeal microorganism prokMSA_id:43013 Unknown organism 1.1.3.4.2.2167 OTU 13 seqs prokMSA_id:600 Haloferax mediterranei ATCC 33500 prokMSA_id:603 Haloferax denitrificans ATCC 35960 prokMSA_id:604 Haloferax volcanii str. DS-2 ATCC 29605 prokMSA_id:606 clone 2C82 prokMSA_id:608 Haloferax D1227 str. D1227 prokMSA_id:610 Haloferax gibbonsii ATCC 33959 prokMSA_id:25672 Haloferax volcanii prokMSA_id:29381 2MT310 prokMSA_id:41199 2MT103 AF015982 prokMSA_id:47309 Haloferax alexandrinus complete prokMSA_id:71072 Haloferax denitrificans complete prokMSA_id:74464 Haloferax gibbonsii complete prokMSA_id:89487 Haloarchaeon 8AHG AY292395 1.1.3.4.2.2174 OTU 2 seqs prokMSA_id:35866 ORGANIC5_A prokMSA_id:37132 ORGANIC1_A 1.1.3.4.2.2203 OTU 2 seqs prokMSA_id:611 Haloferax sp. str. Aa 2.2 prokMSA_id:45692 Haloferax alicantei 1.1.3.4.2.2218 OTU 2 seqs prokMSA_id:609 Halogeometricum borinquense str. PR 3 ATCC 700274 prokMSA_id:42829 Halophilic PalaeII strain PalaeII 1.1.3.4.2.2260 OTU 1 seq prokMSA_id:602 clone DEEP-9 1.1.3.4.2.2262 OTU 1 seq prokMSA_id:605 clone 1MT315 1.1.3.4.2.2307 OTU 4 seqs prokMSA_id:39274 JDS-1 prokMSA_id:62506 euryarchaeote clone LA1-A10 prokMSA_id:64078 prokaryote isolate DGGE Band 506-ICM 15% pond AF477953 prokMSA_id:71057 prokaryote isolate DGGE Band 508-ICM 15% pond AF477954 1.1.3.4.3 HR.SACCHAROVORUM_SUBGROUP 27 seqs 1.1.3.4.3.2100 OTU 1 seq prokMSA_id:615 Halorubrum distributum str. I-M JCM 9100 1.1.3.4.3.2106 OTU 3 seqs prokMSA_id:23696 clone HW107 prokMSA_id:53794 A151 prokMSA_id:72249 A154 1.1.3.4.3.2148 OTU 10 seqs prokMSA_id:618 Halorubrum sodomense str. RD-26 ATCC 33755 . X82169 prokMSA_id:624 Halorubrum saccharovorum NCIMB 2081 . X82167 prokMSA_id:625 Halorubrum saccharovorum JCM 8865 prokMSA_id:626 Halorubrum vacuolatum str. M24 JCM 9060 prokMSA_id:627 Halorubrum lacusprofundi ACAM 34 prokMSA_id:632 Halorubrum lacusprofundi JCM 8891 prokMSA_id:23129 Haloarchaeon str. 54R strain 54R AJ270251 prokMSA_id:35867 Haloarchaeon str. MAlk006.3 strain MAlk006.3 prokMSA_id:45762 Halorubrum tibetense AF435111 prokMSA_id:57545 Halorubrum tibetense strain 8W8 AY149598 1.1.3.4.3.2254 OTU 8 seqs prokMSA_id:612 Halobacterium sp. str. Ch2 ACM 3911 prokMSA_id:613 Halobacterium AUS-1 prokMSA_id:616 Halorubrum trapanicum NRC 34021 prokMSA_id:617 Halobacterium AUS-2 prokMSA_id:622 Halorubrum sodomense str. RD-26 ATCC 33755 prokMSA_id:42756 Halobacterium=halophilic Ch2 Genomic 1469 nt prokMSA_id:43177 Halophilic NaxosII strain NaxosII prokMSA_id:71191 Halobacterium sodomense complete 1.1.3.4.3.2289 OTU 1 seq prokMSA_id:619 clone pBRKC112 1.1.3.4.3.2300 OTU 1 seq prokMSA_id:620 clone pBRKC101 1.1.3.4.3.2301 OTU 1 seq prokMSA_id:623 Halorubrum saccharovorum NCIMB 2081 1.1.3.4.3.2305 OTU 1 seq prokMSA_id:628 clone pBRKC128 1.1.3.4.3.2306 OTU 1 seq prokMSA_id:629 clone pBRKC125 1.1.3.4.4 HB.HALOBIUM_SUBGROUP 29 seqs 1.1.3.4.4.2175 OTU 25 seqs prokMSA_id:633 Halobacterium halobium str. R1 prokMSA_id:634 Halobacterium halobium str. R1 prokMSA_id:635 Halobacterium 9R str. 9R prokMSA_id:636 Halobacterium salinarum str. E12 prokMSA_id:637 Halobacterium halobium prokMSA_id:640 Halobacterium sp. str. Y12 prokMSA_id:641 Halobacterium cutirubrum str. clone lambda-Hc4 prokMSA_id:23901 Halobacterium sp. NCIMB 741 prokMSA_id:32933 Halobacterium sp. NRC-1 section 159 of 170 of the complete g prokMSA_id:38000 Haloarchaeon str. BbpA.1 strain BbpA.1 prokMSA_id:40871 Halobacterium sp. NCIMB 733 AB074301 prokMSA_id:44211 Haloarchaeon str. B1bra.5 strain B1bra.5 prokMSA_id:47635 Halobacterium sp. JP-6 prokMSA_id:48009 Halobacterium sp. NRC-1 complete genome AE004437 prokMSA_id:50435 Halobacterium salinarum prokMSA_id:54099 Halobacterium sp. NRC-1 complete genome NC_002607 prokMSA_id:56380 H.cutirubrum cluster and Ala-tRNA complete; 23S 5' end prokMSA_id:63193 Halobacterium salinarum strain DSM 3754T prokMSA_id:68649 Halobacterium sp. JCM 9447 AB081731 prokMSA_id:70968 Halobacterium sp. complete prokMSA_id:81508 Halobacterium sp. A1 prokMSA_id:82712 Halobacterium sp. HM13 AY232300 prokMSA_id:83852 Halobacterium sp. HM01 AY232297 prokMSA_id:83927 Halobacterium sp. HM02 AY232298 prokMSA_id:86046 Halobacterium sp. HM11 AY232299 1.1.3.4.4.2211 OTU 1 seq prokMSA_id:37525 D3.5-B 1.1.3.4.4.2217 OTU 1 seq prokMSA_id:41147 Halobacteriales MT15 1.1.3.4.4.2222 OTU 1 seq prokMSA_id:49296 euryarchaeote clone ST-3K67A 1.1.3.4.4.2267 OTU 1 seq prokMSA_id:26302 Halobacteriales MT14 1.1.3.4.5 NTM.PHARAONIS 10 seqs 1.1.3.4.5.2210 OTU 10 seqs prokMSA_id:643 Natronomonas pharaonis str. Gabara JCM 8858 prokMSA_id:27407 clone HW23 prokMSA_id:56234 clone mHK12.1 AJ517877 prokMSA_id:57386 clone E10.1 AJ517901 prokMSA_id:57390 clone mOO44.2 AJ517895 prokMSA_id:57391 clone mCMC46.6 AJ517892 prokMSA_id:57392 clone mCMC38.5 AJ517890 prokMSA_id:57395 clone mCMC46.5 AJ517891 prokMSA_id:57397 clone mHK36.1 AJ517879 prokMSA_id:70801 clone EMF51 1.1.3.4.6 NTC.AMYLOLYTICUS_SUBGROUP 67 seqs 1.1.3.4.6.2065 OTU 1 seq prokMSA_id:46014 A016 clone A016 1.1.3.4.6.2081 OTU 8 seqs prokMSA_id:639 str. MSP9. AB012051 prokMSA_id:649 str. MSP1 prokMSA_id:650 str. MSP11 prokMSA_id:651 str. MSP12 prokMSA_id:653 str. MSP16 prokMSA_id:654 str. MSP17 prokMSA_id:655 str. MSP22 prokMSA_id:656 str. MSP23 1.1.3.4.6.2086 OTU 1 seq prokMSA_id:37730 Halobacteriaceae gen. sp. 56 1.1.3.4.6.2091 OTU 1 seq prokMSA_id:33887 sp. Lake Magadi isolate 82M4 1.1.3.4.6.2108 OTU 2 seqs prokMSA_id:21201 clone HW88 prokMSA_id:29270 clone HW8 1.1.3.4.6.2136 OTU 3 seqs prokMSA_id:30847 38B-1 prokMSA_id:32775 41-1 prokMSA_id:34918 Natronobacterium gregoryi 1.1.3.4.6.2137 OTU 6 seqs prokMSA_id:644 Halorubrum trapanicum NCIMB 767 prokMSA_id:647 Halorubrum trapanicum NCMB 784 prokMSA_id:666 str. L-11 prokMSA_id:45943 Natrinema sp. R-fish prokMSA_id:72482 Halobacterium trapanicum complete prokMSA_id:74122 Halophilic archaeum complete 1.1.3.4.6.2142 OTU 2 seqs prokMSA_id:27020 Halococcus tibetense AF435112 prokMSA_id:66381 haloarchaeon clone ZB-A22 1.1.3.4.6.2163 OTU 1 seq prokMSA_id:645 Halobacterium sp. str. arg-4 1.1.3.4.6.2176 OTU 1 seq prokMSA_id:659 clone DEEP-2 1.1.3.4.6.2180 OTU 2 seqs prokMSA_id:27978 Halobacterium cutirubrum NCIMB 763 operon AB073365 prokMSA_id:36299 Halobacterium cutirubrum NCIMB 763 rrnB operon 1.1.3.4.6.2197 OTU 1 seq prokMSA_id:18525 sp. Little Lake Magadi isolate 93dLM4 1.1.3.4.6.2205 OTU 2 seqs prokMSA_id:46771 clone HW25 prokMSA_id:49132 clone HW22 1.1.3.4.6.2207 OTU 2 seqs prokMSA_id:658 clone 2MT16 prokMSA_id:17936 2C129 1.1.3.4.6.2213 OTU 34 seqs prokMSA_id:646 Natrinema thermotolerans str. PR 5 prokMSA_id:657 Natronorubrum bangense str. A33 AS 1.1984 prokMSA_id:660 Natronobacterium tibetense str. GA33 prokMSA_id:665 Haloterrigena turkmenica str. 4 VKM B-1734 prokMSA_id:668 Natrialba magadii NCIMB 2190 prokMSA_id:669 Natronobacterium wudunaoensis str. Y21 prokMSA_id:670 str. B1T prokMSA_id:671 Natronobacterium chahannaoensis str. C112 prokMSA_id:672 Natrialba ATCC 43988 str. SSL1 ATCC 43988 prokMSA_id:673 str. 172P1 prokMSA_id:674 Natronococcus occultus ATCC 43101 prokMSA_id:675 Natronococcus amylolyticus str. Ah-36 JCM 9655 prokMSA_id:21979 Natrialba asiatica prokMSA_id:24766 Natrinema versiforme prokMSA_id:28138 Natrialba sp. Tunisia HMg-25 complete prokMSA_id:28549 Natronorubrum sp. Tenzan-10 prokMSA_id:32045 sp. Little Lake Magadi isolate 93lLM4 prokMSA_id:32934 sp. Lake Magadi isolate 89M4 prokMSA_id:36767 Natrialba sp. Tunisia HMg-27 prokMSA_id:38317 Natrialba aegyptiaca complete prokMSA_id:40112 Halobacteriaceae gen. sp. H1 prokMSA_id:42055 sp. Lake Magadi isolate 86M4 prokMSA_id:43132 Halobacteriaceae gen. sp. 135 prokMSA_id:43283 sp. Lake Natron isolate 98NT4 prokMSA_id:47016 Natronorubrum sp. Wadi Natrun-19 prokMSA_id:51196 Natronobacterium innermongoliae prokMSA_id:52324 Natronococcus xinjiangense prokMSA_id:58361 Natronobacterium chagannuoerensis prokMSA_id:58987 Haloterrigena thermotolerans prokMSA_id:72038 Natrialba asiatica prokMSA_id:72475 Natrialba hulunbeirensis AS1.1986 prokMSA_id:73832 Natrialba asiatica prokMSA_id:81102 Natrinema ajinwuensis prokMSA_id:83240 Natrinema sp. HM06 1.1.3.4.7 HC.MORRHUAE_SUBGROUP 15 seqs 1.1.3.4.7.2189 OTU 5 seqs prokMSA_id:678 Halococcus salifodinae str. Blp DSM 8989 prokMSA_id:679 Halococcus salifodinae str. Br3 prokMSA_id:684 Halococcus salifodinae str. BG 2/2 prokMSA_id:685 Halococcus saccharolyticus ATCC 49257 prokMSA_id:73359 Halococcus sp 1.1.3.4.7.2200 OTU 10 seqs prokMSA_id:686 Halococcus morrhuae NRC 16008 prokMSA_id:687 Halococcus morrhuae prokMSA_id:688 Halorubrum trapanicum JCM 8979 prokMSA_id:689 Halococcus morrhuae str. LD.3.1 C.B. van Niel ATCC 17082 prokMSA_id:17584 Halobacterium sp. NCIMB 734 prokMSA_id:27023 Halobacterium sp. NCIMB 765 rrnB operon prokMSA_id:38435 Halobacterium sp. NCIMB 765 operon prokMSA_id:39472 Halococcus dombrowskii strain H4 prokMSA_id:52396 clone HW50 AJ344307 prokMSA_id:83880 Halococcus qingdaogense complete 1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP 16 seqs 1.1.3.4.8.2064 OTU 1 seq prokMSA_id:690 Haloarcula mukohataei 1.1.3.4.8.2066 OTU 2 seqs prokMSA_id:691 str. MSP8. AB012050 prokMSA_id:692 str. MSP41 1.1.3.4.8.2069 OTU 1 seq prokMSA_id:696 Halobacter utahensis str. AX-2 1.1.3.4.8.2111 OTU 5 seqs prokMSA_id:20446 Halosimplex carlsbadense A AF320478 prokMSA_id:21614 Halosimplex carlsbadense B AF320479 prokMSA_id:84278 Halosimplex carlsbadense rrnB operon prokMSA_id:85089 Halosimplex carlsbadense operon genes 23S complete and prokMSA_id:85668 Halosimplex carlsbadense rrnB operon genes tRNA-Ala 23S comp 1.1.3.4.8.2115 OTU 3 seqs prokMSA_id:18167 marine euryarchaeote DH148-Y19 prokMSA_id:34968 marine euryarchaeote DH148-Y15 prokMSA_id:51102 marine euryarchaeote DH148-Y16 1.1.3.4.8.2135 OTU 3 seqs prokMSA_id:47411 Halosimplex carlsbadense C prokMSA_id:83805 Halosimplex carlsbadense operon prokMSA_id:86270 Halosimplex carlsbadense rrnC operon genes tRNA-Ala 23S comp 1.1.3.4.8.2256 OTU 1 seq prokMSA_id:73223 clone EMF3 1.1.3.5 THERMOPLASMALES_AND_RELATIVES 84 seqs 1.1.3.5.1 TPL.ACIDOPHILUM_SUBGROUP 72 seqs 1.1.3.5.1.2071 OTU 1 seq prokMSA_id:716 str. DCM3921 1.1.3.5.1.2096 OTU 1 seq prokMSA_id:43890 clone HTA-H9 1.1.3.5.1.2118 OTU 8 seqs prokMSA_id:20250 112D prokMSA_id:24419 113C prokMSA_id:29379 73A prokMSA_id:31891 66D prokMSA_id:34934 101B prokMSA_id:38604 71A AF268634 prokMSA_id:41358 Ar26 prokMSA_id:54629 60B 1.1.3.5.1.2122 OTU 1 seq prokMSA_id:23572 euryarchaeote ME-450_P9 1.1.3.5.1.2123 OTU 1 seq prokMSA_id:53752 euryarchaeote ME-450_30 1.1.3.5.1.2132 OTU 7 seqs prokMSA_id:727 clone ABS23 prokMSA_id:23326 clone RS300-12 prokMSA_id:26892 archaebacteria clone ARR19 AJ227932 prokMSA_id:45554 archaebacteria clone ARR16 AJ227929 prokMSA_id:48711 clone AS08-17 prokMSA_id:49712 clone AS17-30 prokMSA_id:74688 clone AS08-11 1.1.3.5.1.2164 OTU 5 seqs prokMSA_id:712 clone WCHD3-33 prokMSA_id:722 clone WCHD3-02 prokMSA_id:33637 clone HTA-C7 prokMSA_id:45960 33-1 prokMSA_id:62881 euryarchaeote clone:KuA16 1.1.3.5.1.2166 OTU 1 seq prokMSA_id:710 Picrophilus oshimae str. KAW2/2 DSM 9789 1.1.3.5.1.2169 OTU 1 seq prokMSA_id:713 clone SB95-72 1.1.3.5.1.2170 OTU 1 seq prokMSA_id:714 clone KTK 4A 1.1.3.5.1.2178 OTU 6 seqs prokMSA_id:721 Thermoplasma acidophilum str. 122-1B2 prokMSA_id:27173 Thermoplasma volcanium prokMSA_id:46145 Thermoplasma volcanium complete genome NC_002689 prokMSA_id:47351 Thermoplasma volcanium strain GSS1 prokMSA_id:47977 Thermoplasma acidophilum complete genome NC_002578 prokMSA_id:68998 Thermoplasma volcanium genomic complete section 6/6 AP000996 1.1.3.5.1.2179 OTU 1 seq prokMSA_id:36228 clone archaeap1 1.1.3.5.1.2186 OTU 2 seqs prokMSA_id:16489 SC38 AF225458 prokMSA_id:71237 clone ARCP1-60 1.1.3.5.1.2192 OTU 2 seqs prokMSA_id:34273 rumen M2 prokMSA_id:52339 rumen M7 1.1.3.5.1.2194 OTU 1 seq prokMSA_id:52811 maize root ZmrA19 1.1.3.5.1.2198 OTU 1 seq prokMSA_id:58156 clone AS1 1.1.3.5.1.2204 OTU 1 seq prokMSA_id:63282 clone ARCP1-30 1.1.3.5.1.2227 OTU 4 seqs prokMSA_id:720 Ferromonas metallovorans str. Y prokMSA_id:29649 MS14 prokMSA_id:65352 Ferroplasma sp. MT17 prokMSA_id:85217 Ferroplasma acidiphilum strain DR1 1.1.3.5.1.2229 OTU 1 seq prokMSA_id:22294 Crenarchaeote SRI-298 1.1.3.5.1.2239 OTU 1 seq prokMSA_id:32461 clone A10 1.1.3.5.1.2249 OTU 1 seq prokMSA_id:724 clone vadinCA11 1.1.3.5.1.2251 OTU 1 seq prokMSA_id:725 clone SCALE-3 1.1.3.5.1.2253 OTU 7 seqs prokMSA_id:16713 euryarchaeote clone P4b-Ar-7 AF293504 prokMSA_id:30521 euryarchaeote clone P4b-Ar-10 AF293482 prokMSA_id:45098 euryarchaeote clone P4b-Ar-19 AF293491 prokMSA_id:74993 archaeal symbiont PA201 prokMSA_id:76146 archaeal symbiont PA204 prokMSA_id:76154 archaeal symbiont PA203 prokMSA_id:76707 archaeal symbiont PA202 1.1.3.5.1.2258 OTU 1 seq prokMSA_id:30004 61D 1.1.3.5.1.2265 OTU 13 seqs prokMSA_id:14 clone VC2.1 Arc13. AF068820 prokMSA_id:15 clone pMC2A10 prokMSA_id:719 clone pSSMCA108 prokMSA_id:732 clone pISA42 prokMSA_id:30970 pPACMA-W prokMSA_id:35429 pPACMA-M prokMSA_id:41367 pPACMA-P prokMSA_id:55306 clone pEPR719 AF526962 prokMSA_id:56356 clone G26_C56 AF356635 prokMSA_id:63649 clone pEPR159 AF526964 prokMSA_id:63650 clone pEPR193 prokMSA_id:63654 clone pEPR707 AF526961 prokMSA_id:68328 clone G26_C73 AF356637 1.1.3.5.1.2270 OTU 2 seqs prokMSA_id:723 clone vadinDC79 prokMSA_id:44971 rumen M1 1.1.3.5.2 ENV.SBAR16_SUBGROUP 10 seqs 1.1.3.5.2.2087 OTU 1 seq prokMSA_id:86464 euryarchaeote clone: pCIRA110 1.1.3.5.2.2109 OTU 2 seqs prokMSA_id:733 Santa Barbara Channel clone SBAR16 prokMSA_id:36345 euryarchaeote SB95-35 1.1.3.5.2.2190 OTU 1 seq prokMSA_id:48775 euryarchaeote AM-20A_123 1.1.3.5.2.2303 OTU 6 seqs prokMSA_id:734 coastal surface waters picoplankton from Oregon clone OARB prokMSA_id:27739 euryarchaeote MERTZ_21CM_5 prokMSA_id:88553 euryarchaeote 96C-131-17 AY288386 prokMSA_id:90085 euryarchaeote 96C-55-10 AY288390 prokMSA_id:90329 euryarchaeote 96C-55-08 AY288393 prokMSA_id:93343 clone BSA4-89m AY360483 1.1.3.5.3 ENV.25-7_SUBGROUP 2 seqs 1.1.3.5.3.2208 OTU 2 seqs prokMSA_id:736 Santa Barbara Channel clone SBAR1A prokMSA_id:21548 marine AEGEAN_58 1.1.3.6 ARCHAEOGLOBALES 24 seqs 1.1.3.6.2083 OTU 1 seq prokMSA_id:25153 AT425_ArB9 1.1.3.6.2138 OTU 12 seqs prokMSA_id:740 Archaeoglobus veneficus str. SNP6 DSM 11195 prokMSA_id:743 Archaeoglobus fulgidus str. VC-16 DSM 4304 . X05567 prokMSA_id:744 Archaeoglobus fulgidus. AE000782 prokMSA_id:750 clone VC2.1 Arc2 prokMSA_id:751 VC2.1 Arc4 complete prokMSA_id:755 Archaeoglobus fulgidus str. VC-16 prokMSA_id:50705 Archaeoglobus fulgidus complete genome NC_000917 prokMSA_id:69844 Archaeoglobus veneficus 23S and internal transcribed spacer prokMSA_id:71588 Archaeoglobus lithotrophicus TF2 23S and ITS1 strain TF2 prokMSA_id:71722 Archaeoglobus veneficus DSM 11195 prokMSA_id:73240 Hyperthermophile str. 234 prokMSA_id:74691 Archaeoglobus fulgidus section 142 of 172 of the complete ge 1.1.3.6.2149 OTU 3 seqs prokMSA_id:746 clone pISA16 prokMSA_id:71793 GBa1r013 prokMSA_id:72343 GBa1r010 1.1.3.6.2181 OTU 1 seq prokMSA_id:39716 AT_R040 1.1.3.6.2187 OTU 1 seq prokMSA_id:71091 isolate Eel-36a2G10 1.1.3.6.2214 OTU 6 seqs prokMSA_id:30999 GBa2r045 prokMSA_id:68319 clone G72_C65 prokMSA_id:68320 clone G72_C59 prokMSA_id:68325 clone G72_C3 prokMSA_id:70411 clone G72_C2 prokMSA_id:71148 AT_R022 1.1.4 THERMOCOCCALES 78 seqs 1.1.4.2 TC.AGGREGANS 1 seq 1.1.4.2.2199 OTU 1 seq prokMSA_id:757 Thermococcus aggregans str. TY DSM 10597 1.1.4.3 PC.FURIOSUS_SUBGROUP 17 seqs 1.1.4.3.2076 OTU 2 seqs prokMSA_id:763 Pyrococcus shinkaii str. OT3 prokMSA_id:73290 Pyrococcus horikoshii complete D45214 1.1.4.3.2182 OTU 15 seqs prokMSA_id:758 Pyrococcus sp prokMSA_id:759 Pyrococcus abyssi str. ST546 prokMSA_id:760 Pyrococcus abyssi str. ST549 prokMSA_id:761 Pyrococcus abyssi prokMSA_id:762 Pyrococcus horikoshii str. OT3 prokMSA_id:765 Pyrococcus horikoshii str. JA-1 prokMSA_id:766 Pyrococcus furiosus prokMSA_id:767 Pyrococcus hellenicus str. P3BK17S6-3-a3 prokMSA_id:768 Thermococcus chitonophagus str. GC74 DSM 10152 . X99570 prokMSA_id:769 Pyrococcus sp. str. AL585 prokMSA_id:49491 SAGMA-16 AB050246 prokMSA_id:70123 Pyrococcus horikoshii D87344 prokMSA_id:84011 clone:pCIRA-C AB095114 prokMSA_id:84479 Pyrococcus sp. Tc-2-70 AB095146 prokMSA_id:86433 Thermococcus sp. Tc-1-70 AB095143 1.1.4.4 TC.CELER_SUBGROUP 60 seqs 1.1.4.4.2075 OTU 1 seq prokMSA_id:46965 33-P44A00 1.1.4.4.2195 OTU 1 seq prokMSA_id:24840 SAGMA-G 1.1.4.4.2212 OTU 1 seq prokMSA_id:771 clone pMCA256 1.1.4.4.2219 OTU 1 seq prokMSA_id:772 clone pMC2A209 1.1.4.4.2220 OTU 1 seq prokMSA_id:774 clone pMC2A17 1.1.4.4.2221 OTU 1 seq prokMSA_id:775 clone pISA1 1.1.4.4.2224 OTU 1 seq prokMSA_id:58788 Palaeococcus helgesonii ; -23S intergenic spacer complete ; 1.1.4.4.2226 OTU 3 seqs prokMSA_id:778 clone pMC2A249 prokMSA_id:779 clone pMC2A14. AB019715 prokMSA_id:780 clone pSSMCA1 1.1.4.4.2237 OTU 22 seqs prokMSA_id:777 Thermococcus hydrothermalis str. AL662 prokMSA_id:784 Thermococcus celer str. VU 13 DSM 2476 prokMSA_id:789 Thermococcus barossii prokMSA_id:791 Thermococcus sp. strain P6 prokMSA_id:800 VC2.1 Arc5 complete prokMSA_id:802 VC2.1 Arc16 complete prokMSA_id:803 VC2.1 Arc35 complete prokMSA_id:814 Thermococcus stetteri str. K-3 DSM 5262 prokMSA_id:30578 Thermococcus acidaminovorans strain:DSM 11906 prokMSA_id:30964 Thermococcus gorgonarius strain:JCM 10552 prokMSA_id:31437 Thermococcus gorgonarius strain DSM 10395 prokMSA_id:34911 Desulfurococcus sp. SY prokMSA_id:38459 Thermococcus acidaminovorans strain DSM 11906 prokMSA_id:43730 Thermococcus gammatolerans prokMSA_id:54119 Thermococcus sp. MZ2 ; internal transcribed spacer complete prokMSA_id:54189 Thermococcus sp. MZ1 ; internal transcribed spacer complete prokMSA_id:54583 Thermococcus sp. MZ12 ; internal transcribed spacer complete prokMSA_id:54651 Thermococcus sp. MZ5 ; internal transcribed spacer complete prokMSA_id:54665 Thermococcus sp. MZ13 ; internal transcribed spacer complete prokMSA_id:55014 Thermococcus sp. MZ6 ; internal transcribed spacer complete prokMSA_id:68329 clone G26_C48 prokMSA_id:71185 Thermococcus kodakaraensis genes 23S complete and sequences 1.1.4.4.2238 OTU 1 seq prokMSA_id:34194 SAGMA-I 1.1.4.4.2240 OTU 6 seqs prokMSA_id:790 Thermococcus zilligii str. AN1 prokMSA_id:807 Palaeococcus ferriphilus str. DMJ. AB019239 prokMSA_id:810 Thermococcus waimanguensis str. Wai21.S1 prokMSA_id:811 Thermococcus Rt3 str. Rt3 prokMSA_id:812 Thermococcus waiotapuense str. WT1 prokMSA_id:19786 Thermococcus waiotapuensis strain:JCM 10985 1.1.4.4.2242 OTU 5 seqs prokMSA_id:786 Thermococcus mexicalis str. GY 869 prokMSA_id:787 Thermococcus sp. str. B1001 prokMSA_id:792 Thermococcus aegeaicus str. P5BK17S6-3-b2 prokMSA_id:46577 Thermococcus sibiricus prokMSA_id:48696 Thermococcus alcaliphilus strain:DSM 10322 1.1.4.4.2264 OTU 16 seqs prokMSA_id:770 Thermococcus barophilus str. MP prokMSA_id:799 VC2.1 Arc1 complete prokMSA_id:809 Thermococcus profundus str. DT5432 DSM 9503 prokMSA_id:818 Pyrococcus sp. str. KOD1 prokMSA_id:819 Thermococcus guaymasensis str. TYS JCM 10136 prokMSA_id:18391 Thermococcus radiophilus prokMSA_id:21914 Thermococcus pacificus strain:JCM 10553 prokMSA_id:32059 Thermococcus peptonophilus strain DSM 10343 AJ298871 prokMSA_id:32192 Thermococcus peptonophilus strain DSM 10343 AJ291810 prokMSA_id:33045 Thermococcus siculi strain:DSM 12349 prokMSA_id:34206 Thermococcus pacificus strain DSM 10394 prokMSA_id:48271 Thermococcus siculi strain DSM 12349 AJ298870 prokMSA_id:48581 Thermococcus siculi strain DSM 12349 AJ291808 prokMSA_id:58650 Thermococcus sp. MV1099 23S and ITS 1 prokMSA_id:69804 C1_R034 prokMSA_id:73209 Thermococcus marinus 1.1.5 METHANOPYRALES 2 seqs 1.1.5.2114 OTU 2 seqs prokMSA_id:822 Methanopyrus kandleri str. av19 DSM 6324 prokMSA_id:64372 Methanopyrus kandleri AV19 complete genome 1.2 CRENARCHAEOTA 295 seqs 1.2.1 THERMOPHILIC_CRENARCHAEOTA 174 seqs 1.2.1.2 ENVIRONMENTAL_CLONE_PJP33 1 seq 1.2.1.2.2648 OTU 1 seq prokMSA_id:824 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.1.3 TMF.PENDENS_SUBGROUP 44 seqs 1.2.1.3.2566 OTU 3 seqs prokMSA_id:826 Thermofilum pendens str. Hvv3 DSM 2475 prokMSA_id:49927 Thermofiliaceae str. SRI-370 prokMSA_id:70948 crenarchaeote pBA1 1.2.1.3.2568 OTU 6 seqs prokMSA_id:34207 thermal soil clone YNPFFA4 prokMSA_id:36629 thermal soil clone YNPFFA85 prokMSA_id:37402 thermal soil clone YNPFFA1 prokMSA_id:41999 thermal soil clone YNPFFA23 prokMSA_id:45996 thermal soil clone YNPFFA108 prokMSA_id:63276 clone ARCP1-35 1.2.1.3.2573 OTU 2 seqs prokMSA_id:852 clone Arc.2 prokMSA_id:47871 Arc.168 1.2.1.3.2575 OTU 3 seqs prokMSA_id:831 clone BBA6 prokMSA_id:23119 crenarchaeote MERTZ_2CM_269 prokMSA_id:31024 crenarchaeote MERTZ_21CM_232 1.2.1.3.2577 OTU 2 seqs prokMSA_id:849 clone pUWA2 prokMSA_id:53714 clone A14 1.2.1.3.2580 OTU 10 seqs prokMSA_id:829 clone vadinDC69 prokMSA_id:835 clone pGrfC26 prokMSA_id:42699 WSB-11 AB055993 prokMSA_id:43667 62-2 prokMSA_id:45742 72-1 prokMSA_id:56717 crenarchaeote clone 44a-A1-4 prokMSA_id:81841 methanogenic clone FenO1- prokMSA_id:82394 methanogenic clone FenO- AJ548934 prokMSA_id:83224 clone AF87 AY092146 prokMSA_id:83474 clone AF9 AY092147 1.2.1.3.2581 OTU 5 seqs prokMSA_id:832 clone Arc.1 prokMSA_id:834 clone Arc.119 prokMSA_id:30652 Arc.118 prokMSA_id:42364 Arc.98 prokMSA_id:69953 Arc.119 AF005762 1.2.1.3.2617 OTU 1 seq prokMSA_id:838 clone pSL4 1.2.1.3.2618 OTU 1 seq prokMSA_id:839 clone pSL50 1.2.1.3.2627 OTU 1 seq prokMSA_id:847 clone pBRKC88 1.2.1.3.2628 OTU 1 seq prokMSA_id:848 unnamed organism 1.2.1.3.2630 OTU 1 seq prokMSA_id:68897 SAGMA-H 1.2.1.3.2634 OTU 1 seq prokMSA_id:854 clone pGrfB286 1.2.1.3.2635 OTU 1 seq prokMSA_id:43314 clone A1 1.2.1.3.2637 OTU 1 seq prokMSA_id:72965 AT_R003 1.2.1.3.2649 OTU 1 seq prokMSA_id:828 clone pBRKC86 1.2.1.3.2653 OTU 1 seq prokMSA_id:44205 clone KS60 1.2.1.3.2652 OTU 1 seq prokMSA_id:73046 GBa2r048 1.2.1.3.2654 OTU 1 seq prokMSA_id:830 clone pMC2A308 1.2.1.3.2655 OTU 1 seq prokMSA_id:833 clone Arc.22 1.2.1.4 PYB.ISLANDICUM_SUBGROUP 31 seqs 1.2.1.4.2596 OTU 1 seq prokMSA_id:872 Thermoproteus tenax 1.2.1.4.2597 OTU 1 seq prokMSA_id:877 Thermocladium modestius str. IC-125 JCM 10088 1.2.1.4.2608 OTU 17 seqs prokMSA_id:16312 Vulcanisaeta distributa strain:IC-052 AB063636 prokMSA_id:18315 Vulcanisaeta distributa strain:IC-017 AB063630 prokMSA_id:19003 Vulcanisaeta distributa strain:IC-065 AB063639 prokMSA_id:23083 Vulcanisaeta souniana strain:IC-060 AB063646 prokMSA_id:23289 Vulcanisaeta souniana strain:IC-059 prokMSA_id:23618 Vulcanisaeta distributa strain:IC-135 AB063641 prokMSA_id:27751 Vulcanisaeta distributa strain:IC-029 AB063632 prokMSA_id:30926 Vulcanisaeta distributa strain:IC-032 prokMSA_id:38823 Vulcanisaeta distributa strain:IC-051 AB063635 prokMSA_id:40703 Vulcanisaeta distributa strain:IC-124 AB063640 prokMSA_id:41394 Vulcanisaeta distributa strain:IC-019 AB063631 prokMSA_id:42441 Vulcanisaeta distributa strain:IC-058 AB063637 prokMSA_id:45499 Vulcanisaeta distributa strain:IC-030 AB063633 prokMSA_id:47601 Vulcanisaeta distributa strain:IC-140 AB063643 prokMSA_id:71811 Vulcanisaeta distributa strain:IC-141 AB063644 prokMSA_id:72845 Vulcanisaeta distributa strain:IC-064 AB063638 prokMSA_id:73455 Vulcanisaeta distributa strain:IC-136 1.2.1.4.2609 OTU 11 seqs prokMSA_id:868 Pyrobaculum islandicum str. geo3 prokMSA_id:869 Pyrobaculum aerophilum str. IM2 DSM 7523 . L07510 prokMSA_id:870 Pyrobaculum neutrophilum str. NZ1 prokMSA_id:873 Thermoproteus neutrophilus JCM 9278 prokMSA_id:20435 Pyrobaculum arsenaticum strain PZ6 AJ277124 prokMSA_id:26139 crenarchaeote pBA2 AF176346 prokMSA_id:34186 Pyrobaculum organotrophum strain:JCM 9190 prokMSA_id:44220 Pyrobaculum oguniense prokMSA_id:52477 Pyrobaculum sp. WIJ3 prokMSA_id:63979 Pyrobaculum oguniense genes homing endonuclease I-PogI and c prokMSA_id:78804 Pyrobaculum calidifontis complete 1.2.1.4.2650 OTU 1 seq prokMSA_id:16428 Caldivirga maquilingensis 1.2.1.5 PYRODICTIALES 48 seqs 1.2.1.5.1 PYR.OCCULTUM_SUBGROUP 10 seqs 1.2.1.5.1.2564 OTU 2 seqs prokMSA_id:23461 pPACMA-I prokMSA_id:23664 pPACMA-X 1.2.1.5.1.2598 OTU 1 seq prokMSA_id:880 clone pSL123 1.2.1.5.1.2600 OTU 1 seq prokMSA_id:888 clone pISA9 1.2.1.5.1.2631 OTU 1 seq prokMSA_id:17296 crenarchaeote clone SUBT-13 1.2.1.5.1.2656 OTU 5 seqs prokMSA_id:884 clone pOWA19 prokMSA_id:885 clone pOWA54 prokMSA_id:886 clone pUWA43 prokMSA_id:63629 clone pEPR153 prokMSA_id:70637 C1_R025 1.2.1.5.2 AP.PERNIX_SUBGROUP 13 seqs 1.2.1.5.2.2590 OTU 1 seq prokMSA_id:894 Aeropyrum pernix str. K1 1.2.1.5.2.2595 OTU 1 seq prokMSA_id:28917 73D 1.2.1.5.2.2607 OTU 8 seqs prokMSA_id:901 clone VAL11 prokMSA_id:902 clone VAL81 prokMSA_id:903 clone VAL20 prokMSA_id:904 clone VAL42 prokMSA_id:905 clone VAL48 prokMSA_id:906 clone VAL29 prokMSA_id:907 clone VAL18 prokMSA_id:908 clone VAL76 1.2.1.5.2.2613 OTU 1 seq prokMSA_id:900 str. JTB173 1.2.1.5.2.2633 OTU 1 seq prokMSA_id:899 clone Arc.43 1.2.1.5.2.2641 OTU 1 seq prokMSA_id:72647 Desulfurococcus sp. clone SUBT-9 1.2.1.5.3 STH.MARINUS_SUBGROUP 16 seqs 1.2.1.5.3.2560 OTU 7 seqs prokMSA_id:916 Staphylothermus marinus str. F1 DSM 3639 prokMSA_id:920 Staphylothermus achaiicus str. P8BK20S6-10-b1 prokMSA_id:56004 20a-15 clone 20a-15 AJ299156 prokMSA_id:59040 20a-25 clone 20a-25 AJ299158 prokMSA_id:59042 20a-17 clone 20a-17 AJ299157 prokMSA_id:59090 20a-3 clone 20a-3 AJ299150 prokMSA_id:59091 20a-2 clone 20a-2 AJ299149 1.2.1.5.3.2571 OTU 3 seqs prokMSA_id:922 clone Arc.4 prokMSA_id:27534 Arc.212 prokMSA_id:35833 Arc.148 1.2.1.5.3.2576 OTU 2 seqs prokMSA_id:921 Igneococcus islandicus str. Ko18 prokMSA_id:16514 Ignicoccus pacificus strain LPC33 1.2.1.5.3.2611 OTU 1 seq prokMSA_id:66762 Ignicoccus sp. Kin4-I strain Kin4-I 1.2.1.5.3.2622 OTU 1 seq prokMSA_id:917 unnamed organism 1.2.1.5.3.2623 OTU 1 seq prokMSA_id:918 clone BBA2 1.2.1.5.3.2624 OTU 1 seq prokMSA_id:919 clone pSL22 1.2.1.5.4 DCO.MOBILIS_SUBGROUP 9 seqs 1.2.1.5.4.2565 OTU 2 seqs prokMSA_id:934 clone Arc.3 prokMSA_id:935 clone Arc.75 1.2.1.5.4.2605 OTU 6 seqs prokMSA_id:929 Desulfurococcus mobilis DSM 2161 prokMSA_id:930 Desulfurococcus mobilis prokMSA_id:932 unnamed organism prokMSA_id:936 Sulfophobococcus zilligii str. K1 DSM 11193 prokMSA_id:22921 Desulfurococcaceae str. SRI-465 AF255606 prokMSA_id:23984 Desulfurococcus sp. SEA 1.2.1.5.4.2639 OTU 1 seq prokMSA_id:931 clone Arc.9 1.2.1.6 SULFOLOBUS_SUBGROUP_I 22 seqs 1.2.1.6.1 SUL.SOLFATARICUS_SUBGROUP 19 seqs 1.2.1.6.1.2561 OTU 19 seqs prokMSA_id:938 Sulfolobus solfataricus str. Ron 12/III prokMSA_id:940 Sulfolobus shibatae str. B12 DSM 5389 prokMSA_id:941 Sulfolobus solfataricus str. P1 DSM 1616 prokMSA_id:942 Sulfolobus solfataricus str. P1 IFO 15331 . D26490 prokMSA_id:54467 Sulfolobus solfataricus complete genome NC_002754 prokMSA_id:69935 Sulfolobus sp. NGB23/00 prokMSA_id:70345 Sulfolobus sp. FF5/00 prokMSA_id:71652 Sulfolobus sp. NL8/00 prokMSA_id:71769 Sulfolobus sp. MV2/99 prokMSA_id:73229 Sulfolobus sp. RC6/00 prokMSA_id:74206 Sulfolobus sp. NGB6/00 prokMSA_id:74215 Sulfolobus sp. AMP12/99 prokMSA_id:92332 Sulfolobus sp. C51 AY247901 prokMSA_id:92401 Sulfolobus sp. B6A AY247897 prokMSA_id:92457 Sulfolobus sp. M14A AY247895 prokMSA_id:92579 Sulfolobus sp. N15B AY247900 prokMSA_id:92813 Sulfolobus sp. I2 AY247893 prokMSA_id:92884 Sulfolobus sp. I7 AY247894 prokMSA_id:93061 Sulfolobus sp. N15A AY247899 1.2.1.6.2 SUL.METALLICUS_SUBGROUP 3 seqs 1.2.1.6.2.2572 OTU 3 seqs prokMSA_id:945 Sulfolobus sp. str. LM prokMSA_id:946 Sulfolobus metallicus DSM 6482 prokMSA_id:947 Sulfolobus metallicus DSM 6482 1.2.1.7 SULFOLOBUS_SUBGROUP_II 18 seqs 1.2.1.7.1 SUL.ACIDOCALDARIUS_SUBGROUP 6 seqs 1.2.1.7.1.2570 OTU 6 seqs prokMSA_id:950 Sulfolobus "thuringiensis" str. Ron 12/I. X90485 prokMSA_id:951 Sulfolobus acidocaldarius str. 98-3 ATCC 33909 prokMSA_id:952 Sulfolobus acidocaldarius. U05018 prokMSA_id:953 Sulfolobus solfataricus str. P1 DSM 1616 prokMSA_id:18034 Sulfolobus sp. MVSoil6/SC1 prokMSA_id:71832 Sulfolobus sp. MVSoil3/SC2 1.2.1.7.2 SL.AZORICUS_SUBGROUP 3 seqs 1.2.1.7.2.2610 OTU 3 seqs prokMSA_id:954 Sulfolobus sp. str. B6/2 prokMSA_id:955 Stygiolobus azoricus str. FC6 DSM 6296 prokMSA_id:956 Stygiolobus azoricus str. FC6 DSM 6296 1.2.1.7.3 SFR.OHWAKUENSIS_SUBGROUP 9 seqs 1.2.1.7.3.2599 OTU 1 seq prokMSA_id:959 clone FFSB5 1.2.1.7.3.2604 OTU 1 seq prokMSA_id:963 clone MS1 1.2.1.7.3.2614 OTU 4 seqs prokMSA_id:958 Sulfurisphaera ohwakuensis str. TA-1 IFO 15161 prokMSA_id:964 Sulfolobus yangmingensis str. YM prokMSA_id:46167 Sulfolobus tokodaii complete genome prokMSA_id:54912 Sulfolobus sp. and 23S complete and 1.2.1.7.3.2615 OTU 3 seqs prokMSA_id:29928 thermal soil clone YNPFFA30 prokMSA_id:30893 thermal soil clone YNPFFA52 prokMSA_id:35548 thermal soil clone YNPFFA2 1.2.1.8 ACIDIANUS_SUBGROUP 10 seqs 1.2.1.8.2 ADI.BRIERLEYI_SUBGROUP 4 seqs 1.2.1.8.2.2647 OTU 4 seqs prokMSA_id:973 Acidianus brierleyi prokMSA_id:974 Acidianus brierleyi DSM 1651 prokMSA_id:975 Acidianus brierleyi IFO 15269 prokMSA_id:19329 Acidianus tengchongensis 1.2.1.8.3 MTS.SEDULA_SUBGROUP 6 seqs 1.2.1.8.3.2567 OTU 6 seqs prokMSA_id:977 Metallosphaera sedula prokMSA_id:978 Metallosphaera sedula IFO 15509 prokMSA_id:979 Metallosphaera sedula DSM 5348 prokMSA_id:980 Metallosphaera prunae str. Ron 12/II DSM 10039 prokMSA_id:981 Metallosphaera J1 str. J1 prokMSA_id:41957 Metallosphaera sp. complete cds 1.2.2 NON-THERMOPHILIC_CRENARCHAEOTA 117 seqs 1.2.2.1 MARINE_CRENARCHAEOTA 115 seqs 1.2.2.1.2 ENVIRONMENTAL_CLONE_PVA2_SUBGROUP 1 seq 1.2.2.1.2.2640 OTU 1 seq prokMSA_id:989 Pacific Ocean station 49 500m depth clone 1.2.2.1.4 ENVIRONMENTAL_CLONE_4B7_SUBGROUP 114 seqs 1.2.2.1.4.2563 OTU 1 seq prokMSA_id:50209 pPCA4.4 1.2.2.1.4.2574 OTU 3 seqs prokMSA_id:1017 clone FFSB6 prokMSA_id:19586 Archaea sp. clone FFSA2 prokMSA_id:41469 Archaea sp. clone FFSA1 1.2.2.1.4.2579 OTU 2 seqs prokMSA_id:1007 unnamed organism prokMSA_id:1008 unnamed organism 1.2.2.1.4.2582 OTU 1 seq prokMSA_id:1127 clone PM8 1.2.2.1.4.2583 OTU 1 seq prokMSA_id:1128 clone PM23 1.2.2.1.4.2584 OTU 2 seqs prokMSA_id:39230 crenarchaeote clone SUBT-14 AF361211 prokMSA_id:58501 clone:pHAuA-C 1.2.2.1.4.2585 OTU 20 seqs prokMSA_id:1050 unnamed organism prokMSA_id:1056 unnamed organism prokMSA_id:1099 clone pMC2A1 prokMSA_id:1100 clone pMC1A11 prokMSA_id:1101 clone pMC1A103 prokMSA_id:1129 clone C6 prokMSA_id:1130 clone C11 prokMSA_id:1131 clone C20 prokMSA_id:1133 clone C35 prokMSA_id:1134 clone C46 prokMSA_id:1135 clone C48 prokMSA_id:28779 marine archaeal group 1 crenarchaeote clone ST-12K13A prokMSA_id:28911 marine archaeal group 1 crenarchaeote clone ST-3K4A prokMSA_id:33041 crenarchaeote 19H08 prokMSA_id:38520 crenarchaeote 15G10 ; and glutamate semialdehyde aminotransf prokMSA_id:39914 SAGMA-1 prokMSA_id:70288 CS_R008 prokMSA_id:70553 crenarchaeote 74A4 genomic prokMSA_id:73495 C1_R010 prokMSA_id:75293 crenarchaeote clone Gitt-GR-27 1.2.2.1.4.2586 OTU 1 seq prokMSA_id:1132 clone C33 1.2.2.1.4.2587 OTU 9 seqs prokMSA_id:1093 clone SB95-57 prokMSA_id:1102 clone pIVWA108 prokMSA_id:1103 clone pIVWA1. AB019727 prokMSA_id:1105 clone pIVWA11 prokMSA_id:1106 clone pIVWA2 prokMSA_id:1107 clone pIVWA3 prokMSA_id:1108 clone M17. U68604 prokMSA_id:34469 marine archaeal group 1 crenarchaeote clone ST-12K2A prokMSA_id:63634 clone pEPR853 AF526983 1.2.2.1.4.2588 OTU 3 seqs prokMSA_id:1005 clone 4B7 prokMSA_id:1126 clone PM7 prokMSA_id:46043 crenarchaeote 4B7 40 kb genomic fragment 1.2.2.1.4.2589 OTU 6 seqs prokMSA_id:1140 clone SCA1150 prokMSA_id:1146 clone SCA1173 prokMSA_id:25116 SAGMA-2 prokMSA_id:47778 SAGMA-W prokMSA_id:75056 crenarchaeote clone Gitt-GR-39 prokMSA_id:76611 crenarchaeote clone Gitt-GR-31 1.2.2.1.4.2591 OTU 10 seqs prokMSA_id:1111 clone pGrfA4 prokMSA_id:1142 clone SCA1154 prokMSA_id:1143 clone SCA1158 prokMSA_id:1145 clone SCA1170 prokMSA_id:41594 crenarchaeote TRC23-10 prokMSA_id:45484 crenarchaeote TRC132-3 prokMSA_id:74966 crenarchaeote clone Gitt-GR-5 prokMSA_id:75314 crenarchaeote clone Gitt-GR-74 prokMSA_id:76642 crenarchaeote clone Gitt-GR-47 prokMSA_id:83832 crenarchaeote clone 54D9 1.2.2.1.4.2593 OTU 5 seqs prokMSA_id:19543 Crenarchaeote symbiont of Axinella damicornis prokMSA_id:31020 Crenarchaeote symbiont of Axinella sp prokMSA_id:36985 Crenarchaeote symbiont of Axinella verrucosa prokMSA_id:69323 Cenarchaeum symbiosum strain A hypothetical protein 01 compl prokMSA_id:69639 Cenarchaeum symbiosum strain B histone H1 binding protein hc 1.2.2.1.4.2594 OTU 2 seqs prokMSA_id:1051 unnamed organism prokMSA_id:1055 unnamed organism 1.2.2.1.4.2601 OTU 1 seq prokMSA_id:1052 unnamed organism 1.2.2.1.4.2602 OTU 1 seq prokMSA_id:70916 crenarchaeote isolate DOURO3 1.2.2.1.4.2606 OTU 12 seqs prokMSA_id:1011 clone FFSB1 prokMSA_id:1014 clone FFSB2 prokMSA_id:19206 Front Range soil crenarchaeote FRD38 prokMSA_id:19287 crenarchaeote clone PSSBEM10-6 prokMSA_id:30300 Front Range soil crenarchaeote FRC1x2 prokMSA_id:32046 Front Range soil crenarchaeote FRC33A prokMSA_id:35162 crenarchaeote clone PSPIHH28-2 prokMSA_id:76043 crenarchaeote clone JG36-GR-140 prokMSA_id:84196 crenarchaeote clone GRU11 prokMSA_id:84510 crenarchaeote clone GRU10 prokMSA_id:84669 crenarchaeote clone GRU19 prokMSA_id:85692 crenarchaeote clone S248-7 1.2.2.1.4.2612 OTU 1 seq prokMSA_id:31165 SAGMA-8 1.2.2.1.4.2616 OTU 1 seq prokMSA_id:1029 Cenarchaeum symbiosum 1.2.2.1.4.2619 OTU 1 seq prokMSA_id:1006 clone pSL12 1.2.2.1.4.2620 OTU 1 seq prokMSA_id:1009 clone ACE-6 1.2.2.1.4.2621 OTU 8 seqs prokMSA_id:16793 SAGMA-Z AB050231 prokMSA_id:18486 SAGMA-D prokMSA_id:30678 SAGMA-X prokMSA_id:46479 SAGMA-11 prokMSA_id:49412 SAGMA-10 prokMSA_id:73503 clone SRS62DAR03 prokMSA_id:96490 clone EA1G9 AY186065 prokMSA_id:97287 clone EA1F4 AY186062 1.2.2.1.4.2625 OTU 15 seqs prokMSA_id:1139 clone SCA1145 prokMSA_id:1141 clone SCA1151 prokMSA_id:1144 clone SCA1166 prokMSA_id:1147 clone SCA1175 prokMSA_id:24479 crenarchaeote TRC23-38 prokMSA_id:26266 crenarchaeote TRC132-7 prokMSA_id:30247 crenarchaeote TRC132-8 prokMSA_id:32035 SAGMA-P prokMSA_id:32329 crenarchaeote TRC23-30 prokMSA_id:39571 crenarchaeote TRC23-31 prokMSA_id:43271 crenarchaeote TRC23-28 prokMSA_id:46609 crenarchaeote TRC132-9 prokMSA_id:51909 crenarchaeote TRC132-6 prokMSA_id:71074 crenarchaeote 34 kb genomic fragment prokMSA_id:76092 crenarchaeote clone Gitt-GR-78 1.2.2.1.4.2626 OTU 1 seq prokMSA_id:1010 VC2.1 Arc31 complete 1.2.2.1.4.2629 OTU 1 seq prokMSA_id:1019 clone pMC2A36 1.2.2.1.4.2638 OTU 1 seq prokMSA_id:22234 Front Range soil crenarchaeote FRA27 1.2.2.1.4.2643 OTU 1 seq prokMSA_id:20712 33-P38A00 1.2.2.1.4.2645 OTU 1 seq prokMSA_id:1148 clone SCA11 1.2.2.1.4.2646 OTU 1 seq prokMSA_id:50748 SAGMA-A 1.2.2.1.4.2651 OTU 1 seq prokMSA_id:16284 C1_R043 1.2.2.2 ENVIRONMENTAL_CLONE_PJP89 2 seqs 1.2.2.2.2603 OTU 1 seq prokMSA_id:1171 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.2.2.2644 OTU 1 seq prokMSA_id:38903 Arc.201 1.2.3 ENVIRONMENTAL_CLONE_PJP27_SUBGROUP 4 seqs 1.2.3.2562 OTU 2 seqs prokMSA_id:1173 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:49873 Korarchaeota SRI-306 1.2.3.2569 OTU 2 seqs prokMSA_id:1172 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:51224 korarchaeote pBA5 2 BACTERIA 25117 seqs 2.1 THERMOPHILIC_OXYGEN_REDUCERS 78 seqs 2.1.220 OTU 5 seqs prokMSA_id:1177 clone OPB13 prokMSA_id:1182 clone env.OPS 1 prokMSA_id:1183 clone env.OPS 4 prokMSA_id:1184 clone env.OPS 7 prokMSA_id:60550 Aquificales YNP-SS1 2.1.256 OTU 1 seq prokMSA_id:32720 Aquificales clone 2.1.381 OTU 1 seq prokMSA_id:32287 Hydrogenothermus marinus 2.1.445 OTU 28 seqs prokMSA_id:1174 Thermocrinis ruber str. OC 1/4. AJ005640 prokMSA_id:1199 Calderobacterium hydrogenophilum str. Z-829 . Z30242 prokMSA_id:1207 clone OPS132 prokMSA_id:1209 Hydrogenobacter thermophilus str. T3. Z30189 prokMSA_id:1210 Hydrogenobacter subterranea str. HGP1 prokMSA_id:1211 str. EM 17 prokMSA_id:1213 clone OPS165. AF027105 prokMSA_id:16683 Hydrogenobacter sp. MV4L2B strain MV4L2B prokMSA_id:18011 Hydrogenobacter sp. PA14 strain PA16 prokMSA_id:21804 Thermocrinis sp. P2L2B strain P2L2B prokMSA_id:22567 Thermocrinis albus strain HI 11/12 prokMSA_id:23410 Thermocrinis sp. clone SUBT-1 prokMSA_id:25858 Aquificales str. SS5H1 AF301908 prokMSA_id:31233 Hydrogenobacter sp. GV8L3A strain GV8L3A prokMSA_id:33986 Hydrogenobacter sp. BB4L1B strain BB4L1B prokMSA_id:35025 Hydrogenobacter sp. PZ2AL1B strain PZ2AL1B prokMSA_id:36754 Thermocrinis sp. UZ23L3A strain UZ23L3A prokMSA_id:38669 Thermocrinis sp. H7L1B strain H7L1B prokMSA_id:38815 Aquificales str. SRI-48 prokMSA_id:39236 Hydrogenobacter sp. IT-7242 prokMSA_id:46163 Hydrogenobacter sp. UZ27L2A strain UZ27L2A prokMSA_id:51871 Aquificales pIce1 prokMSA_id:52320 Thermocrinis sp. G3L1B strain G3L1B prokMSA_id:60606 clone R57 prokMSA_id:60621 clone Y04 prokMSA_id:60624 clone Sed01 prokMSA_id:67859 Bacillus sp. clone DGG36 prokMSA_id:70459 Aquificales clone pKA 2.1.653 OTU 3 seqs prokMSA_id:1176 Hydrogenobacter acidophilus str. 3H-1 prokMSA_id:26906 clone B5 prokMSA_id:43828 Hydrogenobaculum sp. NOR3L3B strain NOR3L3B 2.1.715 OTU 1 seq prokMSA_id:1215 clone env.OPS 6 2.1.737 OTU 16 seqs prokMSA_id:1186 clone env.OPS 14 prokMSA_id:17781 Aquificales clone SM2G01 prokMSA_id:25727 Aquificales clone SM2G07 prokMSA_id:27456 Aquificales clone SM2G04 prokMSA_id:38487 Aquificales clone SM1B11 prokMSA_id:42953 Aquificales pBB prokMSA_id:49376 Aquificales clone SM1G03 prokMSA_id:56574 Aquificales clone:YUM915 AB073130 prokMSA_id:67472 Aquificales clone:YE3152 prokMSA_id:67473 Aquificales clone:YE2101 AB073125 prokMSA_id:67474 Aquificales clone:YE2921 prokMSA_id:67475 Aquificales clone:YE111 AB073123 prokMSA_id:67476 Aquificales clone:YE12 prokMSA_id:67477 Aquificales clone:YE31422 prokMSA_id:71370 Aquificaceae Az-Fu1 AF528192 prokMSA_id:72765 Aquificales clone pTthxG5 2.1.751 OTU 1 seq prokMSA_id:79191 Coprothermobacter sp. Dex80-3 strain Dex80-3 2.1.762 OTU 5 seqs prokMSA_id:1189 VC2.1 bac39 complete prokMSA_id:1194 VC2.1 Bac10 complete prokMSA_id:1195 VC2.1 Bac11 complete prokMSA_id:1196 VC2.1 Bac27 complete prokMSA_id:1198 VC2.1 Bac33 complete 2.1.82 OTU 17 seqs prokMSA_id:1187 Aquifex pyrophilus prokMSA_id:30117 Aquificales str. CIR3017HO90 prokMSA_id:32822 Aquifex sp. Gri14L3B strain Gri14L3B prokMSA_id:38306 Aquifex aeolicus section 83 of 109 of the complete genome AE prokMSA_id:39217 Aquifex aeolicus AJ309733 prokMSA_id:39591 Aquifex sp. Ob6 strain Ob6 AJ320224 prokMSA_id:51070 Aquifex aeolicus complete genome NC_000918 prokMSA_id:51605 Aquifex aeolicus section 41 of 109 of the complete genome prokMSA_id:53595 Aquifex aeolicus complete genome AE000657 prokMSA_id:82720 Aquifex sp. Aq-365-85-NO3 prokMSA_id:82818 Aquifex sp. Aq-1-85-NO3 prokMSA_id:83172 Aquifex sp. Aq-365-85-1%O2 prokMSA_id:83524 Aquifex sp. Aq-1-70-1%O2 prokMSA_id:84742 Aquifex sp. Aq-1-85-1%O2 prokMSA_id:85552 Aquifex sp. Aq-365-70-1%O2 prokMSA_id:86227 Aquifex sp. Aq-I-70-1%O2 AB095175 prokMSA_id:86369 Aquifex sp. Aq-S-70-1%O2 AB095176 2.2 THERMOTOGALES 43 seqs 2.2.1 PETROTOGA_GROUP 4 seqs 2.2.1.809 OTU 4 seqs prokMSA_id:1216 Petrotoga mobilis str. SJ95 DSM 10674 prokMSA_id:17828 Petrotoga siberica strain SL25T prokMSA_id:51557 Petrotoga olearia strain SL24T prokMSA_id:69492 Petrotoga mexicana 2.2.2 GEOTOGA_GROUP 4 seqs 2.2.2.238 OTU 1 seq prokMSA_id:79381 Thermotogales str. Dex60-32 strain Dex60-32 2.2.2.56 OTU 2 seqs prokMSA_id:1218 Geotoga petraea str. T5 ATCC 51226 prokMSA_id:1219 Geotoga subterranea str. CC-1 ATCC 51225 2.2.2.729 OTU 1 seq prokMSA_id:1220 str. MV1075 2.2.3 FERVIDOBACTERIUM_GROUP 4 seqs 2.2.3.732 OTU 1 seq prokMSA_id:1223 Caldotoga fontana str. B4 2.2.3.735 OTU 1 seq prokMSA_id:1227 Fervidobacterium gondwanense str. AB39 ACM 5017 2.2.3.780 OTU 2 seqs prokMSA_id:18702 Fervidobacterium islandicum strain AW-1 prokMSA_id:32030 Thermotogales sp. SRI-251 2.2.4 THERMOSIPHO_GROUP 8 seqs 2.2.4.346 OTU 5 seqs prokMSA_id:1231 Thermosipho IHB1 str. IHB1 prokMSA_id:40837 Thermosipho sp. DSM 13256 prokMSA_id:42520 Thermosipho sp. TBA5 prokMSA_id:50206 Thermosipho sp. DSM 6568 strain DSM 6568 RI19.B2 prokMSA_id:89466 Thermosipho sp. FD1 AB107770 2.2.4.51 OTU 1 seq prokMSA_id:72302 Thermosipho sp. MV1063 2.2.4.783 OTU 1 seq prokMSA_id:1230 Thermosipho melanesiensis str. BI429 CIP 104789 2.2.4.819 OTU 1 seq prokMSA_id:83498 Thermosipho ferriphilus 2.2.5 THERMOTOGA_GROUP 5 seqs 2.2.5.587 OTU 3 seqs prokMSA_id:1233 Thermotoga subterranea str. SL1 DSM 9912 prokMSA_id:1234 Thermotoga elfii str. SERB 6459 DSM 9442 prokMSA_id:62474 Thermotoga sp. TMO complete 2.2.5.804 OTU 1 seq prokMSA_id:1235 Thermotoga hypogea SEBR 7054 2.2.5.971 OTU 1 seq prokMSA_id:38910 Thermotoga thermarum 2.2.6 TT.MARITIMA_GROUP 14 seqs 2.2.6.573 OTU 13 seqs prokMSA_id:1236 Thermotoga maritima str. MSB8 DSM 3109 . M21774 prokMSA_id:24284 Thermotoga maritima strain FJSS3-B.1 prokMSA_id:27647 Thermotoga sp. RQ2 strain RQ2 AJ401019 prokMSA_id:32773 Thermotoga neapolitana strain LA10 prokMSA_id:35101 Thermotoga neapolitana strain NES AJ401016 prokMSA_id:40929 Thermotoga sp. RQ7 strain RQ7 AJ401023 prokMSA_id:41353 Thermotoga neapolitana prokMSA_id:46327 Thermotoga sp. RKU-10 isolate:RKU-10 prokMSA_id:48407 Thermotoga sp. RKU-1 prokMSA_id:49474 Thermotoga maritima complete genome NC_000853 prokMSA_id:50916 Thermotoga sp. SG1 strain SG1 AJ401022 prokMSA_id:70547 Thermotoga neapolitana strain LA4 prokMSA_id:72408 Thermotoga maritima strain SL7 AJ401017 2.2.6.826 OTU 1 seq prokMSA_id:1240 clone OPB14 2.2.7 ENVIRONMENTAL_CLONE_OPB7_GROUP 4 seqs 2.2.7.828 OTU 1 seq prokMSA_id:1241 str. EM 3 2.2.7.830 OTU 2 seqs prokMSA_id:1243 clone OPB7 prokMSA_id:35305 Thermotogales sp. SRI-15 AF255594 2.2.7.831 OTU 1 seq prokMSA_id:1248 clone TUG22 2.3 CTM.PROTEOLYTICUS_GROUP 2 seqs 2.3.848 OTU 1 seq prokMSA_id:1249 Coprothermobacter platensis str. 3R DSM 11748 2.3.880 OTU 1 seq prokMSA_id:1250 Coprothermobacter proteolyticus str. BT ATCC 35245 2.4 STRAIN.EM_19 2 seqs 2.4.41 OTU 2 seqs prokMSA_id:1251 str. EM 19 prokMSA_id:16693 clone BH81 complete 2.5 ENVIRONMENTAL_CLONE_OPB45_GROUP 19 seqs 2.5.230 OTU 1 seq prokMSA_id:1260 Desulfurobacterium thermolithotrophum str. BSA 2.5.48 OTU 1 seq prokMSA_id:52699 Thermodesulfobacterium sp. CIR29812 2.5.515 OTU 1 seq prokMSA_id:65699 soil clone S079 2.5.524 OTU 2 seqs prokMSA_id:1253 clone OPS67 prokMSA_id:1254 clone OPS68 2.5.62 OTU 3 seqs prokMSA_id:1259 Thermodesulfobacterium hveragerdicum str. JSP prokMSA_id:38674 Thermodesulfobacterium commune DSM 2178 AF418169 prokMSA_id:70598 Thermodesulfobacterium thermophilum strain DSM 1276 2.5.667 OTU 10 seqs prokMSA_id:1252 clone OPB45 prokMSA_id:1256 clone OPT4. AF027093 prokMSA_id:1257 clone OPT53. AF027094 prokMSA_id:1258 clone OPS7 prokMSA_id:27454 Geothermobacterium ferrireducens strain FW-1a prokMSA_id:39066 Thermodesulfotobacterium sp. SRI-93 prokMSA_id:42031 Thermodesulfobacterium hydrogeniphilum prokMSA_id:43680 Thermodesulfobacterium sp. clone BSpN50 complete prokMSA_id:67861 Thermodesulfobacteriaceae clone DGG19 prokMSA_id:72666 Thermodesulfotobacterium sp. SRI-27 2.5.899 OTU 1 seq prokMSA_id:1255 clone ORGANIC-1 2.7 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES 228 seqs 2.7.1 CHLOROFLEXUS_SUBDIVISION 95 seqs 2.7.1.1 CHLOROFLEXUS_ASSEMBLAGE 21 seqs 2.7.1.1.1041 OTU 1 seq prokMSA_id:85874 clone FBP471 2.7.1.1.1048 OTU 1 seq prokMSA_id:70526 clone SBR2022 2.7.1.1.119 OTU 1 seq prokMSA_id:38489 Green non-sulfur B1-5 2.7.1.1.202 OTU 1 seq prokMSA_id:72831 Chloroflexus sp. 396-1 strain 396-1 2.7.1.1.229 OTU 2 seqs prokMSA_id:21812 Chloroflexaceae group clone P4-E04 prokMSA_id:47113 Chloroflexaceae group clone P5-E06 2.7.1.1.235 OTU 1 seq prokMSA_id:1266 Herpetosiphon geysericola ATCC 23076 2.7.1.1.236 OTU 1 seq prokMSA_id:20892 Sphaerobacter thermophilus strain DSM 20745T 2.7.1.1.299 OTU 1 seq prokMSA_id:1282 Thermomicrobium roseum ATCC 27502 2.7.1.1.635 OTU 1 seq prokMSA_id:28650 clone HTH4 2.7.1.1.641 OTU 1 seq prokMSA_id:72494 Chloroflexus aggregans strain DSM 9486 2.7.1.1.718 OTU 2 seqs prokMSA_id:34391 Eikelboom 1851 Ben52 prokMSA_id:63978 clone:R6-06 AB087523 2.7.1.1.818 OTU 2 seqs prokMSA_id:37755 Chloroflexaceae group clone P5-F08 prokMSA_id:43935 Chloroflexaceae group clone P6-D01 2.7.1.1.942 OTU 4 seqs prokMSA_id:56710 clone R08 AF407685 prokMSA_id:60577 clone B55 prokMSA_id:60594 clone G32 prokMSA_id:71275 Chloroflexus aurantiacus strain DSM 637 AJ308501 2.7.1.1.99 VARIOUS 2 seqs 2.7.1.2 ENVIRONMENTAL_CLONE_T78_GROUP 61 seqs 2.7.1.2.1022 OTU 2 seqs prokMSA_id:35554 green nonsulfur MERTZ_0CM_325 prokMSA_id:46319 green nonsulfur MERTZ_2CM_230 2.7.1.2.1038 OTU 1 seq prokMSA_id:29524 green nonsulfur MERTZ_21CM_197 2.7.1.2.1051 OTU 1 seq prokMSA_id:76852 clone JG37-AG-138 2.7.1.2.1061 OTU 1 seq prokMSA_id:50483 green nonsulfur MERTZ_21CM_275 2.7.1.2.109 OTU 1 seq prokMSA_id:66908 clone SHD-194 2.7.1.2.180 OTU 1 seq prokMSA_id:69766 clone SHA-31 2.7.1.2.183 OTU 1 seq prokMSA_id:65480 SHD-58 2.7.1.2.27 OTU 1 seq prokMSA_id:22922 SHA-21 2.7.1.2.284 OTU 1 seq prokMSA_id:38885 green non-sulfur TIHP302-40 2.7.1.2.320 OTU 1 seq prokMSA_id:1293 clone OPT90 2.7.1.2.334 OTU 1 seq prokMSA_id:1298 str. BD3-16 2.7.1.2.432 OTU 2 seqs prokMSA_id:23428 sludge H39 prokMSA_id:36737 sludge S41 2.7.1.2.448 OTU 1 seq prokMSA_id:39542 clone Car120rc 2.7.1.2.537 OTU 24 seqs prokMSA_id:2708 str. SBR1029. X84472 prokMSA_id:2726 unnamed organism. X84483 prokMSA_id:2739 str. SBR1064. X84498 prokMSA_id:17004 soil clone S002 AY037556 prokMSA_id:19034 soil clone S111 AY037625 prokMSA_id:20488 freshwater LCK-51 AF107330 prokMSA_id:21638 soil clone 1028-2 AF423206 prokMSA_id:22845 sludge S16 prokMSA_id:40747 soil clone S054 AY037587 prokMSA_id:48198 soil clone S003 AY037557 prokMSA_id:67258 clone F13.34 prokMSA_id:67292 clone F10.31 prokMSA_id:67536 sludge H1 prokMSA_id:67537 sludge A30 AF234698 prokMSA_id:67538 sludge H19 prokMSA_id:67539 sludge A11b prokMSA_id:70551 soil clone 746-2 prokMSA_id:71187 soil clone 666-2 prokMSA_id:71675 clone SBR1029 prokMSA_id:72088 soil clone 572-2 prokMSA_id:72308 soil clone 838-2 prokMSA_id:73823 clone SBR1064 prokMSA_id:86049 Bacteroidetes clone BB-2-F8R AY214804 prokMSA_id:93900 clone P8-GEN-27 AY361935 2.7.1.2.634 OTU 2 seqs prokMSA_id:49130 green nonsulfur MERTZ_21CM_278 prokMSA_id:52047 green nonsulfur MERTZ_2CM_18 2.7.1.2.693 OTU 2 seqs prokMSA_id:37891 Crater Lake CL500-86 prokMSA_id:51154 Crater Lake CL500-11 AF316759 2.7.1.2.695 OTU 5 seqs prokMSA_id:1285 clone OPB65 prokMSA_id:1297 clone env.OPS 12 prokMSA_id:18359 green nonsulfur clone SM2G02 prokMSA_id:52019 green nonsulfur clone SM2H10 prokMSA_id:74684 green nonsulfur clone SM1B12 2.7.1.2.765 OTU 1 seq prokMSA_id:65481 SHD-71 2.7.1.2.767 OTU 1 seq prokMSA_id:65482 SHD-197 2.7.1.2.788 OTU 5 seqs prokMSA_id:1288 clone PENDANT-37 prokMSA_id:23867 green nonsulfur MERTZ_2CM_159 prokMSA_id:26191 green nonsulfur MERTZ_21CM_236 prokMSA_id:36235 green nonsulfur MERTZ_21CM_133 prokMSA_id:56086 clone OB3_58 2.7.1.2.827 OTU 1 seq prokMSA_id:22225 GR/GS-296.II.265 clone GR/GS-296.II.265 2.7.1.2.905 OTU 2 seqs prokMSA_id:1295 clone GCA112 prokMSA_id:1296 clone GCA004 2.7.1.2.927 OTU 1 seq prokMSA_id:72863 green non-sulfur clone P. palm C 37 2.7.1.2.983 OTU 2 seqs prokMSA_id:1287 clone SJA-15 prokMSA_id:52017 SHA-3 2.7.1.3 ENVIRONMENTAL_CLONE_OPB92_GROUP 13 seqs 2.7.1.3.1070 OTU 1 seq prokMSA_id:1304 clone LGd2 2.7.1.3.1072 OTU 1 seq prokMSA_id:1305 clone LGd6 2.7.1.3.1075 OTU 1 seq prokMSA_id:1306 clone LGd5 2.7.1.3.1076 OTU 1 seq prokMSA_id:1307 clone LGd10 2.7.1.3.1080 OTU 3 seqs prokMSA_id:1308 clone NTd42 prokMSA_id:1312 str. from Obsidian Pool hot spring Yellowstone National Park prokMSA_id:40604 candidate division OP11 clone SM1F02 2.7.1.3.12 OTU 1 seq prokMSA_id:1315 clone LGd9 2.7.1.3.171 OTU 2 seqs prokMSA_id:1302 clone LGd1 prokMSA_id:1303 clone LGd15 2.7.1.3.214 OTU 2 seqs prokMSA_id:1310 clone OPB92 prokMSA_id:28223 candidate division OP11 clone SM1E10 2.7.1.3.5 OTU 1 seq prokMSA_id:1309 clone OPS128 2.7.2 DEINOCOCCUS-THERMUS_SUBDIVISION 133 seqs 2.7.2.1 THERMUS_GROUP 116 seqs 2.7.2.1.1 T.THERMOPHILUS_SUBGROUP 83 seqs 2.7.2.1.1.178 OTU 1 seq prokMSA_id:67904 Thermus sp. C4 2.7.2.1.1.193 OTU 2 seqs prokMSA_id:20463 Marinothermus profundus strain 506T prokMSA_id:85579 Oceanothermus sp. St55B 2.7.2.1.1.753 OTU 3 seqs prokMSA_id:45920 Thermus oshimai strain SPS-17T prokMSA_id:46453 Thermus sp. T2 prokMSA_id:60595 clone G24 2.7.2.1.1.886 OTU 77 seqs prokMSA_id:1316 Thermus thermophilus str. HB27. L09659 prokMSA_id:1317 Thermus sp. str. YSPID A.1 prokMSA_id:1318 clone OPB19 prokMSA_id:1319 clone OPB31 prokMSA_id:1320 clone OPB32 prokMSA_id:1324 clone env.OPS 15 prokMSA_id:1325 Thermus sp. str. ZHGIB A.4. L10071 prokMSA_id:1326 Thermus thermophilus str. HB-8 ATCC 27634 prokMSA_id:1328 Thermus sp. str. Fiji 3A.1 prokMSA_id:1331 Thermus sp. str. YS38. Z15062 prokMSA_id:1333 Thermus scotoductus str. SE-1 DSM 8553 prokMSA_id:1334 Thermus sp. str. NMX2 A.1 prokMSA_id:1335 Thermus SA-01 str. SA-01 prokMSA_id:1337 Thermus sp. str. HS A.1 prokMSA_id:1338 Thermus sp. str. TMY1. AB020888 prokMSA_id:1344 Thermus flavus str. AT-62. L09660 prokMSA_id:1345 Thermus aquaticus str. YT-1 prokMSA_id:1348 Thermus sp. str. ZHGI A.1. L09664 prokMSA_id:1349 Thermus thermophilus str. HB-8 prokMSA_id:1350 Thermus H21.73.f prokMSA_id:1355 Thermus sp. str. ZFI A.2. L09662 prokMSA_id:1356 Thermus sp. str. ac-1 prokMSA_id:1357 Thermus sp. str. ac-7 prokMSA_id:1358 Thermus sp. str. ViI7 prokMSA_id:16358 AT425_EubC9 prokMSA_id:17962 Thermus sp. SRI-248 prokMSA_id:18463 Thermus igniterrae strain RF-4T Y18406 prokMSA_id:24092 Thermus kawarayuensis prokMSA_id:25836 Thermus sp. SRI-96 prokMSA_id:26144 Thermus scotoductus strain ITI-252T prokMSA_id:27993 Thermus sp. NTU-024 prokMSA_id:29817 Thermus/Deinococcus group clone SM1A01 prokMSA_id:30085 Thermus brockianus strain 15038T Y18409 prokMSA_id:33149 Thermus igniterrae strain HN1-8 Y18407 prokMSA_id:35173 Thermus thermophilus strain CS prokMSA_id:37306 Thermus thermophilus strain X6 prokMSA_id:39025 Thermus antranikianus strain HN3-7T prokMSA_id:40690 Thermus thermophilus strain CT1 prokMSA_id:41572 Thermus rehai prokMSA_id:45737 Thermus sp. IT-7254 prokMSA_id:47782 Thermus igniterrae strain GE-2 Y18408 prokMSA_id:53657 Thermus sp. HR13 prokMSA_id:55685 Thermus sp. G70-06 AF407738 prokMSA_id:55806 Thermus sp. G70-05 AF407737 prokMSA_id:60555 Thermus sp. Y55-11 prokMSA_id:60556 Thermus sp. Y55-12 AF407748 prokMSA_id:60557 Thermus sp. Y55-10 AF407746 prokMSA_id:60558 Thermus sp. Y55-09 AF407745 prokMSA_id:60559 Thermus sp. Y55-08 AF407744 prokMSA_id:60560 Thermus sp. Y55-07 AF407743 prokMSA_id:60561 Thermus sp. B70-05 prokMSA_id:60562 Thermus sp. B70-04 AF407741 prokMSA_id:60563 Thermus sp. G70-08 AF407740 prokMSA_id:60564 Thermus sp. G70-07 AF407739 prokMSA_id:60565 Thermus sp. R70-07 AF407736 prokMSA_id:60566 Thermus sp. R70-06 AF407735 prokMSA_id:60567 Thermus sp. Y70-07 AF407734 prokMSA_id:60568 Thermus sp. Y70-06 AF407733 prokMSA_id:60569 Thermus sp. Y70-05 AF407732 prokMSA_id:60605 clone R58 prokMSA_id:60613 clone Y90 prokMSA_id:60614 clone Y88 AF407682 prokMSA_id:60615 clone Y71 prokMSA_id:60620 clone Y10 prokMSA_id:60622 clone Y03 prokMSA_id:63588 Thermus sp. RH-1514 prokMSA_id:63589 Thermus sp. RH-1214 prokMSA_id:63592 Thermus sp. RH-914 prokMSA_id:67864 Thermus sp. clone DFQ34 prokMSA_id:67865 Thermus sp. clone DFQ28 prokMSA_id:67866 Thermus sp. clone DFQ37 prokMSA_id:67868 Thermus sp. clone DFQ6 prokMSA_id:71171 Thermus sp. YBJ-1 prokMSA_id:72262 H21.73.f AF005751 prokMSA_id:75730 45 from Patent WO0246392 AX557347 prokMSA_id:81243 Thermus scotoductus clone 1-43 prokMSA_id:81961 Thermus scotoductus clone 1-71 2.7.2.1.2 T.FILIFORMIS_SUBGROUP 11 seqs 2.7.2.1.2.136 OTU 9 seqs prokMSA_id:1360 Thermus filiformis prokMSA_id:1383 Thermus sp. str. W28 A.1 prokMSA_id:1384 Thermus sp. str. Tok8 A.1 prokMSA_id:1385 Thermus sp. str. Tok20 A.1 prokMSA_id:1388 Thermus sp. str. Tok3 A.1 prokMSA_id:1392 Thermus sp. str. Rt4 1A prokMSA_id:1393 Thermus sp. str. OK6 A.1 prokMSA_id:1394 Thermus sp. str. T351 prokMSA_id:38282 Thermus sp. clone 2.7.2.1.2.638 OTU 2 seqs prokMSA_id:1386 clone OPS1 prokMSA_id:2640 clone OPB88. AF027006 2.7.2.1.3 MEI.RUBER_SUBGROUP 22 seqs 2.7.2.1.3.563 OTU 1 seq prokMSA_id:60062 Vulcanithermus medioatlanticus strain TR 2.7.2.1.3.678 OTU 1 seq prokMSA_id:1404 Meiothermus chliarophilus str. ALT-8 DSM 9957 2.7.2.1.3.679 OTU 3 seqs prokMSA_id:1405 Meiothermus silvanus str. V1-R2 DSM 9946 prokMSA_id:1406 Meiothermus silvanus str. GY-8. Y13598 prokMSA_id:1407 Meiothermus silvanus str. GY-10. Y13599 2.7.2.1.3.941 OTU 17 seqs prokMSA_id:1395 Thermus sp. str. ac-17 prokMSA_id:1396 Meiothermus cerbereus str. GY-1 DSM 11376 . Y13594 prokMSA_id:1397 Meiothermus cerbereus str. GY-5. Y13595 prokMSA_id:1398 Thermus sp. str. ac-2 prokMSA_id:1400 Meiothermus ruber prokMSA_id:1401 Meiothermus ruber str. 16105. Y13596 prokMSA_id:1402 Meiothermus ruber str. 16106. Y13597 prokMSA_id:1403 Meiothermus ruber str. Loginova 21 ATCC 35948 prokMSA_id:17405 Meiothermus rosaceus prokMSA_id:20802 Meiothermus taiwanensis strain WR-220 prokMSA_id:26209 Meiothermus taiwanensis strain WR-30T prokMSA_id:56011 Thermus sp. R55-10 AF407749 prokMSA_id:56267 clone G21 prokMSA_id:60587 clone B01 prokMSA_id:60593 clone G34 prokMSA_id:60612 clone R03 prokMSA_id:69769 Meiothermus sp. R55-11 2.7.2.2 DEINOCOCCUS_GROUP 17 seqs 2.7.2.2.124 OTU 5 seqs prokMSA_id:1411 Deinococcus geothermalis str. AG-5a prokMSA_id:1412 Deinococcus geothermalis str. RSPS-2a prokMSA_id:1413 Deinococcus geothermalis str. AG-3a prokMSA_id:1420 Deinococcus geothermalis str. E50053. AJ000002 prokMSA_id:1421 Deinococcus geothermalis str. E50053. Y15444 2.7.2.2.335 OTU 3 seqs prokMSA_id:1414 Deinococcus murrayi str. ALT-1b prokMSA_id:1415 Deinococcus murrayi str. RSPS-7a prokMSA_id:1416 Deinococcus murrayi str. RSG-1.2 2.7.2.2.52 OTU 3 seqs prokMSA_id:1417 Deinococcus radiodurans DSM 20539 prokMSA_id:25349 Deinococcus radiodurans DC prokMSA_id:55007 Deinococcus radiodurans chromosome 1 complete 2.7.2.2.637 OTU 1 seq prokMSA_id:62482 Deinococci clone LA7-B27N 2.7.2.2.688 OTU 1 seq prokMSA_id:1408 Deinococcus proteolyticus DSM 20540 2.7.2.2.700 OTU 1 seq prokMSA_id:1410 Deinococcus radiophilus DSM 20551 2.7.2.2.720 OTU 1 seq prokMSA_id:1419 Deinococcus radiopugnans ATCC 19172 2.7.2.2.920 OTU 1 seq prokMSA_id:63290 clone RCP1-75 2.7.2.2.996 OTU 1 seq prokMSA_id:1418 Deinococcus radiodurans ATCC 35073 2.8 ENVIRONMENTAL_CLONE_OPB80_GROUP 28 seqs 2.8.114 OTU 1 seq prokMSA_id:63289 clone RCP2-64 2.8.127 OTU 1 seq prokMSA_id:1431 clone SJA-171 2.8.130 OTU 1 seq prokMSA_id:1432 clone SJA-176 2.8.148 OTU 1 seq prokMSA_id:1435 clone SJA-22 2.8.211 OTU 2 seqs prokMSA_id:1434 clone OPB80 prokMSA_id:1436 clone OPB90 2.8.308 OTU 4 seqs prokMSA_id:30869 clone HTG11 AF418960 prokMSA_id:54457 clone HTF1 AF418958 prokMSA_id:57713 clone HTD12 prokMSA_id:57714 clone HTB7 2.8.326 OTU 1 seq prokMSA_id:85439 clone ST01-SN3H 2.8.457 OTU 1 seq prokMSA_id:57715 clone HTC12 2.8.459 OTU 3 seqs prokMSA_id:58376 candidate division OP10 clone SBRT162 AF368189 prokMSA_id:58377 candidate division OP10 clone SBRT161 AF368187 prokMSA_id:58378 candidate division OP10 clone SBRT152 2.8.484 OTU 1 seq prokMSA_id:63206 clone FW68 2.8.495 OTU 3 seqs prokMSA_id:46234 firmicute clone SM2H09 prokMSA_id:46324 firmicute clone SM2D03 prokMSA_id:46343 clone SM2G08 2.8.514 OTU 2 seqs prokMSA_id:66823 candidate division OP10 clone SBRA309 prokMSA_id:66825 candidate division OP10 clone SBRA136 2.8.650 OTU 2 seqs prokMSA_id:17343 CFB/Green sulfur group clone KL-11-1-13 AF408271 prokMSA_id:80475 candidate division OP10 clone W1-4H 2.8.676 OTU 1 seq prokMSA_id:71249 SBR1039 2.8.728 OTU 1 seq prokMSA_id:81869 clone ZZ12AC2 2.8.763 OTU 1 seq prokMSA_id:1429 clone OPB50 2.8.903 OTU 1 seq prokMSA_id:32254 WD294 clone WD294 2.8.925 OTU 1 seq prokMSA_id:41280 UASB_TL26 complete 2.9 LEPTOSPIRILLUM-NITROSPIRA 107 seqs 2.9.1 NITROSPIRA_GROUP 44 seqs 2.9.1.1 NSP.MARINA_SUBGROUP 6 seqs 2.9.1.1.199 OTU 1 seq prokMSA_id:1443 Nitrospira marina 2.9.1.1.216 OTU 1 seq prokMSA_id:1449 Cytophaga sp. str. BD3-8 2.9.1.1.255 OTU 1 seq prokMSA_id:1450 clone Sva0777 2.9.1.1.269 OTU 1 seq prokMSA_id:70898 clone TK24 2.9.1.1.984 OTU 2 seqs prokMSA_id:75438 Nitrospira sp. clone JG37-AG-131 prokMSA_id:76201 clone JG37-AG-70 2.9.1.2 NSP.MOSCOVIENSIS_SUBGROUP 38 seqs 2.9.1.2.1031 OTU 1 seq prokMSA_id:65688 soil clone S0126 2.9.1.2.179 OTU 1 seq prokMSA_id:60596 clone G19 2.9.1.2.260 OTU 1 seq prokMSA_id:1457 clone K20-81 2.9.1.2.278 OTU 1 seq prokMSA_id:1458 clone K20-78 2.9.1.2.407 OTU 1 seq prokMSA_id:46321 Green Bay ferromanganous micronodule MNB2 2.9.1.2.543 OTU 1 seq prokMSA_id:47795 clone t015 2.9.1.2.589 OTU 2 seqs prokMSA_id:44024 sludge A31 AF234694 prokMSA_id:52208 sludge S47 2.9.1.2.854 OTU 1 seq prokMSA_id:1495 clone 1404-16 2.9.1.2.860 OTU 15 seqs prokMSA_id:1460 Nitrospira sp prokMSA_id:1461 Nitrospira sp prokMSA_id:1462 Nitrospira sp prokMSA_id:1463 Nitrospira sp prokMSA_id:1464 Nitrospira sp prokMSA_id:1465 Nitrospira sp prokMSA_id:1466 Nitrospira sp prokMSA_id:1467 Nitrospira sp prokMSA_id:1471 Nitrospira sp prokMSA_id:1473 Nitrospira sp prokMSA_id:1474 Nitrospira sp prokMSA_id:1480 clone A-11 prokMSA_id:1481 clone A-4 prokMSA_id:1493 Nitrospira cf. moscoviensis SBR2016 str. SBR2016 prokMSA_id:19768 PHOS-HE34 2.9.1.2.864 OTU 14 seqs prokMSA_id:1456 Nitrospira moscoviensis str. M-1 DSM 10035 prokMSA_id:1468 Nitrospira sp prokMSA_id:1472 Nitrospira sp prokMSA_id:1475 Nitrospira sp prokMSA_id:1490 Nitrospira sp prokMSA_id:1491 Nitrospira cf. moscoviensis SBR1015 str. SBR1015 prokMSA_id:1492 Nitrospira cf. moscoviensis SBR1024 str. SBR1024 prokMSA_id:1494 Nitrospira cf. moscoviensis SBR2046 str. SBR2046 prokMSA_id:38830 Green Bay ferromanganous micronodule MNC2 prokMSA_id:50234 clone HT2BB6 AF418966 prokMSA_id:85357 clone CCU23 AY221079 prokMSA_id:88224 DSSD62 AY328760 prokMSA_id:88698 DSSD16 AY328715 prokMSA_id:93640 Nitrospira sp. clone JG36-GS-2 AJ582041 2.9.2 STR.SBR1108 1 seq 2.9.2.663 OTU 1 seq prokMSA_id:32174 SBR1108 2.9.3 LEPTOSPIRILLUM_GROUP 40 seqs 2.9.3.1 LPP.FERROOXIDANS_SUBGROUP 31 seqs 2.9.3.1.157 OTU 11 seqs prokMSA_id:1509 Leptospirillum ferrooxidans prokMSA_id:1510 clone TRA1-10 prokMSA_id:17118 Leptospirillum ferrooxidans strain CF12 complete prokMSA_id:17578 Leptospirillum ferrooxidans strain P3a complete prokMSA_id:24590 Leptospirillum ferrooxidans strain Chil-Lf2 complete prokMSA_id:28578 Leptospirillum ferrooxidans strain 49879 complete prokMSA_id:30465 Leptospirillum ferrooxidans strain Parys complete prokMSA_id:39980 Leptospirillum ferrooxidans strain Sy complete prokMSA_id:40142 Leptospirillum sp. NOen1 prokMSA_id:41859 Leptospirillum ferrooxidans strain BCT2 complete prokMSA_id:58308 clone BA39 2.9.3.1.194 OTU 17 seqs prokMSA_id:1499 clone cOS17. X86772 prokMSA_id:1500 Leptospirillum sp. DSM 2391 prokMSA_id:1503 Leptospirillum ferrooxidans prokMSA_id:1507 clone cOS7 prokMSA_id:28124 Leptospirillum sp. K01 prokMSA_id:29535 Leptospirillum ferriphilum strain Fairview AF356830 prokMSA_id:29635 Leptospirillum sp. TzT-JG-3 prokMSA_id:34533 Leptospirillum ferrooxidans strain TzT-B1-K3 prokMSA_id:38108 Leptospirillum sp. strain DSM 2391 prokMSA_id:38542 Leptospirillum ferrooxidans strain TzT-B1-K4 prokMSA_id:38928 Leptospirillum sp. isolate LA prokMSA_id:39717 Leptospirillum ferriphilum strain ATCC 49881 AF356829 prokMSA_id:41525 Leptospirillum sp. TzT-JG-24 prokMSA_id:43208 Leptospirillum sp. K16 prokMSA_id:45840 BA24 prokMSA_id:50647 Leptospirillum ferriphilum strain Warwick prokMSA_id:56048 Leptospirillum sp. MT6 2.9.3.1.611 OTU 1 seq prokMSA_id:58314 clone AW11 2.9.3.1.705 OTU 1 seq prokMSA_id:77042 actinobacterium clone Sh765B-AG-45 2.9.3.1.738 OTU 1 seq prokMSA_id:76626 clone JG34-KF-252 2.9.3.2 ENVIRONMENTAL_CLONE_C0S62 9 seqs 2.9.3.2.240 OTU 3 seqs prokMSA_id:56204 clone BA33 prokMSA_id:58317 clone AW4 prokMSA_id:63293 clone RCP2-12 2.9.3.2.81 OTU 1 seq prokMSA_id:1511 clone cOS62 2.9.3.2.833 OTU 5 seqs prokMSA_id:54251 BA29 prokMSA_id:58150 clone ASL9 prokMSA_id:58311 clone AW5 prokMSA_id:58316 clone AW1 prokMSA_id:63295 clone RCP1-70 2.9.4 TDV.YELLOWSTONII_GROUP 22 seqs 2.9.4.15 OTU 1 seq prokMSA_id:1526 str. BD2-6 2.9.4.16 OTU 1 seq prokMSA_id:1528 clone OPI-2 2.9.4.18 OTU 1 seq prokMSA_id:1529 clone OPB67A 2.9.4.22 OTU 3 seqs prokMSA_id:1524 clone TG25 prokMSA_id:1525 clone TG33 prokMSA_id:1704 clone TG14 2.9.4.287 OTU 4 seqs prokMSA_id:1523 Thermodesulfovibrio islandicus str. R1ha3 prokMSA_id:1531 Thermodesulfovibrio TGL-LS1 str. TGL-LS1 prokMSA_id:1532 Thermodesulfovibrio TSL-P1 str. TSL-P1 prokMSA_id:23948 Nitrospira sp. clone 2.9.4.366 OTU 1 seq prokMSA_id:63218 clone FW114 2.9.4.443 OTU 1 seq prokMSA_id:34433 clone GOUTA19 2.9.4.518 OTU 1 seq prokMSA_id:51852 Saltmarsh clone LCP-6 2.9.4.542 OTU 1 seq prokMSA_id:63221 clone FW19 2.9.4.544 OTU 1 seq prokMSA_id:63223 clone FW5 2.9.4.577 OTU 2 seqs prokMSA_id:27466 Nitrospira sp. SRI-237 prokMSA_id:46856 Nitrospira sp. SRI-9 AF255603 2.9.4.643 OTU 1 seq prokMSA_id:43630 Nitrospira sp. clone SUBT-7 2.9.4.655 OTU 1 seq prokMSA_id:77126 Nitrospirae clone S15A-MN30 2.9.4.681 OTU 1 seq prokMSA_id:63220 clone FW27 2.9.4.697 OTU 1 seq prokMSA_id:63224 clone FW118 2.9.4.982 OTU 1 seq prokMSA_id:30232 Nitrospira group MERTZ_2CM_109 2.10 PROSTHECOBACTER_GROUP 154 seqs 2.10.1 ENVIRONMENTAL_CLONE_WCHB1-41_SUBGROUP 46 seqs 2.10.1.108 OTU 1 seq prokMSA_id:25675 Verrucomicrobia MERTZ_21CM_62 2.10.1.111 OTU 1 seq prokMSA_id:62665 Verrucomicrobia clone ML635J-35 2.10.1.146 OTU 1 seq prokMSA_id:24730 Verrucomicrobia MERTZ_2CM_293 2.10.1.169 OTU 1 seq prokMSA_id:71809 Verrucomicrobia clone LD1-PA26 2.10.1.187 OTU 2 seqs prokMSA_id:1542 clone vadinHB65 prokMSA_id:31745 AA08 2.10.1.21 OTU 1 seq prokMSA_id:63770 Verrucomicrobia clone LD1-PB9 2.10.1.24 OTU 1 seq prokMSA_id:63772 Verrucomicrobia clone LD1-PB3 2.10.1.253 OTU 1 seq prokMSA_id:25775 Verrucomicrobia MERTZ_2CM_283 2.10.1.361 OTU 1 seq prokMSA_id:43552 clone KS52 2.10.1.40 OTU 1 seq prokMSA_id:39097 verrucomicrobium DEV055 clone DEV055 2.10.1.427 OTU 1 seq prokMSA_id:35755 equine intestinal clone:YT6 2.10.1.446 OTU 2 seqs prokMSA_id:63783 Verrucomicrobia clone LD1-PA37 prokMSA_id:63784 Verrucomicrobia clone LD1-PA34 2.10.1.469 OTU 1 seq prokMSA_id:38307 clone Car98rb 2.10.1.486 OTU 1 seq prokMSA_id:33256 verrucomicrobium DEV045 clone DEV045 2.10.1.491 OTU 1 seq prokMSA_id:1535 clone WCHA1-33 2.10.1.493 OTU 1 seq prokMSA_id:1536 clone WCHA1-80 2.10.1.496 OTU 1 seq prokMSA_id:1538 clone RFP12 2.10.1.504 OTU 1 seq prokMSA_id:1539 clone CLEAR-26 2.10.1.510 OTU 1 seq prokMSA_id:1540 clone WCHB1-41 2.10.1.521 OTU 1 seq prokMSA_id:1541 clone vadinBE97 2.10.1.525 OTU 1 seq prokMSA_id:1544 clone BURTON-54 2.10.1.526 OTU 1 seq prokMSA_id:1545 clone CLEAR-12 2.10.1.530 OTU 1 seq prokMSA_id:63771 Verrucomicrobia clone LD1-PB20 2.10.1.532 OTU 1 seq prokMSA_id:63774 Verrucomicrobia clone LD1-PB2 2.10.1.533 OTU 1 seq prokMSA_id:63776 Verrucomicrobia clone LD1-PB12 2.10.1.539 OTU 3 seqs prokMSA_id:33164 equine intestinal sp. DL14 clone DL14 prokMSA_id:44416 equine intestinal sp. DL12 clone DL12 prokMSA_id:45703 equine intestinal sp. PL16 clone PL16 2.10.1.547 OTU 1 seq prokMSA_id:63777 Verrucomicrobia clone LD1-PB1 2.10.1.559 OTU 1 seq prokMSA_id:63790 Verrucomicrobia clone LD1-PA20 2.10.1.586 OTU 1 seq prokMSA_id:1543 clone Sva0107a 2.10.1.615 OTU 1 seq prokMSA_id:39740 Verrucomicrobia MERTZ_2CM_235 2.10.1.629 OTU 1 seq prokMSA_id:70013 Verrucomicrobia clone LD1-PA50 2.10.1.686 OTU 1 seq prokMSA_id:70602 a2b018 2.10.1.692 OTU 1 seq prokMSA_id:37080 verrucomicrobiales Sva0585 2.10.1.760 OTU 3 seqs prokMSA_id:62664 Verrucomicrobia clone ML623J-15 prokMSA_id:63827 Verrucomicrobia clone ML316M-1 prokMSA_id:63828 Verrucomicrobia clone ML1228J-2 2.10.1.806 OTU 4 seqs prokMSA_id:61852 Verrucomicrobia clone R103-B35 prokMSA_id:61853 Verrucomicrobia clone R76-B18 prokMSA_id:61854 Verrucomicrobia clone R76-B66 prokMSA_id:61856 Verrucomicrobia clone R76-B128 2.10.1.885 OTU 1 seq prokMSA_id:69582 soil PBS-III-26 2.10.1.985 OTU 1 seq prokMSA_id:37973 soil PBS-III-20 2.10.2 VER.SP_STR_VEGLC2_SUBGROUP 19 seqs 2.10.2.103 OTU 1 seq prokMSA_id:39216 Rhizosphere soil clone RSC-II-64 2.10.2.110 OTU 1 seq prokMSA_id:33333 Verrucomicrobia MERTZ_2CM_57 2.10.2.29 OTU 6 seqs prokMSA_id:1550 clone HstpL11 prokMSA_id:1551 clone HstpL20 prokMSA_id:1552 clone HstpL53 prokMSA_id:1553 clone HstpL65 prokMSA_id:41135 Fucophilus fucoidanolyticus prokMSA_id:74031 CHAB-II-49 5' 2.10.2.433 OTU 1 seq prokMSA_id:63314 clone RCP2-6 2.10.2.554 OTU 1 seq prokMSA_id:1554 clone EKHO-20 2.10.2.555 OTU 1 seq prokMSA_id:1556 clone vadinHA64 2.10.2.567 OTU 1 seq prokMSA_id:1565 clone RB39 2.10.2.568 OTU 1 seq prokMSA_id:1566 clone TM18 2.10.2.646 OTU 5 seqs prokMSA_id:17862 rumen 2C28d-9 prokMSA_id:95381 Verrucomicrobia clone NE53 AJ575736 prokMSA_id:95864 Verrucomicrobia clone NE55 AJ575738 prokMSA_id:96571 Verrucomicrobia clone NE37 AJ575735 prokMSA_id:96658 Verrucomicrobia clone NE54 AJ575737 2.10.2.731 OTU 1 seq prokMSA_id:25549 FukuN111 2.10.3 ENVIRONMENTAL_CLONE_OPB35_SUBGROUP 20 seqs 2.10.3.11 OTU 1 seq prokMSA_id:17035 sludge H2 2.10.3.145 OTU 1 seq prokMSA_id:31747 verrucomicrobium DEV008 clone DEV008 2.10.3.293 OTU 1 seq prokMSA_id:52814 verrucomicrobium DEV114 clone DEV114 2.10.3.296 OTU 2 seqs prokMSA_id:30852 Chlamydiales/Verrucomicrobia group clone 1_29a AJ431300 prokMSA_id:37435 Agricultural soil clone SC-I-74 2.10.3.357 OTU 1 seq prokMSA_id:21798 verrucomicrobium DEV059 clone DEV059 2.10.3.399 OTU 1 seq prokMSA_id:35236 Verrucomicrobia EV107 2.10.3.44 OTU 1 seq prokMSA_id:27626 Rhizosphere soil clone RSC-II-18 2.10.3.560 OTU 1 seq prokMSA_id:63231 clone FW49 2.10.3.581 OTU 1 seq prokMSA_id:1572 clone OPB35 2.10.3.607 OTU 1 seq prokMSA_id:1585 clone RB01 2.10.3.610 OTU 1 seq prokMSA_id:1587 clone RB14 2.10.3.660 OTU 4 seqs prokMSA_id:26596 Verrucomicrobia EV134 prokMSA_id:27540 Verrucomicrobia EV106 prokMSA_id:41724 Verrucomicrobia EV104 AJ132482 prokMSA_id:54478 Verrucomicrobia EV102 AJ132480 2.10.3.712 OTU 2 seqs prokMSA_id:63232 clone FW4 prokMSA_id:72827 Verrucomicrobia clone 12-30 AF351215 2.10.3.772 OTU 1 seq prokMSA_id:81873 Verrucomicrobia clone VC12 2.10.3.820 OTU 1 seq prokMSA_id:31253 verrucomicrobium DEV020 clone DEV020 2.10.4 PRSB.DEJONGEII_SUBGROUP 35 seqs 2.10.4.1000 OTU 1 seq prokMSA_id:35295 verrucomicrobium DEV010 clone DEV010 2.10.4.1062 OTU 1 seq prokMSA_id:1594 clone HstpL102 2.10.4.1063 OTU 1 seq prokMSA_id:1596 Verrucomicrobium spinosum str. 145 DSM 4136 2.10.4.1065 OTU 1 seq prokMSA_id:1597 clone HstpL71 2.10.4.133 OTU 2 seqs prokMSA_id:23971 sludge A38 prokMSA_id:35008 sludge A21 2.10.4.203 OTU 6 seqs prokMSA_id:17463 clone S30-1 AJ400240 prokMSA_id:18109 clone L10-6 prokMSA_id:24442 isolate HuCC13 prokMSA_id:31006 clone HuCA18 prokMSA_id:35703 Verrucomicrobia CE59 prokMSA_id:57441 Verrucomicrobia clone P. palm A 54 AJ441243 2.10.4.222 OTU 3 seqs prokMSA_id:1598 clone BURTON-29. AF142847 prokMSA_id:53058 Verrucomicrobia MERTZ_0CM_215 prokMSA_id:59753 clone OB3_171 2.10.4.282 OTU 2 seqs prokMSA_id:47433 Crater Lake CL500-85 prokMSA_id:53214 verrucomicrobium DEV005 clone DEV005 AJ401105 2.10.4.288 OTU 3 seqs prokMSA_id:1588 Prosthecobacter dejongeii str. FC1 ATCC 27091 prokMSA_id:22941 FukuS27 prokMSA_id:91270 clone K2-30-31 AY344427 2.10.4.303 OTU 1 seq prokMSA_id:36316 Verrucomicrobia MERTZ_0CM_339 2.10.4.345 OTU 1 seq prokMSA_id:43995 Verrucomicrobia MERTZ_0CM_111 2.10.4.410 OTU 1 seq prokMSA_id:1601 clone ACE-12 2.10.4.414 OTU 1 seq prokMSA_id:1602 clone T62 2.10.4.430 OTU 1 seq prokMSA_id:43412 Agricultural soil clone SC-I-26 2.10.4.475 OTU 2 seqs prokMSA_id:17307 verrucomicrobium DEV006 clone DEV006 prokMSA_id:19930 verrucomicrobium DEV179 clone DEV179 2.10.4.531 OTU 1 seq prokMSA_id:46082 Verrucomicrobia Arctic96BD-2 2.10.4.613 OTU 1 seq prokMSA_id:55975 Verrucomicrobia clone P. palm C 85 2.10.4.661 OTU 1 seq prokMSA_id:1592 Prosthecobacter fusiformis str. FC4 DSM 8960 2.10.4.671 OTU 1 seq prokMSA_id:1593 Prosthecobacter vanneervenii str. FC2 ATCC 70019 2.10.4.868 OTU 1 seq prokMSA_id:26283 verrucomicrobium DEV064 clone DEV064 2.10.4.871 OTU 2 seqs prokMSA_id:79805 Verrucomicrobia clone BTM64 prokMSA_id:79963 Verrucomicrobia clone BTM48 2.10.4.9 OTU 1 seq prokMSA_id:45457 verrucomicrobium DEV132 clone DEV132 2.10.5 ENVIRONMENTAL_CLONE_WCHD3-88 9 seqs 2.10.5.223 OTU 1 seq prokMSA_id:1603 clone WCHD3-88 2.10.5.814 OTU 4 seqs prokMSA_id:28723 FukuN43 AJ290079 prokMSA_id:45580 FukuN18 prokMSA_id:73340 FukuN106 prokMSA_id:97376 Verrucomicrobia clone NE06 AJ575731 2.10.5.888 OTU 4 seqs prokMSA_id:29275 Candidatus Xiphinematobacter brevicolli prokMSA_id:37483 Candidatus Xiphinematobacter rivesi prokMSA_id:43374 Candidatus Xiphinematobacter americani prokMSA_id:65712 soil clone C1172 2.10.6 ENVIRONMENTAL_CLONE_DA101_SUBGROUP 25 seqs 2.10.6.155 OTU 1 seq prokMSA_id:1633 grassland soil sample approx. 15 mi. N of Pullman WA clone E 2.10.6.219 OTU 2 seqs prokMSA_id:48886 verrucomicrobium DEV035 clone DEV035 prokMSA_id:52421 verrucomicrobium DEV009 clone DEV009 2.10.6.249 OTU 1 seq prokMSA_id:82424 clone KD6-84 2.10.6.352 OTU 8 seqs prokMSA_id:44313 Metal-contaminated soil clone K20-28 prokMSA_id:51214 Metal-contaminated soil clone K20-07 prokMSA_id:61310 Verrucomicrobia clone SMS9.135WL AY043942 prokMSA_id:61313 Verrucomicrobia clone SMS9.23WL AY043944 prokMSA_id:61321 Verrucomicrobia clone NMS8.47WL prokMSA_id:61329 Verrucomicrobia clone NMW3.82WL AY043925 prokMSA_id:61490 Verrucomicrobia clone NOS7.72WL AY043729 prokMSA_id:65927 soil clone C0154 2.10.6.394 OTU 1 seq prokMSA_id:28009 verrucomicrobium DEV003 clone DEV003 2.10.6.417 OTU 1 seq prokMSA_id:1605 clone C019 2.10.6.418 OTU 1 seq prokMSA_id:1607 unnamed organism 2.10.6.420 OTU 1 seq prokMSA_id:1608 unnamed organism 2.10.6.50 OTU 1 seq prokMSA_id:43879 clone cvf122212 2.10.6.565 OTU 1 seq prokMSA_id:33602 Verrucomicrobia EV116 2.10.6.701 OTU 1 seq prokMSA_id:46832 Riz6E2 2.10.6.792 OTU 1 seq prokMSA_id:78274 Verrucomicrobia clone:Rs-P07 2.10.6.875 OTU 1 seq prokMSA_id:1622 clone LD19 2.10.6.876 OTU 1 seq prokMSA_id:1623 clone LD29 2.10.6.881 OTU 1 seq prokMSA_id:1624 clone DA101 2.10.6.892 OTU 1 seq prokMSA_id:1625 unnamed organism 2.10.6.911 OTU 1 seq prokMSA_id:1631 clone RB35 2.11 ANR.THERMOTERRENUM_GROUP 49 seqs 2.11.1013 OTU 1 seq prokMSA_id:1651 Aminobacterium mobilis str. ILE-3 2.11.117 OTU 1 seq prokMSA_id:78257 clone:Rs-D89 2.11.248 OTU 4 seqs prokMSA_id:1637 clone vadinCA02 prokMSA_id:1652 clone SYNE4. U46538 prokMSA_id:36934 clone TDC-S1:29 prokMSA_id:81485 MTCE-T2 11H 2.11.272 OTU 1 seq prokMSA_id:78385 low G+C Gram-positive clone:Rs-C88 2.11.297 OTU 1 seq prokMSA_id:1638 clone vadinHA73 2.11.353 OTU 1 seq prokMSA_id:82669 low G+C Gram-positive clone PD-UASB-13 2.11.359 OTU 1 seq prokMSA_id:1658 clone TUG14 2.11.467 OTU 2 seqs prokMSA_id:1653 clone OPB46 prokMSA_id:1654 clone OPB47 2.11.512 OTU 2 seqs prokMSA_id:1634 Anaerobaculum thermoterrenum str. RWcit ACM 5076 prokMSA_id:42039 Anaerobaculum mobile strain NGA 2.11.60 OTU 1 seq prokMSA_id:68344 Flexistipes sp. E3_33 E1 oral isolate 2.11.601 OTU 2 seqs prokMSA_id:50590 TA19 prokMSA_id:81956 MTCE-T2 8D 2.11.617 OTU 1 seq prokMSA_id:72767 O11D9 2.11.652 OTU 2 seqs prokMSA_id:78484 clone JG30-KF-AS13 AJ536888 prokMSA_id:78862 clone JG30-KF-CM45 2.11.677 OTU 2 seqs prokMSA_id:18164 tbr4-7 prokMSA_id:71796 tbr1-2 2.11.717 OTU 5 seqs prokMSA_id:1635 Desulfothiovibrio peptidovorans str. G4207. U52817 prokMSA_id:70882 Dethiosulfovibrio russensis strain sr13 DSM 12577 AF234543 prokMSA_id:71455 Dethiosulfovibrio marinus strain sr12 DSM 12538 AF234542 prokMSA_id:72749 Dethiosulfovibrio acidaminovorans prokMSA_id:72998 Dethiosulfovibrio russensis strain WS 100 DSM 12537 2.11.719 OTU 2 seqs prokMSA_id:30163 Flexistipes-like sp. oral clone BA121 prokMSA_id:86619 Synergistes sp. P4G_18 P1 2.11.726 OTU 1 seq prokMSA_id:1659 clone OPB72 2.11.740 OTU 1 seq prokMSA_id:49883 clone p-4292-4Wa3 2.11.808 OTU 11 seqs prokMSA_id:1642 clone BH017 prokMSA_id:1643 clone D084 prokMSA_id:1644 clone D006 prokMSA_id:1645 clone W028 prokMSA_id:1646 clone W090 prokMSA_id:47490 Flexistipes-like sp. oral clone BB062 prokMSA_id:68345 Firmicutes oral clone MCE3_120 E3 prokMSA_id:68348 Firmicutes oral clone MCE7_5 E2 prokMSA_id:71329 Flexistipes-like sp. oral clone BH007 prokMSA_id:92501 Deferribacteres sp. oral clone JV023 AY349372 prokMSA_id:92848 Deferribacteres sp. oral clone JV001 AY349370 2.11.915 OTU 1 seq prokMSA_id:1636 clone vadinBB02 2.11.961 OTU 1 seq prokMSA_id:1641 clone BB48 2.11.969 OTU 2 seqs prokMSA_id:66306 clone SHA-110 prokMSA_id:66918 clone SHA-1 2.11.974 OTU 1 seq prokMSA_id:19846 clone:BCf4-02 2.11.978 OTU 1 seq prokMSA_id:1649 Aminobacterium colombiense str. ALA-1 2.11.988 OTU 1 seq prokMSA_id:38526 clone:BCf7-04 2.12 ENVIRONMENTAL_CLONE_OPB2_GROUP 6 seqs 2.12.1015 OTU 1 seq prokMSA_id:17532 Banisveld landfill BVC56 2.12.1077 OTU 1 seq prokMSA_id:24187 clone Car90fb 2.12.398 OTU 1 seq prokMSA_id:1663 clone OPB2 2.12.408 OTU 1 seq prokMSA_id:1664 str. BD3-9 2.12.628 OTU 1 seq prokMSA_id:49231 clone GOUTB15 2.12.774 OTU 1 seq prokMSA_id:1665 str. BD4-9 2.13 NITROSPINA_SUBDIVISION 240 seqs 2.13.2 NITROSPINA_GROUP 12 seqs 2.13.2.1082 OTU 1 seq prokMSA_id:43480 Car184f 2.13.2.434 OTU 1 seq prokMSA_id:47701 delta SA71 2.13.2.444 OTU 1 seq prokMSA_id:1673 Nitrospina gracilis str. Nb-211 2.13.2.447 OTU 1 seq prokMSA_id:1675 str. BD4-10 2.13.2.580 OTU 1 seq prokMSA_id:19976 delta Arctic97A-12 2.13.2.594 OTU 2 seqs prokMSA_id:24687 GR-296.I.52 clone GR-296.I.52 prokMSA_id:28255 delta GR-296.I.86 2.13.2.769 OTU 1 seq prokMSA_id:70140 firmicute isolate ikaite un-c23 2.13.2.785 OTU 3 seqs prokMSA_id:28642 soil PBS-II-35 prokMSA_id:30315 soil PBS-II-5 prokMSA_id:36982 soil PBS-III-32 AJ390459 2.13.2.955 OTU 1 seq prokMSA_id:27569 delta Arctic95C-6 2.13.3 ENVIRONMENTAL_CLONE_OS_K_GROUP 3 seqs 2.13.3.453 OTU 1 seq prokMSA_id:1678 Pele's Vents clone PVB_36 2.13.3.546 OTU 1 seq prokMSA_id:20039 Ferribacter thermoautotrophicus clone KA2b 2.13.3.703 OTU 1 seq prokMSA_id:63800 candidate division WS3 clone LD1-PA13 2.13.4 ENVIRONMENTAL_CLONE_OPB5_GROUP 54 seqs 2.13.4.1073 OTU 1 seq prokMSA_id:41163 candidate division OP3 MERTZ_2CM_315 2.13.4.118 OTU 1 seq prokMSA_id:82144 clone KD1-1 2.13.4.152 OTU 1 seq prokMSA_id:53679 SHA-89 2.13.4.164 OTU 2 seqs prokMSA_id:25261 candidate division OP8 MERTZ_2CM_108 prokMSA_id:51674 candidate division OP8 MERTZ_21CM_72 2.13.4.165 OTU 3 seqs prokMSA_id:1701 str. NKB18 prokMSA_id:19789 clone Car60fc prokMSA_id:45395 candidate division OP8 MERTZ_21CM_147 AF424331 2.13.4.23 OTU 3 seqs prokMSA_id:1683 str. BD3-11 prokMSA_id:48834 strain NS1019 prokMSA_id:87958 planctomycete clone NS-61 AY283150 2.13.4.243 OTU 1 seq prokMSA_id:52397 Candidate division OP2 clone OPB25 complete 2.13.4.251 OTU 1 seq prokMSA_id:34948 'KTK 36' 2.13.4.3 OTU 12 seqs prokMSA_id:1682 str. KOLL2a prokMSA_id:19967 Anoxic biofilm clone Pla1-14 prokMSA_id:21761 Anoxic biofilm clone Pla2-19 prokMSA_id:29574 Anoxic biofilm clone Pla1-47 prokMSA_id:30943 Anoxic biofilm clone Pla2-10 prokMSA_id:32022 Anoxic biofilm clone Pla1-1 prokMSA_id:38720 anoxic sludge KU2 prokMSA_id:40152 Anoxic biofilm clone Pla1-44 prokMSA_id:40184 Anoxic biofilm clone Pla1-48 prokMSA_id:45461 Anoxic biofilm clone Pla2-48 prokMSA_id:48522 Anoxic biofilm clone Pla2-22 prokMSA_id:53683 Candidatus Kuenenia stuttgartiensis complete ; internal tran 2.13.4.325 OTU 1 seq prokMSA_id:70520 C1_B017 2.13.4.330 OTU 1 seq prokMSA_id:60591 clone G58 2.13.4.349 OTU 1 seq prokMSA_id:32255 soil PBS-25 2.13.4.379 OTU 1 seq prokMSA_id:30457 candidate division OP8 MERTZ_2CM_344 2.13.4.437 OTU 2 seqs prokMSA_id:78103 Termite group 1 clone:Rs-D43 prokMSA_id:78190 Termite group 1 clone:Rs-M73 2.13.4.438 OTU 1 seq prokMSA_id:1703 clone TG13 2.13.4.485 OTU 1 seq prokMSA_id:80983 clone O1aA90 2.13.4.492 OTU 1 seq prokMSA_id:1681 str. clone koll11 2.13.4.499 OTU 1 seq prokMSA_id:1688 clone KTK 32 2.13.4.505 OTU 1 seq prokMSA_id:23667 CtaxTah-42 2.13.4.506 OTU 1 seq prokMSA_id:17055 clone KS89 2.13.4.520 OTU 2 seqs prokMSA_id:23626 candidate division OP8 MERTZ_21CM_186 prokMSA_id:35212 candidate division OP8 MERTZ_2CM_346 2.13.4.540 OTU 1 seq prokMSA_id:70747 a2b031 2.13.4.598 OTU 1 seq prokMSA_id:33161 a2b010 2.13.4.605 OTU 1 seq prokMSA_id:36990 SBR2095 2.13.4.63 OTU 1 seq prokMSA_id:1705 clone WCHA1-39 2.13.4.65 OTU 1 seq prokMSA_id:1707 clone WCHA1-89 2.13.4.662 OTU 2 seqs prokMSA_id:1699 str. TIHP368-03 prokMSA_id:1700 str. TIHP368-11 2.13.4.69 OTU 1 seq prokMSA_id:73076 clone SHA-124 2.13.4.722 OTU 1 seq prokMSA_id:77986 Termite group 1 clone:Rs-H93 2.13.4.74 OTU 1 seq prokMSA_id:1708 clone WFeA1-35 2.13.4.811 OTU 2 seqs prokMSA_id:1680 clone OPB5 prokMSA_id:1684 clone OPB23 2.13.4.857 OTU 1 seq prokMSA_id:77032 clone GuBH2-AD-75 2.13.4.930 OTU 1 seq prokMSA_id:49483 candidate division OP8 MERTZ_21CM_86 2.13.4.993 OTU 1 seq prokMSA_id:77861 Termite group 1 clone:Rs-D95 2.13.5 ENVIRONMENTAL_CLONE_RB25_GROUP 16 seqs 2.13.5.105 OTU 1 seq prokMSA_id:78237 Holophaga sp. clone Hyd24-44 2.13.5.232 OTU 1 seq prokMSA_id:33996 clone KS63 2.13.5.373 OTU 1 seq prokMSA_id:45661 mle1-16 2.13.5.391 OTU 1 seq prokMSA_id:44715 MERTZ_2CM_263 2.13.5.442 OTU 1 seq prokMSA_id:73339 soil clone S0134 2.13.5.452 OTU 1 seq prokMSA_id:79044 Gram-positive isolate 5G01 2.13.5.465 OTU 1 seq prokMSA_id:1716 str. NKB17 2.13.5.468 OTU 1 seq prokMSA_id:1717 clone Sva0515 2.13.5.508 OTU 1 seq prokMSA_id:75917 Holophaga sp. clone JG37-AG-81 2.13.5.516 OTU 1 seq prokMSA_id:76459 clone JG34-KF-153 2.13.5.536 OTU 1 seq prokMSA_id:76461 clone GuBH2-AD-8 2.13.5.572 OTU 1 seq prokMSA_id:63239 clone FW144 2.13.5.591 OTU 1 seq prokMSA_id:73910 Holophaga sp. oral clone CA002 2.13.5.83 OTU 1 seq prokMSA_id:46217 delta MERTZ_21CM_290 2.13.5.97 OTU 1 seq prokMSA_id:1711 str. BD7-11 2.13.5.98 OTU 1 seq prokMSA_id:1712 clone TAYNAYA-25 2.13.6 ENVIRONMENTAL_CLONE_III1-8_GROUP 26 seqs 2.13.6.113 OTU 1 seq prokMSA_id:1718 clone iii1-8 2.13.6.125 OTU 1 seq prokMSA_id:1720 clone SJA-88 2.13.6.129 OTU 1 seq prokMSA_id:1722 clone CLEAR-14 2.13.6.226 OTU 3 seqs prokMSA_id:56349 soil clone S1146 prokMSA_id:65637 soil clone S1145 prokMSA_id:65891 soil clone C0200 2.13.6.333 OTU 2 seqs prokMSA_id:85300 clone D39 prokMSA_id:86560 clone D131 2.13.6.501 OTU 1 seq prokMSA_id:1724 clone Sva0450 2.13.6.541 OTU 1 seq prokMSA_id:76467 Holophaga sp. clone GuBH2-AG-47 2.13.6.588 OTU 2 seqs prokMSA_id:1719 clone SJA-36. AJ009461 prokMSA_id:84306 clone LKC2.127-11 2.13.6.704 OTU 1 seq prokMSA_id:60180 clone TK29 2.13.6.773 OTU 12 seqs prokMSA_id:1721 clone UC38fp prokMSA_id:17007 sponge symbiont RSWS25 AF434953 prokMSA_id:17935 sponge symbiont RSWS7 AF434962 prokMSA_id:18334 sponge symbiont RSWS3 prokMSA_id:19886 sponge symbiont RSWS9 AF434939 prokMSA_id:33722 sponge symbiont RSWS20 prokMSA_id:40884 sponge symbiont RSWS17 prokMSA_id:43895 sponge symbiont RSWS4 AF434959 prokMSA_id:48287 sponge symbiont RSWS2 AF434948 prokMSA_id:48870 sponge symbiont PAUC55 AF186440 prokMSA_id:51461 sponge symbiont PAUC54 AF186439 prokMSA_id:60768 sponge symbiont PAUC49 AF186436 2.13.6.95 OTU 1 seq prokMSA_id:78123 delta clone Hyd24-32 2.13.7 ENVIRONMENTAL_CLONE_32-20_GROUP 3 seqs 2.13.7.151 OTU 1 seq prokMSA_id:1728 clone 32-20 2.13.7.195 OTU 1 seq prokMSA_id:1731 clone PENDANT-12 2.13.7.227 OTU 1 seq prokMSA_id:75259 actinobacterium clone JG37-AG-36 2.13.8 HP.FOETIDA_GROUP 7 seqs 2.13.8.201 OTU 1 seq prokMSA_id:1732 Holophaga foetida str. TMBS4 DSM 6591 2.13.8.204 OTU 1 seq prokMSA_id:1733 clone SJA-87 2.13.8.208 OTU 1 seq prokMSA_id:76766 Holophaga sp. clone GuBH2-AD-9 2.13.8.386 OTU 1 seq prokMSA_id:1736 "Geothrix fermentans" 2.13.8.481 OTU 1 seq prokMSA_id:62398 clone FTLM45 2.13.8.482 OTU 1 seq prokMSA_id:62399 delta clone FTLM205 2.13.8.734 OTU 1 seq prokMSA_id:55664 Acidobacterium group clone FTLM5 2.13.9 ENVIRONMENTAL_CLONE_S027_GROUP 34 seqs 2.13.9.1024 OTU 1 seq prokMSA_id:83178 rumen clone BS5 2.13.9.1052 OTU 1 seq prokMSA_id:41153 Pietermaritzburg Y14-5 2.13.9.316 OTU 1 seq prokMSA_id:1750 unnamed organism 2.13.9.327 OTU 1 seq prokMSA_id:86097 clone FBP241 2.13.9.401 OTU 1 seq prokMSA_id:1769 clone P8 2.13.9.419 OTU 1 seq prokMSA_id:16287 species clone iii3-16 2.13.9.435 OTU 1 seq prokMSA_id:81698 Acidobacteria clone VC47 2.13.9.523 OTU 6 seqs prokMSA_id:16412 species clone 32-21 prokMSA_id:44004 17F9 prokMSA_id:75727 Holophaga sp. clone JG37-AG-149 prokMSA_id:76452 Acidobacteriales clone GR13 prokMSA_id:76977 Acidobacteriales clone GR14 prokMSA_id:84875 Acidobacteria clone BB-2-C9F 2.13.9.654 OTU 1 seq prokMSA_id:1791 clone S027 2.13.9.659 OTU 1 seq prokMSA_id:1793 unnamed organism 2.13.9.790 OTU 10 seqs prokMSA_id:1749 clone 11-25 prokMSA_id:1767 clone LB3-92 prokMSA_id:1768 clone LB3-30 prokMSA_id:47841 sludge H44 prokMSA_id:51292 sludge S6 prokMSA_id:56714 Acidobacterium group clone SBR1013 prokMSA_id:66557 clone SM1H07 prokMSA_id:75650 earthworm intestine clone wi14 prokMSA_id:86817 clone SM1H07 AY293402 prokMSA_id:88737 soil clone DS-249 AY289362 2.13.9.817 OTU 1 seq prokMSA_id:1772 unnamed organism 2.13.9.87 OTU 1 seq prokMSA_id:1776 clone 2951 2.13.9.872 OTU 1 seq prokMSA_id:1784 unnamed organism 2.13.9.874 OTU 1 seq prokMSA_id:1785 unnamed organism 2.13.9.884 OTU 1 seq prokMSA_id:1783 clone S023 2.13.9.916 OTU 1 seq prokMSA_id:1792 unnamed organism 2.13.9.929 OTU 1 seq prokMSA_id:1794 unnamed organism 2.13.9.938 OTU 1 seq prokMSA_id:1797 clone S111 2.13.9.948 OTU 1 seq prokMSA_id:1798 unnamed organism 2.13.11 ENVIRONMENTAL_CLONE_MB1228_GROUP 43 seqs 2.13.11.1047 OTU 1 seq prokMSA_id:1818 clone RB27 2.13.11.271 OTU 1 seq prokMSA_id:1808 clone ii3-36 2.13.11.273 OTU 1 seq prokMSA_id:1809 clone RFN4 2.13.11.306 OTU 1 seq prokMSA_id:1810 unnamed organism 2.13.11.314 OTU 1 seq prokMSA_id:1813 clone BPC015 2.13.11.315 OTU 1 seq prokMSA_id:1814 clone BPC066 2.13.11.321 OTU 1 seq prokMSA_id:1817 clone WCHA1-56 2.13.11.324 OTU 1 seq prokMSA_id:1819 clone BPC102 2.13.11.347 OTU 1 seq prokMSA_id:28670 sludge A22 2.13.11.350 OTU 1 seq prokMSA_id:85443 clone CCM15a 2.13.11.363 OTU 1 seq prokMSA_id:1821 unnamed organism 2.13.11.404 OTU 2 seqs prokMSA_id:35478 species clone mb3429 prokMSA_id:89660 Acidobacteria clone 23k22 genomic AY281352 2.13.11.431 OTU 1 seq prokMSA_id:59729 clone BB2_223 2.13.11.502 OTU 1 seq prokMSA_id:84610 clone CCM3a 2.13.11.517 OTU 1 seq prokMSA_id:46235 soil clone 576-2 2.13.11.53 OTU 1 seq prokMSA_id:31800 species clone iii1-15 2.13.11.622 OTU 1 seq prokMSA_id:80248 candidate division SPAM clone P2-8G 2.13.11.68 OTU 2 seqs prokMSA_id:32598 soil PBS-III-9 prokMSA_id:36561 soil PBS-III-27 2.13.11.706 OTU 14 seqs prokMSA_id:1807 clone DA008 prokMSA_id:1820 clone RB126. Z95716 prokMSA_id:28281 Agricultural soil clone SC-I-79 AJ252657 prokMSA_id:40242 Agricultural soil clone SC-I-21 AJ252624 prokMSA_id:43082 Agricultural soil clone SC-I-76 AJ252654 prokMSA_id:48016 species clone mb2431 prokMSA_id:74543 Agricultural soil clone SC-I-13 AJ252616 prokMSA_id:75545 Acidobacterium group clone JG36-TzT-99 prokMSA_id:75999 clone JG34-KF-113 prokMSA_id:76022 clone JG34-KF-337 prokMSA_id:76897 clone JG34-KF-257 prokMSA_id:78582 Holophaga sp. clone JG30a-KF-145 prokMSA_id:88876 soil clone DS-231 AY289378 prokMSA_id:93333 Acidobacteria clone JG36-GS-72 AJ582048 2.13.11.834 OTU 5 seqs prokMSA_id:1815 clone mb1228 prokMSA_id:17667 species clone mb2424 prokMSA_id:18226 species clone iii3-7 prokMSA_id:20725 soil clone 192-2 prokMSA_id:71241 mle1-25 2.13.11.867 OTU 2 seqs prokMSA_id:17129 sludge H3 prokMSA_id:45334 sludge A34 2.13.11.897 OTU 1 seq prokMSA_id:84221 clone CCM8b 2.13.11.91 OTU 1 seq prokMSA_id:53652 clone BA059 complete 2.13.12 ENVIRONMENTAL_CLONE_RB40_GROUP 42 seqs 2.13.12.100 OTU 1 seq prokMSA_id:76114 clone JG36-TzT-10 2.13.12.1014 OTU 1 seq prokMSA_id:52982 species clone ii3-15 2.13.12.102 OTU 1 seq prokMSA_id:51476 species clone mb2430 2.13.12.1040 OTU 1 seq prokMSA_id:46967 gold mine D15 2.13.12.1046 OTU 1 seq prokMSA_id:75514 clone JG34-KF-27 2.13.12.1049 OTU 1 seq prokMSA_id:1828 clone C112 2.13.12.13 OTU 1 seq prokMSA_id:76504 Acidobacterium group clone JG36-TzT-202 2.13.12.14 OTU 1 seq prokMSA_id:30759 NWCu002 2.13.12.176 OTU 1 seq prokMSA_id:75775 Holophaga sp. clone JG37-AG-112 2.13.12.209 OTU 1 seq prokMSA_id:76566 Holophaga sp. clone JG37-AG-29 2.13.12.267 OTU 1 seq prokMSA_id:77958 Fibrobacteres clone OF20 2.13.12.274 OTU 1 seq prokMSA_id:75044 Holophaga sp. clone JG37-AG-73 2.13.12.37 OTU 2 seqs prokMSA_id:76544 Holophaga sp. clone JG37-AG-99 prokMSA_id:83207 Acidobacteria clone BAC-14A1 AY214904 2.13.12.384 OTU 1 seq prokMSA_id:1829 unnamed organism 2.13.12.396 OTU 1 seq prokMSA_id:1833 clone DA023 2.13.12.403 OTU 1 seq prokMSA_id:1835 unnamed organism 2.13.12.415 OTU 1 seq prokMSA_id:49683 clone Tc67 2.13.12.450 OTU 1 seq prokMSA_id:1834 unnamed organism 2.13.12.500 OTU 6 seqs prokMSA_id:1827 clone C028 prokMSA_id:1854 clone RB24. Z95717 prokMSA_id:75589 Holophaga sp. clone JG37-AG-56 prokMSA_id:80372 Acidobacterium sp. clone CF7 prokMSA_id:82974 Acidobacteria clone WCB72 prokMSA_id:83511 Acidobacteria clone WCB122 2.13.12.548 OTU 1 seq prokMSA_id:76925 Holophaga sp. clone GuBH2-AD-16 2.13.12.569 OTU 1 seq prokMSA_id:23209 species clone ii3-12 2.13.12.582 OTU 1 seq prokMSA_id:65464 clone a13114 2.13.12.642 OTU 1 seq prokMSA_id:22391 species clone 32-10 2.13.12.66 OTU 1 seq prokMSA_id:75652 clone JG34-KF-135 2.13.12.674 OTU 2 seqs prokMSA_id:71357 Lake Michigan sediment LMBA20 and genes prokMSA_id:73082 Lake Michigan sediment LMBA20 2.13.12.877 OTU 1 seq prokMSA_id:1851 clone P65 2.13.12.879 OTU 1 seq prokMSA_id:1853 clone pB1-114 2.13.12.883 OTU 1 seq prokMSA_id:1856 clone P16 2.13.12.89 OTU 1 seq prokMSA_id:75679 Holophaga sp. clone JG37-AG-31 2.13.12.893 OTU 1 seq prokMSA_id:1857 clone RB40 2.13.12.896 OTU 1 seq prokMSA_id:1859 clone M19 2.13.12.964 OTU 1 seq prokMSA_id:77004 Holophaga sp. clone JG37-AG-145 2.13.12.987 OTU 1 seq prokMSA_id:76119 Acidobacterium group clone JG36-TzT-200 2.13.12.990 OTU 1 seq prokMSA_id:28512 #0319-7F19 2.13.12.994 OTU 1 seq prokMSA_id:77025 Holophaga sp. clone JG37-AG-117 2.14 FLS.SINUSARABICI_ASSEMBLAGE 18 seqs 2.14.1 OTU 10 seqs prokMSA_id:1867 str. UNSW2.6liv prokMSA_id:1868 str. HRI1cae. AF059187 prokMSA_id:1869 str. HRI3liv prokMSA_id:1871 str. UNSWRSp12. AF059190 prokMSA_id:1872 str. ASF 457 prokMSA_id:25453 clone p-2881-6C5 prokMSA_id:95638 Mucispirillum schaedleri strain HRI I17 AY387670 prokMSA_id:95739 Mucispirillum schaedleri strain UNSW I23 AY387671 prokMSA_id:96944 Mucispirillum schaedleri strain HRI I12 AY387669 prokMSA_id:97295 Mucispirillum schaedleri strain ABHU I23 AY387668 2.14.770 OTU 2 seqs prokMSA_id:1863 Deferribacter thermophilus str. BMA. U75602 prokMSA_id:70142 Deferribacter desulfuricans 2.14.797 OTU 2 seqs prokMSA_id:57548 Deferribacter sp. JR strain JR prokMSA_id:57551 Deferribacter sp. DR strain DR 2.14.918 OTU 1 seq prokMSA_id:1865 VC2.1 Bac9 complete 2.14.945 OTU 1 seq prokMSA_id:43329 Denitrovibrio acetophilus 2.14.962 OTU 1 seq prokMSA_id:1873 str. Lincoln Park 3 2.14.963 OTU 1 seq prokMSA_id:1875 Chrysiogenes arsenatis str. BAL-1 2.15 FLEXIBACTER-CYTOPHAGA-BACTEROIDES 1820 seqs 2.15.1 BACTEROIDES_AND_CYTOPHAGA 1329 seqs 2.15.1.2 BACTEROIDES_GROUP 656 seqs 2.15.1.2.1 RIK.MICROFUSUS_SUBGROUP 32 seqs 2.15.1.2.1.5253 OTU 1 seq prokMSA_id:80101 CFB group clone ML1218M-32 2.15.1.2.1.5256 OTU 1 seq prokMSA_id:77967 Bacteroidaceae clone:Rs-D38 2.15.1.2.1.5452 OTU 1 seq prokMSA_id:21213 clone p-1628-c5 2.15.1.2.1.5498 OTU 2 seqs prokMSA_id:1880 clone RC9 prokMSA_id:1881 clone RF2 2.15.1.2.1.5502 OTU 2 seqs prokMSA_id:22459 clone HuCA7 prokMSA_id:74420 adhufec73 2.15.1.2.1.5532 OTU 1 seq prokMSA_id:77751 CFB group clone:Rs-E47 2.15.1.2.1.5554 OTU 1 seq prokMSA_id:52441 clone p-2158-s959-3 2.15.1.2.1.5573 OTU 1 seq prokMSA_id:78222 CFB group clone:Rs-D44 2.15.1.2.1.5779 OTU 1 seq prokMSA_id:42845 clone RFLP 51E 2.15.1.2.1.5851 OTU 1 seq prokMSA_id:28923 equine intestinal sp. PW08 clone PW08 2.15.1.2.1.5889 OTU 1 seq prokMSA_id:77794 Bacteroidaceae clone:Rs-F73 2.15.1.2.1.5908 OTU 1 seq prokMSA_id:21326 clone TDC-S1:8 2.15.1.2.1.5982 OTU 1 seq prokMSA_id:70027 enrichment culture LET-13 clone II 2.15.1.2.1.6005 OTU 1 seq prokMSA_id:31264 equine intestinal sp. DL13 clone DL13 2.15.1.2.1.6025 OTU 1 seq prokMSA_id:38895 clone p-2202-s959-3 2.15.1.2.1.6032 OTU 2 seqs prokMSA_id:34085 clone HuCB23 AJ408997 prokMSA_id:61057 clone cadhufec17d09sav 2.15.1.2.1.6097 OTU 1 seq prokMSA_id:1878 clone vadinHA21 2.15.1.2.1.6096 OTU 1 seq prokMSA_id:19478 equine intestinal clone:YT14 2.15.1.2.1.6116 OTU 1 seq prokMSA_id:42791 equine intestinal clone:YT4 2.15.1.2.1.6134 OTU 1 seq prokMSA_id:1882 clone RF15 2.15.1.2.1.6133 OTU 1 seq prokMSA_id:20499 clone TDC-S5:22 2.15.1.2.1.6135 OTU 1 seq prokMSA_id:1883 clone RF28 2.15.1.2.1.6137 OTU 1 seq prokMSA_id:1884 clone WCHB1-29 2.15.1.2.1.6138 OTU 1 seq prokMSA_id:1885 clone vadinBC27 2.15.1.2.1.6139 OTU 1 seq prokMSA_id:1886 clone JW12 2.15.1.2.1.6173 OTU 2 seqs prokMSA_id:23709 Porphyromonas-like sp. oral clone DA064 prokMSA_id:55622 Bacteroidales oral clone MCE7_120 E3 2.15.1.2.1.6257 OTU 1 seq prokMSA_id:26475 equine intestinal sp. DW02 clone DW02 2.15.1.2.1.6277 OTU 1 seq prokMSA_id:28192 SHA-7 2.15.1.2.4 CY.FERMENTANS_SUBGROUP 63 seqs 2.15.1.2.4.5353 OTU 1 seq prokMSA_id:62390 Bacteroidetes clone FTLpost3 2.15.1.2.4.5361 OTU 1 seq prokMSA_id:27877 FukuN63 2.15.1.2.4.5410 OTU 1 seq prokMSA_id:66165 clone IIIB-28 2.15.1.2.4.5439 OTU 3 seqs prokMSA_id:56341 Bacteroidetes clone ML635J-40 prokMSA_id:79827 CFB group clone ML1228M-4 AF449769 prokMSA_id:80791 CFB group clone ML1228J-9 2.15.1.2.4.5443 OTU 1 seq prokMSA_id:27268 SHA-54 2.15.1.2.4.5475 OTU 2 seqs prokMSA_id:16567 SHA-25 prokMSA_id:52484 SHA-38 2.15.1.2.4.5501 OTU 1 seq prokMSA_id:21755 Cytophagales clone CD4D9 2.15.1.2.4.5511 OTU 1 seq prokMSA_id:78165 Cytophagales clone Hyd-B2-1 2.15.1.2.4.5534 OTU 1 seq prokMSA_id:49571 CFB group MERTZ_2CM_270 2.15.1.2.4.5540 OTU 1 seq prokMSA_id:49501 CFB group clone 8-1 2.15.1.2.4.5544 OTU 1 seq prokMSA_id:80197 clone KD3-17 2.15.1.2.4.5568 OTU 1 seq prokMSA_id:1899 clone WCHA2-47 2.15.1.2.4.5578 OTU 1 seq prokMSA_id:76499 bacteroidetes clone S15A-MN91 2.15.1.2.4.5650 OTU 1 seq prokMSA_id:49689 mRNA clone sipK20 2.15.1.2.4.5717 OTU 1 seq prokMSA_id:1900 clone WCHB1-69 2.15.1.2.4.5782 OTU 1 seq prokMSA_id:75791 Bacteroidetes Ko710 2.15.1.2.4.5783 OTU 1 seq prokMSA_id:62690 Bacteroidetes clone ML635J-15 2.15.1.2.4.5802 OTU 1 seq prokMSA_id:67037 clone SHA-94 2.15.1.2.4.5809 OTU 1 seq prokMSA_id:1902 clone EKHO-19 2.15.1.2.4.5808 OTU 1 seq prokMSA_id:1901 clone 1_60 2.15.1.2.4.5810 OTU 1 seq prokMSA_id:1903 clone BURTON-42 2.15.1.2.4.5814 OTU 1 seq prokMSA_id:1904 clone BURTON-5 2.15.1.2.4.5815 OTU 1 seq prokMSA_id:41113 CFB group MERTZ_2CM_347 2.15.1.2.4.5827 OTU 1 seq prokMSA_id:1906 clone vadinHA17 2.15.1.2.4.5830 OTU 1 seq prokMSA_id:1909 clone LD21 2.15.1.2.4.5850 OTU 2 seqs prokMSA_id:1898 clone WCHA1-01 prokMSA_id:26565 clone RFLP 92E 2.15.1.2.4.5854 OTU 1 seq prokMSA_id:1911 Cytophaga sp. str. BD1-16 2.15.1.2.4.5855 OTU 1 seq prokMSA_id:1912 Cytophaga sp. str. BD2-2 2.15.1.2.4.5856 OTU 1 seq prokMSA_id:1914 Cytophaga Cytophaga Sva1038 2.15.1.2.4.5874 OTU 1 seq prokMSA_id:57448 CFB group clone P. palm A 53 2.15.1.2.4.5880 OTU 1 seq prokMSA_id:82140 Bacteroidetes ANT9285 2.15.1.2.4.5892 OTU 2 seqs prokMSA_id:33956 from anoxic bulk soil clone BSV13 prokMSA_id:40718 from anoxic bulk soil clone BSV73 AJ229217 2.15.1.2.4.5890 OTU 1 seq prokMSA_id:82372 clone KD1-125 2.15.1.2.4.5900 OTU 2 seqs prokMSA_id:21344 isolate HOS19 Z88577 prokMSA_id:82792 Bacteroidetes clone 1A5 2.15.1.2.4.5921 OTU 1 seq prokMSA_id:34437 UASB_TL54 complete 2.15.1.2.4.5945 OTU 1 seq prokMSA_id:83262 Bacteroidetes clone LKC2.127-25 2.15.1.2.4.5947 OTU 1 seq prokMSA_id:57462 CFB group clone P. palm C/A 221 2.15.1.2.4.6038 OTU 1 seq prokMSA_id:46205 CFB group MERTZ_21CM_238 2.15.1.2.4.6046 OTU 1 seq prokMSA_id:66167 clone IIIB-1 2.15.1.2.4.6069 OTU 1 seq prokMSA_id:44257 E1-K9 2.15.1.2.4.6078 OTU 1 seq prokMSA_id:66189 clone IA-5 2.15.1.2.4.6101 OTU 1 seq prokMSA_id:26698 Cytophagales CE54 2.15.1.2.4.6114 OTU 1 seq prokMSA_id:26752 CFB group MERTZ_21CM_75 2.15.1.2.4.6155 OTU 1 seq prokMSA_id:1895 clone Phenol-4 2.15.1.2.4.6156 OTU 2 seqs prokMSA_id:21292 Cytophagales clone 26 prokMSA_id:40351 Cytophagales clone 17 2.15.1.2.4.6175 OTU 1 seq prokMSA_id:1897 clone WCHA1-14 2.15.1.2.4.6176 OTU 2 seqs prokMSA_id:42167 C1_B008 prokMSA_id:77623 clone Hyd89-65 2.15.1.2.4.6181 OTU 1 seq prokMSA_id:37588 CFB group MERTZ_2CM_232 2.15.1.2.4.6187 OTU 3 seqs prokMSA_id:20062 clone BA141 complete AF323769 prokMSA_id:40910 clone BA043 complete prokMSA_id:48692 clone BA029 complete AF323762 2.15.1.2.4.6226 OTU 1 seq prokMSA_id:81077 clone KD3-136 2.15.1.2.4.6233 OTU 1 seq prokMSA_id:59562 Bacteroidetes sp. oral clone FX069 2.15.1.2.4.6282 OTU 1 seq prokMSA_id:41715 UASB_TL13 complete 2.15.1.2.4.6317 OTU 1 seq prokMSA_id:75260 bacteroidetes clone S15A-MN128 2.15.1.2.5 ML.AGAROVORANS_SUBGROUP 8 seqs 2.15.1.2.5.5471 OTU 1 seq prokMSA_id:32729 clone P3IB-39 2.15.1.2.5.5865 OTU 1 seq prokMSA_id:1918 clone WCHB1-32 2.15.1.2.5.6278 OTU 6 seqs prokMSA_id:1905 clone SRang1.29. AF047618 prokMSA_id:1907 str. PB90-2. AJ229236 prokMSA_id:1908 str. XB45. AJ229237 prokMSA_id:51120 from anoxic bulk soil clone BSV85 AJ229229 prokMSA_id:81805 clone KD2-16 prokMSA_id:81865 clone KD2-19 AY218578 2.15.1.2.6 BAC.SPLANCHNICUS_SUBGROUP 3 seqs 2.15.1.2.6.5882 OTU 1 seq prokMSA_id:1920 clone TAYNAYA-26 2.15.1.2.6.5883 OTU 1 seq prokMSA_id:1921 clone SB-1 2.15.1.2.6.6076 OTU 1 seq prokMSA_id:73753 adhufec291 2.15.1.2.7 PPM.MACACAE_SUBGROUP 144 seqs 2.15.1.2.7.5295 OTU 1 seq prokMSA_id:72093 clone p-987-s962-5 2.15.1.2.7.5320 OTU 2 seqs prokMSA_id:1953 Bacteroides distasonis ATCC 8503 . M86695 prokMSA_id:85501 clone ABLCf15 2.15.1.2.7.5325 OTU 1 seq prokMSA_id:41295 KF-Gitt2-47 2.15.1.2.7.5343 OTU 1 seq prokMSA_id:1941 Porphyromonas cangingivalis VPB 4874 2.15.1.2.7.5349 OTU 1 seq prokMSA_id:78037 Bacteroidaceae clone:Rs-N74 2.15.1.2.7.5371 OTU 1 seq prokMSA_id:1950 Porphyromonas cansulci VPB 4875 2.15.1.2.7.5374 OTU 1 seq prokMSA_id:1952 Bacteroides merdae ATCC 43184 2.15.1.2.7.5373 OTU 1 seq prokMSA_id:1951 Porphyromonas canoris VPB 4882 2.15.1.2.7.5377 OTU 1 seq prokMSA_id:1955 clone RC16 2.15.1.2.7.5376 OTU 1 seq prokMSA_id:1954 clone RC2 2.15.1.2.7.5379 OTU 1 seq prokMSA_id:1957 clone RF36 2.15.1.2.7.5392 OTU 1 seq prokMSA_id:1958 clone RFN84 2.15.1.2.7.5393 OTU 1 seq prokMSA_id:1959 clone RFN96 2.15.1.2.7.5411 OTU 1 seq prokMSA_id:1960 clone adhufec77.25 2.15.1.2.7.5413 OTU 1 seq prokMSA_id:1963 clone BB23 2.15.1.2.7.5415 OTU 1 seq prokMSA_id:1969 clone RFN41 2.15.1.2.7.5414 OTU 1 seq prokMSA_id:1966 str. CDC Group DF-3 2.15.1.2.7.5429 OTU 1 seq prokMSA_id:28832 clone RFLP 2E 2.15.1.2.7.5467 OTU 4 seqs prokMSA_id:1942 clone RFN47. AB009203 prokMSA_id:1968 clone RFN12 prokMSA_id:1970 clone RFN43 prokMSA_id:1972 clone RFN86. AB009233 2.15.1.2.7.5469 OTU 1 seq prokMSA_id:1976 clone vadinHA28 2.15.1.2.7.5468 OTU 1 seq prokMSA_id:1975 clone vadinHA54 2.15.1.2.7.5496 OTU 1 seq prokMSA_id:32176 equine intestinal sp. PL40 clone PL40 2.15.1.2.7.5508 OTU 1 seq prokMSA_id:26171 equine intestinal YT7 2.15.1.2.7.5516 OTU 2 seqs prokMSA_id:18150 equine intestinal sp. CL14 clone CL14 prokMSA_id:28315 equine intestinal sp. ML14 clone ML14 2.15.1.2.7.5530 OTU 1 seq prokMSA_id:74492 Bacteroidetes clone BIci17 2.15.1.2.7.5537 OTU 2 seqs prokMSA_id:31170 clone p-2177-s959-3 prokMSA_id:35721 clone p-816-a5 2.15.1.2.7.5546 OTU 1 seq prokMSA_id:49573 TCE5 2.15.1.2.7.5557 OTU 1 seq prokMSA_id:51927 Bacteroides cf. forsythus oral clone BU063 2.15.1.2.7.5631 OTU 1 seq prokMSA_id:44678 Bacteroides sp. clone:BCf1-03 2.15.1.2.7.5634 OTU 1 seq prokMSA_id:86429 rumen clone BE25 2.15.1.2.7.5652 OTU 1 seq prokMSA_id:78288 Bacteroidaceae clone:Rs-D29 2.15.1.2.7.5664 OTU 1 seq prokMSA_id:78297 Bacteroidaceae clone:Rs-E83 2.15.1.2.7.5666 OTU 1 seq prokMSA_id:30407 equine intestinal sp. ML19 clone ML19 2.15.1.2.7.5676 OTU 1 seq prokMSA_id:37920 equine intestinal sp. CL08 clone CL08 2.15.1.2.7.5680 OTU 1 seq prokMSA_id:82191 Bacteroidaceae clone: Rs-106 2.15.1.2.7.5696 OTU 1 seq prokMSA_id:85590 rumen clone BE26 2.15.1.2.7.5713 OTU 10 seqs prokMSA_id:1931 Porphyromonas catoniae ATCC 51270 . X82823 prokMSA_id:18314 Porphyromonas sp. clone DS033 prokMSA_id:28623 Porphyromonas sp. oral clone BS045 prokMSA_id:30493 Porphyromonas sp. oral clone EP003 prokMSA_id:30507 Porphyromonas sp. oral clone BS077 prokMSA_id:72237 Porphyromonas sp. oral clone CW034 prokMSA_id:72284 Porphyromonas sp. oral clone BR037 prokMSA_id:72586 Porphyromonas sp. oral clone DP023 prokMSA_id:74406 Porphyromonas sp. oral clone AW032 prokMSA_id:94489 CFB group clone S15B-MN34 AJ583190 2.15.1.2.7.5719 OTU 1 seq prokMSA_id:41939 mRNA clone sipK57 2.15.1.2.7.5732 OTU 3 seqs prokMSA_id:1928 Bacteroides sp. str. sp4 prokMSA_id:1973 Bacteroides sp. str. sp14 prokMSA_id:66177 clone IIB-29 2.15.1.2.7.5752 OTU 2 seqs prokMSA_id:1943 clone RFN67 prokMSA_id:1971 clone RFN73 2.15.1.2.7.5761 OTU 1 seq prokMSA_id:46885 Bacteroides-like sp. oral clone AU126 2.15.1.2.7.5771 OTU 1 seq prokMSA_id:77581 CFB group clone:APe2_39 2.15.1.2.7.5781 OTU 1 seq prokMSA_id:27468 equine intestinal sp. MW16 clone MW16 2.15.1.2.7.5789 OTU 3 seqs prokMSA_id:84120 rumen clone BE29 prokMSA_id:84938 rumen clone BF25 prokMSA_id:84953 rumen clone BE18 2.15.1.2.7.5791 OTU 1 seq prokMSA_id:43915 Bacteroides sp. oral clone BU045 2.15.1.2.7.5800 OTU 7 seqs prokMSA_id:1938 str. PUS3.23 prokMSA_id:28004 Porphyromonas sp. oral clone F016 prokMSA_id:29149 Porphyromonas sp. oral clone AJ002 prokMSA_id:51233 Porphyromonas sp. oral clone BB134 AY005068 prokMSA_id:84092 Porphyromonas endodontalis ATCC 35406 prokMSA_id:84660 Porphyromonas sp. oral clone P4GB_100 P2 prokMSA_id:84799 Porphyromonas sp. oral clone P2PB_52 P1 2.15.1.2.7.5804 OTU 1 seq prokMSA_id:40523 clone p-262-o5 2.15.1.2.7.5806 OTU 2 seqs prokMSA_id:74495 adhufec55 prokMSA_id:81083 Bacteroides merdae 2.15.1.2.7.5817 OTU 1 seq prokMSA_id:77707 Bacteroidaceae clone:Rs-N56 2.15.1.2.7.5852 OTU 1 seq prokMSA_id:38316 clone:BCf7-02 2.15.1.2.7.5887 OTU 1 seq prokMSA_id:1923 clone RF17 2.15.1.2.7.5907 OTU 6 seqs prokMSA_id:1924 clone RFN37 prokMSA_id:1925 clone RFN50 prokMSA_id:1926 clone RFN6 prokMSA_id:1927 clone RFN79 prokMSA_id:17505 fiber-attaching rumen clone:SY26 prokMSA_id:84958 rumen clone BE36 2.15.1.2.7.5932 OTU 1 seq prokMSA_id:77773 Bacteroidaceae clone:Rs-P41 2.15.1.2.7.5943 OTU 32 seqs prokMSA_id:1948 Porphyromonas gingivalis ATCC 33277 . L16492 prokMSA_id:1962 Porphyromonas gingivalis DSM 20709 prokMSA_id:17881 Porphyromonas gingivalis prokMSA_id:18895 Porphyromonas gingivalis strain 27-PGI AF414817 prokMSA_id:26186 Porphyromonas gulae strain Manga 1.41 AF285869 prokMSA_id:31120 Porphyromonas gingivalis strain 30-PGI AF414820 prokMSA_id:32807 Porphyromonas gulae strain chien 4.2 prokMSA_id:33231 Porphyromonas gingivalis strain 26-PGI AF414816 prokMSA_id:33300 Porphyromonas gingivalis strain ATCC 33277 prokMSA_id:33338 Porphyromonas gingivalis strain:SUNY1021 prokMSA_id:34895 Porphyromonas gingivalis strain 1-PGI AF414810 prokMSA_id:35758 Porphyromonas gingivalis strain 40-PGI AF414813 prokMSA_id:35989 Porphyromonas gulae prokMSA_id:36451 Porphyromonas gingivalis strain 25-PGI AF414815 prokMSA_id:39994 Porphyromonas gulae strain ours 3.1 prokMSA_id:42789 Porphyromonas gingivalis strain 28-PGI prokMSA_id:42871 Porphyromonas gulae prokMSA_id:42887 Porphyromonas gingivalis strain 2-PGI prokMSA_id:44500 Porphyromonas gingivalis strain 42-PGI prokMSA_id:46900 Porphyromonas gingivalis strain:A7A1-28 prokMSA_id:47786 Porphyromonas gulae strain B 243 prokMSA_id:49110 Porphyromonas gingivalis strain:W83 prokMSA_id:49606 Porphyromonas gingivalis AF285870 prokMSA_id:53253 Porphyromonas gingivalis strain:ATCC33277 prokMSA_id:71486 Porphyromonas gingivalis strain 29-PGI AF414819 prokMSA_id:71638 Porphyromonas gulae strain chat 3.1 prokMSA_id:74161 Porphyromonas gingivalis strain 3-PGI AF414812 prokMSA_id:93277 Porphyromonas gingivalis W83 section 8 of 8 of the complete prokMSA_id:93513 Porphyromonas gingivalis W83 complete genome NC_002950 prokMSA_id:93631 Porphyromonas gingivalis W83 section 1 of 8 of the complete prokMSA_id:93824 Porphyromonas gingivalis W83 section 5 of 8 of the complete prokMSA_id:93948 Porphyromonas gingivalis W83 section 6 of 8 of the complete 2.15.1.2.7.5952 OTU 1 seq prokMSA_id:28974 clone p-1862-c3 2.15.1.2.7.5961 OTU 2 seqs prokMSA_id:55494 clone IA-16 prokMSA_id:79914 Bacteroidetes clone GalB60 2.15.1.2.7.5963 OTU 2 seqs prokMSA_id:1929 Bacteroides ASF519 str. ASF 519 prokMSA_id:69900 mpn-isolate group 6 2.15.1.2.7.5990 OTU 1 seq prokMSA_id:19082 clone:BCf5-08 2.15.1.2.7.5998 OTU 1 seq prokMSA_id:84869 rumen clone BS9 2.15.1.2.7.6009 OTU 1 seq prokMSA_id:77928 Bacteroidaceae clone:Rs-J02 2.15.1.2.7.6022 OTU 1 seq prokMSA_id:45315 clone L7-16 2.15.1.2.7.6088 OTU 1 seq prokMSA_id:31626 Bacteroidales str. WB4 2.15.1.2.7.6117 OTU 1 seq prokMSA_id:41054 clone RFLP 40E 2.15.1.2.7.6214 OTU 12 seqs prokMSA_id:1922 Bacteroides forsythus FDC 331 prokMSA_id:22635 Bacteroides forsythus strain:Sai5 prokMSA_id:34893 Bacteroides forsythus strain:KM3 prokMSA_id:36831 Bacteroides forsythus strain:FJ1 prokMSA_id:38366 Bacteroides forsythus strain:HG3 prokMSA_id:38992 Bacteroides forsythus strain:Ko3 prokMSA_id:40709 Bacteroides forsythus strain:G9 prokMSA_id:40924 Bacteroides forsythus strain:KS16 AB053944 prokMSA_id:46214 Bacteroides forsythus strain:L7 prokMSA_id:46574 Bacteroides forsythus strain:TR6 AB053947 prokMSA_id:49167 Bacteroides forsythus strain:HA3 prokMSA_id:51467 Bacteroides forsythus strain:ATCC43037 2.15.1.2.7.6263 OTU 1 seq prokMSA_id:84193 rumen clone BE20 2.15.1.2.7.6262 OTU 1 seq prokMSA_id:40059 ckncm156-F1M.2H5 2.15.1.2.7.6280 OTU 1 seq prokMSA_id:36893 AA17 2.15.1.2.7.6288 OTU 1 seq prokMSA_id:26510 ckncm163-F3M.1B4 2.15.1.2.8 BAC.FRAGILIS_SUBGROUP 106 seqs 2.15.1.2.8.5264 OTU 1 seq prokMSA_id:43829 clone L7-17 2.15.1.2.8.5275 OTU 1 seq prokMSA_id:73683 Bacteroides sp. 253c 2.15.1.2.8.5285 OTU 1 seq prokMSA_id:2030 Bacteroides stercoris ATCC 43183 2.15.1.2.8.5299 OTU 1 seq prokMSA_id:2033 clone adhufec12.25 2.15.1.2.8.5298 OTU 1 seq prokMSA_id:29526 TAYNAYA-27 2.15.1.2.8.5303 OTU 1 seq prokMSA_id:2036 clone RFN2 2.15.1.2.8.5302 OTU 1 seq prokMSA_id:2034 clone JW16 2.15.1.2.8.5306 OTU 1 seq prokMSA_id:2037 clone RFN46 2.15.1.2.8.5326 OTU 2 seqs prokMSA_id:2043 clone adhufec26.25 prokMSA_id:24383 adhufec151 AF132239 2.15.1.2.8.5329 OTU 1 seq prokMSA_id:2045 Bacteroides acidofaciens 2.15.1.2.8.5360 OTU 1 seq prokMSA_id:73937 clone p-1273-a5 2.15.1.2.8.5390 OTU 1 seq prokMSA_id:24616 fiber-attaching rumen clone:SY30 2.15.1.2.8.5424 OTU 2 seqs prokMSA_id:2035 Bacteroides eggerthii NCTC 11185 prokMSA_id:70488 Bacteroides eggerthii 2.15.1.2.8.5425 OTU 1 seq prokMSA_id:37022 Bacteroides ovatus 2.15.1.2.8.5441 OTU 3 seqs prokMSA_id:33268 clone HuCB3 prokMSA_id:45060 clone HuCA9 prokMSA_id:52020 clone HuCA36 2.15.1.2.8.5450 OTU 2 seqs prokMSA_id:1988 Bacteroides sp. str. BV-1 prokMSA_id:50342 clone HuCA21 2.15.1.2.8.5454 OTU 5 seqs prokMSA_id:25154 Bacteroidetes clone BIfciii40 AJ318126 prokMSA_id:47890 Dysgonomonas gadei strain 1145589 Y18530 prokMSA_id:78080 Bacteroidaceae clone:Rs-M21 prokMSA_id:81335 Bacteroidaceae clone: Rs-008 prokMSA_id:91816 Dysgonomonas shahii strain CCUG 43457 AJ319867 2.15.1.2.8.5474 OTU 3 seqs prokMSA_id:1992 Bacteroides acidofaciens str. A24 prokMSA_id:1994 Bacteroides acidofaciens str. A31 prokMSA_id:1998 Bacteroides acidofaciens str. A43 2.15.1.2.8.5489 OTU 2 seqs prokMSA_id:1986 Bacteroides caccae ATCC 43185 prokMSA_id:74577 adhufec51 AF132273 2.15.1.2.8.5510 OTU 1 seq prokMSA_id:77508 26-4b2 2.15.1.2.8.5551 OTU 4 seqs prokMSA_id:2020 Bacteroides uniformis ATCC 8492 . L16486 prokMSA_id:2024 Bacteroides AR20 str. AR20. AF139524 prokMSA_id:28973 adhufec153 prokMSA_id:47157 Bacteroides uniformis 2.15.1.2.8.5556 OTU 1 seq prokMSA_id:34809 rumen 4C0d-8 2.15.1.2.8.5577 OTU 2 seqs prokMSA_id:41973 clone p-1018-a5 prokMSA_id:52212 clone p-1091-a5 2.15.1.2.8.5593 OTU 1 seq prokMSA_id:79483 clone M2 2.15.1.2.8.5596 OTU 3 seqs prokMSA_id:30861 Bacteroides sp. 139 prokMSA_id:46819 Swine fecal FPC111 prokMSA_id:89392 Bacteroides sp. 111 AJ514255 2.15.1.2.8.5621 OTU 1 seq prokMSA_id:82138 MTCE-T2 3G 2.15.1.2.8.5627 OTU 1 seq prokMSA_id:43091 adhufec303 2.15.1.2.8.5651 OTU 1 seq prokMSA_id:78342 Bacteroidaceae clone:Rs-F14 2.15.1.2.8.5698 OTU 1 seq prokMSA_id:2044 clone 12-129 2.15.1.2.8.5759 OTU 1 seq prokMSA_id:52362 E1-K8 2.15.1.2.8.5768 OTU 1 seq prokMSA_id:73517 Prevotella sp. oral clone BU035 2.15.1.2.8.5823 OTU 1 seq prokMSA_id:26888 clone p-218-o5 2.15.1.2.8.5837 OTU 1 seq prokMSA_id:71331 adhufec355 2.15.1.2.8.5844 OTU 6 seqs prokMSA_id:1990 Bacteroides acidofaciens prokMSA_id:1991 Bacteroides acidofaciens str. A1 prokMSA_id:1993 Bacteroides acidofaciens str. A29 prokMSA_id:1995 Bacteroides acidofaciens str. A32 prokMSA_id:1996 Bacteroides acidofaciens str. A37 prokMSA_id:1997 Bacteroides acidofaciens str. A40 2.15.1.2.8.5885 OTU 1 seq prokMSA_id:25165 clone HuCA34 2.15.1.2.8.5897 OTU 1 seq prokMSA_id:45921 clone p-240-o5 2.15.1.2.8.5950 OTU 1 seq prokMSA_id:44290 human fecal HF10 2.15.1.2.8.5979 OTU 22 seqs prokMSA_id:2000 Bacteroides fragilis prokMSA_id:2001 Bacteroides fragilis ATCC 25285 prokMSA_id:2003 Bacteroides fragilis ATCC 25285 prokMSA_id:2004 Bacteroides fragilis str. Bfr189. X83944 prokMSA_id:2005 Bacteroides fragilis str. Bfr901 prokMSA_id:2006 Bacteroides fragilis str. Bfr920. X83946 prokMSA_id:2007 Bacteroides fragilis str. KSB1486. X83947 prokMSA_id:2008 Bacteroides fragilis str. 2393 prokMSA_id:2009 Bacteroides fragilis str. 4117 prokMSA_id:2010 Bacteroides fragilis str. 4225 prokMSA_id:2011 Bacteroides fragilis str. AIP 638 prokMSA_id:2012 Bacteroides fragilis str. 790 prokMSA_id:2013 Bacteroides fragilis str. 2991 prokMSA_id:2014 Bacteroides fragilis str. 6791. X83939 prokMSA_id:2015 Bacteroides fragilis str. 12491. X83940 prokMSA_id:2016 Bacteroides fragilis str. TAL3636 prokMSA_id:2017 Bacteroides fragilis str. B119 prokMSA_id:2018 Bacteroides fragilis str. Bfr81. X83943 prokMSA_id:2019 Bacteroides CIP103040 str. 040 CIP 103 prokMSA_id:51984 clone HuCA33 prokMSA_id:52643 Bacteroides fragilis prokMSA_id:71002 mpn-isolate group 7 2.15.1.2.8.5980 OTU 1 seq prokMSA_id:48647 str. 31285 2.15.1.2.8.6012 OTU 1 seq prokMSA_id:25137 clone L11-6 2.15.1.2.8.6060 OTU 2 seqs prokMSA_id:47293 Bacteroidetes clone BIsii27 AJ318179 prokMSA_id:73751 Bacteroides sp. 265d 2.15.1.2.8.6064 OTU 13 seqs prokMSA_id:1982 Bacteroides thetaiotaomicron M58763 prokMSA_id:1983 Bacteroides AR29 str. AR29 prokMSA_id:46476 Bacteroides thetaiotaomicron prokMSA_id:57995 clone:G-56 AB094183 prokMSA_id:71812 clone cadhufec17h05sav AF530346 prokMSA_id:72562 adhufec23 AF132251 prokMSA_id:82797 Bacteroides sp. 'Smarlab BioMol-2301151' prokMSA_id:83324 Bacteroides thetaiotaomicron VPI-5482 section 6 of 21 of the prokMSA_id:83868 Bacteroides thetaiotaomicron VPI-5482 section 17 of 21 of th prokMSA_id:84161 Bacteroides thetaiotaomicron VPI-5482 section 12 of 21 of th prokMSA_id:85849 Bacteroides thetaiotaomicron VPI-5482 section 8 of 21 of the prokMSA_id:86008 Bacteroides thetaiotaomicron VPI-5482 section 11 of 21 of th prokMSA_id:86458 Bacteroides thetaiotaomicron VPI-5482 complete genome NC_004 2.15.1.2.8.6066 OTU 1 seq prokMSA_id:83456 Prevotellaceae P4P_62 P1 2.15.1.2.8.6204 OTU 1 seq prokMSA_id:50289 equine intestinal sp. PW13 clone PW13 2.15.1.2.8.6227 OTU 1 seq prokMSA_id:2002 clone BURTON-6 2.15.1.2.8.6307 OTU 1 seq prokMSA_id:49461 clone p-4305-4Wa3 2.15.1.2.8.6309 OTU 2 seqs prokMSA_id:44276 adhufec367 prokMSA_id:60914 84634 2.15.1.2.8.6326 OTU 1 seq prokMSA_id:72466 Bacteroides sp. 0103 800 strain 0103 800 2.15.1.2.9 PRV.TANNERAE_SUBGROUP 10 seqs 2.15.1.2.9.5684 OTU 1 seq prokMSA_id:38227 E1-K15 2.15.1.2.9.5718 OTU 9 seqs prokMSA_id:2046 Prevotella tannerae ATCC 51259 prokMSA_id:2047 str. PUS3.42 prokMSA_id:28563 Prevotella tannerae strain 29-1 complete prokMSA_id:30384 Prevotella tannerae strain 131-9-1 complete prokMSA_id:35980 Prevotella tannerae strain 83-10-2 complete prokMSA_id:37055 Prevotella tannerae strain 93-1-2 complete prokMSA_id:38368 Prevotella tannerae strain 89-9-1 complete prokMSA_id:63115 clone MB-A2-118 prokMSA_id:72923 E1-K12 2.15.1.2.10 PRV.BRYANTII_SUBGROUP 16 seqs 2.15.1.2.10.5338 OTU 1 seq prokMSA_id:47181 clone p-1005-a5 2.15.1.2.10.5403 OTU 7 seqs prokMSA_id:2048 Prevotella bryantii str. B14 DSM 11371 . AJ006457 prokMSA_id:2049 clone RF23 prokMSA_id:2050 clone 12-4 prokMSA_id:23685 rumen 5C3d-4 prokMSA_id:31856 Prevotella bryantii AF396925 prokMSA_id:39885 rumen 3C3d-16 prokMSA_id:52763 rumen 5C3d-8 2.15.1.2.10.5646 OTU 1 seq prokMSA_id:49682 clone p-219-o5 2.15.1.2.10.5972 OTU 2 seqs prokMSA_id:2051 clone 12-16 prokMSA_id:2052 clone 12-102 2.15.1.2.10.6118 OTU 1 seq prokMSA_id:2054 clone 30-13 2.15.1.2.10.6119 OTU 1 seq prokMSA_id:2055 clone 30-14 2.15.1.2.10.6120 OTU 1 seq prokMSA_id:2056 clone 30-21 2.15.1.2.10.6180 OTU 1 seq prokMSA_id:42406 clone p-185-o5 2.15.1.2.10.6232 OTU 1 seq prokMSA_id:31029 equine intestinal sp. CL22 clone CL22 2.15.1.2.11 PRV.RUMINICOLA_SUBGROUP 148 seqs 2.15.1.2.11.5245 OTU 1 seq prokMSA_id:2164 clone 30-38 2.15.1.2.11.5246 OTU 1 seq prokMSA_id:2167 clone 30-46 2.15.1.2.11.5259 OTU 3 seqs prokMSA_id:2065 clone RCP19 prokMSA_id:2096 clone 12-66 prokMSA_id:18443 rumen 3C3d-1 2.15.1.2.11.5262 OTU 1 seq prokMSA_id:70217 mpn-isolate group 2 2.15.1.2.11.5290 OTU 1 seq prokMSA_id:2170 Prevotella aff. ruminicola Tc2-24 str. Tc2-24 2.15.1.2.11.5323 OTU 1 seq prokMSA_id:16433 fiber-attaching rumen clone:SY29 2.15.1.2.11.5386 OTU 3 seqs prokMSA_id:2136 clone 12-1. AF018452 prokMSA_id:2162 clone 30-34 prokMSA_id:2163 clone 30-35 2.15.1.2.11.5398 OTU 24 seqs prokMSA_id:2064 clone RC40 prokMSA_id:2067 clone RF19 prokMSA_id:2070 clone RF40 prokMSA_id:2071 Prevotella ruminicola str. PF20-3 prokMSA_id:2072 clone RFN21 prokMSA_id:2078 clone RFN68 prokMSA_id:2079 clone RFN78 prokMSA_id:2084 Prevotella sp. str. sp24 prokMSA_id:2085 Prevotella sp. str. sp34 prokMSA_id:2086 Prevotella sp. str. sp28 prokMSA_id:2087 Prevotella sp. str. sp158 prokMSA_id:2088 Prevotella sp. str. sp20 prokMSA_id:2089 Prevotella ruminicola str. T31 prokMSA_id:2090 Prevotella ruminicola subsp. ruminicola prokMSA_id:41037 rumen 4C3d-18 prokMSA_id:49294 rumen 4C3d-1 prokMSA_id:52673 rumen 4C3d-15 prokMSA_id:82806 rumen clone BF37 prokMSA_id:83302 rumen clone BE27 prokMSA_id:84681 rumen clone BF19 prokMSA_id:85456 rumen clone BE3 prokMSA_id:85968 rumen clone BF21 prokMSA_id:86283 rumen clone BE11 prokMSA_id:86611 rumen clone BF15 2.15.1.2.11.5422 OTU 2 seqs prokMSA_id:2128 clone RFN9 prokMSA_id:83419 rumen clone BF17 2.15.1.2.11.5437 OTU 2 seqs prokMSA_id:82967 rumen clone BF36 prokMSA_id:86520 rumen clone BE1 2.15.1.2.11.5528 OTU 2 seqs prokMSA_id:2127 clone RFN76 prokMSA_id:2130 clone RFN92 2.15.1.2.11.5539 OTU 1 seq prokMSA_id:2081 clone RFN90 2.15.1.2.11.5603 OTU 2 seqs prokMSA_id:2066 clone RC29 prokMSA_id:2075 clone RFN36 2.15.1.2.11.5608 OTU 2 seqs prokMSA_id:2146 clone 12-118 prokMSA_id:2165 clone 30-39 2.15.1.2.11.5656 OTU 1 seq prokMSA_id:83963 rumen clone BE19 2.15.1.2.11.5668 OTU 1 seq prokMSA_id:84919 rumen clone BE4 2.15.1.2.11.5679 OTU 1 seq prokMSA_id:2103 clone 30-15 2.15.1.2.11.5686 OTU 2 seqs prokMSA_id:2068 clone RF25 prokMSA_id:84308 rumen clone BE35 2.15.1.2.11.5691 OTU 1 seq prokMSA_id:2105 clone 30-19 2.15.1.2.11.5692 OTU 1 seq prokMSA_id:2107 clone 30-37 2.15.1.2.11.5693 OTU 1 seq prokMSA_id:2108 clone 30-43 2.15.1.2.11.5694 OTU 1 seq prokMSA_id:2109 clone 30-44 2.15.1.2.11.5700 OTU 1 seq prokMSA_id:82767 rumen clone BF38 2.15.1.2.11.5709 OTU 1 seq prokMSA_id:2110 clone 30-45 2.15.1.2.11.5711 OTU 1 seq prokMSA_id:2113 clone RC14 2.15.1.2.11.5710 OTU 1 seq prokMSA_id:2112 clone RC11 2.15.1.2.11.5716 OTU 2 seqs prokMSA_id:84248 rumen clone BF40 prokMSA_id:86050 rumen clone BE23 2.15.1.2.11.5721 OTU 1 seq prokMSA_id:2115 clone RC24 2.15.1.2.11.5723 OTU 1 seq prokMSA_id:2117 clone RF20 2.15.1.2.11.5725 OTU 1 seq prokMSA_id:2118 clone RF27 2.15.1.2.11.5746 OTU 2 seqs prokMSA_id:2121 clone RFN1 prokMSA_id:2124 clone RFN19. AB009178 2.15.1.2.11.5760 OTU 1 seq prokMSA_id:19299 fiber-attaching rumen SY11 2.15.1.2.11.5762 OTU 1 seq prokMSA_id:43544 clone p-2181-s959-3 2.15.1.2.11.5764 OTU 1 seq prokMSA_id:2125 clone RFN40 2.15.1.2.11.5765 OTU 2 seqs prokMSA_id:2122 clone RFN11. AB009170 prokMSA_id:2126 clone RFN75 2.15.1.2.11.5767 OTU 1 seq prokMSA_id:2129 clone RFN91 2.15.1.2.11.5803 OTU 5 seqs prokMSA_id:2073 clone RFN26 prokMSA_id:2076 clone RFN38 prokMSA_id:2077 clone RFN5 prokMSA_id:2082 clone RFN93 prokMSA_id:2083 clone RFN94 2.15.1.2.11.5820 OTU 1 seq prokMSA_id:84178 rumen clone BF24 2.15.1.2.11.5834 OTU 2 seqs prokMSA_id:83192 rumen clone BF29 prokMSA_id:83664 rumen clone BE6 2.15.1.2.11.5916 OTU 1 seq prokMSA_id:83344 rumen clone BE14 2.15.1.2.11.5917 OTU 1 seq prokMSA_id:46597 rumen 6C3d-16 2.15.1.2.11.5920 OTU 1 seq prokMSA_id:17450 rumen 4C3d-10 2.15.1.2.11.5926 OTU 10 seqs prokMSA_id:83241 rumen clone BE30 prokMSA_id:84373 rumen clone BF31 prokMSA_id:84424 rumen clone BE10 prokMSA_id:84905 rumen clone BE22 prokMSA_id:85274 rumen clone BF23 prokMSA_id:85648 rumen clone BE21 prokMSA_id:85887 rumen clone BF22 prokMSA_id:85996 rumen clone BF28 prokMSA_id:85999 rumen clone BE17 prokMSA_id:86234 rumen clone BE32 2.15.1.2.11.5927 OTU 1 seq prokMSA_id:2091 clone JW1 2.15.1.2.11.5976 OTU 2 seqs prokMSA_id:31669 rumen 4C3d-5 prokMSA_id:85859 rumen clone BF20 2.15.1.2.11.5985 OTU 1 seq prokMSA_id:43707 rumen 6C3d-25 2.15.1.2.11.5986 OTU 1 seq prokMSA_id:69910 Prevotella ruminicola strain TC2-28 2.15.1.2.11.6011 OTU 5 seqs prokMSA_id:83662 rumen clone BE5 prokMSA_id:83826 rumen clone BF27 prokMSA_id:84270 rumen clone BE12 AY244929 prokMSA_id:84471 rumen clone BE9 prokMSA_id:84913 rumen clone BF33 2.15.1.2.11.6063 OTU 1 seq prokMSA_id:2120 clone RFP6 2.15.1.2.11.6062 OTU 2 seqs prokMSA_id:25004 clone p-281-a3 prokMSA_id:47554 clone p-828-a5 AF371888 2.15.1.2.11.6091 OTU 1 seq prokMSA_id:82695 rumen clone BE34 2.15.1.2.11.6092 OTU 2 seqs prokMSA_id:2119 clone RF31. AF001763 prokMSA_id:85507 rumen clone BF26 2.15.1.2.11.6107 OTU 1 seq prokMSA_id:2154 clone 30-23 2.15.1.2.11.6109 OTU 1 seq prokMSA_id:2159 clone 30-31 2.15.1.2.11.6110 OTU 2 seqs prokMSA_id:2102 clone 30-11. AF018508 prokMSA_id:82965 rumen clone BE28 2.15.1.2.11.6127 OTU 2 seqs prokMSA_id:2116 clone RF18 prokMSA_id:2123 clone RFN15 2.15.1.2.11.6152 OTU 1 seq prokMSA_id:2069 clone RF37 2.15.1.2.11.6182 OTU 1 seq prokMSA_id:2074 clone RFN29 2.15.1.2.11.6193 OTU 1 seq prokMSA_id:2131 clone JW2 2.15.1.2.11.6198 OTU 1 seq prokMSA_id:2132 clone JW7 2.15.1.2.11.6202 OTU 1 seq prokMSA_id:2134 clone JW10 2.15.1.2.11.6201 OTU 1 seq prokMSA_id:2133 clone JW9 2.15.1.2.11.6212 OTU 1 seq prokMSA_id:82971 rumen clone BE8 2.15.1.2.11.6210 OTU 1 seq prokMSA_id:2137 clone 12-12 2.15.1.2.11.6213 OTU 1 seq prokMSA_id:2138 clone 12-39 2.15.1.2.11.6216 OTU 1 seq prokMSA_id:2139 clone 12-46 2.15.1.2.11.6223 OTU 1 seq prokMSA_id:2080 clone RFN89 2.15.1.2.11.6234 OTU 1 seq prokMSA_id:2140 clone 12-51 2.15.1.2.11.6236 OTU 1 seq prokMSA_id:2147 clone 12-125 2.15.1.2.11.6235 OTU 1 seq prokMSA_id:2144 clone 12-112 2.15.1.2.11.6237 OTU 1 seq prokMSA_id:2148 clone 12-130 2.15.1.2.11.6238 OTU 1 seq prokMSA_id:2149 clone 30-3 2.15.1.2.11.6240 OTU 1 seq prokMSA_id:71561 clone p-1864-s962-3 2.15.1.2.11.6260 OTU 1 seq prokMSA_id:2151 clone 30-10 2.15.1.2.11.6259 OTU 1 seq prokMSA_id:2150 clone 30-6 2.15.1.2.11.6264 OTU 1 seq prokMSA_id:2092 clone JW20 2.15.1.2.11.6266 OTU 1 seq prokMSA_id:2093 clone JW31 2.15.1.2.11.6271 OTU 1 seq prokMSA_id:85799 rumen clone BF18 2.15.1.2.11.6283 OTU 1 seq prokMSA_id:24907 clone p-2190-s959-3 2.15.1.2.11.6286 OTU 1 seq prokMSA_id:2152 clone 30-17 2.15.1.2.11.6287 OTU 1 seq prokMSA_id:2153 clone 30-18 2.15.1.2.11.6290 OTU 1 seq prokMSA_id:2157 clone 30-29 2.15.1.2.11.6292 OTU 1 seq prokMSA_id:2158 clone 30-30 2.15.1.2.11.6291 OTU 1 seq prokMSA_id:2094 clone 12-15 2.15.1.2.11.6294 OTU 1 seq prokMSA_id:2098 clone 12-127 2.15.1.2.11.6293 OTU 1 seq prokMSA_id:2095 clone 12-50 2.15.1.2.11.6295 OTU 1 seq prokMSA_id:2099 clone 12-132 2.15.1.2.11.6308 OTU 1 seq prokMSA_id:72956 rumen 12-111 2.15.1.2.11.6316 OTU 1 seq prokMSA_id:2161 clone 30-33 2.15.1.2.12 PRV.BUCCAE_SUBGROUP 16 seqs 2.15.1.2.12.5291 OTU 1 seq prokMSA_id:2172 clone RC17 2.15.1.2.12.5292 OTU 1 seq prokMSA_id:2173 Prevotella buccae str. 938.11 ATCC 33690 2.15.1.2.12.5293 OTU 1 seq prokMSA_id:2174 clone RFN35 2.15.1.2.12.5408 OTU 2 seqs prokMSA_id:2176 Prevotella dentalis str. ES2645 DSM 3688 prokMSA_id:2177 Hallella seregens ATCC 51272 2.15.1.2.12.5460 OTU 1 seq prokMSA_id:38278 clone F8 2.15.1.2.12.5702 OTU 1 seq prokMSA_id:2179 clone JW15 2.15.1.2.12.5720 OTU 1 seq prokMSA_id:68339 Prevotella sp. E9_34 E2 oral isolate 2.15.1.2.12.5724 OTU 1 seq prokMSA_id:2181 Prevotella enoeca ATCC 51261 2.15.1.2.12.5812 OTU 1 seq prokMSA_id:28413 clone p-1310-a5 2.15.1.2.12.5860 OTU 1 seq prokMSA_id:46566 clone p-863-a5 2.15.1.2.12.5966 OTU 1 seq prokMSA_id:26715 isolate HuCC28 2.15.1.2.12.5974 OTU 2 seqs prokMSA_id:28097 equine intestinal sp. ML02 clone ML02 prokMSA_id:36936 equine intestinal sp. CW07 clone CW07 2.15.1.2.12.6095 OTU 1 seq prokMSA_id:22466 clone p-1297-a5 2.15.1.2.12.6169 OTU 1 seq prokMSA_id:73255 Prevotella sp. oral clone CY006 2.15.1.2.13 PRV.NIGRESCENS_SUBGROUP 110 seqs 2.15.1.2.13.5249 OTU 3 seqs prokMSA_id:71102 Prevotella sp. oral clone AH005 prokMSA_id:72964 Prevotella sp. oral clone AO036 prokMSA_id:88701 Prevotella denticola AY323524 2.15.1.2.13.5265 OTU 1 seq prokMSA_id:46017 clone p-408-o3 2.15.1.2.13.5331 OTU 1 seq prokMSA_id:47101 Prevotella sp. oral clone DO022 2.15.1.2.13.5342 OTU 1 seq prokMSA_id:51061 E1-K13 2.15.1.2.13.5388 OTU 2 seqs prokMSA_id:2201 clone RFN64 prokMSA_id:85059 rumen clone BF16 2.15.1.2.13.5406 OTU 8 seqs prokMSA_id:2191 clone 12-7 prokMSA_id:2203 clone 12-44. AF018466 prokMSA_id:2205 clone 12-71 prokMSA_id:2207 clone 12-106 prokMSA_id:2209 clone 12-114 prokMSA_id:2211 clone 30-8. AF018505 prokMSA_id:2214 clone 30-40 prokMSA_id:41434 rumen 12-64 AF018474 2.15.1.2.13.5426 OTU 1 seq prokMSA_id:70671 Prevotella sp. oral clone DO014 2.15.1.2.13.5440 OTU 1 seq prokMSA_id:44821 clone p-2517-18B5 2.15.1.2.13.5453 OTU 1 seq prokMSA_id:22951 Prevotella sp. oral clone AU069 2.15.1.2.13.5484 OTU 1 seq prokMSA_id:71907 Prevotella sp. oral clone FX046 2.15.1.2.13.5597 OTU 3 seqs prokMSA_id:41169 Bacteroidales str. KB3 AB078826 prokMSA_id:45491 Bacteroidales str. KB11 prokMSA_id:50178 Bacteroidales str. KB13 2.15.1.2.13.5606 OTU 1 seq prokMSA_id:18221 rumen 4C3d-6 2.15.1.2.13.5632 OTU 1 seq prokMSA_id:72142 adhufec235 2.15.1.2.13.5665 OTU 1 seq prokMSA_id:2204 clone 12-56 2.15.1.2.13.5670 OTU 1 seq prokMSA_id:2206 clone 12-104 2.15.1.2.13.5687 OTU 1 seq prokMSA_id:2213 clone 30-24 2.15.1.2.13.5690 OTU 1 seq prokMSA_id:2215 clone 30-49 2.15.1.2.13.5704 OTU 1 seq prokMSA_id:2225 clone 12-107 2.15.1.2.13.5706 OTU 2 seqs prokMSA_id:2224 str. PUS3.3 prokMSA_id:45107 Prevotella sp. oral clone F045 2.15.1.2.13.5705 OTU 1 seq prokMSA_id:42820 Prevotella sp. oral clone AO096 2.15.1.2.13.5735 OTU 1 seq prokMSA_id:74280 Prevotella sp. clone DG059 2.15.1.2.13.5738 OTU 1 seq prokMSA_id:2184 clone 30-12 2.15.1.2.13.5741 OTU 1 seq prokMSA_id:2188 Prevotella veroralis ATCC 33779 2.15.1.2.13.5745 OTU 1 seq prokMSA_id:18282 equine intestinal sp. PL11 clone PL11 2.15.1.2.13.5756 OTU 13 seqs prokMSA_id:2197 Prevotella intermedia str. B422 S.Finegold ATCC 25611 prokMSA_id:17066 Prevotella intermedia strain 15-PIN AF414828 prokMSA_id:18327 Prevotella intermedia strain 35-PIN prokMSA_id:25390 Prevotella intermedia strain 16-PIN AF414829 prokMSA_id:28131 Prevotella intermedia strain 32-PIN AF414824 prokMSA_id:45410 Prevotella intermedia strain 10-PIN AF414827 prokMSA_id:70556 Prevotella intermedia strain 23-PIN AF414831 prokMSA_id:70907 Prevotella intermedia strain 5-PIN prokMSA_id:70996 Prevotella intermedia strain 24-PIN AF414832 prokMSA_id:72112 Prevotella intermedia strain ATCC 25611 AF414821 prokMSA_id:72550 Prevotella intermedia strain 6-PIN prokMSA_id:73101 Prevotella intermedia strain 36-PIN prokMSA_id:74076 Prevotella intermedia strain 22-PIN AF414830 2.15.1.2.13.5766 OTU 1 seq prokMSA_id:2193 Prevotella disiens ATCC 29426 2.15.1.2.13.5769 OTU 1 seq prokMSA_id:69843 Bacteroidaceae str. A42 2.15.1.2.13.5819 OTU 2 seqs prokMSA_id:73666 Prevotella ruminicola strain TC2-3 prokMSA_id:73671 Prevotella ruminicola strain 223/M2/7 2.15.1.2.13.5846 OTU 1 seq prokMSA_id:71701 mpn-isolate group 3 2.15.1.2.13.5864 OTU 1 seq prokMSA_id:71710 clone p-993-s962-5 2.15.1.2.13.5893 OTU 1 seq prokMSA_id:73324 Prevotella sp. oral clone DO045 2.15.1.2.13.5905 OTU 11 seqs prokMSA_id:2189 clone adhufec61.25 prokMSA_id:2190 clone adhufec41.25 prokMSA_id:26496 clone p-2443-18B5 prokMSA_id:29272 adhufec94 prokMSA_id:29968 Prevotella sp. oral clone FM005 prokMSA_id:33062 CA75 prokMSA_id:35402 Prevotella sp. oral clone BE073 prokMSA_id:36894 clone p-1029-a5 prokMSA_id:38507 clone p-1980-s959-5 prokMSA_id:42963 adhufec43 prokMSA_id:48738 mpn-isolate group 1 2.15.1.2.13.5909 OTU 1 seq prokMSA_id:36031 clone p-3779-23G3 2.15.1.2.13.5929 OTU 3 seqs prokMSA_id:2200 Prevotella albensis str. M384 DSM 11370 prokMSA_id:2202 clone 12-8. AF018456 prokMSA_id:2216 Prevotella RZ str. RZ 2.15.1.2.13.5940 OTU 1 seq prokMSA_id:55854 Prevotella sp. E7_34 E1 oral isolate 2.15.1.2.13.5946 OTU 1 seq prokMSA_id:72779 Prevotella sp. oral clone DO027 2.15.1.2.13.5949 OTU 1 seq prokMSA_id:31240 clone p-2173-s959-3 2.15.1.2.13.5983 OTU 3 seqs prokMSA_id:39852 clone p-3951-23G5 prokMSA_id:45329 mpn-isolate group 4 prokMSA_id:76393 Prevotella sp. RS2 2.15.1.2.13.6018 OTU 1 seq prokMSA_id:68838 clone p-394-o3 2.15.1.2.13.6026 OTU 1 seq prokMSA_id:50936 Bacteroidales str. KB1 2.15.1.2.13.6039 OTU 2 seqs prokMSA_id:2208 clone 12-109 prokMSA_id:36773 rumen 4C28d-23 2.15.1.2.13.6045 OTU 13 seqs prokMSA_id:2198 Prevotella nigrescens str. Lambe 729-74 NCTC 9336 prokMSA_id:34082 E1-K11 prokMSA_id:35662 Prevotella nigrescens strain 7-PNIG prokMSA_id:52068 Prevotella nigrescens strain 37-PNIG prokMSA_id:70423 Prevotella nigrescens strain 17-PNIG prokMSA_id:70986 Prevotella nigrescens strain 11-PNIG prokMSA_id:71190 Prevotella nigrescens strain 31-PNIG prokMSA_id:71240 Prevotella nigrescens strain 9-PNIG prokMSA_id:71569 Prevotella nigrescens strain 13-PNIG prokMSA_id:72329 Prevotella nigrescens strain 8-PNIG prokMSA_id:73458 Prevotella nigrescens strain 20-PNIG prokMSA_id:73473 Prevotella nigrescens strain ATCC 33563 prokMSA_id:73933 Prevotella nigrescens strain 18-PNIG 2.15.1.2.13.6047 OTU 1 seq prokMSA_id:63123 clone MB-A2-107 2.15.1.2.13.6072 OTU 2 seqs prokMSA_id:54330 Prevotella sp. oral clone AA016 AY005058 prokMSA_id:73752 Prevotella sp. oral clone AA020 2.15.1.2.13.6073 OTU 1 seq prokMSA_id:17164 Bacteroidales str. KB10 2.15.1.2.13.6121 OTU 1 seq prokMSA_id:49622 equine intestinal sp. ML07 clone ML07 2.15.1.2.13.6125 OTU 2 seqs prokMSA_id:29831 Bacteroidales str. KB7 AB078827 prokMSA_id:30361 Bacteroidales str. KB12 2.15.1.2.13.6166 OTU 3 seqs prokMSA_id:24338 Prevotella sp. oral clone AO009 AY005059 prokMSA_id:71918 Prevotella sp. oral clone BR014 prokMSA_id:88035 Prevotella genomosp. C2 AY278625 2.15.1.2.13.6178 OTU 1 seq prokMSA_id:16549 clone p-1031-a5 2.15.1.2.13.6179 OTU 1 seq prokMSA_id:74407 Prevotella sp. oral clone DA058 2.15.1.2.13.6207 OTU 1 seq prokMSA_id:83758 rumen clone BF34 2.15.1.2.13.6239 OTU 1 seq prokMSA_id:72590 Prevotella sp. oral clone DO033 2.15.1.2.13.6275 OTU 1 seq prokMSA_id:33010 clone p-2407-55G5 2.15.1.3 CYTOPHAGA_GROUP_I 643 seqs 2.15.1.3.2 MSC.AGGREGANS_SUBGROUP 3 seqs 2.15.1.3.2.5400 OTU 1 seq prokMSA_id:58645 Flexibacter aggregans subsp. catalaticus strain:IFO 15977 2.15.1.3.2.5813 OTU 1 seq prokMSA_id:49398 PHOS-HE28 2.15.1.3.2.6268 OTU 1 seq prokMSA_id:77910 clone s34 2.15.1.3.3 BLT.SP_SUBGROUP 51 seqs 2.15.1.3.3.5734 OTU 1 seq prokMSA_id:2237 endosymbiont of Mastotermes darwiniensis 2.15.1.3.3.5737 OTU 1 seq prokMSA_id:2238 Blattabacterium sp 2.15.1.3.3.5739 OTU 1 seq prokMSA_id:2239 Blattabacterium sp 2.15.1.3.3.5777 OTU 1 seq prokMSA_id:2241 Flavobacterium sp 2.15.1.3.3.5776 OTU 1 seq prokMSA_id:2240 unnamed organism 2.15.1.3.3.5778 OTU 1 seq prokMSA_id:2243 Blattabacterium sp 2.15.1.3.3.5828 OTU 1 seq prokMSA_id:2235 Blattabacterium sp 2.15.1.3.3.6010 OTU 2 seqs prokMSA_id:2233 Blattabacterium sp prokMSA_id:2234 Blattabacterium sp 2.15.1.3.3.6141 OTU 3 seqs prokMSA_id:24514 Blattabacterium relictus AF363715 prokMSA_id:36262 Blattabacterium sp. Cryptocercus relictus AF322473 prokMSA_id:43163 Blattabacterium sp. Cryptocercus relictus 2.15.1.3.3.6270 OTU 39 seqs prokMSA_id:2236 Blattabacterium sp prokMSA_id:16690 Blattabacterium punctulatus prokMSA_id:16942 Blattabacterium punctulatus AF363693 prokMSA_id:18153 Blattabacterium sp. Cryptocercus darwini isolate Cumberland prokMSA_id:18551 Blattabacterium punctulatus prokMSA_id:18626 Blattabacterium sp. Cryptocercus wrighti isolate Bear prokMSA_id:20670 Blattabacterium sp. Cryptocercus darwini isolate Cheaha prokMSA_id:21143 Blattabacterium punctulatus prokMSA_id:21150 Blattabacterium punctulatus prokMSA_id:24181 Blattabacterium punctulatus prokMSA_id:24910 Blattabacterium punctulatus prokMSA_id:24997 Blattabacterium punctulatus prokMSA_id:25301 Blattabacterium sp. Cryptocercus wrighti isolate Little prokMSA_id:27730 Blattabacterium sp. Cryptocercus punctulatus isolate Mountai prokMSA_id:27731 Blattabacterium sp. Cryptocercus wrighti isolate Asheville prokMSA_id:29432 Blattabacterium punctulatus prokMSA_id:30774 Blattabacterium sp. Cryptocercus darwini isolate DeSoto prokMSA_id:31782 Blattabacterium punctulatus AF363695 prokMSA_id:32119 Blattabacterium punctulatus prokMSA_id:33549 Blattabacterium sp. Cryptocercus garciai isolate Cherry AF32 prokMSA_id:33965 Blattabacterium sp. Cryptocercus punctulatus isolate Mononga prokMSA_id:35136 Blattabacterium punctulatus prokMSA_id:35277 Blattabacterium punctulatus prokMSA_id:35615 Blattabacterium punctulatus prokMSA_id:37019 Blattabacterium sp. Cryptocercus wrighti AF322469 prokMSA_id:37689 Blattabacterium punctulatus prokMSA_id:38143 Blattabacterium sp. Cryptocercus darwini isolate Daniel prokMSA_id:39069 Blattabacterium sp. Cryptocercus darwini isolate Buck prokMSA_id:40895 Blattabacterium punctulatus prokMSA_id:42526 Blattabacterium sp. Cryptocercus garciai isolate Vogel AF322 prokMSA_id:42631 Blattabacterium punctulatus AF363692 prokMSA_id:43084 Blattabacterium sp. Cryptocercus garciai isolate Highway AF3 prokMSA_id:43690 Blattabacterium punctulatus prokMSA_id:49951 Blattabacterium punctulatus AF363697 prokMSA_id:50133 Blattabacterium punctulatus AF363698 prokMSA_id:50389 Blattabacterium punctulatus AF363709 prokMSA_id:50894 Blattabacterium punctulatus AF363699 prokMSA_id:52027 Blattabacterium sp. Cryptocercus punctulatus AF310161 prokMSA_id:74844 Blattabacterium punctulatus 2.15.1.3.4 EMB.BREVIS_SUBGROUP 13 seqs 2.15.1.3.4.5248 OTU 1 seq prokMSA_id:86113 Bacteroidetes clone 1G12 2.15.1.3.4.5714 OTU 2 seqs prokMSA_id:69811 Brumimicrobium glaciale prokMSA_id:70335 Cf. Cytophaga sp. MGP-8AN AF530156 2.15.1.3.4.5918 OTU 1 seq prokMSA_id:28957 Bacteroidetes clone BIui38 2.15.1.3.4.6035 OTU 7 seqs prokMSA_id:2247 Ornithobacterium rhinotracheale str. D95-36425 prokMSA_id:2248 Ornithobacterium rhinotracheale LMG 9086 prokMSA_id:2249 Ornithobacterium rhinotracheale LMG 11553 prokMSA_id:2250 Ornithobacterium rhinotracheale LMG 15870 prokMSA_id:2251 Ornithobacterium rhinotracheale LMG 11554 prokMSA_id:2252 Ornithobacterium rhinotracheale LMG 14578 prokMSA_id:2253 Ornithobacterium rhinotracheale LMG 11551 2.15.1.3.4.6190 OTU 1 seq prokMSA_id:41838 CFB group kpj11rc 2.15.1.3.4.6225 OTU 1 seq prokMSA_id:2255 clone BA2 2.15.1.3.5 CSB.MENINGOSEPTICUM_SUBGROUP 29 seqs 2.15.1.3.5.5352 OTU 28 seqs prokMSA_id:21663 Chryseobacterium meningosepticum CIP 7830 AF207073 prokMSA_id:24059 Chryseobacterium meningosepticum PINT prokMSA_id:25313 Chryseobacterium meningosepticum AB1572 AF207076 prokMSA_id:26365 Chryseobacterium meningosepticum CIP 79.5 prokMSA_id:27969 Chryseobacterium meningosepticum CIP 6057 prokMSA_id:35949 Chryseobacterium meningosepticum CIP 6059 prokMSA_id:36392 Chryseobacterium meningosepticum CIP 6058 prokMSA_id:38477 Chryseobacterium meningosepticum AMA prokMSA_id:45371 Chryseobacterium meningosepticum HO1J100 prokMSA_id:45458 Chryseobacterium meningosepticum GEO prokMSA_id:56180 Trichloroacetic-acid-degrading TCAA1 prokMSA_id:59359 clone HP1B06 prokMSA_id:59361 clone HP1A43 prokMSA_id:59466 Chryseobacterium mirecola prokMSA_id:60999 Flavobacteriaceae 90B prokMSA_id:62966 clone LPB28 prokMSA_id:63613 Chryseobacterium sp. AU939 prokMSA_id:67365 Chryseobacterium sp. CPW406 prokMSA_id:67485 Flavobacteriaceae str. EP105 prokMSA_id:78557 Chryseobacterium sp. DW3 isolate DW3 AJ534853 prokMSA_id:82614 Flavobacterium sp. 'Smarlab BioMol-2300973' prokMSA_id:89098 Kaistella koreensis strain Ko10 AY299974 prokMSA_id:90366 Kaistella koreensis complete AY294611 prokMSA_id:91024 clone W4-B50 AY345495 prokMSA_id:91220 K2-70 AY345404 prokMSA_id:91713 Chryseobacterium meningosepticum strain ATCC 13253 AY336568 prokMSA_id:91756 KA75 AY345443 prokMSA_id:94931 CFB group clone S15D-MN4 AJ583192 2.15.1.3.5.5555 OTU 1 seq prokMSA_id:26642 clone BIfcii29 2.15.1.3.6 CSB.BALUSTINUM_SUBGROUP 39 seqs 2.15.1.3.6.5255 OTU 1 seq prokMSA_id:19397 CFB group clone TAF-A228 2.15.1.3.6.5276 OTU 1 seq prokMSA_id:17076 Chryseobacterium indologenes SB1 2.15.1.3.6.5339 OTU 1 seq prokMSA_id:70367 CFB group clone TAF-A199 2.15.1.3.6.5362 OTU 1 seq prokMSA_id:73938 CFB group clone TAF-A144 2.15.1.3.6.5446 OTU 1 seq prokMSA_id:32882 Flavobacteriaceae str. 2 2.15.1.3.6.5470 OTU 1 seq prokMSA_id:63469 Chryseobacterium sp. p20H 2.15.1.3.6.5495 OTU 1 seq prokMSA_id:75303 Chryseobacterium sp. kr6 2.15.1.3.6.5505 OTU 2 seqs prokMSA_id:31168 Chryseobacterium sp. dU1 prokMSA_id:48960 Chryseobacterium sp. dU3 AF375838 2.15.1.3.6.5535 OTU 2 seqs prokMSA_id:43886 Flavobacterium sp. A14 strain A14-B19 AF406663 prokMSA_id:74496 Flavobacterium sp. B17 2.15.1.3.6.5629 OTU 1 seq prokMSA_id:21005 Chryseobacterium proteolyticum 2.15.1.3.6.5653 OTU 1 seq prokMSA_id:19303 Chryseobacterium joosteii strain LMG 18212 2.15.1.3.6.5726 OTU 1 seq prokMSA_id:71901 Bergeyella sp. oral clone AK152 2.15.1.3.6.5730 OTU 1 seq prokMSA_id:81435 clone BIOEST-10 2.15.1.3.6.5788 OTU 2 seqs prokMSA_id:19452 Unknown organism 1863 strain F006 prokMSA_id:21236 Unknown organism 1863 strain F006C 2.15.1.3.6.5797 OTU 1 seq prokMSA_id:20686 CFB group clone TAF-A70 2.15.1.3.6.5843 OTU 7 seqs prokMSA_id:2261 Riemerella anatipestifer ATCC 11845 prokMSA_id:22221 Riemerella anatipestifer strain 4005 prokMSA_id:24404 Riemerella anatipestifer strain 4280 prokMSA_id:47818 Riemerella anatipestifer serotype 19 strain 30/90 prokMSA_id:75752 flavobacterium sp. clone JG37-AG-16 prokMSA_id:82260 Slime control method in paper making step of neutral paper m prokMSA_id:87140 Flavobacteriaceae genomosp. C1 AY278614 2.15.1.3.6.5862 OTU 3 seqs prokMSA_id:2265 Flavobacterium paraogurii prokMSA_id:2274 Chryseobacterium indologenes prokMSA_id:2276 Chryseobacterium gleum 2.15.1.3.6.5934 OTU 2 seqs prokMSA_id:45877 Haloanella gallinarum complete AB035150 prokMSA_id:86598 Haloanella gallinarum 2.15.1.3.6.6079 OTU 1 seq prokMSA_id:78016 CFB group clone:APe4_42 2.15.1.3.6.6090 OTU 1 seq prokMSA_id:77694 CFB group clone:APe2_9 2.15.1.3.6.6100 OTU 1 seq prokMSA_id:71527 Chryseobacterium defluvium isolate B2 2.15.1.3.6.6126 OTU 1 seq prokMSA_id:32560 Chryseobacterium sp. FR2 complete 2.15.1.3.6.6157 OTU 1 seq prokMSA_id:59536 Enrichment culture LB-Q clone LB-Q 2.15.1.3.6.6195 OTU 1 seq prokMSA_id:72435 Flavobacterium-like sp. oral clone AY017 2.15.1.3.6.6215 OTU 1 seq prokMSA_id:46641 Flavobacterium sp. cpw707 2.15.1.3.6.6251 OTU 1 seq prokMSA_id:2268 clone WsCH39 2.15.1.3.6.6284 OTU 1 seq prokMSA_id:2270 clone BS1 2.15.1.3.9 MY.ODORATUS_SUBGROUP 2 seqs 2.15.1.3.9.5533 OTU 2 seqs prokMSA_id:2285 str. SS2 prokMSA_id:2286 str. SS1 2.15.1.3.10 F.FLEVENSE_SUBGROUP 181 seqs 2.15.1.3.10.5244 OTU 1 seq prokMSA_id:18678 CFB group MERTZ_0CM_382 2.15.1.3.10.5243 OTU 1 seq prokMSA_id:31371 Bacteroidetes clone BIhi40 2.15.1.3.10.5261 OTU 2 seqs prokMSA_id:16309 Crater Lake CL0-114 AF316792 prokMSA_id:23279 Crater Lake CL0-37 2.15.1.3.10.5277 OTU 4 seqs prokMSA_id:20304 flavobacterium sp. clone A2 AJ319006 prokMSA_id:23404 Flavobacterium sp. IsoC1 isolate IsoC1 prokMSA_id:40777 Flavobacterium sp. IsoB1 isolate IsoB1 prokMSA_id:52496 Flavobacterium sp. IsoA1 isolate IsoA1 AJ319015 2.15.1.3.10.5282 OTU 1 seq prokMSA_id:2299 Flavobacterium psychrophilum ATCC 49418 2.15.1.3.10.5301 OTU 2 seqs prokMSA_id:2324 clone BURTON-44 prokMSA_id:22560 CFB group MERTZ_2CM_320 2.15.1.3.10.5336 OTU 1 seq prokMSA_id:23658 SIC.B8232 2.15.1.3.10.5341 OTU 1 seq prokMSA_id:44565 CFB group clone TAF-A168 2.15.1.3.10.5367 OTU 1 seq prokMSA_id:83488 Cf. Cytophaga sp. MDA2507 2.15.1.3.10.5391 OTU 1 seq prokMSA_id:21369 Bacteroidetes clone BIwi5 2.15.1.3.10.5399 OTU 5 seqs prokMSA_id:2323 Cytophaga sp. str. 0092 prokMSA_id:57758 Flavobacterium sp. SC1 prokMSA_id:57759 Flavobacterium sp. SR1 prokMSA_id:57760 Flavobacterium sp. BR1 prokMSA_id:58641 Flexibacter aurantiacus subsp. excathedrus strain:IFO 16024 2.15.1.3.10.5435 OTU 4 seqs prokMSA_id:80388 clone ARKICE-35 AF468305 prokMSA_id:81071 Arctic sea ice clone ARKXV/1-43 AY165589 prokMSA_id:81822 Arctic sea ice clone ARKXV/1-139 prokMSA_id:82527 Antarctic R-8282 strain R-8282 2.15.1.3.10.5462 OTU 19 seqs prokMSA_id:17527 Flavobacterium omnivorum As1.2747 prokMSA_id:43638 rape rhizosphere wr0076 prokMSA_id:48501 Cytophaga sp. P1 prokMSA_id:55662 Flavobacterium sp. EP134 prokMSA_id:60350 clone Glu1 prokMSA_id:67568 Flavobacterium sp. EP360 prokMSA_id:67571 Flavobacterium sp. EP136 prokMSA_id:67577 Flavobacterium sp. EP372 prokMSA_id:69817 Flavobacterium sp. EP300 prokMSA_id:69846 Flavobacterium sp. EP306 prokMSA_id:70207 Flavobacterium sp. EP233 prokMSA_id:70214 Flavobacterium sp. EP241 prokMSA_id:70473 Flavobacterium sp. EP246 prokMSA_id:70652 Flavobacterium sp. EP297 prokMSA_id:71261 Flavobacterium sp. EP328 prokMSA_id:71429 Flavobacterium sp. EP251 prokMSA_id:71583 Flavobacterium sp. EP204 prokMSA_id:73010 Flavobacterium sp. EP101 prokMSA_id:73277 Flavobacterium sp. EP286 2.15.1.3.10.5479 OTU 9 seqs prokMSA_id:30411 Flavobacterium xinjiangensis AS1.2749 prokMSA_id:34165 Flavobacterium sp. ST-92 prokMSA_id:36697 Flavobacterium sp. ST-10 prokMSA_id:41560 Flavobacterium aff. xylanivorum A1/C-aer/OIV prokMSA_id:52347 Flavobacterium sp. ST-82 prokMSA_id:80159 Arctic sea ice ARK10287 prokMSA_id:81617 Bacteroidetes ARK10264 prokMSA_id:83757 Antarctic R-8022 strain R-8022 prokMSA_id:85147 Antarctic R-7550 strain R-7550 2.15.1.3.10.5482 OTU 1 seq prokMSA_id:73509 Flavobacterium sp. EP333 2.15.1.3.10.5480 OTU 1 seq prokMSA_id:77276 Earthworm gut ED5 2.15.1.3.10.5486 OTU 1 seq prokMSA_id:2300 clone MK06 2.15.1.3.10.5485 OTU 1 seq prokMSA_id:44265 FukuN36 2.15.1.3.10.5487 OTU 1 seq prokMSA_id:2301 clone MK08 2.15.1.3.10.5490 OTU 1 seq prokMSA_id:47437 CFB group GOBB3-308 2.15.1.3.10.5531 OTU 1 seq prokMSA_id:2313 Gelidibacter QSSC1-21 str. QSSC1-21 2.15.1.3.10.5536 OTU 1 seq prokMSA_id:2314 str. QSSC9-3 2.15.1.3.10.5588 OTU 1 seq prokMSA_id:44727 Flavobacterium sp. GOBB3-109 2.15.1.3.10.5590 OTU 1 seq prokMSA_id:82700 Antarctic R-9033 strain R-9033 2.15.1.3.10.5615 OTU 1 seq prokMSA_id:71577 Cytophagales clone PRD01b005B 2.15.1.3.10.5661 OTU 1 seq prokMSA_id:21882 Spd2B_4 2.15.1.3.10.5675 OTU 1 seq prokMSA_id:25476 CFB group clone TAF-A35 2.15.1.3.10.5742 OTU 1 seq prokMSA_id:46038 ARCTIC.16 2.15.1.3.10.5750 OTU 2 seqs prokMSA_id:19998 Flavobacterium sp. GOBB3-C103-3 prokMSA_id:37648 Flavobacterium sp. GOBB3-C101 2.15.1.3.10.5821 OTU 1 seq prokMSA_id:44589 CFB group clone TAF-A38 2.15.1.3.10.5847 OTU 1 seq prokMSA_id:72366 CFB group clone TAF-B87 2.15.1.3.10.5867 OTU 1 seq prokMSA_id:48020 CFB group MERTZ_0CM_293 2.15.1.3.10.5901 OTU 5 seqs prokMSA_id:79763 Arctic sea ice ARK10104 prokMSA_id:80437 Arctic sea ice ARK10164 prokMSA_id:80488 Arctic sea ice ARK10161 prokMSA_id:80779 Arctic sea ice ARK10270 prokMSA_id:80970 Arctic sea ice ARK10159 2.15.1.3.10.5915 OTU 1 seq prokMSA_id:76123 bacteroidetes clone S15A-MN27 2.15.1.3.10.5931 OTU 6 seqs prokMSA_id:2310 Flavobacterium columnare str. IAM 14301 prokMSA_id:2311 Flavobacterium columnare str. FK 401 prokMSA_id:2317 Flavobacterium columnare str. JIP 49/87 ATCC 49513 prokMSA_id:31594 Flavobacterium sp. IsoD1 isolate IsoD1 AJ319020 prokMSA_id:58640 Flavobacterium columnare strain:IFO 15943 prokMSA_id:77434 Flavobacterium columnare 2.15.1.3.10.5933 OTU 1 seq prokMSA_id:2325 Flavobacterium columnare str. PH-97028 IAM 14821 2.15.1.3.10.5935 OTU 1 seq prokMSA_id:2326 clone BS5 2.15.1.3.10.5954 OTU 22 seqs prokMSA_id:2296 clone K20-54 prokMSA_id:2297 Flavobacterium BURTON-22. AF142841 prokMSA_id:2298 Flavobacterium frigidarium complete prokMSA_id:2319 Flavobacterium hibernum ATCC 51468 prokMSA_id:2327 Flavobacterium xanthum ACAM 81 prokMSA_id:18728 Acanthamoeba sp. K69i AF366583 prokMSA_id:22760 Flavobacterium SIC.ARCTIC.156 AF277542 prokMSA_id:27830 Acanthamoeba sp. KHLA1 prokMSA_id:28033 Cytophaga sp. KT0234A prokMSA_id:30501 Cytophagales clone PRD01b007B prokMSA_id:38264 Elbe River snow isolate Iso8 prokMSA_id:58643 Flavobacterium johnsoniae strain:IFO 15970 prokMSA_id:67491 Flavobacterium sp. SW254 prokMSA_id:69855 Flavobacterium sp. EP209 prokMSA_id:69915 Flavobacterium sp. EP217 prokMSA_id:70674 Flavobacterium sp. EP236 prokMSA_id:71925 Flavobacterium sp. EP030 prokMSA_id:73974 Flavobacterium hibernum prokMSA_id:77602 CFB group clone:APe4_4 prokMSA_id:83993 Flavobacterium sp. GOBB3-209 prokMSA_id:85358 Antarctic R-9003 strain R-9003 prokMSA_id:91330 clone W4A-G04 AY345505 2.15.1.3.10.5968 OTU 2 seqs prokMSA_id:19188 BA12 prokMSA_id:31709 BA6 2.15.1.3.10.5997 OTU 30 seqs prokMSA_id:2295 Flavobacterium sp. str. A265 prokMSA_id:2309 Flavobacterium aquatile ATCC 11947 . M62797 prokMSA_id:2320 Flavobacterium sp. str. A103 prokMSA_id:2322 Flavobacterium sp. ACAM 123. U85890 prokMSA_id:2330 Flexibacter aurantiacus str. Lewin DWO ATCC 23107 . M62792 prokMSA_id:2334 Flavobacterium johnsoniae M59051 prokMSA_id:2401 Cytophaga fucicola str. NN015860 strain prokMSA_id:23812 Cellulophaga lytica strain:IFO15986 prokMSA_id:25886 Cellulophaga lytica strain:IFO16020 prokMSA_id:28162 Cellulophaga lytica strain:IFO16021 prokMSA_id:29722 Cellulophaga lytica strain:MBIC1544 prokMSA_id:31829 Cellulophaga lytica strain ACEM21 AY035870 prokMSA_id:34517 Cellulophaga lytica strain:IFO16022 prokMSA_id:52052 CFB group GOBB3-317_2 prokMSA_id:58543 Flavobacterium gelidilacus strain LMG 21477 AJ440996 prokMSA_id:58544 Flavobacterium gelidilacus strain LMG 21619 AJ507151 prokMSA_id:58629 Flavobacterium psychrophilum strain:IFO 15942 prokMSA_id:69711 Bacteroidetes clone FTLM155 AF529117 prokMSA_id:71270 Flavobacteriales CF-1 AY145539 prokMSA_id:71465 Flavobacterium sp. EP125 AF493655 prokMSA_id:72663 Flavobacterium sp. V12.MO.200.17 AJ244699 prokMSA_id:73721 Flavobacterium sp. EP130 AF493637 prokMSA_id:73825 CS910 AY124339 prokMSA_id:82751 Antarctic R-8963 strain R-8963 AJ440998 prokMSA_id:84320 Antarctic R-7666 strain R-7666 prokMSA_id:84602 Antarctic R-7579 strain R-7579 prokMSA_id:85662 Flavobacteria clone TLM12 prokMSA_id:88618 Glacier FJS32 AY315159 prokMSA_id:93990 Gelidibacter sp. 'BSD S2 05' AY259512 prokMSA_id:98800 Flavobacterium fryxellicola strain LMG 22022 AJ585429 2.15.1.3.10.6014 OTU 1 seq prokMSA_id:48592 SIC.946 2.15.1.3.10.6017 OTU 1 seq prokMSA_id:72799 Flavobacterium sp. IsoE1 isolate IsoE1 2.15.1.3.10.6027 OTU 1 seq prokMSA_id:51596 BAx1 2.15.1.3.10.6034 OTU 2 seqs prokMSA_id:2312 Flavobacterium columnare str. EK-28 IAM 14820 prokMSA_id:2315 Flavobacterium columnare str. LP 8 2.15.1.3.10.6041 OTU 1 seq prokMSA_id:40092 antarctic soil clone bh3.26 2.15.1.3.10.6042 OTU 3 seqs prokMSA_id:24397 isolate BUG-82 AJ320489 prokMSA_id:73968 Bacteroidetes so23 AF530973 prokMSA_id:84227 Antarctic R-7515 strain R-7515 2.15.1.3.10.6067 OTU 10 seqs prokMSA_id:17681 clone KS27 AF328176 prokMSA_id:26719 SIC.B8012 AF277556 prokMSA_id:30111 clone KS28 AF328177 prokMSA_id:31861 clone KS88 AF328221 prokMSA_id:33373 clone KS10 AF328164 prokMSA_id:39816 clone KS15 AF328168 prokMSA_id:46252 CFB group kbc13 AF195444 prokMSA_id:51877 clone KS16 AF328169 prokMSA_id:75119 Croceibacter atlanticus strain HTCC2559T prokMSA_id:83353 Marine arctic deep-sea FI7 AJ557873 2.15.1.3.10.6077 OTU 1 seq prokMSA_id:52923 Flavobacterium sp. clone GOBB3-CL141 2.15.1.3.10.6083 OTU 1 seq prokMSA_id:59360 clone HP1A39 2.15.1.3.10.6089 OTU 1 seq prokMSA_id:65530 yard-trimming-compost clone S-72 2.15.1.3.10.6103 OTU 1 seq prokMSA_id:17931 CFB group GOBB3-210 2.15.1.3.10.6112 OTU 1 seq prokMSA_id:39169 CFB group A1002 2.15.1.3.10.6113 OTU 3 seqs prokMSA_id:28744 Flavobacterium sp. IsoD2 isolate IsoD2 prokMSA_id:32751 Flavobacterium sp. IsoC2 isolate IsoC2 AJ319019 prokMSA_id:59118 Flavobacterium sp. BH11.5 isolate BH11.5 AJ440504 2.15.1.3.10.6145 OTU 2 seqs prokMSA_id:22450 MK12 prokMSA_id:65573 yard-trimming-compost clone S-16 2.15.1.3.10.6163 OTU 1 seq prokMSA_id:72573 CFB group clone TAF-A188 2.15.1.3.10.6186 OTU 1 seq prokMSA_id:39294 Cytophagales clone 15 2.15.1.3.10.6197 OTU 1 seq prokMSA_id:39414 MK18 2.15.1.3.10.6200 OTU 1 seq prokMSA_id:40807 Flavobacterium sp. GOBB3-C108 2.15.1.3.10.6203 OTU 2 seqs prokMSA_id:68616 clone KRA30+19 prokMSA_id:68626 clone KRA30+03 AY081974 2.15.1.3.10.6206 OTU 2 seqs prokMSA_id:33592 Flexibacter sp. FR1 AF217563 prokMSA_id:41509 O11D1 2.15.1.3.10.6220 OTU 1 seq prokMSA_id:19183 antarctic soil clone bh1.62 2.15.1.3.10.6254 OTU 1 seq prokMSA_id:23950 CFB group A0653 2.15.1.3.10.6274 OTU 1 seq prokMSA_id:43553 BS7 2.15.1.3.10.6313 OTU 1 seq prokMSA_id:20632 earthworm cast clone C147 2.15.1.3.10.6322 OTU 1 seq prokMSA_id:27491 antarctic soil clone bh2.35 2.15.1.3.11 FLX.MARITIMUS_SUBGROUP 83 seqs 2.15.1.3.11.5251 OTU 5 seqs prokMSA_id:21361 Flexibacter sp. kba19 AF195446 prokMSA_id:22718 Tenacibaculum mesophilum strain:MBIC4357 AB032504 prokMSA_id:31105 Tenacibaculum mesophilum strain:MBIC1140 prokMSA_id:44581 Tenacibaculum mesophilum strain:MBIC1543 prokMSA_id:52498 Tenacibaculum mesophilum strain:MBIC4356 AB032503 2.15.1.3.11.5317 OTU 27 seqs prokMSA_id:2352 Polaribacter franzmannii str. 301 prokMSA_id:2355 Polaribacter IC063 str. IC063 prokMSA_id:2356 Polaribacter IC066 str. IC066 prokMSA_id:2357 Polaribacter filamentus str. 215 prokMSA_id:28929 Polaribacter Arctic96B-11 AF354621 prokMSA_id:43476 Polaribacter Arctic97A-15 AF354620 prokMSA_id:44604 marine ZD0255 prokMSA_id:58630 Tenacibaculum maritimum strain:IFO 15946 prokMSA_id:61127 Polaribacter sp. MGP-9 prokMSA_id:67335 Polaribacter sp. SW007 prokMSA_id:70110 Marine ATAM173a_2 prokMSA_id:79136 Bacteroidetes KMM 3938 prokMSA_id:79783 Arctic sea ice ARK10177 prokMSA_id:79935 Arctic sea ice associated ARK10121 prokMSA_id:80091 Arctic sea ice ARK10048 prokMSA_id:80368 Arctic sea ice associated ARK10124 prokMSA_id:80402 Polaribacter sp. HLE prokMSA_id:80621 Arctic sea ice ARK10105 prokMSA_id:81099 Polaribacter irgensii strain ANT9044 prokMSA_id:81397 Polaribacter sp. ANT9167 prokMSA_id:81422 Polaribacter irgensii strain ANT9243 prokMSA_id:81705 Antarctic sea ice clone ANTXI/4_14-12 prokMSA_id:81910 Antarctic sea ice clone ANTXI/4_14-37 prokMSA_id:81957 Polaribacter irgensii strain ANT9210 prokMSA_id:81979 Polaribacter franzmannii strain ANT9260 prokMSA_id:82211 Antarctic sea ice clone ANTXI/4_14-55 prokMSA_id:84331 Cellulophaga sp. E26 2.15.1.3.11.5412 OTU 1 seq prokMSA_id:42267 CFB group MERTZ_0CM_16 2.15.1.3.11.5499 OTU 1 seq prokMSA_id:78228 Cytophagales clone Hyd24-2-2 2.15.1.3.11.5507 OTU 1 seq prokMSA_id:19411 Polaribacter SIC.10332 2.15.1.3.11.5618 OTU 1 seq prokMSA_id:43791 Flexibacter sp. UST991130-045 2.15.1.3.11.5641 OTU 1 seq prokMSA_id:30581 CFB group MERTZ_2CM_80 2.15.1.3.11.5660 OTU 1 seq prokMSA_id:25083 CFB group CtaxPhil-13 2.15.1.3.11.5695 OTU 1 seq prokMSA_id:77676 Cytophagales clone Hyd24-41 2.15.1.3.11.5758 OTU 1 seq prokMSA_id:61125 Tenacibaculum sp. MGP-10 2.15.1.3.11.5873 OTU 1 seq prokMSA_id:45481 Tenacibaculum amylolyticum strain:MBIC4355 2.15.1.3.11.5894 OTU 3 seqs prokMSA_id:36779 Cytophaga sp. NBF7 prokMSA_id:42720 Cytophaga sp. NBF12 prokMSA_id:69032 Marine NBF14 2.15.1.3.11.5919 OTU 2 seqs prokMSA_id:22873 Tenacibaculum cellulophagum strain D30 prokMSA_id:59171 Sphingobacteriales RED34 2.15.1.3.11.5922 OTU 1 seq prokMSA_id:25172 CFB group MERTZ_2CM_289 2.15.1.3.11.5991 OTU 23 seqs prokMSA_id:20824 Tenacibaculum ovolyticus strain:IFO15992 AB032507 prokMSA_id:24142 Tenacibaculum ovolyticus strain:IFO15993 AB032508 prokMSA_id:31362 Tenacibaculum sp. clone MERTZ_0CM_42 AF425756 prokMSA_id:37069 Tenacibaculum ovolyticus strain:IAM14318 AB032506 prokMSA_id:47567 clone SIC.9-10 AF333086 prokMSA_id:51108 Polaribacter SIC.B9029 AF277564 prokMSA_id:58631 Tenacibaculum ovolyticum strain:IFO 15947 AB078058 prokMSA_id:66033 Cytophaga sp. MBIC04665 prokMSA_id:66034 Cytophaga sp. T-551 prokMSA_id:67328 Tenacibaculum sp. SW258 prokMSA_id:70094 Polaribacter sp. SW019 AF493675 prokMSA_id:70449 Tenacibaculum sp. SW274 prokMSA_id:73960 Tenacibaculum sp. MGP-74/AN6 prokMSA_id:82951 Bacteroidetes clone CF18 AY274865 prokMSA_id:85098 Bacteroidetes clone CF10 AY274847 prokMSA_id:87187 Flavobacteriaceae G1A2 AY285942 prokMSA_id:87529 Flavobacteriaceae G912S3B AY285945 prokMSA_id:87711 Flavobacteriaceae G912S4 AY285946 prokMSA_id:92204 Flavobacteriaceae G121102s2_3 AY353820 prokMSA_id:92286 Flavobacteriaceae G1112S4A AY353814 prokMSA_id:92882 Flavobacteriaceae G121102s2_2 AY353819 prokMSA_id:92966 Flavobacteriaceae G1112S4B AY353815 prokMSA_id:93100 Flavobacteriaceae G11A3 AY353817 2.15.1.3.11.6021 OTU 1 seq prokMSA_id:2353 clone BURTON-38 2.15.1.3.11.6024 OTU 1 seq prokMSA_id:2354 Polaribacter BURTON-11 2.15.1.3.11.6037 OTU 1 seq prokMSA_id:2359 Cytophaga sp. str. JTB143 2.15.1.3.11.6058 OTU 1 seq prokMSA_id:2362 marine snow associated clone agg50 2.15.1.3.11.6094 OTU 4 seqs prokMSA_id:48241 KHN36A prokMSA_id:53529 Tenacibaculum sp. UST991130-047 AF465364 prokMSA_id:58642 Flexibacter aurantiacus subsp. copepodarum strain:IFO 15978 prokMSA_id:59173 Tenacibaculum sp. RED13 AY136123 2.15.1.3.11.6164 OTU 1 seq prokMSA_id:18143 Flavobacteriaceae str. SA-0082 2.15.1.3.11.6211 OTU 1 seq prokMSA_id:34364 clone CTD5B 2.15.1.3.11.6229 OTU 1 seq prokMSA_id:39685 Marine gliding UWA-1 2.15.1.3.11.6252 OTU 1 seq prokMSA_id:61850 CFB group clone R103-B20 2.15.1.3.11.6318 OTU 1 seq prokMSA_id:84084 Flavobacteriaceae T15 2.15.1.3.12 CAP.OCHRACEA_SUBGROUP 40 seqs 2.15.1.3.12.5263 OTU 1 seq prokMSA_id:71957 Capnocytophaga sp. oral clone DZ074 2.15.1.3.12.5296 OTU 2 seqs prokMSA_id:2371 Coenonia anatina LMG 14382 prokMSA_id:31284 Coenonia anatina 2.15.1.3.12.5300 OTU 2 seqs prokMSA_id:2383 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35 prokMSA_id:2392 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35 2.15.1.3.12.5401 OTU 5 seqs prokMSA_id:2366 Capnocytophaga granulosa LMG 16022 prokMSA_id:2368 Capnocytophaga granulosa ATCC 51502 prokMSA_id:2386 Capnocytophaga gingivalis ATCC 33624 prokMSA_id:58282 Capnocytophaga gingivalis prokMSA_id:70530 Capnocytophaga sp. oral clone AH015 2.15.1.3.12.5434 OTU 2 seqs prokMSA_id:56208 Capnocytophaga sp. ChDC OS43 prokMSA_id:58285 Capnocytophaga sp. ChDC OS44 2.15.1.3.12.5526 OTU 1 seq prokMSA_id:2382 Capnocytophaga gingivalis ATCC 33624 2.15.1.3.12.5563 OTU 1 seq prokMSA_id:66035 Cytophaga sp. I-545 2.15.1.3.12.5645 OTU 1 seq prokMSA_id:70542 Capnocytophaga sp. clone DS022 2.15.1.3.12.5836 OTU 1 seq prokMSA_id:2377 Capnocytophaga granulosa LMG 12119 2.15.1.3.12.5841 OTU 1 seq prokMSA_id:70616 Capnocytophaga sp. oral clone BB167 2.15.1.3.12.5906 OTU 2 seqs prokMSA_id:2373 Capnocytophaga sputigena ATCC 33612 prokMSA_id:2374 Capnocytophaga sputigena str. 897 CIP 100 2.15.1.3.12.5969 OTU 11 seqs prokMSA_id:2363 Capnocytophaga ochracea ATCC 27872 prokMSA_id:2364 Capnocytophaga ochracea FDC 7b. U41354 prokMSA_id:2369 Capnocytophaga ochracea LMG 12115. U41353 prokMSA_id:2394 Capnocytophaga ochracea LMG 12117. U41351 prokMSA_id:26200 Capnocytophaga sp. oral clone X066 prokMSA_id:29194 Capnocytophaga sp. oral clone X089 prokMSA_id:39124 Capnocytophaga sp. oral clone AA032 prokMSA_id:56144 Capnocytophaga ochracea strain ChDC OS48 prokMSA_id:58284 Capnocytophaga ochracea strain ChDC OS42 prokMSA_id:59534 Capnocytophaga sp. oral strain P4G_35 P4 prokMSA_id:87442 Capnocytophaga genomosp. C1 AY278613 2.15.1.3.12.6043 OTU 1 seq prokMSA_id:73803 Capnocytophaga sp. oral clone EL043 2.15.1.3.12.6075 OTU 2 seqs prokMSA_id:2365 Capnocytophaga cynodegmi ATCC 49044 prokMSA_id:2384 Capnocytophaga cynodegmi ATCC 49044 . L14638 2.15.1.3.12.6098 OTU 2 seqs prokMSA_id:2370 Capnocytophaga ochracea str. 25 ATCC 33596 prokMSA_id:2381 Capnocytophaga ochracea str. 25 ATCC 33596 . L14635 2.15.1.3.12.6246 OTU 3 seqs prokMSA_id:21242 Capnocytophaga sp. oral clone BM058 AY005075 prokMSA_id:23229 Capnocytophaga sp. oral clone BU084 prokMSA_id:73111 Capnocytophaga sp. oral clone BR085 2.15.1.3.12.6248 OTU 2 seqs prokMSA_id:2367 Capnocytophaga sp. str. S3 prokMSA_id:37716 Capnocytophaga sp. oral strain S3 2.15.1.3.13 CY.ULIGINOSA_SUBGROUP 75 seqs 2.15.1.3.13.5269 OTU 1 seq prokMSA_id:35795 CFB group clone:TYM--16 2.15.1.3.13.5297 OTU 1 seq prokMSA_id:83454 Flavobacteriaceae TN 2.15.1.3.13.5324 OTU 1 seq prokMSA_id:22632 CLEAR-5 2.15.1.3.13.5421 OTU 5 seqs prokMSA_id:55430 Cytophaga sp. I-689 prokMSA_id:66036 Cytophaga sp. I-105 prokMSA_id:66037 Cytophaga sp. I-1147 prokMSA_id:66038 Cytophaga sp. I-602 AB073569 prokMSA_id:66039 Cytophaga sp. I-601 2.15.1.3.13.5423 OTU 7 seqs prokMSA_id:2407 str. QSSC9-14 prokMSA_id:23255 Aequorivita ferruginea SW49T prokMSA_id:33316 Aequorivita lipolytica Y10-2T prokMSA_id:39184 Aequorivita crocea Y12-2T prokMSA_id:40585 Aequorivita ferruginea O9-2 prokMSA_id:45756 GR-Sh1-5 clone GR-Sh1-5 AJ296578 prokMSA_id:52249 Aequorivita ferruginea G#5 2.15.1.3.13.5451 OTU 1 seq prokMSA_id:36799 Cellulophaga sp. ACEM20 2.15.1.3.13.5456 OTU 6 seqs prokMSA_id:2400 Cytophaga baltica str. NN015840 strain prokMSA_id:45411 Cytophaga sp. KT02ds20 prokMSA_id:67189 Cellulophaga sp. MM#3 prokMSA_id:70798 Cellulophaga sp. SW265 prokMSA_id:71231 Cellulophaga sp. SW285 prokMSA_id:83359 Cytophaga sp. E4 2.15.1.3.13.5503 OTU 1 seq prokMSA_id:76628 Bacteroidetes Ko706 2.15.1.3.13.5509 OTU 1 seq prokMSA_id:82529 Cellulophaga sp. E14 2.15.1.3.13.5538 OTU 1 seq prokMSA_id:54172 TAYNAYA-5 2.15.1.3.13.5569 OTU 1 seq prokMSA_id:2399 clone BURTON-28 2.15.1.3.13.5622 OTU 1 seq prokMSA_id:80973 Arctic sea ice associated ARK10146 2.15.1.3.13.5628 OTU 1 seq prokMSA_id:44039 RSHD3B4 2.15.1.3.13.5630 OTU 2 seqs prokMSA_id:71519 isolate HOS12 Z88574 prokMSA_id:86285 Bacteroidetes clone 1D10 2.15.1.3.13.5659 OTU 1 seq prokMSA_id:27077 Flavobacteriaceae QSSC9L-8 2.15.1.3.13.5663 OTU 1 seq prokMSA_id:83115 Cytophaga sp. E46 2.15.1.3.13.5728 OTU 1 seq prokMSA_id:69822 Cytophaga sp. MBIC04693 2.15.1.3.13.5733 OTU 7 seqs prokMSA_id:53677 Cellulophaga SIC.B8113 prokMSA_id:79769 clone ARKDMS-74 prokMSA_id:80367 clone ARKCH4-88 prokMSA_id:80618 Arctic sea ice ARK10044 prokMSA_id:80944 Arctic sea ice ARK10223 prokMSA_id:81144 Bacteroidetes ANT9105 prokMSA_id:81534 Antarctic sea ice clone ANTXI/4_14-81 2.15.1.3.13.5807 OTU 1 seq prokMSA_id:40211 CFB group FL13A12 2.15.1.3.13.5942 OTU 1 seq prokMSA_id:67323 Flavobacteriaceae str. SW072 2.15.1.3.13.5955 OTU 1 seq prokMSA_id:61970 Flavobacterium sp. V4.MS.29 2.15.1.3.13.5956 OTU 5 seqs prokMSA_id:58646 Flexibacter aggregans strain:IFO 15975 prokMSA_id:70583 Cytophaga sp. KT02ds22 AF235114 prokMSA_id:78926 Flexibacter sp. 2216.15.5 AB094462 prokMSA_id:81311 Arenibacter troitsensis prokMSA_id:96209 Cytophaga sp. EPR 14 AY394872 2.15.1.3.13.5960 OTU 1 seq prokMSA_id:45309 Marine ATAM173a_6 2.15.1.3.13.5971 OTU 13 seqs prokMSA_id:2402 Cytophaga uliginosa str. Zobell 553 ATCC 14397 . M62799 prokMSA_id:46683 Cytophaga sp. KT02ds18 AF235126 prokMSA_id:61123 Zobellia sp. MGP-14 prokMSA_id:67321 Flavobacteriaceae str. SW268 prokMSA_id:80846 Arctic sea ice associated ARK10141 prokMSA_id:83542 Cellulophaga sp. E6 prokMSA_id:83581 Cellulophaga sp. RE2-13 prokMSA_id:83608 Bacteroidetes KMM 3951 prokMSA_id:84346 Marine HP25 prokMSA_id:85064 Bacteroidetes KMM 3949 prokMSA_id:85665 Bacteroidetes KMM 3947 prokMSA_id:86570 Bacteroidetes KMM 3903 prokMSA_id:89246 Cytophaga sp. GE04 AY317149 2.15.1.3.13.5977 OTU 1 seq prokMSA_id:20776 Bacteroidetes clone BIvi22 2.15.1.3.13.6000 OTU 1 seq prokMSA_id:2403 ACAM 210 2.15.1.3.13.6001 OTU 1 seq prokMSA_id:2404 str. IC166 2.15.1.3.13.6002 OTU 1 seq prokMSA_id:2405 clone BURTON-20 2.15.1.3.13.6004 OTU 1 seq prokMSA_id:2406 str. QSSC1-18 2.15.1.3.13.6129 OTU 2 seqs prokMSA_id:39004 Arenibacter latericius KMM 426T prokMSA_id:84611 Arenibacter sp. KMM 3941 2.15.1.3.13.6140 OTU 1 seq prokMSA_id:28646 CFB group MERTZ_0CM_248 2.15.1.3.13.6149 OTU 1 seq prokMSA_id:50504 Marine CFB-group S3 2.15.1.3.13.6161 OTU 3 seqs prokMSA_id:34151 clone 4-Org1-38 prokMSA_id:79592 Vladibacter vitellinus prokMSA_id:93854 Aequorivita sp. 'BSD S2 02' AY259510 2.15.1.3.13.6310 OTU 1 seq prokMSA_id:70274 Zobellia galactanovora 2.15.1.3.14 PSF.TORQUIS_SUBGROUP 56 seqs 2.15.1.3.14.5335 OTU 2 seqs prokMSA_id:2419 Psychroflexus torquis str. 651 ACAM 623 prokMSA_id:2421 Psychroflexus torquis ACAM 627 2.15.1.3.14.5397 OTU 2 seqs prokMSA_id:27823 Cytophaga sp. G22 prokMSA_id:71623 Flavobacterium sp. V4.BE.50 AJ244690 2.15.1.3.14.5404 OTU 8 seqs prokMSA_id:2426 Cytophaga latercula M58769 prokMSA_id:2430 Cytophaga latercula str. Lewin SIO-1 ATCC 23177 . D12665 prokMSA_id:44430 CFB group clone MERTZ_0CM_94 AF425755 prokMSA_id:61118 Cf. Cytophaga sp. MGP-28/AN2 AF530141 prokMSA_id:67317 Flavobacteriaceae str. SW334 prokMSA_id:67318 Flavobacteriaceae str. SW152 prokMSA_id:67319 Flavobacteriaceae str. SW062 prokMSA_id:67320 Flavobacteriaceae str. SW058 2.15.1.3.14.5407 OTU 1 seq prokMSA_id:16835 clone CD2D6 2.15.1.3.14.5430 OTU 1 seq prokMSA_id:24630 marine strain:GY12 2.15.1.3.14.5431 OTU 1 seq prokMSA_id:46475 Cytophaga sp. KT0803 2.15.1.3.14.5436 OTU 4 seqs prokMSA_id:80029 Arctic sea ice ARK9985 prokMSA_id:80722 Arctic sea ice ARK10004 prokMSA_id:80782 Arctic sea ice ARK10129 prokMSA_id:80936 Arctic sea ice ARK10138 2.15.1.3.14.5473 OTU 3 seqs prokMSA_id:74154 Flavobacteriaceae str. SW256 prokMSA_id:85471 Bacteroidetes R43 prokMSA_id:88683 Flavobacteriaceae G812M2 AY298788 2.15.1.3.14.5598 OTU 3 seqs prokMSA_id:61975 Flavobacterium sp. V4.MO.31 prokMSA_id:61980 Flavobacterium sp. V4.BO.21 prokMSA_id:70361 Flavobacterium sp. V4.ME.09 marine isolate 2.15.1.3.14.5697 OTU 1 seq prokMSA_id:49407 Cytophaga sp. 41-DBG2 2.15.1.3.14.5727 OTU 5 seqs prokMSA_id:2424 clone ORGANIC-6. AF142908 prokMSA_id:60400 Psychroflexus sp. LA1 prokMSA_id:62484 CFB group clone LA1-A3N AF513956 prokMSA_id:62485 Flavobacteriaceae clone LA1-B21N AF513959 prokMSA_id:62486 Flavobacteriaceae clone LAS-B39N AF513958 2.15.1.3.14.5801 OTU 5 seqs prokMSA_id:23725 Flavobacterium sp. AS-40 prokMSA_id:46941 Muricauda ruestringensis prokMSA_id:51895 Flavobacterium sp. 7BT prokMSA_id:60401 Flavobacteriaceae LA8 prokMSA_id:70926 Cytophaga sp. MBIC04684 2.15.1.3.14.5859 OTU 1 seq prokMSA_id:22547 Cytophagales CE55 2.15.1.3.14.5904 OTU 4 seqs prokMSA_id:79692 Arctic sea ice ARK10255 prokMSA_id:80980 Arctic sea ice ARK10063 prokMSA_id:81123 Psychroflexus torquis ANT9232b prokMSA_id:81527 Psychroflexus torquis strain ANT9268 2.15.1.3.14.5958 OTU 1 seq prokMSA_id:61974 Flavobacterium sp. V4.BS.09 marine isolate 2.15.1.3.14.5967 OTU 1 seq prokMSA_id:25633 antarctic soil clone bh2.57 2.15.1.3.14.5981 OTU 1 seq prokMSA_id:29202 TAYNAYA-7 2.15.1.3.14.6023 OTU 1 seq prokMSA_id:35551 A16s 2.15.1.3.14.6028 OTU 1 seq prokMSA_id:2411 Flavobacterium salegens DSM 5424 2.15.1.3.14.6040 OTU 1 seq prokMSA_id:2413 str. IC148 2.15.1.3.14.6151 OTU 1 seq prokMSA_id:26072 Cytophaga sp. B12 2.15.1.3.14.6256 OTU 1 seq prokMSA_id:41855 AG 2.15.1.3.14.6258 OTU 1 seq prokMSA_id:42542 Marine BBFL7 2.15.1.3.14.6296 OTU 1 seq prokMSA_id:48628 CFB group kpc113rc 2.15.1.3.14.6321 OTU 5 seqs prokMSA_id:2427 Cytophaga sp. str. J18-M01 prokMSA_id:2428 Cytophaga sp. str. AA8-2. AB017047 prokMSA_id:2429 Cytophaga sp. str. AA8-3. AB017048 prokMSA_id:70738 Marine ALUS253_6 prokMSA_id:79767 Kordia algicida 2.15.1.3.15 PSH.BURTONENSIS_SUBGROUP 64 seqs 2.15.1.3.15.5252 OTU 1 seq prokMSA_id:35713 Saltmarsh clone LCP-72 2.15.1.3.15.5267 OTU 1 seq prokMSA_id:56043 CFB group clone AEGEAN_179 2.15.1.3.15.5268 OTU 1 seq prokMSA_id:27314 Gelidibacter McMurdo.124 2.15.1.3.15.5311 OTU 1 seq prokMSA_id:32923 CFB group clone CD3D3 2.15.1.3.15.5322 OTU 1 seq prokMSA_id:79594 clone ZA3907c 2.15.1.3.15.5330 OTU 1 seq prokMSA_id:74645 flexibacterium Sva0755 2.15.1.3.15.5396 OTU 1 seq prokMSA_id:73211 Marine ATAM173a_3 2.15.1.3.15.5428 OTU 1 seq prokMSA_id:28913 SIC.B9002 2.15.1.3.15.5442 OTU 1 seq prokMSA_id:22322 clone KS66 2.15.1.3.15.5464 OTU 1 seq prokMSA_id:50817 Flavobacteriaceae clone GOBB3-CL282 2.15.1.3.15.5488 OTU 1 seq prokMSA_id:20283 BURTON-50 2.15.1.3.15.5517 OTU 1 seq prokMSA_id:26631 Gelidibacter sp. QSSC5-7 2.15.1.3.15.5518 OTU 1 seq prokMSA_id:2447 clone BURTON-52 2.15.1.3.15.5521 OTU 1 seq prokMSA_id:72771 Flavobacteriaceae str. SW269 2.15.1.3.15.5548 OTU 1 seq prokMSA_id:2452 str. SW17 2.15.1.3.15.5550 OTU 1 seq prokMSA_id:49506 Marine MBIC1357 strain:MBIC1357 2.15.1.3.15.5559 OTU 1 seq prokMSA_id:2460 clone BURTON-32 2.15.1.3.15.5561 OTU 1 seq prokMSA_id:2461 clone BURTON-13 2.15.1.3.15.5570 OTU 1 seq prokMSA_id:2462 Flavobacterium 5N-3 str. 5N-3 2.15.1.3.15.5571 OTU 1 seq prokMSA_id:2463 Cytophaga sp. str. BD2-17 2.15.1.3.15.5589 OTU 1 seq prokMSA_id:78012 clone 2112 2.15.1.3.15.5591 OTU 1 seq prokMSA_id:36868 Cytophagales Arctic97A-14 2.15.1.3.15.5636 OTU 3 seqs prokMSA_id:2438 Psychroserpens burtonensis ACAM 188 prokMSA_id:2445 Psychroserpens burtonensis ACAM 167 prokMSA_id:2446 Psychroserpens burtonensis ACAM 181 2.15.1.3.15.5657 OTU 1 seq prokMSA_id:18364 Cytophagales Arctic97A-13 2.15.1.3.15.5662 OTU 3 seqs prokMSA_id:18627 strain R7695 AJ278780 prokMSA_id:25304 Km5 AF367846 prokMSA_id:26032 clone CTD28B 2.15.1.3.15.5688 OTU 1 seq prokMSA_id:86531 Bacteroidetes KMM 3912 2.15.1.3.15.5793 OTU 3 seqs prokMSA_id:22447 Cytophaga sp. KT11ds2 prokMSA_id:61968 Flavobacterium sp. V4.MS.12 prokMSA_id:85151 Cytophaga sp. 4301-10/1 isolate 4301-10/1 2.15.1.3.15.5838 OTU 3 seqs prokMSA_id:2443 Gelidibacter algens str. C8ST5 ACAM 536 prokMSA_id:2444 Gelidibacter algens str. A296 ACAM 551 prokMSA_id:17502 Gelidibacter algens ACAM 550 2.15.1.3.15.5896 OTU 2 seqs prokMSA_id:60625 CFB group clone AEGEAN_129 prokMSA_id:60635 CFB group clone AEGEAN_136 2.15.1.3.15.5903 OTU 1 seq prokMSA_id:68987 Cytophagales MB11E04 ; tRNA-Ile and tRNA-Ala genes complete 2.15.1.3.15.5914 OTU 13 seqs prokMSA_id:21203 Gelidibacter mesophilus strain 2SM28 AJ344134 prokMSA_id:25577 Gelidibacter mesophilus strain 2SM29T AJ344133 prokMSA_id:61113 Cf. Cytophaga sp. MGP-67 prokMSA_id:79768 Bacteroidetes KMM 3901 prokMSA_id:79974 clone ARKIA-137 prokMSA_id:80530 Arctic sea ice ARK10267 prokMSA_id:81005 Arctic sea ice ARK10217 AF468427 prokMSA_id:81008 Arctic sea ice associated ARK10144 prokMSA_id:81033 Psychroserpens sp. ARK10236 AY167341 prokMSA_id:81654 clone KD1-108 AY218549 prokMSA_id:82874 Bacteroidetes E42 prokMSA_id:83782 Pseudocytophaga algae KMM 3557 prokMSA_id:93315 Gelidibacter sp. 'BSD S1 18' AY259506 2.15.1.3.15.5953 OTU 1 seq prokMSA_id:80559 clone ARKDMS-33 2.15.1.3.15.5992 OTU 2 seqs prokMSA_id:24934 Cytophaga marinoflava prokMSA_id:82233 Cytophaga marinoflava strain ANT9103 2.15.1.3.15.6044 OTU 1 seq prokMSA_id:85666 Bacteroidetes clone 2D9 2.15.1.3.15.6052 OTU 1 seq prokMSA_id:2450 marine snow associated clone agg13 2.15.1.3.15.6093 OTU 1 seq prokMSA_id:17872 marine ZD0203 2.15.1.3.15.6208 OTU 1 seq prokMSA_id:67313 Flavobacteriaceae str. SW325 2.15.1.3.15.6221 OTU 1 seq prokMSA_id:34569 Cytophagales Arctic96AD-4 2.15.1.3.15.6241 OTU 2 seqs prokMSA_id:70870 Abyssal strain AIII4 AF254114 prokMSA_id:71563 Abyssal strain AII3 2.15.1.3.15.6242 OTU 1 seq prokMSA_id:46707 Psychroserpens aff. burtonensis 2.15.1.3.15.6269 OTU 1 seq prokMSA_id:61189 clone UC1 2.15.1.3.16 ENVIRONMENTAL_CLONE_FL7_SUBGROUP 7 seqs 2.15.1.3.16.5757 OTU 1 seq prokMSA_id:51701 Cytophagales Arctic96B-24 2.15.1.3.16.6104 OTU 3 seqs prokMSA_id:85631 Bacteroidetes clone CF20 prokMSA_id:86070 Bacteroidetes clone CF91 prokMSA_id:86177 Bacteroidetes clone CF6 2.15.1.3.16.6142 OTU 3 seqs prokMSA_id:26293 CS_B009 prokMSA_id:77994 Cytophagales clone Hyd24-17 prokMSA_id:78061 Cytophagales clone Hyd24-39 2.15.1.4 CYTOPHAGA_GROUP_II 30 seqs 2.15.1.4.5257 OTU 1 seq prokMSA_id:80463 clone KD3-67 2.15.1.4.5309 OTU 1 seq prokMSA_id:71827 clone 33-PA63B98 2.15.1.4.5313 OTU 1 seq prokMSA_id:28458 CFB group MERTZ_2CM_101 2.15.1.4.5315 OTU 1 seq prokMSA_id:66632 Cytophagaceae clone 1-13 2.15.1.4.5355 OTU 1 seq prokMSA_id:66951 clone SHA-5 2.15.1.4.5356 OTU 1 seq prokMSA_id:77203 flavobacterium sp. clone JG37-AG-150 2.15.1.4.5481 OTU 1 seq prokMSA_id:77721 Cytophagales clone Hyd89-72 2.15.1.4.5500 OTU 1 seq prokMSA_id:78229 clone Hyd24-66 2.15.1.4.5583 OTU 1 seq prokMSA_id:2471 clone BURTON-31 2.15.1.4.5586 OTU 1 seq prokMSA_id:2477 str. Koll-22 2.15.1.4.5585 OTU 1 seq prokMSA_id:2473 clone BURTON-2 2.15.1.4.5587 OTU 1 seq prokMSA_id:2478 Cytophaga sp. str. JTB250 2.15.1.4.5638 OTU 1 seq prokMSA_id:62694 Bacteroidetes clone ML635J-44 2.15.1.4.5637 OTU 1 seq prokMSA_id:77100 clone BLIB-51 2.15.1.4.5649 OTU 1 seq prokMSA_id:22127 CFB group kpj60f 2.15.1.4.5671 OTU 1 seq prokMSA_id:85577 Bacteroidetes clone CF96 2.15.1.4.5678 OTU 1 seq prokMSA_id:36986 MERTZ_2CM_1 2.15.1.4.5703 OTU 1 seq prokMSA_id:59793 clone BB2_87 2.15.1.4.5707 OTU 1 seq prokMSA_id:45081 Bacteroidetes clone ST-12K19 2.15.1.4.5784 OTU 1 seq prokMSA_id:83084 rumen clone BS11 2.15.1.4.5787 OTU 1 seq prokMSA_id:62699 Bacteroidetes clone ML635J-1 2.15.1.4.5785 OTU 2 seqs prokMSA_id:62696 Bacteroidetes clone ML635J-56 AF507862 prokMSA_id:62698 Bacteroidetes clone ML623J-20 2.15.1.4.5957 OTU 1 seq prokMSA_id:57464 CFB group clone P. palm C/A 20 2.15.1.4.5988 OTU 1 seq prokMSA_id:42624 GR-WP33-68 clone GR-WP33-68 2.15.1.4.6082 OTU 1 seq prokMSA_id:33969 equine intestinal clone:YT26 2.15.1.4.6099 OTU 1 seq prokMSA_id:22467 CS_B047 2.15.1.4.6144 OTU 1 seq prokMSA_id:28868 clone BIfcii9 2.15.1.4.6285 OTU 1 seq prokMSA_id:25565 CFB group MERTZ_0CM_154 2.15.1.4.6324 OTU 1 seq prokMSA_id:82061 clone KM02 2.15.2 SPHINGOBACTERIUM_GROUP 86 seqs 2.15.2.5250 OTU 1 seq prokMSA_id:42382 Pedobacter saltans strain DSM 12145T 2.15.2.5274 OTU 1 seq prokMSA_id:17550 Wuba47 2.15.2.5279 OTU 1 seq prokMSA_id:19131 Bacteroidetes clone BIsii5 2.15.2.5278 OTU 1 seq prokMSA_id:22691 Sphingobacterium faecium strain DSM 11690T 2.15.2.5337 OTU 1 seq prokMSA_id:37703 GR-Sh2-12 clone GR-Sh2-12 2.15.2.5402 OTU 1 seq prokMSA_id:71779 CFB group clone TAF-A147 2.15.2.5432 OTU 1 seq prokMSA_id:46477 Flavobacterium mizutaii strain DSM 11724T 2.15.2.5444 OTU 1 seq prokMSA_id:67493 Sphingobacteriaceae str. EP211 2.15.2.5459 OTU 2 seqs prokMSA_id:78203 CFB group clone:APe2_8 prokMSA_id:93552 Pedobacter sp. An13 isolate An13 AJ551152 2.15.2.5492 OTU 1 seq prokMSA_id:68384 Sphingobacterium sp. HC-6155 2.15.2.5513 OTU 2 seqs prokMSA_id:26222 Pedobacter sp. LMG 10351 prokMSA_id:26343 Flavobacterium-like sp. oral clone AZ123 AF385549 2.15.2.5519 OTU 1 seq prokMSA_id:65554 yard-trimming-compost clone S-44 2.15.2.5541 OTU 1 seq prokMSA_id:50974 KF-Gitt2-34 2.15.2.5582 OTU 1 seq prokMSA_id:40435 Sphingobacterium sp. S3 2.15.2.5601 OTU 6 seqs prokMSA_id:2491 Sphingobacterium multivorum str. OM-A8. AB020205 prokMSA_id:36348 Sphingobacterium sp. clone:OS1L-21 prokMSA_id:63191 Sphingobacterium sp. p11E AJ496037 prokMSA_id:77995 Sphingobacterium sp. TUT1026 prokMSA_id:79272 Sphingobacterium multivorum prokMSA_id:79519 Sphingobacterium multivorum 2.15.2.5605 OTU 1 seq prokMSA_id:77459 Sphingobacterium sp. SAFR-022 2.15.2.5611 OTU 1 seq prokMSA_id:19806 CFB group clone SM1C08 2.15.2.5613 OTU 1 seq prokMSA_id:2485 str. QSSC5-1 2.15.2.5614 OTU 1 seq prokMSA_id:2486 str. MBIC4147 2.15.2.5616 OTU 1 seq prokMSA_id:2488 clone 49511 2.15.2.5633 OTU 1 seq prokMSA_id:2497 clone BURTON-43 2.15.2.5648 OTU 3 seqs prokMSA_id:2490 Sphingobacterium thalpophilum M58779 prokMSA_id:2499 Sphingobacterium thalpophilum prokMSA_id:26308 Sphingobacterium thalpophilum strain DSM 11723T AJ438177 2.15.2.5658 OTU 1 seq prokMSA_id:33633 Agricultural soil clone SC-I-70 2.15.2.5674 OTU 1 seq prokMSA_id:74255 clone BIsi7 2.15.2.5699 OTU 1 seq prokMSA_id:47809 Pedobacter sp. KP-2 2.15.2.5747 OTU 3 seqs prokMSA_id:33665 Flavobacterium sp. jshs26 prokMSA_id:37473 Potato plant root clone RC-III-9 AJ252710 prokMSA_id:47105 Flavobacterium sp. C204B AF375835 2.15.2.5792 OTU 1 seq prokMSA_id:65426 clone 47 2.15.2.5840 OTU 1 seq prokMSA_id:31489 rape rhizosphere wr0012 2.15.2.5858 OTU 1 seq prokMSA_id:24148 Flavobacterium sp. 36 2.15.2.5878 OTU 3 seqs prokMSA_id:2484 Sphingobacterium OM-E81 str. OM-E81 prokMSA_id:29206 Pedobacter piscium strain DSM 11725T prokMSA_id:39088 Pedobacter cryoconitis strain DSM 14825T 2.15.2.5913 OTU 17 seqs prokMSA_id:20232 Pedobacter sp. LMG 10342 AF329966 prokMSA_id:36195 Pedobacter sp. LMG 10354 AF329965 prokMSA_id:36521 Pedobacter sp. LMG 9527 AF329964 prokMSA_id:44075 Bacteroidetes clone BIji46 prokMSA_id:46956 Sphingobacterium-like sp. PC1.9 strain PC1.9 X89912 prokMSA_id:60340 clone Glu58 prokMSA_id:67490 Sphingobacteriaceae str. EP316 prokMSA_id:70559 Pedobacter sp. oral clone AV100 AF385531 prokMSA_id:75974 Flavobacterium sp. MTN11 prokMSA_id:81220 clone KD5-103 prokMSA_id:82880 Cytophagales clone TLT005 AY250892 prokMSA_id:85313 Cytophagales clone BPU107 AY250857 prokMSA_id:91125 Bacteroidetes LC9 AY337604 prokMSA_id:91480 Bacteroidetes EC2 AY337599 prokMSA_id:95052 Pedobacter sp. HHS22 strain HHS22 AJ583425 prokMSA_id:96908 Bacteroidetes clone SW35 AJ575721 prokMSA_id:98093 Bacteroidetes clone SW66 AJ575725 2.15.2.6136 OTU 1 seq prokMSA_id:31688 Bacteroidetes clone BIti3 2.15.2.6158 OTU 1 seq prokMSA_id:59539 CAGY10 strain CAGY10 2.15.2.6168 OTU 1 seq prokMSA_id:83335 clone TLM11/TLMdgge04 2.15.2.6174 OTU 1 seq prokMSA_id:43436 Bacteroidetes clone BIti35 2.15.2.6177 OTU 1 seq prokMSA_id:26452 clone Ebpr7 2.15.2.6185 OTU 1 seq prokMSA_id:66760 Sphingobacterium spiritivorum strain DSM 2582 2.15.2.6188 OTU 2 seqs prokMSA_id:46199 CFB group clone TAF-A198 prokMSA_id:73110 CFB group clone TAF-A194 2.15.2.6191 OTU 1 seq prokMSA_id:30987 CFB group clone pA47 2.15.2.6222 OTU 1 seq prokMSA_id:74412 CFB group clone TAF-A131 2.15.2.6231 OTU 1 seq prokMSA_id:82023 clone KD1-39 2.15.2.6247 OTU 4 seqs prokMSA_id:2483 Bacteroides b-17BO str. b-17BO. AF070444 prokMSA_id:28059 Tuber borchii symbiont b-Z43 prokMSA_id:51029 Tuber borchii symbiont b-10RA prokMSA_id:51168 Tuber borchii symbiont b-1BO AF233293 2.15.2.6250 OTU 1 seq prokMSA_id:56235 Flexibacter canadensis strain:IFO 15130 2.15.2.6273 OTU 1 seq prokMSA_id:52137 Rhizosphere soil isolate RSI-35 2.15.2.6272 OTU 6 seqs prokMSA_id:2481 Pedobacter heparinus str. HIM 762-3 ATCC 13125 prokMSA_id:28476 clone GL184.1 prokMSA_id:39221 clone GL182.29 prokMSA_id:40607 Pedobacter africanus strain DSM 12126T prokMSA_id:52839 Pedobacter heparinus strain DSM 2366T prokMSA_id:68958 clone GL182.33 2.15.2.6289 OTU 1 seq prokMSA_id:32790 CFB group MERTZ_0CM_182 2.15.2.6303 OTU 1 seq prokMSA_id:85393 clone TLM10/TLMdgge01 2.15.2.6314 OTU 1 seq prokMSA_id:43819 Bacteroidetes clone BIsi29 2.15.4 LEWINELLA_GROUP 158 seqs 2.15.4.2 FLX.SANCTI_SUBGROUP 103 seqs 2.15.4.2.5254 OTU 1 seq prokMSA_id:22060 clone Ebpr5 2.15.4.2.5260 OTU 1 seq prokMSA_id:81789 clone KD6-102 2.15.4.2.5266 OTU 1 seq prokMSA_id:27437 #0319-2D13 2.15.4.2.5281 OTU 1 seq prokMSA_id:2521 Chitinophaga pinensis ACM 2034 2.15.4.2.5283 OTU 1 seq prokMSA_id:70346 Cytophagales clone 09 2.15.4.2.5284 OTU 1 seq prokMSA_id:2522 unnamed organism 2.15.4.2.5288 OTU 1 seq prokMSA_id:2523 unnamed organism 2.15.4.2.5289 OTU 1 seq prokMSA_id:17675 clone BIjii2 2.15.4.2.5314 OTU 1 seq prokMSA_id:52719 FukuN24 2.15.4.2.5334 OTU 1 seq prokMSA_id:81227 clone KD3-58 2.15.4.2.5354 OTU 3 seqs prokMSA_id:22940 FukuN21 prokMSA_id:50093 isolate AH47 prokMSA_id:72978 Flexibacter sp. CF 1 2.15.4.2.5389 OTU 1 seq prokMSA_id:82843 Flexibacter sp. MDA2495 2.15.4.2.5387 OTU 1 seq prokMSA_id:16825 FukuN47 2.15.4.2.5409 OTU 1 seq prokMSA_id:43204 clone Ebpr2 2.15.4.2.5449 OTU 1 seq prokMSA_id:37034 Bacteroidetes clone BIfcii37 2.15.4.2.5463 OTU 2 seqs prokMSA_id:58621 Flexibacter sancti strain:IFO 16034 prokMSA_id:58639 Flexibacter filiformis strain:IFO 15056 2.15.4.2.5491 OTU 1 seq prokMSA_id:50373 GKS2-106 2.15.4.2.5564 OTU 1 seq prokMSA_id:23809 clone Ebpr3 2.15.4.2.5567 OTU 1 seq prokMSA_id:55504 CS57 2.15.4.2.5576 OTU 1 seq prokMSA_id:20042 PHOS-HE31 2.15.4.2.5581 OTU 1 seq prokMSA_id:31613 Agricultural soil clone SC-I-12 2.15.4.2.5619 OTU 1 seq prokMSA_id:81764 Bacteroidetes clone VC10 2.15.4.2.5640 OTU 1 seq prokMSA_id:2519 Flexibacter filiformis str. FX e 1 ATCC 29495 2.15.4.2.5642 OTU 1 seq prokMSA_id:81937 clone KD8-73 2.15.4.2.5669 OTU 4 seqs prokMSA_id:25133 clone GL182.1 prokMSA_id:29854 clone GL182.3 prokMSA_id:50765 AT425_EubA6 prokMSA_id:68460 Symbiont cf. Flavobacterium of Acromyrmex octospinosus 2.15.4.2.5722 OTU 1 seq prokMSA_id:31329 CFB group clone TAF-B76 2.15.4.2.5772 OTU 1 seq prokMSA_id:82403 clone KD2-128 2.15.4.2.5832 OTU 1 seq prokMSA_id:58374 Haliscomenobacter sp. clone SBRT303 2.15.4.2.5857 OTU 1 seq prokMSA_id:2508 str. NIH 2.15.4.2.5872 OTU 1 seq prokMSA_id:46428 Agricultural soil clone SC-I-91 2.15.4.2.5884 OTU 6 seqs prokMSA_id:25213 rape rhizosphere wr0053 AJ295507 prokMSA_id:25227 rape rhizosphere wr0060 prokMSA_id:35540 rape rhizosphere wr0011 AJ295472 prokMSA_id:37328 rape rhizosphere wr0003 AJ295464 prokMSA_id:39882 rape rhizosphere wr0002 AJ295463 prokMSA_id:42289 rape rhizosphere wr0086 AJ295528 2.15.4.2.5888 OTU 33 seqs prokMSA_id:39496 Bacteroidetes clone BIjiii34 prokMSA_id:74932 isolate ENV-MO-007 AF538339 prokMSA_id:76380 isolate ENV-MO-004 AF538336 prokMSA_id:79291 clone KD6-86 prokMSA_id:80170 Bacteroidetes clone W3-1E AY192292 prokMSA_id:81076 clone KD8-102 prokMSA_id:81081 clone KD3-74 prokMSA_id:81165 clone KD3-83 prokMSA_id:81265 clone KD8-106 AY218679 prokMSA_id:81417 clone KD4-68 prokMSA_id:81462 clone KD8-75 prokMSA_id:81521 clone KD4-25 prokMSA_id:81628 clone KD3-77 AY218616 prokMSA_id:81668 clone KD4-19 prokMSA_id:81734 clone KD2-72 prokMSA_id:81785 clone KD2-78 prokMSA_id:81804 clone KD9-156 prokMSA_id:81845 clone KD3-81 prokMSA_id:81847 clone KD6-82 prokMSA_id:81875 clone KD6-125 prokMSA_id:81935 clone KD7-36 AY218708 prokMSA_id:82060 clone KD6-69 prokMSA_id:82091 clone KD2-41 prokMSA_id:82095 clone KD6-47 AY218761 prokMSA_id:82129 clone KD5-2 prokMSA_id:82169 clone KD9-68 prokMSA_id:82204 clone KD4-13 prokMSA_id:82231 clone KD8-115 prokMSA_id:82277 clone KD7-116 prokMSA_id:82316 clone KD9-169 prokMSA_id:82360 clone KD6-136 prokMSA_id:84350 clone D143 AY274148 prokMSA_id:85906 clone D124 AY274132 2.15.4.2.5925 OTU 1 seq prokMSA_id:16356 earthworm cast clone C065 2.15.4.2.5948 OTU 1 seq prokMSA_id:42740 soil clone 760-2 2.15.4.2.5970 OTU 1 seq prokMSA_id:40073 FukuS59 2.15.4.2.5987 OTU 1 seq prokMSA_id:29927 Rhizosphere soil clone RSC-II-81 2.15.4.2.6003 OTU 1 seq prokMSA_id:47936 Flavobacterium-like sp. oral clone AZ105 2.15.4.2.6020 OTU 1 seq prokMSA_id:81900 clone KD5-90 2.15.4.2.6049 OTU 1 seq prokMSA_id:59355 clone HP1B19 2.15.4.2.6050 OTU 1 seq prokMSA_id:62965 clone LPB08 2.15.4.2.6111 OTU 2 seqs prokMSA_id:27005 FukuN23 prokMSA_id:96745 Bacteroidetes clone SW56 AJ575723 2.15.4.2.6123 OTU 1 seq prokMSA_id:58633 Flexibacter japonensis strain:IFO 16041 2.15.4.2.6130 OTU 1 seq prokMSA_id:47447 Potato plant root clone RC-III-62 2.15.4.2.6143 OTU 1 seq prokMSA_id:85194 clone TLM09/TLMdgge12a 2.15.4.2.6148 OTU 1 seq prokMSA_id:47339 clone Ebpr1 2.15.4.2.6150 OTU 1 seq prokMSA_id:71851 Flexibacter cf. sancti 2.15.4.2.6167 OTU 1 seq prokMSA_id:19885 Metal-contaminated soil clone K20-37 2.15.4.2.6171 OTU 1 seq prokMSA_id:32581 Dipareforma spartinacae 2.15.4.2.6196 OTU 1 seq prokMSA_id:26459 Bacteroidetes clone BIti15 2.15.4.2.6243 OTU 1 seq prokMSA_id:42738 Flexibacter sp. clone:TSL-25 2.15.4.2.6244 OTU 1 seq prokMSA_id:61843 Bacteroidetes clone CLi112 2.15.4.2.6245 OTU 1 seq prokMSA_id:31404 FukuN54 2.15.4.2.6267 OTU 4 seqs prokMSA_id:70436 Cilia-associated respiratory 96-1590 prokMSA_id:71059 Cilia-associated respiratory 246-57 AF316116 prokMSA_id:71156 Cilia-associated respiratory 95-15405 AF316117 prokMSA_id:71903 Cilia-associated respiratory 243-54 AF316115 2.15.4.2.6281 OTU 1 seq prokMSA_id:34759 clone cvf122192 2.15.4.2.6320 OTU 1 seq prokMSA_id:18670 clone Tc12 2.15.4.2.6325 OTU 1 seq prokMSA_id:2512 Flavobacterium ferrugineum ATCC 13524 2.15.4.3 LEW.NIGRICANS_SUBGROUP 55 seqs 2.15.4.3.5310 OTU 1 seq prokMSA_id:70292 CFB group clone TAF-B80 2.15.4.3.5328 OTU 1 seq prokMSA_id:2538 clone MK04 2.15.4.3.5327 OTU 1 seq prokMSA_id:2536 clone MK07 2.15.4.3.5344 OTU 1 seq prokMSA_id:2540 Cytophaga sp. str. JTB251 2.15.4.3.5347 OTU 1 seq prokMSA_id:73931 GKS2-217 2.15.4.3.5348 OTU 1 seq prokMSA_id:2546 Lewinella nigricans str. SS-2 ATCC 23147 2.15.4.3.5359 OTU 1 seq prokMSA_id:2549 clone QSSC9L-2 2.15.4.3.5358 OTU 1 seq prokMSA_id:2548 clone EKHO-12 2.15.4.3.5375 OTU 1 seq prokMSA_id:2550 Lewinella cohaerens str. II-2 ATCC 23123 2.15.4.3.5378 OTU 1 seq prokMSA_id:2551 Lewinella persica str. T-3 ATCC 23167 2.15.4.3.5382 OTU 1 seq prokMSA_id:2556 clone BURTON-51 2.15.4.3.5381 OTU 1 seq prokMSA_id:2555 marine snow associated clone agg32 2.15.4.3.5380 OTU 1 seq prokMSA_id:2554 clone LD1 2.15.4.3.5384 OTU 1 seq prokMSA_id:2558 clone QSSC9L-1 2.15.4.3.5383 OTU 1 seq prokMSA_id:2557 clone BURTON-23 2.15.4.3.5466 OTU 1 seq prokMSA_id:72740 clone KS69 2.15.4.3.5477 OTU 2 seqs prokMSA_id:2534 clone MK09 prokMSA_id:2539 clone MK11 2.15.4.3.5497 OTU 2 seqs prokMSA_id:29244 Saprospira sp. SS95-4 prokMSA_id:30366 Saprospira sp. SS92-11 2.15.4.3.5558 OTU 1 seq prokMSA_id:42683 EKHO-10 2.15.4.3.5560 OTU 1 seq prokMSA_id:44289 Marine MSC1 2.15.4.3.5592 OTU 2 seqs prokMSA_id:39161 clone Ebpr18 prokMSA_id:41847 clone Ebpr17 2.15.4.3.5617 OTU 3 seqs prokMSA_id:29419 CFB group clone SM2D04 AF445721 prokMSA_id:33230 CFB group clone SM1E03 prokMSA_id:87377 Bacteroidetes clone FL08B07 AY293499 2.15.4.3.5654 OTU 1 seq prokMSA_id:63062 Saprospira grandis 2.15.4.3.5677 OTU 1 seq prokMSA_id:50627 BA7 2.15.4.3.5743 OTU 1 seq prokMSA_id:44087 ACE-3 2.15.4.3.5798 OTU 1 seq prokMSA_id:29118 Lewinella ARCTIC.161 2.15.4.3.5829 OTU 1 seq prokMSA_id:2563 clone BS2 2.15.4.3.5845 OTU 4 seqs prokMSA_id:2541 clone LD2 prokMSA_id:2542 clone LD30 prokMSA_id:61777 clone Med0-02 prokMSA_id:71535 clone Urk0-01 AJ416169 2.15.4.3.5853 OTU 1 seq prokMSA_id:33318 Lewinella SIC.165 2.15.4.3.5996 OTU 1 seq prokMSA_id:2535 clone MK24 2.15.4.3.6030 OTU 1 seq prokMSA_id:27657 CFB group clone SM1A07 2.15.4.3.6036 OTU 1 seq prokMSA_id:35871 PHOS-HE35 2.15.4.3.6051 OTU 1 seq prokMSA_id:19837 Bacteroidetes clone BIhii16 2.15.4.3.6061 OTU 1 seq prokMSA_id:52545 Bacteroidetes clone BIjiii32 2.15.4.3.6199 OTU 1 seq prokMSA_id:27029 PHOS-HE45 2.15.4.3.6249 OTU 3 seqs prokMSA_id:2533 Haliscomenobacter hydrossis M58790 prokMSA_id:76801 clone HC-49P prokMSA_id:79482 clone csbio160175 2.15.4.3.6323 OTU 9 seqs prokMSA_id:2531 Candidatus Magnospira bakii prokMSA_id:2532 Candidatus Magnospira bakii prokMSA_id:2559 Candidatus Magnospira bakii prokMSA_id:2560 Candidatus Magnospira bakii prokMSA_id:2561 Candidatus Magnospira bakii prokMSA_id:2562 Candidatus Magnospira bakii prokMSA_id:21458 Candidatus Magnospira bakii clone BM09 prokMSA_id:23993 Candidatus Magnospira bakii clone BM6 prokMSA_id:50421 Candidatus Magnospira bakii clone BM18 2.15.5 PERSICOBACTER_GROUP 17 seqs 2.15.5.5312 OTU 1 seq prokMSA_id:44553 clone cvf122070 2.15.5.5542 OTU 4 seqs prokMSA_id:66029 Cytophaga sp. I-1787 prokMSA_id:66030 Cytophaga sp. I-976 AB073594 prokMSA_id:66031 Cytophaga sp. I-482 AB073593 prokMSA_id:70072 Cytophaga sp. I-1789 AB073596 2.15.5.5682 OTU 1 seq prokMSA_id:66996 Reichenbachia agaroperforata 2.15.5.5740 OTU 1 seq prokMSA_id:83725 Cytophagales clone FBP292 2.15.5.5839 OTU 1 seq prokMSA_id:2569 Flexithrix dorotheae ATCC 23163 2.15.5.5866 OTU 1 seq prokMSA_id:2574 Taxeobacter ocellatus str. Myx2105 2.15.5.5869 OTU 1 seq prokMSA_id:2575 Taxeobacter ocellatus str. Txo1 2.15.5.5870 OTU 1 seq prokMSA_id:2577 Cytophaga sp. str. JTB248 2.15.5.5951 OTU 3 seqs prokMSA_id:79775 CFB group clone ML615J-4 AF449785 prokMSA_id:80577 CFB group clone ML513M-12 prokMSA_id:80853 CFB group clone ML615J-16 AF449783 2.15.5.5999 OTU 1 seq prokMSA_id:41046 clone cvf122197 2.15.5.6055 OTU 1 seq prokMSA_id:65682 soil clone C0108 2.15.5.6084 OTU 1 seq prokMSA_id:58610 Microscilla arenaria strain:IFO 15982 2.15.6 CY.AURANTIACA_GROUP 177 seqs 2.15.6.5286 OTU 1 seq prokMSA_id:29165 Unknown organism 0411 2.15.6.5304 OTU 1 seq prokMSA_id:25963 Acanthamoeba sp. TUMSJ-321 2.15.6.5305 OTU 3 seqs prokMSA_id:2614 IFAM 2074 prokMSA_id:2615 IFAM 3211 prokMSA_id:2618 IFAM 3359 2.15.6.5307 OTU 1 seq prokMSA_id:58606 Microscilla sericea strain:IFO 16561 2.15.6.5308 OTU 1 seq prokMSA_id:74081 CFB group clone TAF-A99 2.15.6.5321 OTU 7 seqs prokMSA_id:35716 isolate AH57 prokMSA_id:67489 Flectobacillus sp. EP293 prokMSA_id:72722 Flectobacillus sp. Isolate GWF23A AJ011696 prokMSA_id:77370 Flectobacillus speluncae strain GWF20B prokMSA_id:77393 Arcocella aquatica strain NO-502T prokMSA_id:77560 Flectobacillus speluncae strain GWF20C prokMSA_id:91727 H22 AY345549 2.15.6.5345 OTU 1 seq prokMSA_id:2601 clone BURTON-24 2.15.6.5346 OTU 1 seq prokMSA_id:18766 Flexibacter sp. QSSC9L-9 2.15.6.5357 OTU 1 seq prokMSA_id:58624 Flexibacter ruber strain:IFO 16677 2.15.6.5364 OTU 6 seqs prokMSA_id:71214 Cyclobacterium sp. V4.MS.32 prokMSA_id:80523 Arctic sea ice ARK10280 prokMSA_id:85114 Antarctic R-9286 strain R-9286 prokMSA_id:93224 Rhodovirga antarctica strain R-10710 AJ577141 prokMSA_id:93561 Rhodovirga antarctica strain R-9286 AJ577267 prokMSA_id:94046 Rhodovirga antarctica strain R-11427 AJ577142 2.15.6.5365 OTU 2 seqs prokMSA_id:18798 Cytophagales clone PRD01a001B prokMSA_id:28897 Cytophagales clone 30 2.15.6.5368 OTU 2 seqs prokMSA_id:58616 Flexibacter tractuosus strain:IFO 15989 prokMSA_id:58617 Flexibacter tractuosus strain:IFO 15981 2.15.6.5372 OTU 2 seqs prokMSA_id:76741 clone HC-2 prokMSA_id:82467 clone BIOEST-8 2.15.6.5405 OTU 2 seqs prokMSA_id:42106 MC-2 prokMSA_id:48801 KEppib35 2.15.6.5416 OTU 4 seqs prokMSA_id:82506 Spirosoma escalantus strain HDK691 prokMSA_id:83668 Spirosoma escalantus strain HDK627 prokMSA_id:83691 Spirosoma escalantus strain HDK201 prokMSA_id:85731 Spirosoma linguale 2.15.6.5520 OTU 2 seqs prokMSA_id:20292 Hymenobacter sp. clone KL-2-4-9 prokMSA_id:42223 Hymenobacter sp. clone KL-2-4-2 2.15.6.5522 OTU 1 seq prokMSA_id:40349 Hymenobacter sp. clone KL-26-2-11 2.15.6.5545 OTU 1 seq prokMSA_id:24449 Hymenobacter group clone KL-37-1-8 2.15.6.5547 OTU 1 seq prokMSA_id:66032 Cytophaga sp. T-561 2.15.6.5566 OTU 1 seq prokMSA_id:82548 Flexibacteraceae IMSNU 14012 2.15.6.5595 OTU 1 seq prokMSA_id:77448 Taxeobacter sp. SAFR-023 2.15.6.5602 OTU 1 seq prokMSA_id:59812 clone BB2_75 2.15.6.5655 OTU 1 seq prokMSA_id:26841 KEppib45 2.15.6.5667 OTU 1 seq prokMSA_id:81798 clone KD6-118 2.15.6.5701 OTU 1 seq prokMSA_id:19323 CFB groupbacterium NAC60-3 2.15.6.5729 OTU 1 seq prokMSA_id:77550 Taxeobacter sp. SAFR-033 2.15.6.5744 OTU 1 seq prokMSA_id:26447 CFB group clone SM1E06 2.15.6.5748 OTU 1 seq prokMSA_id:2604 Taxeobacter gelupurpurascens str. Txg1 2.15.6.5751 OTU 1 seq prokMSA_id:2605 Taxeobacter Txc1 str. Txc1 2.15.6.5754 OTU 1 seq prokMSA_id:2608 unnamed organism 2.15.6.5755 OTU 1 seq prokMSA_id:53303 clone KS84 2.15.6.5775 OTU 1 seq prokMSA_id:23225 Hymenobacter sp. MJ1 2.15.6.5773 OTU 1 seq prokMSA_id:25907 clone cvf122218 2.15.6.5780 OTU 1 seq prokMSA_id:36284 Microscilla sp. isolate PRLIST05 2.15.6.5794 OTU 1 seq prokMSA_id:2612 clone CLEAR-1 2.15.6.5796 OTU 1 seq prokMSA_id:74295 CFB group clone TAF-B100 2.15.6.5799 OTU 1 seq prokMSA_id:60633 CFB group clone AEGEAN_150 2.15.6.5805 OTU 1 seq prokMSA_id:2617 IFAM 3359 2.15.6.5842 OTU 1 seq prokMSA_id:45409 Agricultural soil isolate SI-11 2.15.6.5849 OTU 1 seq prokMSA_id:71338 CFB group clone TAF-A119 2.15.6.5879 OTU 1 seq prokMSA_id:19038 Hymenobacter group clone KL-2-5-13 2.15.6.5881 OTU 1 seq prokMSA_id:42147 Hailaer soda lake Z3 2.15.6.5891 OTU 36 seqs prokMSA_id:17682 Hymenobacter group clone KL-11-1-4 prokMSA_id:18171 Hymenobacter group clone KL-114-2-8 prokMSA_id:18440 Hymenobacter group clone KL-13-4-2 prokMSA_id:18647 Hymenobacter group clone KL-114-2-1 prokMSA_id:18835 Hymenobacter group clone KL-111-2-4 prokMSA_id:19707 Hymenobacter group clone KL-114-2-3 prokMSA_id:21658 Hymenobacter group clone KL-93-1-11 prokMSA_id:22065 Hymenobacter group clone KL-94-2-7 prokMSA_id:23697 Hymenobacter group clone KL-48-1-8 prokMSA_id:24199 Hymenobacter group clone KL-27-1-4 prokMSA_id:24408 Hymenobacter group clone KL-125-4-4 prokMSA_id:26934 Hymenobacter group clone KL-114-2-2 prokMSA_id:27258 Hymenobacter group clone KL-111-2-2 prokMSA_id:28499 Hymenobacter group clone KL-114-2-5 prokMSA_id:29431 Hymenobacter group clone KL-26-2-7 prokMSA_id:29557 Hymenobacter group clone KL-27-1-8 prokMSA_id:29868 Hymenobacter group clone KL-48-1-3 prokMSA_id:36763 Hymenobacter group clone KL-2-5-1 prokMSA_id:37382 Hymenobacter group clone KL-26-2-3 AF408312 prokMSA_id:37430 Hymenobacter group clone KL-26-2-14 prokMSA_id:38961 Hymenobacter group clone KL-26-2-15 prokMSA_id:39156 Hymenobacter group clone KL-59-7-4 prokMSA_id:39638 Hymenobacter group clone KL-94-2-11 prokMSA_id:39913 Hymenobacter group clone KL-94-2-4 prokMSA_id:39988 Hymenobacter group clone KL-94-1-4 prokMSA_id:40455 Hymenobacter group clone KL-125-4-11 prokMSA_id:42218 Hymenobacter group clone KL-36-1-7 prokMSA_id:42810 Hymenobacter group clone KL-53-2-5 prokMSA_id:42815 Hymenobacter group clone KL-111-2-9 prokMSA_id:45352 Hymenobacter group clone KL-26-2-4 prokMSA_id:47580 Hymenobacter group clone KL-94-1-6 prokMSA_id:49913 Hymenobacter group clone KL-94-1-3 prokMSA_id:50263 Hymenobacter group clone KL-93-1-12 prokMSA_id:52329 Hymenobacter group clone KL-27-1-9 prokMSA_id:52380 Hymenobacter group clone KL-59-7-9 prokMSA_id:71125 Hymenobacter group clone KL-125-4-2 2.15.6.5902 OTU 5 seqs prokMSA_id:23691 Hymenobacter group clone KL-94-1-15 prokMSA_id:36577 Taxeobacter sp. clone KL-59-7-7 prokMSA_id:39725 Hymenobacter group clone KL-27-1-12 prokMSA_id:41203 Hymenobacter group clone KL-59-7-8 prokMSA_id:46108 Taxeobacter sp. clone KL-2-4-3 2.15.6.5911 OTU 1 seq prokMSA_id:2587 clone QSSC8L-18 2.15.6.5910 OTU 1 seq prokMSA_id:2586 str. QSSC1-11 2.15.6.5912 OTU 1 seq prokMSA_id:2588 Cytophaga sp. str. BD1-27 2.15.6.5936 OTU 1 seq prokMSA_id:2592 Flectobacillus sp. str. MWH38 2.15.6.5937 OTU 1 seq prokMSA_id:2593 clone PLY51 2.15.6.5938 OTU 1 seq prokMSA_id:2595 str. NS114 2.15.6.5939 OTU 1 seq prokMSA_id:2596 Runella NS12 str. NS12 2.15.6.5944 OTU 1 seq prokMSA_id:60399 Flexibacter group LA48 2.15.6.5959 OTU 3 seqs prokMSA_id:82819 Spirosoma navajo strain HDK666 prokMSA_id:84249 Spirosoma navajo strain HDK660 prokMSA_id:85754 Spirosoma navajo strain HDK663 2.15.6.5962 OTU 1 seq prokMSA_id:50855 Rhizosphere soil clone RSC-II-76 2.15.6.5965 OTU 1 seq prokMSA_id:33872 Endosymbiont of Acanthamoeba sp. Hungarian isolate 2.15.6.5978 OTU 1 seq prokMSA_id:38021 CFB group MERTZ_0CM_57 2.15.6.5984 OTU 1 seq prokMSA_id:29921 CFB group clone TAF-A28 2.15.6.5994 OTU 4 seqs prokMSA_id:41126 Taxeobacter sp. clone KL-2-5-12 prokMSA_id:70352 Hymenobacter group clone KL-93-1-10 prokMSA_id:82222 Hymenobacter sp. NS/50 strain NS/50 prokMSA_id:83153 Antarctic R-7572 strain R-7572 2.15.6.6019 OTU 1 seq prokMSA_id:85985 Flexibacteraceae IMSNU 14013 2.15.6.6048 OTU 1 seq prokMSA_id:52858 CFB group clone TAF-A130 2.15.6.6054 OTU 1 seq prokMSA_id:49920 PHOS-HE21 2.15.6.6057 OTU 1 seq prokMSA_id:79737 clone Bol18 2.15.6.6056 OTU 1 seq prokMSA_id:32162 CFB group clone TAF-B75 2.15.6.6059 OTU 1 seq prokMSA_id:20151 GKS2-216 2.15.6.6087 OTU 1 seq prokMSA_id:59894 Bacteroidetes clone ccspost2184 2.15.6.6102 OTU 1 seq prokMSA_id:48679 CFB group clone TAF-B81 2.15.6.6124 OTU 1 seq prokMSA_id:58634 Flexibacter flexilis subsp. pelliculosus strain:IFO 16028 2.15.6.6159 OTU 1 seq prokMSA_id:82949 Flexibacteraceae IMSNU 14014 2.15.6.6172 OTU 1 seq prokMSA_id:18147 CFB group MERTZ_21CM_141 2.15.6.6184 OTU 1 seq prokMSA_id:32392 CFB group clone TAF-B84 2.15.6.6192 OTU 1 seq prokMSA_id:20428 clone BIhii45 2.15.6.6194 OTU 1 seq prokMSA_id:24593 CFB group ikaite c9 isolate ikaite c9 2.15.6.6217 OTU 1 seq prokMSA_id:36224 Hymenobacter group clone KL-53-2-6 2.15.6.6218 OTU 1 seq prokMSA_id:19106 Microscilla sp. Nano 1 complete 2.15.6.6219 OTU 1 seq prokMSA_id:40101 CFB group clone SM1G04 2.15.6.6224 OTU 1 seq prokMSA_id:18161 CFB group MERTZ_2CM_107 2.15.6.6230 OTU 20 seqs prokMSA_id:2585 unnamed organism prokMSA_id:27784 Encarsia pergandiella asexual line endosymbiont prokMSA_id:38123 Brevipalpus phoenicis endosymbiont prokMSA_id:82482 Endosymbiont of Encarsia sp. 3 AY285777 prokMSA_id:82648 Endosymbiont of Oppiella nova prokMSA_id:82769 Endosymbiont of Brevipalpus obovatus prokMSA_id:82774 Endosymbiont of Brevipalpus phoenicis AY279412 prokMSA_id:82984 Endosymbiont of Balaustium sp prokMSA_id:83033 Endosymbiont of Aphytis sp. 3 prokMSA_id:83219 Endosymbiont of Encarsia sp. 2 AY279406 prokMSA_id:83469 Endosymbiont of Aspidiotus nerii prokMSA_id:83840 Endosymbiont of Aphytis lingnanensis prokMSA_id:83888 Endosymbiont of Dicranotropis hamata prokMSA_id:84888 Endosymbiont of Aphytis sp. 4 prokMSA_id:84920 Endosymbiont of Petrobia harti AY279410 prokMSA_id:85539 Endosymbiont of Encarsiella noyesi AY279408 prokMSA_id:85710 Endosymbiont of Bemisia tabaci biotype A prokMSA_id:86289 Endosymbiont of Encarsia lutea AY279407 prokMSA_id:92039 Endosymbiont of Brevipalpus lewisi AB116515 prokMSA_id:93122 Endosymbiont of Brevipalpus californicus AB116514 2.15.6.6255 OTU 1 seq prokMSA_id:53218 GKS2-70 2.15.6.6261 OTU 5 seqs prokMSA_id:79655 clone ARKCRY-50 prokMSA_id:80153 clone ARKCRY-118 prokMSA_id:80290 clone ARKMP-14 prokMSA_id:80558 clone ARKCRY-39 prokMSA_id:81016 clone ARKCRY2 2.15.6.6276 OTU 1 seq prokMSA_id:43316 Hymenobacter group clone KL-27-1-11 2.15.6.6297 OTU 1 seq prokMSA_id:59352 clone HP1A92 2.15.6.6298 OTU 1 seq prokMSA_id:33001 CFB group clone SM1C04 2.15.6.6304 OTU 1 seq prokMSA_id:69788 Agricultural soil clone SC-I-6 2.15.6.6305 OTU 1 seq prokMSA_id:39931 ORGANIC-8 2.15.6.6315 OTU 1 seq prokMSA_id:45068 Potato plant root clone RC-III-57 2.15.6.6319 OTU 4 seqs prokMSA_id:58635 Flexibacter flexilis strain:IFO 16027 prokMSA_id:58636 Flexibacter flexilis strain:IFO 16026 prokMSA_id:58637 Flexibacter flexilis strain:IFO 16025 prokMSA_id:58638 Flexibacter flexilis strain:IFO 15060 2.15.7 FLX.LITORALIS_GROUP 1 seq 2.15.7.5366 OTU 1 seq prokMSA_id:58627 Flexibacter roseolus strain:IFO 16030 2.15.8 TMN.LAPSUM_GROUP 7 seqs 2.15.8.5770 OTU 2 seqs prokMSA_id:2631 clone OPB73 prokMSA_id:2632 clone env.OPS 17 2.15.8.5826 OTU 1 seq prokMSA_id:2627 unnamed organism 2.15.8.5824 OTU 1 seq prokMSA_id:2626 Thermonema lapsum ATCC 43542 2.15.8.5895 OTU 3 seqs prokMSA_id:2628 Thermonema rossianum str. NR-27T prokMSA_id:2629 Thermonema rossianum str. SC-1 prokMSA_id:2630 Thermonema rossianum str. AG3-1 2.15.11 RHODOTHERMUS_GROUP 35 seqs 2.15.11.5270 OTU 5 seqs prokMSA_id:29905 Rhodothermus marinus strain PRQ-55 prokMSA_id:35404 Rhodothermus marinus strain DSM 4253 prokMSA_id:37111 Rhodothermus marinus strain NR-29 prokMSA_id:43102 Rhodothermus obamensis strain JCM 9785T prokMSA_id:74734 Rhodothermus marinus strain DSM 4252T 2.15.11.5271 OTU 1 seq prokMSA_id:2650 Cytophaga sp. str. BD7-14 2.15.11.5287 OTU 1 seq prokMSA_id:26494 from anoxic bulk soil clone BSV40 2.15.11.5420 OTU 2 seqs prokMSA_id:2644 clone EHB-5. AJ242997 prokMSA_id:2645 clone EHB-2 2.15.11.5543 OTU 1 seq prokMSA_id:60618 clone Y30 2.15.11.5647 OTU 4 seqs prokMSA_id:33596 sponge symbiont RSWS18 prokMSA_id:45159 sponge symbiont RSWS16 prokMSA_id:60166 clone TK44 prokMSA_id:96738 Rhodothermus marinus isolate ISR03 Y14143 2.15.11.5774 OTU 1 seq prokMSA_id:30398 CFB group kpj57rc 2.15.11.5790 OTU 7 seqs prokMSA_id:2642 clone EHB prokMSA_id:2646 clone EHB-3 prokMSA_id:27936 Salinibacter ruber strain M8 AF323501 prokMSA_id:28419 Salinibacter ruber strain M31 prokMSA_id:37202 Salinibacter ruber strain POLA 18 prokMSA_id:43485 Salinibacter ruber strain POLA 13 prokMSA_id:51274 Salinibacter ruber strain M1 2.15.11.5822 OTU 1 seq prokMSA_id:79504 sequences clone: IheB3-7 2.15.11.5863 OTU 1 seq prokMSA_id:2635 Rhodothermus obamensis str. OKD7 2.15.11.5868 OTU 1 seq prokMSA_id:2638 VC2.1 Bac16 complete 2.15.11.5871 OTU 1 seq prokMSA_id:2639 clone LB3-13 2.15.11.5875 OTU 1 seq prokMSA_id:38912 Rhodothermus marinus strain PRQ-34 2.15.11.5898 OTU 1 seq prokMSA_id:2647 clone env.OPS 2 2.15.11.5899 OTU 1 seq prokMSA_id:2649 Cytophaga sp. str. BD2-15 2.15.11.5923 OTU 1 seq prokMSA_id:43898 green sulfur MERTZ_21CM_53 2.15.11.5975 OTU 2 seqs prokMSA_id:37226 green sulfur MERTZ_21CM_281 prokMSA_id:52416 green sulfur MERTZ_2CM_69 2.15.11.6115 OTU 1 seq prokMSA_id:26060 CFB group MERTZ_0CM_89 2.15.11.691 OTU 2 seqs prokMSA_id:2636 Rhodothermus marinus prokMSA_id:2637 Rhodothermus marinus 2.15.12 ENVIRONMENTAL_CLONE_OPB56_GROUP 10 seqs 2.15.12.5272 OTU 1 seq prokMSA_id:2651 clone OPB56 2.15.12.5273 OTU 1 seq prokMSA_id:2652 clone WCHA1-94 2.15.12.5294 OTU 2 seqs prokMSA_id:36507 GR-296.II.11 clone GR-296.II.11 prokMSA_id:83562 clone CCM9b 2.15.12.5753 OTU 2 seqs prokMSA_id:2654 clone OPS77 prokMSA_id:46550 green sulfur clone SM1H02 2.15.12.5928 OTU 1 seq prokMSA_id:57444 CFB group clone P. palm A 12 2.15.12.6053 OTU 1 seq prokMSA_id:66901 clone SHA-83 2.15.12.6131 OTU 1 seq prokMSA_id:49950 CFB/Green sulfur group clone 2.15.12.6146 OTU 1 seq prokMSA_id:25315 sludge A12b 2.16 GREEN_SULFUR_BACTERIA 43 seqs 2.16.1 ENVIRONMENTAL_CLONE_WCHB1-02_GROUP 7 seqs 2.16.1.1007 OTU 1 seq prokMSA_id:2657 clone WCHB1-02 2.16.1.1056 OTU 1 seq prokMSA_id:2660 clone WCHB1-03 2.16.1.461 OTU 5 seqs prokMSA_id:2659 clone OPS107 prokMSA_id:2661 clone OPB60 prokMSA_id:2663 clone OPS148 prokMSA_id:2664 clone OPS163 prokMSA_id:36070 SRI-280 2.16.3 CHLOROBIUM_GROUP 36 seqs 2.16.3.1020 OTU 3 seqs prokMSA_id:2678 clone PENDANT-21. AF142933 prokMSA_id:2679 clone PENDANT-20 prokMSA_id:52206 green sulfur MERTZ_2CM_278 2.16.3.1039 OTU 2 seqs prokMSA_id:2692 Chlorobium limicola str. 6230 prokMSA_id:63746 Chlorobium limicola f. thiosulfatophilum strain 1430 2.16.3.262 OTU 11 seqs prokMSA_id:2670 Pelodictyon phaeoclathratiforme str. BU-1 prokMSA_id:2675 Prosthecochloris aestuarii str. SK 413 DSM 271 prokMSA_id:2676 Chlorobium limicola str. 8327 prokMSA_id:2681 Chlorobium vibrioforme str. UdG 6026. Y10649 prokMSA_id:2687 Chlorobium limicola str. UdG 6040. Y10642 prokMSA_id:2694 Chlorobium vibrioforme str. 6132. Y08103 prokMSA_id:2695 Pelodictyon luteolum str. 2530. Y08107 prokMSA_id:18641 Chlorobium ferrooxidans prokMSA_id:64302 Chlorobium tepidum TLS section 14 of 194 of the complete gen prokMSA_id:71554 Chlorobium vibrioforme f. thiosulfatophilum strain NCIB 8346 prokMSA_id:91506 clone K2-4-2 AY344404 2.16.3.295 OTU 1 seq prokMSA_id:2677 clone SJA-28 2.16.3.341 OTU 1 seq prokMSA_id:51942 clone SM1H06 2.16.3.344 OTU 1 seq prokMSA_id:62569 isolate P2CN14 2.16.3.503 OTU 1 seq prokMSA_id:2680 Chloroherpeton thalassium 2.16.3.549 OTU 1 seq prokMSA_id:60815 Chlorobi clone Cart-N2 2.16.3.636 OTU 1 seq prokMSA_id:60814 Chlorobi clone Cart-N3 2.16.3.755 OTU 5 seqs prokMSA_id:19434 green sulfur clone SM1B03 prokMSA_id:28620 green sulfur clone SM1B02 prokMSA_id:34775 green sulfur clone SM1C05 prokMSA_id:39737 green sulfur clone SM2F10 prokMSA_id:48102 green sulfur clone SM1B01 2.16.3.859 OTU 7 seqs prokMSA_id:2673 Chlorobium phaeovibrioides str. 2631 prokMSA_id:63878 Chlorobium vibrioforme f. thiosulfatophilum strain DSM 265 prokMSA_id:63917 Chlorobium phaeovibrioides strain DSM 270 prokMSA_id:63925 Chlorobium vibrioforme strain DSM 261 prokMSA_id:73247 Chlorobium limicola strain DSM246 prokMSA_id:73772 Chlorobium limicola f. thiosulfatophilum strain 1630 prokMSA_id:74116 Chlorobium limicola f. thiosulfatophilum strain 9330 AJ29082 2.16.3.906 OTU 1 seq prokMSA_id:63922 Chlorobium phaeobacteroides strain DSM 1677 2.16.3.995 OTU 1 seq prokMSA_id:69274 Chlorobium limicola strain:M1 2.18 ENVIRONMENTAL_CLONE_WCHB1-31_GROUP 102 seqs 2.18.101 OTU 1 seq prokMSA_id:26613 Anaerobic filamentous STL-6-O1 2.18.1054 OTU 1 seq prokMSA_id:25243 green nonsulfur clone SM1F10 2.18.106 OTU 1 seq prokMSA_id:66907 clone SHD-231 2.18.1071 OTU 2 seqs prokMSA_id:63984 clone 131 prokMSA_id:64880 clone 31 2.18.1078 OTU 1 seq prokMSA_id:70228 a2b046 2.18.121 OTU 1 seq prokMSA_id:45285 AB13 2.18.158 OTU 1 seq prokMSA_id:65477 SHD-43 2.18.159 OTU 1 seq prokMSA_id:65479 SHD-235 2.18.162 OTU 2 seqs prokMSA_id:2744 clone SJA-58 prokMSA_id:84512 Anaerobic filamentous KIBI-1 2.18.166 OTU 1 seq prokMSA_id:69761 C1_B004 2.18.170 OTU 1 seq prokMSA_id:71617 clone SBR2037 2.18.172 OTU 1 seq prokMSA_id:73779 Chloroflexaceae group clone P2-G12 2.18.174 OTU 1 seq prokMSA_id:44630 Anaerobic filamentous UNI-1 2.18.175 OTU 1 seq prokMSA_id:71882 C1_B046 2.18.188 OTU 1 seq prokMSA_id:19494 clone GIF1 2.18.2 OTU 1 seq prokMSA_id:38904 AA25 2.18.205 OTU 1 seq prokMSA_id:76756 clone JG34-KF-221 2.18.225 OTU 1 seq prokMSA_id:34880 Toluene-degrading methanogenic consortium Eub 6 2.18.239 OTU 2 seqs prokMSA_id:66909 clone SHD-190 prokMSA_id:66946 clone SHA-27 2.18.25 OTU 1 seq prokMSA_id:72208 C1_B034 2.18.258 OTU 7 seqs prokMSA_id:2740 clone WCHB1-05 prokMSA_id:2745 clone SJA-108 prokMSA_id:65476 SHD-299 AJ278173 prokMSA_id:66910 clone SHD-100 AJ306794 prokMSA_id:66911 clone SHD-14 prokMSA_id:77298 K-4b6 prokMSA_id:77570 K-5b9 2.18.266 OTU 2 seqs prokMSA_id:80378 Chloroflexi clone O1aA21 prokMSA_id:80786 Chloroflexi clone O1aA19 2.18.276 OTU 1 seq prokMSA_id:21437 SHA-105 2.18.286 OTU 1 seq prokMSA_id:51584 Thermal soil YNP1 2.18.355 OTU 1 seq prokMSA_id:81161 clone ZZ14AC19 2.18.356 OTU 1 seq prokMSA_id:2752 clone H1.43.f 2.18.358 OTU 1 seq prokMSA_id:2756 clone RB03 2.18.374 OTU 1 seq prokMSA_id:65692 soil clone S041 2.18.375 OTU 1 seq prokMSA_id:65693 soil clone C043 2.18.376 OTU 1 seq prokMSA_id:2707 clone WCHB1-63 2.18.382 OTU 1 seq prokMSA_id:38560 a1b002 2.18.390 OTU 1 seq prokMSA_id:33506 green nonsulfur MERTZ_2CM_217 2.18.402 OTU 1 seq prokMSA_id:72140 a1b007 2.18.411 OTU 1 seq prokMSA_id:32511 UASB_TL14 complete 2.18.413 OTU 1 seq prokMSA_id:2711 clone PENDANT-36 2.18.416 OTU 3 seqs prokMSA_id:2709 clone OPB12. AF027031 prokMSA_id:2712 clone OPB11. AF027032 prokMSA_id:2715 clone OPS124 2.18.43 OTU 6 seqs prokMSA_id:24750 Chloroflexaceae group clone DGGE band P6.2 prokMSA_id:25099 Chloroflexaceae group clone P2-C09 prokMSA_id:38613 Chloroflexaceae group clone P2-F12 prokMSA_id:52373 Chloroflexaceae group clone P5-F05 AJ309634 prokMSA_id:70638 Chloroflexaceae group clone P6-B01 prokMSA_id:73176 Chloroflexaceae group clone DGGE band P6.1 2.18.470 OTU 3 seqs prokMSA_id:2750 clone WCHB1-50 prokMSA_id:2751 clone SJA-35 prokMSA_id:63208 clone FW24 2.18.473 OTU 1 seq prokMSA_id:17692 Banisveld landfill BVB11 2.18.487 OTU 1 seq prokMSA_id:85265 Anaerobic filamentous IMO-1 2.18.490 OTU 1 seq prokMSA_id:83666 Anaerobic filamentous YMTK-2 2.18.494 OTU 1 seq prokMSA_id:30996 green nonsulfur MERTZ_2CM_197 2.18.509 OTU 1 seq prokMSA_id:23789 clone BH4-63 2.18.566 OTU 2 seqs prokMSA_id:2710 clone SJA-101 prokMSA_id:38185 Eub No. 13 2.18.57 OTU 1 seq prokMSA_id:31908 SHA-300 2.18.576 OTU 1 seq prokMSA_id:55534 clone SHA-36 2.18.583 OTU 1 seq prokMSA_id:65478 SHD-238 2.18.606 OTU 1 seq prokMSA_id:71233 a2b029 2.18.651 OTU 1 seq prokMSA_id:66905 clone SHD-262 2.18.683 OTU 1 seq prokMSA_id:2741 clone WCHB1-80 2.18.689 OTU 2 seqs prokMSA_id:2743 clone WCHA1-69. AF050567 prokMSA_id:73947 Chloroflexi clone 44a-B1-15 2.18.72 OTU 1 seq prokMSA_id:83926 clone CCD21 2.18.727 OTU 1 seq prokMSA_id:71875 soil clone S0208 2.18.730 OTU 1 seq prokMSA_id:67028 clone SHD-249 2.18.757 OTU 1 seq prokMSA_id:67038 clone SHA-8 2.18.76 OTU 1 seq prokMSA_id:66944 clone SHA-147 2.18.766 OTU 5 seqs prokMSA_id:2728 clone WCHB1-43 prokMSA_id:2742 clone WCHB1-44 prokMSA_id:20651 SHA-56 prokMSA_id:47263 SHA-24 prokMSA_id:56469 SHD-245 2.18.789 OTU 1 seq prokMSA_id:30131 clone SM1D10 2.18.836 OTU 1 seq prokMSA_id:2721 clone RB41 2.18.838 OTU 1 seq prokMSA_id:2722 clone WCHB1-62 2.18.843 OTU 1 seq prokMSA_id:2724 clone SJA-170 2.18.846 OTU 1 seq prokMSA_id:2725 clone SB-34 2.18.849 OTU 1 seq prokMSA_id:2727 clone LB3-100 2.18.850 OTU 1 seq prokMSA_id:42071 C1-28 clone C1-28 2.18.86 OTU 1 seq prokMSA_id:45276 TA17 2.18.869 OTU 1 seq prokMSA_id:2729 clone SJA-116 2.18.895 OTU 2 seqs prokMSA_id:84241 clone CARB_ESS_12 prokMSA_id:85574 clone CARB_ESS_5 2.18.90 OTU 1 seq prokMSA_id:66945 clone SHA-135 2.18.910 OTU 1 seq prokMSA_id:2736 clone WCHB1-31 2.18.913 OTU 1 seq prokMSA_id:62549 isolate P2CN39 2.18.933 OTU 1 seq prokMSA_id:41206 green nonsulfur MERTZ_21CM_156 2.18.94 OTU 1 seq prokMSA_id:66949 clone SHA-2 2.18.946 OTU 1 seq prokMSA_id:81557 clone KM87 2.18.952 OTU 1 seq prokMSA_id:22061 sludge H5 2.18.977 OTU 1 seq prokMSA_id:23814 green nonsulfur MERTZ_2CM_137 2.18.989 OTU 1 seq prokMSA_id:2748 clone WCHA1-79 2.20 PLANCTOMYCES_AND_RELATIVES 386 seqs 2.20.1 PIRELLULA_GROUP 156 seqs 2.20.1.1 PIRELLULA_SCHLESNER_ISOLATES 84 seqs 2.20.1.1.4660 OTU 1 seq prokMSA_id:46836 planctomycete MERTZ_2CM_307 2.20.1.1.4670 OTU 2 seqs prokMSA_id:85976 planctomycete clone CY0ARA055B12 of environmental sample of prokMSA_id:86334 planctomycete clone CY0ARA029G09 of environmental sample of 2.20.1.1.4677 OTU 5 seqs prokMSA_id:82851 planctomycete clone CY0ARA055C03 of environmental sample of prokMSA_id:83873 planctomycete clone CY0ARA026H07 of environmental sample of prokMSA_id:85229 planctomycete clone CY0ARA027D11 of environmental sample of prokMSA_id:85571 planctomycete clone CY0ARA032A03 of environmental sample of prokMSA_id:86238 planctomycete clone CY0ARA025H03 of environmental sample of 2.20.1.1.4683 OTU 2 seqs prokMSA_id:83520 planctomycete clone CY0ARA025F10 of environmental sample of prokMSA_id:86383 planctomycete clone CY0ARA028B09 of environmental sample of 2.20.1.1.4689 OTU 2 seqs prokMSA_id:2771 Pirellula sp. str. Schlesner 1 prokMSA_id:2776 str. 608 2.20.1.1.4692 OTU 4 seqs prokMSA_id:82939 planctomycete clone CY0ARA026F01 of environmental sample of prokMSA_id:84399 planctomycete clone CY0ARA031A01 of environmental sample of prokMSA_id:84674 planctomycete clone CY0ARA031D06 of environmental sample of prokMSA_id:86221 planctomycete clone CY0ARA026G04 of environmental sample of 2.20.1.1.4694 OTU 1 seq prokMSA_id:40888 clone HT2F11 2.20.1.1.4701 OTU 1 seq prokMSA_id:48536 soil PBS-40 2.20.1.1.4704 OTU 2 seqs prokMSA_id:82914 planctomycete clone CY0ARA025E11 of environmental sample of prokMSA_id:84402 planctomycete clone CY0ARA032H05 of environmental sample of 2.20.1.1.4713 OTU 1 seq prokMSA_id:40268 planctomycete isolate ikaite un-c21 2.20.1.1.4716 OTU 1 seq prokMSA_id:34936 planctomycete MERTZ_2CM_236 2.20.1.1.4724 OTU 1 seq prokMSA_id:35748 planctomycete clone DSP48 2.20.1.1.4720 OTU 1 seq prokMSA_id:84073 planctomycete clone CY0ARA032G08 of environmental sample of 2.20.1.1.4722 OTU 1 seq prokMSA_id:20894 planctomycete clone DSP26 2.20.1.1.4729 OTU 1 seq prokMSA_id:52599 planctomycete clone DSP18 2.20.1.1.4738 OTU 1 seq prokMSA_id:44654 soil PBS-33 2.20.1.1.4735 OTU 1 seq prokMSA_id:85995 planctomycete clone CY0ARA025E05 of environmental sample of 2.20.1.1.4748 OTU 1 seq prokMSA_id:2767 Pirellula sp. str. Schlesner 140 2.20.1.1.4753 OTU 1 seq prokMSA_id:80219 clone ARKCH2Br2-73 2.20.1.1.4761 OTU 1 seq prokMSA_id:22815 planctomycete Sva0800 2.20.1.1.4762 OTU 1 seq prokMSA_id:31565 clone KS32 2.20.1.1.4767 OTU 1 seq prokMSA_id:2770 Pirellula sp. str. Schlesner 384 2.20.1.1.4772 OTU 1 seq prokMSA_id:2772 clone HstpL75 2.20.1.1.4770 OTU 1 seq prokMSA_id:33379 planctomycete clone49 2.20.1.1.4769 OTU 1 seq prokMSA_id:71342 planctomycete clone LD1-PA40 2.20.1.1.4775 OTU 1 seq prokMSA_id:2777 str. 529 2.20.1.1.4778 OTU 1 seq prokMSA_id:2778 str. 610 2.20.1.1.4792 OTU 1 seq prokMSA_id:2780 Pirellula Pirellula clone 6N14 2.20.1.1.4797 OTU 1 seq prokMSA_id:2784 str. 337 2.20.1.1.4802 OTU 3 seqs prokMSA_id:84128 planctomycete clone CY0ARA026G09 of environmental sample of prokMSA_id:85856 planctomycete clone CY0ARA025H08 of environmental sample of prokMSA_id:86524 planctomycete clone CY0ARA031H01 of environmental sample of 2.20.1.1.4799 OTU 1 seq prokMSA_id:2785 str. 567 2.20.1.1.4801 OTU 2 seqs prokMSA_id:83238 planctomycete clone CY0ARA030F07 of environmental sample of prokMSA_id:83410 planctomycete clone CY0ARA025B08 of environmental sample of 2.20.1.1.4807 OTU 1 seq prokMSA_id:2787 Pirellula sp. str. Schlesner 158 2.20.1.1.4814 OTU 2 seqs prokMSA_id:2783 Pirellula sp. str. Schlesner 516 prokMSA_id:2786 str. 543 2.20.1.1.4813 OTU 1 seq prokMSA_id:86095 planctomycete clone CY0ARA027H11 of environmental sample of 2.20.1.1.4815 OTU 7 seqs prokMSA_id:33918 planctomycete clone DSP12 AJ290173 prokMSA_id:41687 planctomycete clone DSP19 AJ290174 prokMSA_id:43981 planctomycete clone DSP23 prokMSA_id:45321 planctomycete clone DSP17 prokMSA_id:54575 planctomycete clone DSP04 AJ290170 prokMSA_id:71284 planctomycete clone DSP41 prokMSA_id:91141 clone W4A-A33 AY345510 2.20.1.1.4835 OTU 2 seqs prokMSA_id:42704 clone Tc94 prokMSA_id:49237 clone Tc74 2.20.1.1.4837 OTU 2 seqs prokMSA_id:18879 planctomycete clone30 prokMSA_id:85732 clone CCM5b 2.20.1.1.4847 OTU 1 seq prokMSA_id:18704 planctomycete clone DSP25 2.20.1.1.4848 OTU 1 seq prokMSA_id:18708 planctomycete MERTZ_2CM_25 2.20.1.1.4851 OTU 1 seq prokMSA_id:17699 planctomycete MERTZ_21CM_189 2.20.1.1.4863 OTU 1 seq prokMSA_id:33252 planctomycete clone DSP36 2.20.1.1.4861 OTU 1 seq prokMSA_id:26033 planctomycete MERTZ_21CM_35 2.20.1.1.4867 OTU 1 seq prokMSA_id:52475 planctomycete clone46 2.20.1.1.4869 OTU 1 seq prokMSA_id:23198 soil PBS-81 2.20.1.1.4880 OTU 1 seq prokMSA_id:17937 clone KS31 2.20.1.1.4885 OTU 1 seq prokMSA_id:2805 str. 449 2.20.1.1.4883 OTU 1 seq prokMSA_id:2800 Pirellula sp. str. Schlesner 382 2.20.1.1.4884 OTU 1 seq prokMSA_id:2801 Pirellula sp. str. Schlesner 302 2.20.1.1.4889 OTU 1 seq prokMSA_id:25864 planctomycete clone DSP08 2.20.1.1.4890 OTU 1 seq prokMSA_id:84815 planctomycete clone CY0ARA027A06 of environmental sample of 2.20.1.1.4891 OTU 1 seq prokMSA_id:29003 planctomycete clone DSP56 2.20.1.1.4904 OTU 1 seq prokMSA_id:19319 planctomycete MERTZ_2CM_313 2.20.1.1.4905 OTU 1 seq prokMSA_id:40976 planctomycete MERTZ_2CM_10 2.20.1.1.4911 OTU 1 seq prokMSA_id:2793 Pirellula sp. str. Schlesner 139 2.20.1.1.4918 OTU 1 seq prokMSA_id:2797 clone ACE-29 2.20.1.1.4919 OTU 2 seqs prokMSA_id:2798 clone OPB17. AF027057 prokMSA_id:2799 clone OPB6 2.20.1.1.4916 OTU 1 seq prokMSA_id:2794 clone vadinBA30 2.20.1.1.4931 OTU 1 seq prokMSA_id:66934 clone SHA-6 2.20.1.1.4956 OTU 1 seq prokMSA_id:37686 PHOS-HE25 2.20.1.2 PIR.STALEYI_SUBGROUP 67 seqs 2.20.1.2.4654 OTU 2 seqs prokMSA_id:2824 clone HstpL83 prokMSA_id:16674 clone 33-FL67B99 2.20.1.2.4659 OTU 1 seq prokMSA_id:46904 soil PBS-II-13 2.20.1.2.4687 OTU 2 seqs prokMSA_id:35477 planctomycete clone41 prokMSA_id:52010 planctomycete clone47 2.20.1.2.4691 OTU 9 seqs prokMSA_id:24219 Metal-contaminated soil clone K20-02 prokMSA_id:26957 planctomycete clone23 prokMSA_id:27858 Metal-contaminated soil clone K20-38 prokMSA_id:35556 sludge A25 AF234700 prokMSA_id:84577 planctomycete clone CY0ARA028H09 of environmental sample of prokMSA_id:85090 planctomycete clone CY0ARA026C09 of environmental sample of prokMSA_id:85948 soil clone Tc130-30 AY242736 prokMSA_id:86136 planctomycete clone CY0ARA056C02 of environmental sample of prokMSA_id:98499 clone B28R AY395113 2.20.1.2.4693 OTU 2 seqs prokMSA_id:16536 planctomycete MERTZ_21CM_143 prokMSA_id:59765 clone BB2_148 2.20.1.2.4709 OTU 1 seq prokMSA_id:86701 planctomycete clone CY0ARA055H09 of environmental sample of 2.20.1.2.4712 OTU 1 seq prokMSA_id:73686 Planctomycetales clone SM2F01 2.20.1.2.4718 OTU 1 seq prokMSA_id:40276 Metal-contaminated soil clone K20-31 2.20.1.2.4726 OTU 1 seq prokMSA_id:37281 clone t040 2.20.1.2.4732 OTU 1 seq prokMSA_id:36841 planctomycete clone33 2.20.1.2.4737 OTU 1 seq prokMSA_id:37436 Pirellula kpj13f 2.20.1.2.4740 OTU 1 seq prokMSA_id:82583 planctomycete clone CY0ARA031C05 of environmental sample of 2.20.1.2.4744 OTU 1 seq prokMSA_id:27673 sludge A1 2.20.1.2.4754 OTU 1 seq prokMSA_id:28765 Agricultural soil clone SC-I-28 2.20.1.2.4776 OTU 1 seq prokMSA_id:43338 planctomycete MERTZ_0CM_317 2.20.1.2.4782 OTU 1 seq prokMSA_id:51502 planctomycete MERTZ_21CM_287 2.20.1.2.4779 OTU 1 seq prokMSA_id:30167 soil PRR-47 2.20.1.2.4803 OTU 9 seqs prokMSA_id:2809 str. 611. AJ231179 prokMSA_id:2810 str. 391. AJ231180 prokMSA_id:2812 Pirellula sp. ACM 3180 prokMSA_id:2813 Pirellula sp. ACM 3181 prokMSA_id:2814 Pirellula sp. str. AGA/C41 prokMSA_id:2815 Pirellula sp. str. AGA/M12 prokMSA_id:2816 Pirellula sp. str. AGA/M41 prokMSA_id:71634 Pirellula sp. SW16 prokMSA_id:71672 Pirellula sp. Apfist 2.20.1.2.4812 OTU 2 seqs prokMSA_id:17181 planctomycete MERTZ_21CM_254 prokMSA_id:42468 planctomycete MERTZ_21CM_21 2.20.1.2.4808 OTU 1 seq prokMSA_id:35201 planctomycete clone6 2.20.1.2.4810 OTU 1 seq prokMSA_id:2818 Pirellula sp. str. Schlesner 678 2.20.1.2.4819 OTU 3 seqs prokMSA_id:2826 Pirellula staleyi ATCC 27377 prokMSA_id:2828 Pirellula staleyi DSM 6068 . AJ231183 prokMSA_id:35238 Pirellula staleyi strain ATCC 35122 2.20.1.2.4817 OTU 3 seqs prokMSA_id:38299 soil PRR-1B prokMSA_id:46511 soil PRR-7 prokMSA_id:51628 soil PRR-14 2.20.1.2.4833 OTU 2 seqs prokMSA_id:33540 Metal-contaminated soil clone K20-20 prokMSA_id:44989 planctomycete clone44 2.20.1.2.4838 OTU 1 seq prokMSA_id:32118 planctomycete clone DSP09 2.20.1.2.4844 OTU 1 seq prokMSA_id:22503 planctomycete MERTZ_21CM_411 2.20.1.2.4845 OTU 1 seq prokMSA_id:22360 MERTZ_21CM_74 2.20.1.2.4850 OTU 1 seq prokMSA_id:82832 planctomycete clone CY0ARA027C01 of environmental sample of 2.20.1.2.4853 OTU 1 seq prokMSA_id:70249 C1_B039 2.20.1.2.4860 OTU 1 seq prokMSA_id:22522 planctomycete MERTZ_21CM_26 2.20.1.2.4879 OTU 1 seq prokMSA_id:30401 planctomycete clone40 2.20.1.2.4877 OTU 1 seq prokMSA_id:50882 sludge A8 2.20.1.2.4876 OTU 1 seq prokMSA_id:32460 planctomycete clone38 2.20.1.2.4882 OTU 1 seq prokMSA_id:66932 clone SHA-87 2.20.1.2.4888 OTU 1 seq prokMSA_id:2808 Pirellula marina DSM 3645 2.20.1.2.4894 OTU 1 seq prokMSA_id:38697 clone Tc77 2.20.1.2.4903 OTU 1 seq prokMSA_id:2811 str. 116 2.20.1.2.4900 OTU 1 seq prokMSA_id:83886 planctomycete clone CY0ARA027E04 of environmental sample of 2.20.1.2.4913 OTU 1 seq prokMSA_id:83975 planctomycete clone CY0ARA031B03 of environmental sample of 2.20.1.2.4912 OTU 1 seq prokMSA_id:85578 planctomycete clone CY0ARA031F02 of environmental sample of 2.20.1.2.4927 OTU 1 seq prokMSA_id:2821 str. 292 2.20.1.2.4934 OTU 1 seq prokMSA_id:47745 soil PBS-72 2.20.1.3 ENVIRONMENTAL_CLONE_AGG8_SUBGROUP 5 seqs 2.20.1.3.4736 OTU 1 seq prokMSA_id:2830 marine snow associated clone agg8 2.20.1.3.4739 OTU 1 seq prokMSA_id:2831 clone HstpL8 2.20.1.3.4828 OTU 2 seqs prokMSA_id:2833 Pirellula Pirellula clone 5H12 prokMSA_id:2834 Pirellula Pirellula clone 6O13 2.20.1.3.4892 OTU 1 seq prokMSA_id:38280 planctomycete MERTZ_0CM_394 2.20.2 PLANCTOMYCES_GROUP 75 seqs 2.20.2.1 PLN.LIMNOPHILUS_SUBGROUP 29 seqs 2.20.2.1.4682 OTU 3 seqs prokMSA_id:26236 verrucomicrobium DEV057 clone DEV057 AJ401119 prokMSA_id:40021 verrucomicrobium DEV036 clone DEV036 prokMSA_id:46265 verrucomicrobium DEV050 clone DEV050 2.20.2.1.4727 OTU 1 seq prokMSA_id:26861 planctomycete MERTZ_2CM_85 2.20.2.1.4730 OTU 1 seq prokMSA_id:19648 planctomycete MERTZ_2CM_312 2.20.2.1.4746 OTU 1 seq prokMSA_id:2837 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.2.1.4757 OTU 1 seq prokMSA_id:2840 Planctomyces 599 str. 599 2.20.2.1.4759 OTU 1 seq prokMSA_id:36579 planctomycete clone DSP14 2.20.2.1.4765 OTU 1 seq prokMSA_id:22015 planctomycete MERTZ_0CM_311 2.20.2.1.4768 OTU 1 seq prokMSA_id:2843 clone Sva0503 2.20.2.1.4773 OTU 3 seqs prokMSA_id:2845 Planctomyces limnophilus ATCC 43296 prokMSA_id:2846 Planctomyces 287 str. 287. AJ231187 prokMSA_id:2847 Planctomyces 282 str. 282. AJ231188 2.20.2.1.4818 OTU 4 seqs prokMSA_id:84043 planctomycete clone CY0ARA027C06 of environmental sample of prokMSA_id:85255 planctomycete clone CY0ARA028G10 of environmental sample of prokMSA_id:85278 planctomycete clone CY0ARA028F09 of environmental sample of prokMSA_id:89643 DSSD34 AY328733 2.20.2.1.4821 OTU 2 seqs prokMSA_id:2838 Planctomyces sp. str. Schlesner 638 prokMSA_id:2841 Planctomyces sp. str. Schlesner 642 2.20.2.1.4858 OTU 1 seq prokMSA_id:29509 planctomycete clone DSP01 2.20.2.1.4864 OTU 1 seq prokMSA_id:45322 planctomycete MERTZ_2CM_102 2.20.2.1.4895 OTU 1 seq prokMSA_id:63101 clone MB-C2-147 2.20.2.1.4897 OTU 1 seq prokMSA_id:63103 clone MB-C2-105 2.20.2.1.4923 OTU 1 seq prokMSA_id:33421 planctomycete MERTZ_21CM_298 2.20.2.1.4920 OTU 1 seq prokMSA_id:43304 planctomycete MERTZ_21CM_155 2.20.2.1.4929 OTU 1 seq prokMSA_id:34497 planctomycete MERTZ_21CM_249 2.20.2.1.4930 OTU 1 seq prokMSA_id:66933 clone SHA-43 2.20.2.1.4950 OTU 1 seq prokMSA_id:20818 planctomycete MERTZ_2CM_77 2.20.2.1.4952 OTU 1 seq prokMSA_id:28302 planctomycete MERTZ_21CM_239 2.20.2.2 PLN.MARIS_SUBGROUP 46 seqs 2.20.2.2.4650 OTU 1 seq prokMSA_id:17529 sp. clone 1200-34 2.20.2.2.4652 OTU 5 seqs prokMSA_id:82501 planctomycete clone CY0ARA026E07 of environmental sample of prokMSA_id:84112 planctomycete clone CY0ARA028F06 of environmental sample of prokMSA_id:84152 planctomycete clone CY0ARA031G02 of environmental sample of prokMSA_id:84174 planctomycete clone CY0ARA028C04 of environmental sample of prokMSA_id:84269 planctomycete clone CY0ARA027A01 of environmental sample of 2.20.2.2.4674 OTU 1 seq prokMSA_id:85582 planctomycete clone CY0ARA028B05 of environmental sample of 2.20.2.2.4676 OTU 3 seqs prokMSA_id:84069 planctomycete clone CY0ARA026C05 of environmental sample of prokMSA_id:85037 planctomycete clone CY0ARA031E04 of environmental sample of prokMSA_id:86466 planctomycete clone CY0ARA028E09 of environmental sample of 2.20.2.2.4699 OTU 6 seqs prokMSA_id:84138 planctomycete clone CY0ARA027G11 of environmental sample of prokMSA_id:85389 planctomycete clone CY0ARA025A02 of environmental sample of prokMSA_id:85891 planctomycete clone CY0ARA027C03 of environmental sample of prokMSA_id:85984 planctomycete clone CY0ARA028B01 of environmental sample of prokMSA_id:86090 planctomycete clone CY0ARA031E07 of environmental sample of prokMSA_id:86400 planctomycete clone CY0ARA031F03 of environmental sample of 2.20.2.2.4711 OTU 1 seq prokMSA_id:66533 clone cvf113042 2.20.2.2.4734 OTU 1 seq prokMSA_id:26219 planctomycete MERTZ_21CM_203 2.20.2.2.4756 OTU 1 seq prokMSA_id:34174 mRNA clone sipK18 2.20.2.2.4764 OTU 1 seq prokMSA_id:83569 planctomycete clone CY0ARA032H11 of environmental sample of 2.20.2.2.4774 OTU 1 seq prokMSA_id:2849 Planctomyces sp. str. Schlesner 130 2.20.2.2.4783 OTU 1 seq prokMSA_id:52232 Crater Lake CL500-4 2.20.2.2.4789 OTU 1 seq prokMSA_id:2851 Planctomyces maris DSM 8797 2.20.2.2.4791 OTU 1 seq prokMSA_id:2852 Planctomyces ACE-2 2.20.2.2.4793 OTU 1 seq prokMSA_id:2853 Planctomyces Planctomyces clone 7F15 2.20.2.2.4796 OTU 1 seq prokMSA_id:2856 Planctomyces sp. str. Schlesner 668 2.20.2.2.4798 OTU 1 seq prokMSA_id:2858 clone QSSC8L-11 2.20.2.2.4806 OTU 1 seq prokMSA_id:2859 Planctomyces 248 str. 248 2.20.2.2.4816 OTU 2 seqs prokMSA_id:2862 Planctomyces sp. str. Schlesner 269 prokMSA_id:2863 Planctomyces 423 str. 423 2.20.2.2.4831 OTU 3 seqs prokMSA_id:2857 Planctomyces brasiliensis DSM 5305 prokMSA_id:2860 Planctomyces sp. str. AGA/M18 prokMSA_id:62476 planctomycete clone LA4-B40N 2.20.2.2.4855 OTU 1 seq prokMSA_id:84446 planctomycete clone CY0ARA026D10 of environmental sample of 2.20.2.2.4862 OTU 1 seq prokMSA_id:27845 planctomycete MERTZ_21CM_40 2.20.2.2.4872 OTU 1 seq prokMSA_id:39076 planctomycete MERTZ_21CM_342 2.20.2.2.4873 OTU 1 seq prokMSA_id:46917 Agricultural soil clone SC-I-11 2.20.2.2.4881 OTU 1 seq prokMSA_id:82539 planctomycete clone CY0ARA028C07 of environmental sample of 2.20.2.2.4899 OTU 1 seq prokMSA_id:2861 Planctomyces sp. str. Schlesner 664 2.20.2.2.4917 OTU 1 seq prokMSA_id:2869 clone SCALE-10 2.20.2.2.4933 OTU 1 seq prokMSA_id:2871 Planctomyces sp. str. BD1-23 2.20.2.2.4948 OTU 5 seqs prokMSA_id:83300 planctomycete clone CY0ARA032C05 of environmental sample of prokMSA_id:83373 planctomycete clone CY0ARA027D12 of environmental sample of prokMSA_id:84911 planctomycete clone CY0ARA027D01 of environmental sample of prokMSA_id:85009 planctomycete clone CY0ARA031F05 of environmental sample of prokMSA_id:85309 planctomycete clone CY0ARA026D07 of environmental sample of 2.20.3 ISOSPHAERA_GROUP 55 seqs 2.20.3.1 ISO.PALLIDA_SUBGROUP 22 seqs 2.20.3.1.4695 OTU 2 seqs prokMSA_id:30187 Crater Lake CL500-100 prokMSA_id:37264 Crater Lake CL500-15 AF316773 2.20.3.1.4710 OTU 1 seq prokMSA_id:30562 planctomycete MERTZ_21CM_399 2.20.3.1.4749 OTU 1 seq prokMSA_id:63228 clone FW26 2.20.3.1.4750 OTU 1 seq prokMSA_id:20269 Nostocoida limicola III strain Ben220 2.20.3.1.4780 OTU 1 seq prokMSA_id:43216 GT43a 2.20.3.1.4824 OTU 2 seqs prokMSA_id:2881 str. 563 prokMSA_id:31175 Isosphaera-like str. CJuql1 2.20.3.1.4829 OTU 2 seqs prokMSA_id:16557 Nostocoida limicola III strain Ben222 prokMSA_id:51778 Nostocoida limicola III strain Ben225 2.20.3.1.4846 OTU 1 seq prokMSA_id:53180 Nostocoida limicola III strain Ben223 2.20.3.1.4856 OTU 1 seq prokMSA_id:45617 Isosphaera-like str. C2-3 2.20.3.1.4868 OTU 1 seq prokMSA_id:24367 WD287 clone WD287 2.20.3.1.4874 OTU 1 seq prokMSA_id:46130 sludge A19 2.20.3.1.4902 OTU 1 seq prokMSA_id:27191 2112 clone 2112 2.20.3.1.4928 OTU 1 seq prokMSA_id:33768 Nostocoida limicola III strain Ben224 2.20.3.1.4942 OTU 1 seq prokMSA_id:2877 Isosphaera sp. str. Schlesner 640 2.20.3.1.4943 OTU 1 seq prokMSA_id:2878 str. 394 2.20.3.1.4940 OTU 1 seq prokMSA_id:2875 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.1.4944 OTU 1 seq prokMSA_id:2879 Isosphaera sp. str. Schlesner 666 2.20.3.1.4958 OTU 1 seq prokMSA_id:2885 Isosphaera sp. str. Schlesner 657 2.20.3.1.4957 OTU 1 seq prokMSA_id:2884 Isosphaera pallida DSM 9630 2.20.3.2 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_I 15 seqs 2.20.3.2.4649 OTU 1 seq prokMSA_id:36970 planctomycete clone35 2.20.3.2.4655 OTU 2 seqs prokMSA_id:17601 planctomycete clone27 prokMSA_id:19485 planctomycete clone14 2.20.3.2.4651 OTU 1 seq prokMSA_id:42389 sludge A12 2.20.3.2.4661 OTU 1 seq prokMSA_id:16827 planctomycete clone11 2.20.3.2.4714 OTU 1 seq prokMSA_id:27713 planctomycete clone7 2.20.3.2.4785 OTU 1 seq prokMSA_id:29777 planctomycete clone28 2.20.3.2.4852 OTU 1 seq prokMSA_id:22379 thermal soil clone YNPFFP32 2.20.3.2.4859 OTU 1 seq prokMSA_id:31715 planctomycete clone9 2.20.3.2.4866 OTU 1 seq prokMSA_id:17920 planctomycete YNPRH54A 2.20.3.2.4871 OTU 1 seq prokMSA_id:44900 planctomycete clone18 2.20.3.2.4932 OTU 1 seq prokMSA_id:41568 planctomycete clone22 2.20.3.2.4945 OTU 1 seq prokMSA_id:46659 planctomycete clone32 2.20.3.2.4959 OTU 1 seq prokMSA_id:2887 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.2.4961 OTU 1 seq prokMSA_id:2889 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.3 GMT.OBSCURIGLOBUS_SUBGROUP 18 seqs 2.20.3.3.4664 OTU 1 seq prokMSA_id:2896 unnamed organism 2.20.3.3.4665 OTU 1 seq prokMSA_id:2897 Gemmata obscuriglobus str. Schlesner 633 2.20.3.3.4666 OTU 1 seq prokMSA_id:2898 unnamed organism 2.20.3.3.4667 OTU 1 seq prokMSA_id:2899 clone 2BP-58 2.20.3.3.4690 OTU 3 seqs prokMSA_id:2892 Gemmata obscuriglobus DSM 5831 prokMSA_id:2893 Gemmata obscuriglobus ACM 2246 prokMSA_id:2895 Gemmata obscuriglobus str. UQM 2246 ACM 2224 2.20.3.3.4698 OTU 2 seqs prokMSA_id:83039 planctomycete clone CY0ARA027A08 of environmental sample of prokMSA_id:84729 planctomycete clone CY0ARA028B03 of environmental sample of 2.20.3.3.4719 OTU 1 seq prokMSA_id:73916 planctomycete clone20 2.20.3.3.4733 OTU 1 seq prokMSA_id:22723 Pietermaritzburg Y14-6 2.20.3.3.4752 OTU 1 seq prokMSA_id:23399 Gemmata-like str. JW11-2f5 2.20.3.3.4827 OTU 3 seqs prokMSA_id:41796 Gemmata-like str. JW9-3f1 prokMSA_id:42240 Gemmata-like str. Soil9 prokMSA_id:52302 Gemmata-like str. JW3-8s0 2.20.3.3.4843 OTU 1 seq prokMSA_id:60607 clone R38 2.20.3.3.4857 OTU 1 seq prokMSA_id:45545 clone Tc75 2.20.3.3.4925 OTU 1 seq prokMSA_id:22404 Gemmata-like str. CJuql4 2.20.4 ENVIRONMENTAL_CLONE_AGG27 1 seq 2.20.4.4755 OTU 1 seq prokMSA_id:2910 marine snow associated clone agg27 2.20.5 ENVIRONMENTAL_CLONE_A36O_GROUP 1 seq 2.20.5.4703 OTU 1 seq prokMSA_id:39730 clone GIF19 2.20.6 CHLAMYDOPHILA_SUBDIVISION 88 seqs 2.20.6.1 ENVIRONMENTAL_CLONE_WCHB1-58_GROUP 6 seqs 2.20.6.1.4668 OTU 2 seqs prokMSA_id:79860 candidate division OD1 clone Bol6 prokMSA_id:79995 candidate division OD1 clone Bol25 2.20.6.1.4760 OTU 1 seq prokMSA_id:2915 clone OPd3 2.20.6.1.4766 OTU 1 seq prokMSA_id:2916 clone LGd8 2.20.6.1.4771 OTU 1 seq prokMSA_id:2918 clone ACE-38 2.20.6.1.4915 OTU 1 seq prokMSA_id:35504 Crater Lake CL500-94 2.20.6.2 CHLAMYDOPHILA_GROUP 82 seqs 2.20.6.2.2 SMK.NEGEVENSIS_SUBGROUP 39 seqs 2.20.6.2.2.4663 OTU 2 seqs prokMSA_id:2934 Simkania negevensis str. Z prokMSA_id:2935 Simkania negevensis str. Z 2.20.6.2.2.4696 OTU 2 seqs prokMSA_id:2930 unnamed organism prokMSA_id:2933 unnamed organism 2.20.6.2.2.4702 OTU 1 seq prokMSA_id:83246 Candidatus Rhabdochlamydia porcellionis 2.20.6.2.2.4723 OTU 1 seq prokMSA_id:33207 Chlamydiales clone cvE9 complete 2.20.6.2.2.4743 OTU 2 seqs prokMSA_id:17182 Endosymbiont of Bemisia tabaci biotype Jatropha prokMSA_id:89521 Fritschea bemisiae YaeL yaeL cds; putative glycosylhydrolase 2.20.6.2.2.4758 OTU 1 seq prokMSA_id:24341 Neochlamydia hartmannellae 2.20.6.2.2.4787 OTU 1 seq prokMSA_id:2923 clone TAYNAYA-24 2.20.6.2.2.4790 OTU 1 seq prokMSA_id:2925 clone M12 2.20.6.2.2.4788 OTU 1 seq prokMSA_id:2924 clone BURTON-46 2.20.6.2.2.4823 OTU 2 seqs prokMSA_id:2920 Parachlamydia acanthamoebae prokMSA_id:49792 Parachlamydia sp. Hall's coccus 2.20.6.2.2.4834 OTU 12 seqs prokMSA_id:22160 Chlamydiales clone P-11 prokMSA_id:24629 Chlamydiales clone P-13 prokMSA_id:25769 Chlamydiales clone P-17 prokMSA_id:26915 Chlamydiales clone P-19 prokMSA_id:30860 Chlamydiales clone P-15 prokMSA_id:31998 Chlamydiales clone P-8 prokMSA_id:33726 Chlamydiales clone P-14 prokMSA_id:34118 Chlamydiales clone P-10 prokMSA_id:40042 Chlamydiales clone P-16 prokMSA_id:43225 Chlamydiales clone P-1 prokMSA_id:43574 Chlamydiales clone P-18 prokMSA_id:50356 Chlamydiales clone P-12 2.20.6.2.2.4836 OTU 3 seqs prokMSA_id:18839 Chlamydiales clone P-7 prokMSA_id:38880 Chlamydiales clone P-4 prokMSA_id:44515 Chlamydiales clone P-9 2.20.6.2.2.4886 OTU 1 seq prokMSA_id:23644 corvenA4 2.20.6.2.2.4898 OTU 1 seq prokMSA_id:2932 unnamed organism 2.20.6.2.2.4896 OTU 1 seq prokMSA_id:2931 unnamed organism 2.20.6.2.2.4909 OTU 1 seq prokMSA_id:2936 Waddlia chondrophila str. WSU 86/1044 2.20.6.2.2.4924 OTU 2 seqs prokMSA_id:45999 Chlamydiales clone P-3 prokMSA_id:51801 Chlamydiales clone P-5 AF364565 2.20.6.2.2.4926 OTU 1 seq prokMSA_id:30011 Chlamydiales MERTZ_2CM_173 2.20.6.2.2.4936 OTU 1 seq prokMSA_id:54620 Waddlia chondrophila complete ; and 23S 2.20.6.2.2.4946 OTU 1 seq prokMSA_id:31309 Chlamydiales clone cvE6 complete 2.20.6.2.2.4964 OTU 1 seq prokMSA_id:67842 Chlamydiales clone 44a-B1-34 2.20.6.2.3 CHLAMYDOPHILA_SUBGROUP 43 seqs 2.20.6.2.3.4685 OTU 2 seqs prokMSA_id:2945 Chlamydophila pneumoniae str. N16 prokMSA_id:2952 Chlamydophila pneumoniae str. N16 2.20.6.2.3.4686 OTU 3 seqs prokMSA_id:3024 Chlamydia suis str. S45 prokMSA_id:3025 Chlamydia suis str. R22 prokMSA_id:72345 Chlamydia suis strain S45 complete ; and 23S 2.20.6.2.3.4741 OTU 1 seq prokMSA_id:25273 Chlamydiales clone P-6 2.20.6.2.3.4820 OTU 6 seqs prokMSA_id:2948 Chlamydophila pneumoniae str. TW-183. L06108 prokMSA_id:3006 Chlamydophila pneumoniae prokMSA_id:3007 Chlamydophila pneumoniae str. CWL029 prokMSA_id:3008 Chlamydophila pneumoniae prokMSA_id:49993 Chlamydophila pneumoniae CWL029 complete genome NC_000922 prokMSA_id:90574 Chlamydophila pneumoniae TW-183 section 4 of 4 of the comple 2.20.6.2.3.4822 OTU 19 seqs prokMSA_id:2954 Chlamydia trachomatis str. 434 prokMSA_id:2955 Chlamydia trachomatis str. L2/434/BU ATCC VR-902B prokMSA_id:2956 Chlamydia trachomatis str. E/UW-5/Cx prokMSA_id:3009 Chlamydia trachomatis str. HAR-13. D89067 prokMSA_id:3010 Chlamydia trachomatis str. A.SA-1.OT. D88316 prokMSA_id:3011 Chlamydia trachomatis str. B/TW-5/OT prokMSA_id:3012 Chlamydia trachomatis str. C/TW-3/OT prokMSA_id:3013 Chlamydia trachomatis str. D/TW-3/CX. D85721 prokMSA_id:3014 Chlamydia trachomatis str. D/UW-3/CX. AE001345 prokMSA_id:3015 Chlamydia trachomatis str. D/UW-3/CX. AE001347 prokMSA_id:3041 Chlamydia muridarum str. MoPn/Wiess-Nigg prokMSA_id:3042 Chlamydia muridarum str. SFPD prokMSA_id:19114 Chlamydia trachomatis MoPn/Weiss-Nigg E17345 prokMSA_id:49665 Chlamydia trachomatis A/Har-13T E17344 prokMSA_id:50790 Chlamydia trachomatis complete genome NC_000117 prokMSA_id:52481 Chlamydia trachomatis complete genome AE001273 prokMSA_id:83720 Chlamydia muridarum section 12 of 85 of the complete genome prokMSA_id:84873 Chlamydia muridarum complete genome NC_002620 prokMSA_id:85637 Chlamydia muridarum section 11 of 85 of the complete genome 2.20.6.2.3.4826 OTU 12 seqs prokMSA_id:3027 Chlamydophila pecorum str. Bo/E58 prokMSA_id:3028 Chlamydophila pecorum str. BE. U73782 prokMSA_id:3029 Chlamydophila pecorum str. Bo/E8. U73785 prokMSA_id:3030 Chlamydia pecorum str. Bo/Shizuoka prokMSA_id:3031 Chlamydia pecorum str. Bo/Maeda prokMSA_id:3032 Chlamydophila pecorum str. Ov/IPA ATCC VR629 prokMSA_id:3033 Chlamydia pecorum str. Koala II prokMSA_id:3034 Chlamydia pecorum str. Bo-1485 prokMSA_id:3035 Chlamydia pecorum str. Bo-Maeda prokMSA_id:3036 Chlamydia pecorum str. Bo-Yokohama prokMSA_id:3037 Chlamydia pecorum str. SPV789 prokMSA_id:36991 Chlamydia pecorum Bo/Maeda E17343 2.20.7 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_II 10 seqs 2.20.7.4731 OTU 1 seq prokMSA_id:43121 verrucomicrobium DEV031 clone DEV031 2.20.7.4800 OTU 1 seq prokMSA_id:49106 planctomycete clone2 2.20.7.4830 OTU 3 seqs prokMSA_id:23308 clone Tc79 prokMSA_id:25369 clone Tc33 prokMSA_id:84908 soil clone TcA24 2.20.7.4840 OTU 1 seq prokMSA_id:3044 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.7.4839 OTU 1 seq prokMSA_id:3043 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.7.4841 OTU 1 seq prokMSA_id:3045 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.7.4842 OTU 1 seq prokMSA_id:3047 clone TM5 2.20.7.4865 OTU 1 seq prokMSA_id:45324 Metal-contaminated soil clone K20-32 2.21 CYANOBACTERIA_AND_CHLOROPLASTS 1144 seqs 2.21.1 CYANOBACTERIA 815 seqs 2.21.1.1 OSCILLATORIA_GROUP 94 seqs 2.21.1.1.4998 OTU 1 seq prokMSA_id:75533 clone HC-61 2.21.1.1.4999 OTU 1 seq prokMSA_id:25443 Geitlerinema PCC7105 2.21.1.1.5012 OTU 1 seq prokMSA_id:62920 Synechococcus sp. PCC 6312 2.21.1.1.5029 OTU 6 seqs prokMSA_id:3060 Synechococcus ATCC700243 str. C1 ATCC 700243 prokMSA_id:3063 Synechococcus elongatus prokMSA_id:40063 Synechococcus PCC6716 prokMSA_id:54965 Synechococcus PCC6717 prokMSA_id:55947 Thermosynechococcus elongatus BP-1 complete genome NC_004113 prokMSA_id:61266 Thermosynechococcus elongatus BP-1 complete genome section 8 2.21.1.1.5032 OTU 1 seq prokMSA_id:82269 Phormidium sp. ETS-05 isolate ETS-05 2.21.1.1.5038 OTU 3 seqs prokMSA_id:58155 Rumen YS2 prokMSA_id:84893 rumen clone BF2 AY244880 prokMSA_id:85761 rumen clone BF12 AY244890 2.21.1.1.5056 OTU 28 seqs prokMSA_id:3066 "Oscillatoria agardhii" str. CYA 18 prokMSA_id:3071 Planktothrix rubescens str. BC-Pla 9401 prokMSA_id:3072 Planktothrix rubescens str. BC-Pla 9303 prokMSA_id:16819 Oscillatoria sp. strain 49 prokMSA_id:56079 Planktothrix agardhii strain: CCAP 1459/21 prokMSA_id:58440 Planktothrix agardhii strain: NIES 596 prokMSA_id:58449 Planktothrix agardhii strain: NIVA CYA 88/3 prokMSA_id:58453 Planktothrix rubescens strain: NIVA CYA 85 prokMSA_id:58454 Planktothrix rubescens strain: NIVA CYA 73 prokMSA_id:58457 Planktothrix agardhii strain: NIVA CYA 59 prokMSA_id:58460 Planktothrix agardhii strain: NIVA CYA 56/3 prokMSA_id:58461 Planktothrix agardhii strain: NIVA CYA 34 prokMSA_id:58462 Planktothrix rubescens strain: NIVA CYA 35 prokMSA_id:58463 Planktothrix rubescens strain: NIVA CYA 320 prokMSA_id:58464 Planktothrix agardhii strain: NIVA CYA 313 prokMSA_id:58465 Planktothrix agardhii strain: NIVA CYA 30 prokMSA_id:58466 Planktothrix agardhii strain: NIVA CYA 29 prokMSA_id:58468 Planktothrix agardhii strain: NIVA CYA 229 prokMSA_id:58473 Planktothrix agardhii strain: NIVA CYA 15 prokMSA_id:58475 Planktothrix pseudagardhii strain: NIVA CYA 153 prokMSA_id:58477 Planktothrix rubescens strain: NIVA CYA 151 prokMSA_id:58480 Planktothrix rubescens strain: NIVA CYA 129 prokMSA_id:58482 Planktothrix agardhii strain: NIVA CYA 127 prokMSA_id:58487 Planktothrix agardhii strain: NIVA CYA 10 prokMSA_id:58497 Planktothrix agardhii starin:CCAP 1459/11A prokMSA_id:72966 Oscillatoria sp. strain 2 prokMSA_id:73793 Oscillatoria sp. strain CYA127 prokMSA_id:80934 Oscillatoria agardhii 2.21.1.1.5063 OTU 1 seq prokMSA_id:3082 "Oscillatoria williamsii" PCC 7105 2.21.1.1.5077 OTU 1 seq prokMSA_id:58491 Lyngbya hieronymusii var. hieronymusii strain: CN4-3 2.21.1.1.5078 OTU 8 seqs prokMSA_id:55562 Planktothrix pseudagardhii strain: T19-6'-8 AB045966 prokMSA_id:55697 Planktothrix mougeotii strain: TR1-5 prokMSA_id:56026 Planktothrix pseudagardhii strain: T19-6'-6 prokMSA_id:58430 Planktothrix mougeotii strain: TR2-4 prokMSA_id:58431 Planktothrix mougeotii strain: TK5-1 prokMSA_id:58432 Planktothrix pseudagardhii strain: T1-8-4 prokMSA_id:58433 Planktothrix mougeotii strain: TK4-5 prokMSA_id:58490 Planktothrix pseudagardhii strain: CW4-5 AB045907 2.21.1.1.5141 OTU 1 seq prokMSA_id:36764 cyanobacterium clone SM2C12 2.21.1.1.5159 OTU 6 seqs prokMSA_id:20614 Oscillatoria sp. Ant-G17 AF263334 prokMSA_id:26990 Oscillatoria acuminata prokMSA_id:32704 Oscillatoria sp. Ant-Salt AF263337 prokMSA_id:37596 Phormidium sp. Ant-Brack-3 AF263332 prokMSA_id:49230 Oscillatoria priestleyii prokMSA_id:51758 cyanobacterium isolate ikaite un-c15 2.21.1.1.5164 OTU 1 seq prokMSA_id:77762 clone:Rs-H34 2.21.1.1.5169 OTU 2 seqs prokMSA_id:3065 clone QSSC8L-2 prokMSA_id:25253 cyanobacterium QSSC8L-15 2.21.1.1.5178 OTU 6 seqs prokMSA_id:56232 Planktothricoides raciborskii strain: T1-6-2 prokMSA_id:58434 Planktothricoides raciborskii strain: NSLA4 prokMSA_id:58435 Planktothricoides raciborskii strain: OR1-1 prokMSA_id:58436 Planktothricoides raciborskii strain: NSLA3 prokMSA_id:58439 Planktothricoides raciborskii strain: NIES 207 prokMSA_id:58445 Planktothricoides raciborskii strain: INBaOR 2.21.1.1.5180 OTU 2 seqs prokMSA_id:67883 Microcoleus steenstrupii clone 177-7A prokMSA_id:67884 Microcoleus steenstrupii clone 177-7B 2.21.1.1.5184 OTU 6 seqs prokMSA_id:3059 Arthrospira sp. PCC 8005 prokMSA_id:35094 Arthrospira fusiformis prokMSA_id:69038 Arthrospira sp. FACHB438 complete ; tRNA-Ile and tRNA-Ala ge prokMSA_id:69039 Arthrospira sp. FACHB439 complete ; tRNA-Ile and tRNA-Ala ge prokMSA_id:70913 Arthrospira sp. strain PCC8005 prokMSA_id:80667 Spirulina platensis 2.21.1.1.5189 OTU 4 seqs prokMSA_id:34024 Microcoleus vaginatus PCC 9802 prokMSA_id:47726 Oscillatoria sancta prokMSA_id:74791 Oscillatoria sancta prokMSA_id:80595 Oscillatoria sp. PCC 7112 2.21.1.1.5200 OTU 8 seqs prokMSA_id:3048 Trichodesmium sp. NIBB 1067 prokMSA_id:3050 Trichodesmium hildebrandtii str. puff prokMSA_id:3051 Trichodesmium thiebautii str. puff. AF091321 prokMSA_id:3052 Trichodesmium erythraeum prokMSA_id:3053 Trichodesmium tenue prokMSA_id:3054 Trichodesmium contortum prokMSA_id:3055 Trichodesmium thiebautii prokMSA_id:59107 Trichodesmium havanum str. F34-5 2.21.1.1.5215 OTU 5 seqs prokMSA_id:3062 Arthrospira sp. PCC 7345 prokMSA_id:3064 Lyngbya confervoides PCC 7419 prokMSA_id:40937 Lyngbya aestuarii prokMSA_id:43562 Lyngbya hieronymusii AF337650 prokMSA_id:71484 Arthrospira sp. genes tRNA-Ile tRNA-Ala 23S 2.21.1.1.5220 OTU 1 seq prokMSA_id:35777 Oscillatoria sp. KCTC AG10184 2.21.1.1.5230 OTU 1 seq prokMSA_id:51024 Phormidium subfuscum 2.21.1.2 NOSTOC_GROUP 270 seqs 2.21.1.2.5004 OTU 2 seqs prokMSA_id:24719 Anabaena flos-aquae strain AWQC 264A prokMSA_id:42168 Anabaena cylindrica NIES19 AF247592 2.21.1.2.5015 OTU 1 seq prokMSA_id:83035 Chlorogloeopsis fritschii PCC 6912 2.21.1.2.5020 OTU 2 seqs prokMSA_id:71932 Scytonema hyalinum clone 144-3B + 159-3 prokMSA_id:73317 Scytonema hyalinum clone 144-3C + 159-3 2.21.1.2.5023 OTU 1 seq prokMSA_id:44224 Scytonema sp. U-3-3 2.21.1.2.5030 OTU 11 seqs prokMSA_id:20777 Fischerella sp. BB98.1 strain SAG 2027 prokMSA_id:45088 Hapalosiphon welwitschii prokMSA_id:60570 clone B95 prokMSA_id:60602 clone G01 prokMSA_id:70960 Fischerella sp. CENA19 prokMSA_id:80861 Fischerella muscicola prokMSA_id:81241 Cylindrospermum sp. CENA33 AY218831 prokMSA_id:82530 Fischerella major NIES 592 prokMSA_id:83042 Fischerella sp. IAM M-263 prokMSA_id:83639 Hapalosiphon delicatulus IAM M-266 prokMSA_id:85287 Hapalosiphon sp. IAM M-264 2.21.1.2.5027 OTU 2 seqs prokMSA_id:56564 Calothrix sp. CCMEE 5085 prokMSA_id:69425 Calothrix sp. CCMEE 5093 2.21.1.2.5028 OTU 5 seqs prokMSA_id:3101 Cylindrospermopsis raciborskii str. Solomon Dam Palm Island prokMSA_id:3102 Cylindrospermopsis raciborskii str. Solomon Dam Palm Island prokMSA_id:56040 Cylindrospermopsis raciborskii strain Aqc prokMSA_id:60833 Cylindrospermopsis raciborskii strain 05E prokMSA_id:72636 Cylindrospermopsis raciborskii strain LJ 2.21.1.2.5047 OTU 14 seqs prokMSA_id:19102 Anabaena circinalis AWQC307C prokMSA_id:19178 Anabaena circinalis AWT205B prokMSA_id:19855 Anabaena circinalis AWQC131C prokMSA_id:21891 Anabaena circinalis AWT204A prokMSA_id:23978 Anabaena circinalis AWQC150A prokMSA_id:30153 Anabaena circinalis AWQC271C prokMSA_id:36205 Anabaena affinis NIES40 prokMSA_id:39090 Anabaena circinalis AWT02 prokMSA_id:41035 Anabaena circinalis NIES41 prokMSA_id:42825 Anabaena circinalis AWQC279B prokMSA_id:45448 Anabaena circinalis AWQC344B prokMSA_id:49853 Anabaena circinalis AWQC118C prokMSA_id:50849 Anabaena circinalis AWQC323B prokMSA_id:52583 Anabaena circinalis AWQC173A 2.21.1.2.5057 OTU 77 seqs prokMSA_id:3100 str. watersample from Lake Loosdrecht prokMSA_id:3103 Nostoc punctiforme PCC 73102. AF027655 prokMSA_id:3105 Nostoc GSV224 str. GSV224. AF062637 prokMSA_id:3106 Nostoc ATCC53789 ATCC 53789. AF062638 prokMSA_id:3107 Nostoc TDI#AR94 str. TDI#AR94. AF027653 prokMSA_id:3108 Nostoc PCC9709 PCC 9709. AF027654 prokMSA_id:19807 Anabaena circinalis NIES-41 AB042859 prokMSA_id:20514 Anabaena circinalis AWQC331C prokMSA_id:20681 Aphanizomenon flos-aquae var. Klebahnii strain 218 AJ293123 prokMSA_id:20833 Anabaena solitaria strain 82 prokMSA_id:23120 Aphanizomenon flos-aquae strain NIES81 prokMSA_id:23731 Anabaena circinalis AWQC310F prokMSA_id:24012 Nostoc sp. strain 152 AJ133161 prokMSA_id:28360 Aphanizomenon flos-aquae strain NIES81 prokMSA_id:30002 Anabaena flos-aquae NRC44-1 prokMSA_id:31160 Aphanizomenon gracile strain PMC9402 prokMSA_id:31378 Spirirestis rafaelensis clone 143-2A + 159-1 AF334690 prokMSA_id:34443 Aphanizomenon sp. 'BC-Aph 9601' prokMSA_id:35407 Anabaena circinalis AWQC332H prokMSA_id:36941 Nostoc sp. AWT 203 AF317630 prokMSA_id:37515 Anabaena sp. 299 strain 299 AJ293106 prokMSA_id:38208 Anabaena flos-aquae AWQC112D prokMSA_id:40148 Aphanizomenon flos-aquae var. Klebahnii strain 83 AJ293122 prokMSA_id:40671 Anabaena crassa strain 215 prokMSA_id:41609 Anabaena flos-aquae strain PCC 9302 prokMSA_id:42144 Anabaena solitaria NIES80 prokMSA_id:43523 Anabaena spiroides strain PMC9702 prokMSA_id:43551 Anabaena planctonica strain 71 prokMSA_id:43633 Anabaena cf. Scheremetievi PMC9701 strain PMC9701 prokMSA_id:45965 Anabaena sp. strain A277 prokMSA_id:46184 Anabaena spiroides AB047104 prokMSA_id:48627 Anabaena circinalis AWQC134C prokMSA_id:48640 Anabaena flos-aquae NRC525-17 prokMSA_id:49357 Spirirestis rafaelensis clone 143-2B + 159-1 AF334691 prokMSA_id:53702 Aphanizomenon cf. flos-aquae PMC9501 strain PMC9501 prokMSA_id:54292 Anabaena Lemmermannii strain 256 AJ293113 prokMSA_id:55937 Nostoc sp. 'Nephroma parile cyanobiont 27' AF506252 prokMSA_id:56511 Nostoc sp. 'Peltigera venosa cyanobiont 15' AF506240 prokMSA_id:56651 Aphanizomenon sp. NH-5 prokMSA_id:58838 Nostoc sp. 'Nephroma resupinatum cyanobiont 40' AF506265 prokMSA_id:58839 Nostoc sp. 'Nephroma resupinatum cyanobiont 38' AF506263 prokMSA_id:58845 Nostoc sp. 'Nephroma helveticum cyanobiont 33' AF506258 prokMSA_id:58852 Nostoc sp. 'Nephroma parile cyanobiont 26' AF506251 prokMSA_id:58853 Nostoc sp. 'Muscicolous cyanobiont 21' AF506246 prokMSA_id:58854 Nostoc sp. 'Peltigera praetextata cyanobiont 22' AF506247 prokMSA_id:58857 Nostoc sp. 'Lobaria hallii cyanobiont 19' AF506244 prokMSA_id:58858 Nostoc sp. 'Peltigera pruinosa cyanobiont 18' AF506243 prokMSA_id:58861 Nostoc sp. 'Peltigera pruinosa cyanobiont 14' AF506239 prokMSA_id:63340 Nostoc commune strain:M-13 AB088405 prokMSA_id:69813 Anabaena sp strain 90 prokMSA_id:70327 Tolypothrix distorta clone 163-5B + 163-8 AF334694 prokMSA_id:71028 Anabaena Lemmermannii strain 202A2 prokMSA_id:71116 Aphanizomenon sp. 326 strain 326 prokMSA_id:71529 Nostoc sp. 'Parmeliella triptophylla cyanobiont 30' AF506255 prokMSA_id:71610 Aphanizomenon sp. strain TR183 prokMSA_id:71971 Nostoc sp. 'Lobaria pulmonaria cyanobiont 36' AF506261 prokMSA_id:72914 Anabaena sp. strain A202A1 prokMSA_id:72921 Aphanizomenon cf. gracile 271 strain 271 prokMSA_id:73017 Aphanizomenon flos-aquae strain PMC9401 prokMSA_id:73230 Nodularia spumigena strain NSLA02A4 AF268008 prokMSA_id:73276 Anabaena sp. strain 66A prokMSA_id:73348 Nostoc sp. 'Lobaria cyanobiont 34' AF506259 prokMSA_id:74202 Aphanizomenon sp. strain 202 prokMSA_id:74222 Nostoc sp. 'Nephroma helveticum cyanobiont 37' AF506262 prokMSA_id:74246 Anabaena cf. cylindrica PMC9705 strain PMC9705 prokMSA_id:74363 Aphanizomenon flos-aquae strain PMC9707 prokMSA_id:74386 Anabaena sp. strain CYA83/1 prokMSA_id:77866 Nostoc commune strain:KU002 AB088375 prokMSA_id:80843 Nostoc linckia AB074503 prokMSA_id:82666 Anabaena planctonica NIES 810 prokMSA_id:83183 Nostoc commune country:Japan:Ishikawa Kanazawa Asano River A prokMSA_id:86833 Nostoc sp. VI.5 AY112695 prokMSA_id:88320 Aphanizomenon flos-aquae str. 'Aph Zayi' AY196082 prokMSA_id:88923 Aphanizomenon issatschenkoi str. LEMCYA31 AY196088 prokMSA_id:89617 Aphanizomenon flos-aquae str. 'Aph Ku' AY196085 prokMSA_id:90379 Aphanizomenon flos-aquae str. 'Aph Inba' AY196083 prokMSA_id:96618 Nostoc sp. 'Bad Sachsa_BSC-16-N' AY422694 2.21.1.2.5072 OTU 23 seqs prokMSA_id:3091 Nodularia BCNOD9427 str. BCNOD9427 prokMSA_id:19362 Nodularia sp. strain PCC7804 prokMSA_id:20056 Nodularia harveyana strain PCC7804 prokMSA_id:24739 Nodularia harveyana strain UTEX-B2093 prokMSA_id:24971 Nodularia spumigena strain NSOR12 prokMSA_id:32123 Nodularia spumigena strain NSGL02A10 prokMSA_id:34133 Nodularia spumigena strain NSOR10 prokMSA_id:34506 Nodularia spumigena strain NSBL05 prokMSA_id:35491 Nodularia spumigena strain NSLA01 prokMSA_id:37800 Nodularia spumigena strain L575 prokMSA_id:40979 Nodularia spumigena strain NSOR04 prokMSA_id:44512 Nodularia spumigena strain NSPH02 prokMSA_id:46466 Nodularia spumigena prokMSA_id:46957 Nodularia spumigena strain UTEX-B2092 prokMSA_id:51799 Nodularia spumigena strain PCC73104 prokMSA_id:52046 Nodularia spumigena strain HEM prokMSA_id:70323 Nodularia spumigena strain BY1 prokMSA_id:71066 Nodularia sp. strain BY1 prokMSA_id:71521 Nodularia sp. strain GR8b prokMSA_id:71803 Nodularia sp. strain NSOR-12 prokMSA_id:72177 Nodularia sp. strain NSPI-05 prokMSA_id:72893 Nodularia sp. strain UP16f prokMSA_id:74014 Nodularia spumigena strain NSPH05A14 2.21.1.2.5071 OTU 1 seq prokMSA_id:3089 "Chlorogloeopsis" sp. str. HTF PCC 7518 2.21.1.2.5087 OTU 1 seq prokMSA_id:25956 Microcoleus sociatus MPI 96MS.KID 2.21.1.2.5103 OTU 3 seqs prokMSA_id:3093 "Calothrix desertica" PCC 7102 prokMSA_id:3097 "Calothrix D253" prokMSA_id:33939 Calothrix sp. strain PCC7714 2.21.1.2.5115 OTU 1 seq prokMSA_id:84987 Scytonema sp. IAM M-262 2.21.1.2.5132 OTU 6 seqs prokMSA_id:3084 Chroococcidiopsis sp. PCC 7203 prokMSA_id:23035 Chroococcidiopsis cubana strain SAG 39.79 prokMSA_id:34564 Chroococcidiopsis sp. BB82.3 strain SAG 2024 prokMSA_id:41207 Chroococcidiopsis thermalis prokMSA_id:72915 Chroococcidiopsis sp. BB84.1 strain SAG 2025 prokMSA_id:80235 Chroococcidiopsis sp. PCC 7431 2.21.1.2.5131 OTU 1 seq prokMSA_id:70663 Oscillatoria princeps strain: NIVA CYA 150 2.21.1.2.5142 OTU 1 seq prokMSA_id:35188 Lyngbya sp. UTCC296 2.21.1.2.5153 OTU 3 seqs prokMSA_id:34545 cyanobacterium clone TAF-B69 prokMSA_id:42801 cyanobacterium clone TAF-A32 AY038726 prokMSA_id:71940 cyanobacterium clone TAF-B14 2.21.1.2.5168 OTU 1 seq prokMSA_id:3104 clone WsCH31 2.21.1.2.5174 OTU 11 seqs prokMSA_id:3099 Cylindrospermopsis raciborskii str. AWT205 prokMSA_id:60818 Cylindrospermopsis raciborskii strain Florida I prokMSA_id:60821 Cylindrospermopsis raciborskii strain Florida G prokMSA_id:60822 Cylindrospermopsis raciborskii strain Florida F prokMSA_id:60823 Cylindrospermopsis raciborskii strain Caia prokMSA_id:60824 Cylindrospermopsis raciborskii strain Florida D prokMSA_id:60826 Cylindrospermopsis raciborskii strain 4799 prokMSA_id:60828 Cylindrospermopsis raciborskii strain Germany 2 prokMSA_id:60831 Cylindrospermopsis raciborskii strain Germany 1 prokMSA_id:60834 Cylindrospermopsis raciborskii strain 23B prokMSA_id:60840 Cylindrospermopsis raciborskii strain 09A 2.21.1.2.5175 OTU 5 seqs prokMSA_id:60830 Cylindrospermopsis raciborskii strain Brazil 2 prokMSA_id:60832 Cylindrospermopsis raciborskii strain Brazil 1 prokMSA_id:60838 Cylindrospermopsis raciborskii strain 24C prokMSA_id:60843 Cylindrospermopsis raciborskii strain Goon prokMSA_id:71065 Cylindrospermopsis raciborskii strain Mk 2.21.1.2.5187 OTU 1 seq prokMSA_id:3094 Phormidium ambiguum str. M-71 2.21.1.2.5191 OTU 5 seqs prokMSA_id:28247 Nodularia harveyana strain CDAC1983/300 prokMSA_id:29506 Cyanospira rippkae prokMSA_id:36477 Anabaena bergii prokMSA_id:45521 Anabaenopsis sp. PCC 9215 prokMSA_id:60819 Anabaenopsis sp. 1A 2.21.1.2.5194 OTU 1 seq prokMSA_id:3096 clone QSSC8L-3 2.21.1.2.5199 OTU 15 seqs prokMSA_id:3092 Nostoc muscorum PCC 7120 prokMSA_id:3095 "Anabaena variabilis" IAM M-3 prokMSA_id:28828 Anabaenopsis circularis NIES21 prokMSA_id:29130 Anabaena variabilis NIES23 prokMSA_id:44376 Nostoc sp. PCC 7120 complete genome section 7/19 AP003587 prokMSA_id:46727 Nostoc sp. PCC 7120 complete genome section 15/19 prokMSA_id:50880 Nostoc sp. PCC 7120 prokMSA_id:52227 Nostoc sp. PCC 7120 complete genome section 18/19 AP003598 prokMSA_id:53088 Nostoc sp. PCC 7120 complete genome section 8/19 AP003588 prokMSA_id:53707 Nostoc sp. PCC 7120 complete genome NC_003272 prokMSA_id:79820 Anabaena variabilis prokMSA_id:80820 Calothrix brevissima prokMSA_id:81799 Anabaena flos-aquae UTCC 64 prokMSA_id:83776 Tolypothrix sp. IAM M-259 prokMSA_id:90192 Nostoc sp. HK-01 AB085687 2.21.1.2.5204 OTU 1 seq prokMSA_id:32930 Phormidium murrayii 2.21.1.2.5217 OTU 1 seq prokMSA_id:80814 clone KD3-62 2.21.1.3 GLOEOTHECE-GLOEOCAPSA_GROUP 202 seqs 2.21.1.3.4992 OTU 2 seqs prokMSA_id:3159 Synechococcus ATCC700244 str. C9 ATCC 700244 prokMSA_id:47451 cyanobacterium clone SM1B04 2.21.1.3.4989 OTU 2 seqs prokMSA_id:3233 Spirulina P7 str. P7 prokMSA_id:50782 Spirulina sp. strain MPI S4 2.21.1.3.5002 OTU 18 seqs prokMSA_id:3244 Cyanothece sp. PCC 7418 prokMSA_id:3245 str. MPI 95AH10 prokMSA_id:3246 str. MPI 95AH13 prokMSA_id:3248 str. MPI 96N303 prokMSA_id:3249 str. MPI 96N304 prokMSA_id:3252 Dactylococcopsis sp. PCC 8305 prokMSA_id:17894 Euhalothece sp. strain MPI 96AL06 AJ000718 prokMSA_id:20240 Euhalothece sp. strain MPI 95AH11 AJ000717 prokMSA_id:22842 Cyanothece sp. PCC 7418 prokMSA_id:25353 Aphanothece sp. strain ATCC 43922 AJ000721 prokMSA_id:31941 Euhalothece sp. LK-1 AF459426 prokMSA_id:36657 cyanobacterium AF266668 prokMSA_id:42841 cyanobacterium clone P6.5 AJ248314 prokMSA_id:43885 Euhalothece sp. strain Syn CIP22 AJ000720 prokMSA_id:45745 Euhalothece sp. strain MPI 96P402 AJ000722 prokMSA_id:55647 Aphanothece naegelii strain KCTC AG10042 prokMSA_id:71416 Euhalothece sp. strain MPI 96AL03 AJ000719 prokMSA_id:92563 cyanobacterium DGGE band 8 AJ580973 2.21.1.3.5005 OTU 2 seqs prokMSA_id:3157 Cyanothece sp. PCC 7424 prokMSA_id:48404 Cyanothece sp. PCC 7424 2.21.1.3.5011 OTU 80 seqs prokMSA_id:3112 Microcystis aeruginosa prokMSA_id:3113 Microcystis aeruginosa prokMSA_id:3114 Microcystis aeruginosa str. NIES87 prokMSA_id:3119 Microcystis aeruginosa prokMSA_id:3121 Microcystis wesenbergii prokMSA_id:3122 Microcystis viridis prokMSA_id:3130 Microcystis viridis str. TAC17. AB012328 prokMSA_id:3131 Microcystis viridis str. TAC78. AB012331 prokMSA_id:3132 Microcystis aeruginosa str. TAC71. AB012332 prokMSA_id:3133 Microcystis wesenbergii str. TAC38. AB012334 prokMSA_id:3134 Microcystis novacekii str. TAC20 prokMSA_id:3135 Microcystis viridis str. NIES102 prokMSA_id:3161 Microcystis aeruginosa PCC 7806. Z28699 prokMSA_id:3162 Microcystis sp. str. KND9506 prokMSA_id:3163 Microcystis sp. str. P.R.China. AB012326 prokMSA_id:3164 Microcystis sp. str. P.R.China. AB012327 prokMSA_id:3165 Microcystis sp. str. Thailand prokMSA_id:3166 Microcystis sp. str. Thailand prokMSA_id:3167 Microcystis aeruginosa str. TAC86 prokMSA_id:3168 Microcystis wesenbergii str. TAC52 prokMSA_id:3169 Microcystis novacekii str. TAC65 prokMSA_id:3170 Microcystis ichthyoblabe str. TAC48 prokMSA_id:3171 Microcystis aeruginosa str. TAC170 prokMSA_id:3177 Microcystis ichthyoblabe prokMSA_id:3191 Microcystis aeruginosa PCC 7806. U03402 prokMSA_id:3213 Microcystis sp. str. AWT139 prokMSA_id:3235 Microcystis wesenbergii prokMSA_id:3236 Microcystis aeruginosa str. NIES98 prokMSA_id:3237 Microcystis wesenbergii str. NIES111 prokMSA_id:3241 Microcystis aeruginosa prokMSA_id:16345 Microcystis aeruginosa strain UWOCC C4 AF139316 prokMSA_id:16837 Microcystis sp. 'UWOCC BauldE' strain UWOCC BauldE AF139312 prokMSA_id:17617 Microcystis aeruginosa strain UWOCC M4 prokMSA_id:17755 Microcystis aeruginosa strain UWOCC MR-B AF139322 prokMSA_id:18186 Microcystis sp. 'UWOCC Q' prokMSA_id:18594 Microcystis aeruginosa strain UWOCC AubB1 prokMSA_id:18622 Microcystis aeruginosa strain UWOCC RID-1 AF139317 prokMSA_id:19980 Microcystis flos-aquae strain UWOCC C2 AF139328 prokMSA_id:21664 Microcystis aeruginosa strain UWOCC Bauld5A AF139305 prokMSA_id:24627 Microcystis aeruginosa strain UWOCC S-15-b AF139325 prokMSA_id:25608 Microcystis ichthyoblabe prokMSA_id:26154 Microcystis sp. strain 269 prokMSA_id:26766 Microcystis aeruginosa strain UWOCC AK-1 AF139303 prokMSA_id:27566 Microcystis sp. 'UWOCC K' AF139309 prokMSA_id:27606 Microcystis aeruginosa AB035549 prokMSA_id:27662 Microcystis aeruginosa strain UWOCC P3 AF139314 prokMSA_id:28391 Microcystis wesenbergii AB035553 prokMSA_id:28651 Microcystis aeruginosa strain UWOCC C1 prokMSA_id:29068 Microcystis novacekii prokMSA_id:29230 Microcystis aeruginosa strain UWOCC E7 AF139326 prokMSA_id:29257 Microcystis aeruginosa strain UWOCC MR-C AF139323 prokMSA_id:34524 Microcystis aeruginosa strain UWOCC C5 prokMSA_id:35129 Microcystis flos-aquae strain UWOCC C3 AF139329 prokMSA_id:35467 Microcystis aeruginosa strain UWOCC 84/1 AF139301 prokMSA_id:37777 Microcystis sp. strain GL280641 prokMSA_id:37828 Microcystis aeruginosa strain UWOCC AKGV- AF139302 prokMSA_id:38719 Microcystis sp. 'UWOCC MSU28-1' AF139310 prokMSA_id:39102 Microcystis aeruginosa strain UWOCC 017 AF139294 prokMSA_id:39573 Microcystis aeruginosa strain PCC 7820 AF139300 prokMSA_id:39760 Microcystis sp. 'UWOCC F' strain UWOCC F AF139308 prokMSA_id:40291 Microcystis flos-aquae strain UWOCC N prokMSA_id:40536 Microcystis aeruginosa strain UWOCC MR-A AF139320 prokMSA_id:40548 Microcystis aeruginosa strain UWOCC 006 prokMSA_id:40647 Microcystis aeruginosa strain UWOCC MR-B AF139321 prokMSA_id:41065 Microcystis aeruginosa strain UWOCC MSU28-2 AF139313 prokMSA_id:42696 Microcystis sp. strain NIES104 prokMSA_id:43227 Microcystis sp. strain 199 prokMSA_id:43518 Microcystis sp. 'UWOCC BauldB' AF139306 prokMSA_id:45553 Microcystis viridis AB035552 prokMSA_id:47759 Microcystis aeruginosa strain PCC 7806 AF139299 prokMSA_id:48796 Microcystis aeruginosa strain UWOCC 019 prokMSA_id:49423 Microcystis aeruginosa strain UWOCC 024 prokMSA_id:49574 Microcystis sp. 'UWOCC CBS' strain UWOCC CBS AF139307 prokMSA_id:50935 Microcystis aeruginosa strain UWOCC 023 AF139296 prokMSA_id:51805 Microcystis aeruginosa strain UWOCC MR-D AF139324 prokMSA_id:52503 Microcystis aeruginosa strain UWOCC 001 AF139292 prokMSA_id:52726 Microcystis aeruginosa strain UWOCC 026 AF139298 prokMSA_id:60879 clone SG2-6 prokMSA_id:70007 Microcystis sp. strain 130 prokMSA_id:71454 Microcystis sp. strain PCC7941 2.21.1.3.5017 OTU 1 seq prokMSA_id:62923 Synechococcus sp. PCC 8806 2.21.1.3.5013 OTU 4 seqs prokMSA_id:24354 Oscillatoria sp. 3-SLR7 prokMSA_id:33445 Oscillatoria sp. UTCC487 prokMSA_id:37748 Oscillatoria cf. laetevirens Baja-Osc-1 AF268490 prokMSA_id:43803 Oscillatoria sp. 1-SLR2 AF230966 2.21.1.3.5031 OTU 4 seqs prokMSA_id:67712 Cyanothece sp. SKTU126 genes Ile-tRNA 23S and complete prokMSA_id:67714 Gloeothece sp. KO68DGA genes Ile-tRNA 23S and complete prokMSA_id:67719 Gloeothece sp. KO11DG genes r Ile-tRNA 23S and complete prokMSA_id:67720 Gloeothece sp. SK40 genes Ile-tRNA 23S and complete 2.21.1.3.5034 OTU 1 seq prokMSA_id:56680 Spirulina subsalsa complete ; tRNA-Ile complete ; and 23S 2.21.1.3.5046 OTU 1 seq prokMSA_id:3208 Xenococcus PCC7305 PCC 7305 2.21.1.3.5044 OTU 1 seq prokMSA_id:3206 "Oscillatoria corallinae" str. CJ1 SAG8.92 2.21.1.3.5049 OTU 1 seq prokMSA_id:59109 Oscillatoria spongeliae 520bg 2.21.1.3.5050 OTU 2 seqs prokMSA_id:3211 unnamed organism prokMSA_id:3230 unnamed organism 2.21.1.3.5054 OTU 1 seq prokMSA_id:17732 cyanobacterium LR-3L 2.21.1.3.5052 OTU 1 seq prokMSA_id:3231 Cyanobacterium stanieri PCC 7202 2.21.1.3.5085 OTU 1 seq prokMSA_id:41164 prochlorophyte CtaxPhil-25 2.21.1.3.5081 OTU 1 seq prokMSA_id:29085 Synechocystis PCC6308 2.21.1.3.5086 OTU 1 seq prokMSA_id:3232 Spirulina subsalsa str. M-223 2.21.1.3.5090 OTU 3 seqs prokMSA_id:39534 Halospirulina sp.'MPI S3' prokMSA_id:71513 Halospirulina tapeticola strain CCC Baja-95 Cl.2 prokMSA_id:72932 Halospirulina sp.'CCC Baja-95 Cl.3' 2.21.1.3.5093 OTU 1 seq prokMSA_id:49732 cyanobacterium clone CD1401B9 2.21.1.3.5104 OTU 2 seqs prokMSA_id:44601 cyanobacterium clone SM2A06 prokMSA_id:74772 cyanobacterium clone SM1D12 2.21.1.3.5113 OTU 3 seqs prokMSA_id:33394 cyanobacterium prokMSA_id:34157 cyanobacterium prokMSA_id:40423 cyanobacterium 2.21.1.3.5116 OTU 3 seqs prokMSA_id:3116 Merismopedia glauca str. B1448-1 prokMSA_id:27910 Synechocystis PCC6702 prokMSA_id:82137 Synechocystis sp. PCC 6803 2.21.1.3.5118 OTU 1 seq prokMSA_id:26120 Oscillatoria sp. MPI 990BR03 2.21.1.3.5127 OTU 1 seq prokMSA_id:17093 Gloeocapsa PCC73106 2.21.1.3.5134 OTU 2 seqs prokMSA_id:24455 Chroococcidiopsis sp. PCC 6712 strain PCC 6712 prokMSA_id:42907 Chroococcidiopsis PCC6712 2.21.1.3.5138 OTU 2 seqs prokMSA_id:35765 Chroococcidiopsis sp. BB96.1 strain SAG 2026 prokMSA_id:71326 Chroococcidiopsis sp. BB79.2 SAG 2023 2.21.1.3.5144 OTU 3 seqs prokMSA_id:25314 cyanobacterium clone SM1D04 prokMSA_id:28685 cyanobacterium clone SM1F09 prokMSA_id:40359 cyanobacterium clone SM1C10 2.21.1.3.5148 OTU 4 seqs prokMSA_id:16431 Cyanobacterial symbiont MY4 host: Mycale sp. strain MY4 prokMSA_id:17869 Cyanobacterial symbiont MY2 host: Mycale sp. strain MY2 prokMSA_id:39596 Cyanobacterial symbiont MY3 host: Mycale sp. strain MY3 prokMSA_id:40771 Cyanobacterial symbiont MY17 host: Mycale sp. strain MY17 2.21.1.3.5152 OTU 2 seqs prokMSA_id:28876 Stanieria cyanosphaera prokMSA_id:48280 Stanieria cyanosphaera 2.21.1.3.5151 OTU 2 seqs prokMSA_id:16864 cyanobacterium prokMSA_id:26117 cyanobacterium 128-56 2.21.1.3.5162 OTU 3 seqs prokMSA_id:22139 Lyngbya sp. NIH309 prokMSA_id:35119 Lyngbya sp. VP417b prokMSA_id:46480 Lyngbya sp. VP417a 2.21.1.3.5167 OTU 5 seqs prokMSA_id:3158 Cyanothece ATCC51142 ATCC 51142 prokMSA_id:27671 Symbiont of Climacodium frauenfeldianum prokMSA_id:55668 Gloeocapsa sp. KO38CU6 genes Ile-tRNA 23S and complete prokMSA_id:67713 Gloeocapsa sp. KO30D1 genes Ile-tRNA 23S and complete prokMSA_id:67715 Gloeocapsa sp. KO20B5 genes Ile-tRNA 23S and complete 2.21.1.3.5165 OTU 5 seqs prokMSA_id:21210 Symploca sp. VP642c prokMSA_id:36962 Symploca PCC8002 prokMSA_id:45181 Symploca sp. VP642a AY032932 prokMSA_id:52817 Symploca sp. VP642b prokMSA_id:53953 Symploca sp. VP377 2.21.1.3.5172 OTU 1 seq prokMSA_id:69683 Cyanobacterium sp. MBIC10216 2.21.1.3.5186 OTU 1 seq prokMSA_id:83349 cyanobacterium clone ST01-SN2C 2.21.1.3.5201 OTU 1 seq prokMSA_id:28368 glaucocystophycean clone CD5A12 ; chloroplast chloroplast pr 2.21.1.3.5198 OTU 17 seqs prokMSA_id:3118 Myxosarcina sp. PCC 7312. NONE prokMSA_id:3207 Pleurocapsa sp. PCC 7516 prokMSA_id:24335 Pleurocapsa PCC7319 prokMSA_id:24838 Chroococcidiopsis sp. CCMP1489 strain CCMP1489 prokMSA_id:42381 Myxosarcina sp. PCC 7312 strain PCC 7312 prokMSA_id:45178 Myxosarcina sp. PCC 7325 strain PCC 7325 AJ344562 prokMSA_id:45775 Dermocarpella incrassata strain SAG 29.84 prokMSA_id:46080 Stanieria PCC7301 prokMSA_id:46462 Pleurocapsa minor strain SAG 4.99 prokMSA_id:69285 Dermocarpa sp. MBIC10056 AB058218 prokMSA_id:69707 Dermocarpa sp. MBIC10768 AB058287 prokMSA_id:69734 Dermocarpa sp. MBIC10001 prokMSA_id:71088 Dermocarpa sp. MBIC10765 AB058284 prokMSA_id:71478 Dermocarpa sp. MBIC10766 AB058285 prokMSA_id:74148 Dermocarpa sp. MBIC10004 prokMSA_id:80524 Xenococcus sp. PCC 7307 prokMSA_id:80822 Pleurocapsa sp. PCC 7314 2.21.1.3.5202 OTU 1 seq prokMSA_id:3240 Gloeothece membranacea 2.21.1.3.5207 OTU 8 seqs prokMSA_id:3124 Synechococcus sp. PCC 7003 prokMSA_id:3125 "Oscillatoria rosea" str. M-220 prokMSA_id:3126 Synechococcus sp. PCC 7117 prokMSA_id:3127 Synechococcus sp. PCC 73109 prokMSA_id:17081 Synechococcus sp. strain PCC 7002 prokMSA_id:42888 Synechococcus sp prokMSA_id:55776 Synechococcus sp. PCC 8807 prokMSA_id:71525 Synechococcus sp. PH40 2.21.1.3.5208 OTU 1 seq prokMSA_id:3247 Halothece 'MPI 96P605' str. MPI 96P605 2.21.1.3.5213 OTU 1 seq prokMSA_id:3253 Prochloron didemni 2.21.1.3.5218 OTU 1 seq prokMSA_id:49254 Pleurocapsa PCC7327 2.21.1.3.5219 OTU 3 seqs prokMSA_id:62922 Synechococcus sp. HOG prokMSA_id:62924 Synechococcus sp. UH7 prokMSA_id:62925 Synechococcus sp. T71 2.21.1.3.5238 OTU 1 seq prokMSA_id:35028 Cyanothece sp. PCC 8801 2.21.1.4 LEPTOLYNGBYA_GROUP 34 seqs 2.21.1.4.4978 OTU 1 seq prokMSA_id:70492 LPP-group MBIC10087 2.21.1.4.4991 OTU 2 seqs prokMSA_id:36979 Oscillatoria sp. J-24-Osc prokMSA_id:71468 Oscillatoria sp. OH25 2.21.1.4.4996 OTU 1 seq prokMSA_id:31912 Fischerella muscicola 2.21.1.4.4995 OTU 3 seqs prokMSA_id:70722 Oscillatoria amphigranulata strain 19-2 AF317504 prokMSA_id:73716 Oscillatoria amphigranulata strain 11-3 AF317503 prokMSA_id:74082 Oscillatoria amphigranulata strain 23-3 2.21.1.4.5025 OTU 3 seqs prokMSA_id:3276 unnamed organism prokMSA_id:3277 unnamed organism prokMSA_id:94377 Antarctic cyanobacterium clone Fr397 complete AY151735 2.21.1.4.5070 OTU 1 seq prokMSA_id:3263 clone OPI-8 2.21.1.4.5067 OTU 1 seq prokMSA_id:3260 unnamed organism 2.21.1.4.5074 OTU 1 seq prokMSA_id:3268 clone QSSC8L-6 2.21.1.4.5075 OTU 1 seq prokMSA_id:3269 clone QSSC8L-8 2.21.1.4.5084 OTU 1 seq prokMSA_id:51795 Phormidium tenue 2.21.1.4.5091 OTU 1 seq prokMSA_id:3274 unnamed organism 2.21.1.4.5126 OTU 3 seqs prokMSA_id:67764 cyanobacterium TFWG prokMSA_id:72108 Leptolyngbya sp. PCC 9207 AF317506 prokMSA_id:74282 Leptolyngbya sp. PCC 9221 AF317507 2.21.1.4.5157 OTU 9 seqs prokMSA_id:3279 Leptolyngbya boryanum PCC 73110. NONE prokMSA_id:3280 Leptolyngbya foveolarum str. Komarek 1964/112 prokMSA_id:3281 "Plectonema boryanum" UTEX 485 prokMSA_id:3282 "Oscillatoria" sp. str. M-117 prokMSA_id:3283 Phormidium sp. str. M-99 prokMSA_id:39175 Phormidium tenue prokMSA_id:41034 Phormidium tenue AF337652 prokMSA_id:43289 Phormidium molle prokMSA_id:45010 Phormidium pachydematicum 2.21.1.4.5188 OTU 1 seq prokMSA_id:57549 Acaryochloris marina strain MBIC 11017 2.21.1.4.5197 OTU 4 seqs prokMSA_id:3255 Chamaesiphon subglobosus PCC 7430 prokMSA_id:3261 unnamed organism prokMSA_id:3262 unnamed organism prokMSA_id:40204 cyanobacterium clone TAF-B74 AY038733 2.21.1.4.5205 OTU 1 seq prokMSA_id:40082 Synechococcus PCC7902 2.21.1.6 PHORMIDIUM_GROUP 15 seqs 2.21.1.6.4985 OTU 1 seq prokMSA_id:85621 cyanobacterium clone FBP290 2.21.1.6.4993 OTU 1 seq prokMSA_id:38561 Oscillatoria sp 2.21.1.6.5010 OTU 1 seq prokMSA_id:3289 str. QSSC5cya 2.21.1.6.5064 OTU 2 seqs prokMSA_id:3288 "Oscillatoria neglecta" str. M-82 prokMSA_id:34894 Leptolyngbya PCC7104 2.21.1.6.5069 OTU 1 seq prokMSA_id:56488 LPP-group MBIC10086 2.21.1.6.5190 OTU 7 seqs prokMSA_id:3259 Synechococcus sp. PCC 7335. AB015062 prokMSA_id:3290 str. QSSC8cya. AF170758 prokMSA_id:3293 "Plectonema F3" str. F3 prokMSA_id:69558 Phormidium sp. MBIC10002 prokMSA_id:73558 LPP-group MBIC10597 prokMSA_id:83595 cyanobacterium clone FBP256 prokMSA_id:94566 Antarctic cyanobacterium clone BGC-Fr054 complete AY151722 2.21.1.6.5210 OTU 1 seq prokMSA_id:85304 cyanobacterium clone FBP403 2.21.1.6.5211 OTU 1 seq prokMSA_id:3287 Phormidium minutum str. D5 2.21.1.8 MICROCYSTIS_GROUP 8 seqs 2.21.1.8.5048 OTU 1 seq prokMSA_id:17697 Planktothrix sp. FP1 2.21.1.8.5083 OTU 1 seq prokMSA_id:3304 clone LD7 2.21.1.8.5088 OTU 1 seq prokMSA_id:3307 Microcystis elabens 2.21.1.8.5125 OTU 5 seqs prokMSA_id:3299 Synechococcus sp. PCC 6301. X03538 prokMSA_id:3303 Synechococcus sp. PCC 7942 prokMSA_id:28050 Synechococcus sp. PCC 7942 prokMSA_id:50219 Synechococcus PCC7943 prokMSA_id:81974 Synechococcus sp. BD-1 2.21.1.9 PRC.MARINUS_GROUP 192 seqs 2.21.1.9.5001 OTU 1 seq prokMSA_id:60158 clone TK09 2.21.1.9.5051 OTU 1 seq prokMSA_id:37044 soil PBS-III-24 2.21.1.9.5076 OTU 189 seqs prokMSA_id:3315 Sargasso Sea clone SAR 139 prokMSA_id:3320 Sargasso Sea clone SAR 7 prokMSA_id:3328 str. watersample from Lake Loosdrecht prokMSA_id:3333 Microcystis holsatica str. NIES43 prokMSA_id:3335 Synechococcus PCC6307 PCC 6307. AF001477 prokMSA_id:3338 Synechococcus WH8101 str. WH8101 prokMSA_id:3339 Synechococcus WH7803 str. WH7803 prokMSA_id:3341 Synechococcus sp. str. Biwa-G0 prokMSA_id:3343 str. ACE prokMSA_id:3344 str. PENDANT prokMSA_id:3345 str. ABRAXAS prokMSA_id:3346 Synechococcus sp. PCC 7001. AB015058 prokMSA_id:3347 Prochlorococcus MIT9303 str. MIT9303 prokMSA_id:3348 Prochlorococcus MIT9313 str. MIT9313 prokMSA_id:3350 Sargasso Sea clone SAR 6 prokMSA_id:3351 Prochlorococcus MIT9201 str. MIT9201 prokMSA_id:3352 Prochlorococcus MIT9202 str. MIT9202 prokMSA_id:3353 Prochlorococcus MIT9211 str. MIT9211 prokMSA_id:3372 str. P211 prokMSA_id:3373 str. P212 prokMSA_id:3374 Microcystis elabens str. NIES42 prokMSA_id:3375 Prochlorococcus marinus PCC 9511 prokMSA_id:3376 Prochlorococcus MIT9302 str. MIT9302 prokMSA_id:3377 Prochlorococcus MIT9312 str. MIT9312 prokMSA_id:16741 Synechococcus PCC7918 AF216947 prokMSA_id:21853 Synechococcus sp. WH 7803 AF311291 prokMSA_id:22119 cyanobacterium clone:B7 prokMSA_id:22911 Synechococcus PCC9005 AF216950 prokMSA_id:23065 Synechococcus NAC1-5 prokMSA_id:28802 Synechococcus sp. strain GL150636 prokMSA_id:28869 Cyanobacterium 5X15 prokMSA_id:29390 Synechococcus sp. PS680 prokMSA_id:30769 Prochlorococcus marinus subsp. pastoris str. NATL2 prokMSA_id:30851 Synechococcus sp. PS721 AF216954 prokMSA_id:33102 Prochlorococcus marinus subsp. pastoris str. NATL1 prokMSA_id:33530 Synechococcus sp. WH 8018 prokMSA_id:33656 Synechococcus sp. PS723 AF216955 prokMSA_id:37989 Synechococcus PCC7009 AF216945 prokMSA_id:38616 Synechococcus sp. PS715 prokMSA_id:38890 Prochlorococcus marinus str. TAK9803-2 prokMSA_id:45601 Synechococcus sp. PS717 AF216953 prokMSA_id:46334 Synechococcus PCC7920 prokMSA_id:46500 Synechococcus sp. AB4192 prokMSA_id:46690 Synechococcus PCC6904 AF216944 prokMSA_id:47172 Synechococcus sp. WH 8103 AF311293 prokMSA_id:49782 Prochlorococcus marinus str. EQPAC1 prokMSA_id:52928 Synechococcus sp. BO8807 ; internal transcribed spacer 1 com prokMSA_id:53000 Synechococcus sp. BS4 ; internal transcribed spacer 1 comple prokMSA_id:53150 Synechococcus sp. BO8801 ; internal transcribed spacer 1 com prokMSA_id:53206 Synechococcus sp. LBB3 ; internal transcribed spacer 1 compl prokMSA_id:53228 Synechococcus sp. BO8806 ; internal transcribed spacer 1 com prokMSA_id:53283 Synechococcus sp. BGS171 ; internal transcribed spacer 1 com prokMSA_id:53331 Synechococcus rubescens ; internal transcribed spacer 1 comp prokMSA_id:53471 Synechococcus sp. BS20 ; internal transcribed spacer 1 compl prokMSA_id:53495 Synechococcus sp. LM94 ; internal transcribed spacer 1 compl prokMSA_id:53650 Synechococcus sp. BO0014 ; internal transcribed spacer 1 com prokMSA_id:53839 Synechococcus sp. BO981502 ; internal transcribed spacer 1 c prokMSA_id:53923 Synechococcus sp. BO9404 ; internal transcribed spacer 1 com prokMSA_id:54164 Synechococcus sp. BO984127 ; internal transcribed spacer 1 c prokMSA_id:54219 Synechococcus sp. BO8805 ; internal transcribed spacer 1 com prokMSA_id:54464 Synechococcus sp. LBP1 ; internal transcribed spacer 1 compl prokMSA_id:54469 Synechococcus sp. BO983115 ; internal transcribed spacer 1 c prokMSA_id:54577 Synechococcus sp. BS5 ; internal transcribed spacer 1 comple prokMSA_id:54601 Synechococcus sp. LBG2 ; internal transcribed spacer 1 compl prokMSA_id:58392 Synechococcus sp. MB11A04 ; tRNA-Ile and tRNA-Ala genes comp prokMSA_id:58393 Synechococcus sp. MB11E09 ; tRNA-Ile and tRNA-Ala genes comp prokMSA_id:59293 Synechococcus sp. WH 8012 prokMSA_id:62926 Synechococcus sp. PCC 8966 AF448072 prokMSA_id:62927 Synechococcus sp. PCC 8916 AF448071 prokMSA_id:62928 Synechococcus sp. PS845 prokMSA_id:62929 Synechococcus sp. PS840 prokMSA_id:62930 Synechococcus sp. PS838 prokMSA_id:62931 Synechococcus sp. TAGS prokMSA_id:62932 Synechococcus sp. TAG AF448066 prokMSA_id:62933 Synechococcus sp. NAN prokMSA_id:62934 Synechococcus sp. HOS AF448064 prokMSA_id:62935 Synechococcus sp. UBR prokMSA_id:62937 Synechococcus sp. T7cc1 AF448061 prokMSA_id:62939 Synechococcus sp. 1002 prokMSA_id:62940 Synechococcus sp. IR48 prokMSA_id:68984 Prochlorococcus sp. MB11F02 ; tRNA-Ile and tRNA-Ala genes co prokMSA_id:68986 Prochlorococcus sp. MB11E08 ; tRNA-Ile and tRNA-Ala genes co prokMSA_id:69178 Synechococcus sp. MBIC10459 prokMSA_id:69200 Synechococcus sp. MW28B3 complete AY151235 prokMSA_id:69228 Synechococcus sp. MBIC10224 AB058250 prokMSA_id:69485 Synechococcus sp. MW26A5 complete AY151234 prokMSA_id:69531 Synechococcus sp. MW76B2 complete AY151245 prokMSA_id:69544 Synechococcus sp. MW73D5 complete AY151241 prokMSA_id:69548 Synechococcus sp. MW99B6 complete prokMSA_id:69574 Synechococcus sp. MW72C6 complete AY151240 prokMSA_id:69638 Synechococcus sp. MW101C3 complete prokMSA_id:69725 Synechococcus sp. MW15-2 complete AY151232 prokMSA_id:69965 Synechococcus sp. MW74D6 complete AY151242 prokMSA_id:70279 Synechococcus sp. MW25B5 complete AY151233 prokMSA_id:70431 Synechococcus sp. MLS1228cl3 prokMSA_id:70534 Synechococcus sp. MW77D1 complete AY151246 prokMSA_id:70666 Synechococcus sp. MW6B4 complete AY151239 prokMSA_id:70678 Synechococcus sp. MBIC10089 prokMSA_id:71118 Synechococcus sp. MW10#1 complete prokMSA_id:71256 Synechococcus sp. MW73B4 complete AY151250 prokMSA_id:71906 Synechococcus sp. MBIC10456 prokMSA_id:72087 Synechococcus sp. MW4C3 complete prokMSA_id:72387 Synechococcus sp. MW32B5 complete prokMSA_id:72502 clone Sta0-25 prokMSA_id:72834 Synechococcus sp. MW6C6 complete AY151243 prokMSA_id:73727 Synechococcus sp. MBIC10007 prokMSA_id:74342 Synechococcus sp. MW33B4 complete AY151237 prokMSA_id:74359 Synechococcus sp. MW97C4 complete prokMSA_id:74397 Synechococcus sp. MW74D3 complete AY151244 prokMSA_id:79102 clone ZA3242c prokMSA_id:79129 clone ZA3421c prokMSA_id:79192 clone ZA3833c prokMSA_id:79250 Cyanobium sp. LB03 prokMSA_id:79350 clone ZA3703c prokMSA_id:79456 Synechococcus sp. clone 46Fr prokMSA_id:79569 clone ZA3803c prokMSA_id:81048 Synechococcus sp. clone A715009 AY125366 prokMSA_id:81268 Synechococcus sp. clone A315006 AY125377 prokMSA_id:81277 Synechococcus sp. clone A715016 prokMSA_id:81379 Synechococcus sp. clone A715001 prokMSA_id:81393 Synechococcus sp. clone A315003 prokMSA_id:81413 Synechococcus sp. clone A715015 prokMSA_id:81449 Synechococcus sp. clone A715003 prokMSA_id:81631 Synechococcus sp. clone A715005 prokMSA_id:81638 Synechococcus sp. clone A315025 prokMSA_id:81662 Synechococcus sp. clone A315023 prokMSA_id:81715 Synechococcus sp. clone A715004 prokMSA_id:81769 Synechococcus sp. clone A715013 prokMSA_id:81828 Synechococcus sp. clone A315002 prokMSA_id:81859 Synechococcus sp. clone A715006 prokMSA_id:81872 Synechococcus sp. clone A715012 prokMSA_id:81898 Synechococcus sp. clone A315010 prokMSA_id:82121 Synechococcus sp. clone A715011 prokMSA_id:82146 Synechococcus sp. clone A315004 prokMSA_id:82220 Synechococcus sp. clone A715014 prokMSA_id:82249 Synechococcus sp. clone A315011 prokMSA_id:82268 Synechococcus sp. clone A715002 prokMSA_id:82280 Synechococcus sp. clone A315008 prokMSA_id:82376 Synechococcus sp. clone A315020 prokMSA_id:82398 Synechococcus sp. clone A315026 prokMSA_id:82763 Synechococcus sp. CC9311 prokMSA_id:82788 Synechococcus sp. WH 5701 prokMSA_id:83008 Synechococcus sp. RS9918 AY172828 prokMSA_id:83014 Synechococcus sp. RS9904 AY172814 prokMSA_id:83015 Synechococcus sp. RS9905 AY172815 prokMSA_id:83121 Synechococcus sp. Minos12 prokMSA_id:83222 Synechococcus sp. RS9902 AY172812 prokMSA_id:83391 Synechococcus sp. WH 8016 prokMSA_id:83400 Synechococcus sp. MH305 prokMSA_id:83422 Synechococcus sp. WH 8002 AY172833 prokMSA_id:83438 Synechococcus sp. RS9910 AY172820 prokMSA_id:83522 Synechococcus sp. MH301 prokMSA_id:83566 Synechococcus sp. RS9907 AY172817 prokMSA_id:84053 Synechococcus sp. Oli31 AY172810 prokMSA_id:84144 Cyanobium sp. Bright prokMSA_id:84148 Synechococcus sp. MW74D3 AY224200 prokMSA_id:84700 Synechococcus sp. Minos01-AC6F1 prokMSA_id:84712 Synechococcus sp. CC9605 prokMSA_id:84801 Synechococcus sp. RS9919 AY172829 prokMSA_id:84810 Synechococcus sp. RS9909 prokMSA_id:85023 Synechococcus sp. Max42 AY172805 prokMSA_id:85105 Synechococcus sp. Almo3 prokMSA_id:85112 Synechococcus sp. Dim AY172803 prokMSA_id:85143 Synechococcus sp. RS9911 AY172821 prokMSA_id:85276 Synechococcus sp. WH 8109 prokMSA_id:85406 Synechococcus sp. RS9920 prokMSA_id:85509 Synechococcus sp. RS9901 AY172811 prokMSA_id:85659 Synechococcus sp. RS9915 AY172825 prokMSA_id:85670 Synechococcus sp. RS9914 prokMSA_id:85703 Synechococcus sp. RS9913 prokMSA_id:85806 Synechococcus sp. RS9912 AY172822 prokMSA_id:85960 Synechococcus sp. Eum14 AY172804 prokMSA_id:85989 Synechococcus sp. RS9916 AY172826 prokMSA_id:86023 Synechococcus sp. RS9906 prokMSA_id:86155 Synechococcus sp. RS9903 AY172813 prokMSA_id:86201 Synechococcus sp. Minos02-C2C2 AY172809 prokMSA_id:86476 Synechococcus sp. Minos11 prokMSA_id:86621 Synechococcus sp. RS9908 AY172818 prokMSA_id:86649 Synechococcus sp. WH 8020 prokMSA_id:88136 Prochlorococcus marinus subsp. marinus str. CCMP1375 complet prokMSA_id:89557 Prochlorococcus marinus subsp. marinus str. CCMP1375 section prokMSA_id:91747 clone K2-30-3 AY344431 prokMSA_id:92037 Prochlorococcus marinus subsp. pastoris str. CCMP1378 comple prokMSA_id:92092 Prochlorococcus marinus MED4 complete genome; segment 1/5 BX prokMSA_id:92221 Synechococcus sp. WH 8102 complete genome NC_005070 prokMSA_id:92417 Synechococcus sp. WH8102 complete genome; segment 6/7 BX5696 prokMSA_id:92726 Prochlorococcus marinus str. MIT 9313 complete genome NC_005 prokMSA_id:93043 Prochlorococcus marinus MIT9313 complete genome; segment 6/7 prokMSA_id:93066 Prochlorococcus marinus MIT9313 complete genome; segment 1/7 2.21.1.9.5158 OTU 1 seq prokMSA_id:30150 Pavlova gyrans ; chloroplast chloroplast product 2.21.2 CHLOROPLASTS_AND_CYANELLES 312 seqs 2.21.2.1 PSEUDANABAENA_GROUP 44 seqs 2.21.2.1.5008 OTU 1 seq prokMSA_id:62918 Synechococcus sp. PCC 7502 2.21.2.1.5082 OTU 1 seq prokMSA_id:58469 Limnothrix redekei strain: NIVA CYA 227/1 2.21.2.1.5121 OTU 2 seqs prokMSA_id:3382 Pseudoanabaena biceps PCC 7367 prokMSA_id:28470 Pseudanabaena PCC7367 2.21.2.1.5133 OTU 1 seq prokMSA_id:16700 Pseudanabaena PCC6802 2.21.2.1.5146 OTU 2 seqs prokMSA_id:3386 Phormidium mucicola str. M-221 prokMSA_id:30337 Pseudanabaena PCC7403 2.21.2.1.5145 OTU 21 seqs prokMSA_id:3383 Synechococcus ATCC700245 str. P1 ATCC 700245. AF132774 prokMSA_id:3384 Synechococcus ATCC700246 str. P2 ATCC 700246. AF132775 prokMSA_id:3561 Octopus Spring microbial mat from Yellowstone NP clone B. M6 prokMSA_id:37551 cyanobacterium clone SM1F11 prokMSA_id:42778 cyanobacterium clone SM2D09 prokMSA_id:69841 Synechococcus sp. OH20 AF285241 prokMSA_id:70240 Synechococcus sp. OH31 AF285242 prokMSA_id:70422 Synechococcus sp. OH32 AF285243 prokMSA_id:70809 Synechococcus sp. OH4 AF285240 prokMSA_id:71080 Synechococcus sp. OH30 AF285256 prokMSA_id:71306 Synechococcus sp. OH28 AF285254 prokMSA_id:71581 Synechococcus sp. OH34 AF285258 prokMSA_id:71587 Synechococcus sp. OH2 prokMSA_id:72458 Synechococcus sp. OH29 AF285255 prokMSA_id:73271 Synechococcus sp. OH33 AF285257 prokMSA_id:78933 clone EarCan098 prokMSA_id:80319 cyanobacterium clone O1aA6 AY193064 prokMSA_id:81599 Synechococcus sp. 37 NACy05-A AF505960 prokMSA_id:82209 cyanobacterium NACy05-A AF505962 prokMSA_id:82458 cyanobacterium NACy05-A AF505961 prokMSA_id:87354 cyanobacterium clone SM2A08 AY293403 2.21.2.1.5223 OTU 16 seqs prokMSA_id:3380 "Pseudanabaena galeata" str. CCC OL-75-PS. NONE prokMSA_id:3385 "Pseudanabaena PCC7402" PCC 7402. AF132787 prokMSA_id:3387 "Oscillatoria limnetica" str. MR1 prokMSA_id:20111 Phormidium tenue AB042842 prokMSA_id:25499 Phormidium tenue strain:A AB042971 prokMSA_id:26809 Phormidium tenue prokMSA_id:32638 Phormidium tenue strain:C AB042972 prokMSA_id:33610 Pseudanabaena PCC7408 prokMSA_id:42848 Phormidium tenue AB042838 prokMSA_id:47367 Phormidium tenue strain:S prokMSA_id:49081 Phormidium tenue prokMSA_id:49923 Phormidium sp. E18 AF263339 prokMSA_id:54033 Pseudanabaena PCC6903 prokMSA_id:54183 Oscillatoria sp. UTCC393 prokMSA_id:95607 Limnothrix redekei CCAP 1443/1 ITS1 tRNA-Ile tRNA-Ala and 23 prokMSA_id:96216 Limnothrix sp. MR1 ITS1 tRNA-Ile tRNA-Ala and 23S isolate MR 2.21.2.2 CYANELLE_GROUP 7 seqs 2.21.2.2.4987 OTU 1 seq prokMSA_id:3393 Gloeochaete wittrockiana str. SAG B 46.84 blue green alga -- 2.21.2.2.5097 OTU 4 seqs prokMSA_id:3388 Cyanophora paradoxa colorless flagellate alga -- cyanelle. U prokMSA_id:3389 Cyanophora paradoxa colorless flagellate alga -- cyanelle prokMSA_id:3390 Cyanophora paradoxa colorless flagellate alga -- cyanelle. U prokMSA_id:53530 Cyanophora paradoxa cyanelle complete genome NC_001675 2.21.2.2.5106 OTU 1 seq prokMSA_id:3392 Glaucocystis nostochinearum str. SAG 45.88 blue green alga - 2.21.2.2.5239 OTU 1 seq prokMSA_id:30917 clone PRD01a012B 2.21.2.3 OTHER_CHLOROPLASTS 104 seqs 2.21.2.3.1 SKELETONEMA_SUBGROUP 27 seqs 2.21.2.3.1.4984 OTU 1 seq prokMSA_id:30128 eukaryote OM164 2.21.2.3.1.5037 OTU 1 seq prokMSA_id:30270 stramenopile CLEAR-18 2.21.2.3.1.5045 OTU 1 seq prokMSA_id:30482 diatom clone HTAA8 ; chloroplast chloroplast product 2.21.2.3.1.5060 OTU 20 seqs prokMSA_id:3401 marine snow associated clone agg46 prokMSA_id:3403 Skeletonema pseudocostatum str. CSIRO culture CS-76 centric prokMSA_id:3439 Skeletonema costatum str. UBS-18 Univ. of British Columbia c prokMSA_id:18056 diatom clone HTDD6 ; chloroplast chloroplast product prokMSA_id:26067 diatom clone HT2F1 ; chloroplast chloroplast product AF41897 prokMSA_id:30625 diatom clone HT2A3 ; chloroplast chloroplast product AF41897 prokMSA_id:42337 diatom clone HTB2 ; chloroplast chloroplast product prokMSA_id:44942 diatom clone HT2B7 ; chloroplast chloroplast product prokMSA_id:48163 diatom clone HT2A8 ; chloroplast chloroplast product AF41897 prokMSA_id:48825 Odontella sinensis chloroplast complete genome NC_001713 prokMSA_id:63316 clone RCP2-13 prokMSA_id:63815 plastid clone ML310M-8 AF454328 prokMSA_id:64737 Haslea wawrikae ; chloroplast chloroplast product prokMSA_id:64739 Haslea pseudostrearia ; chloroplast chloroplast product AF51 prokMSA_id:64743 Haslea ostrearia ; chloroplast chloroplast product AF514852 prokMSA_id:64745 Haslea sp. ; chloroplast chloroplast product AF514851 prokMSA_id:64746 Pleurosigma intermedium ; chloroplast chloroplast product AF prokMSA_id:69021 Odontella sinensis complete chloroplast genome Z67753 prokMSA_id:77079 diatom clone HC-8 ; chloroplast chloroplast product prokMSA_id:95798 clone 53 AJ538357 2.21.2.3.1.5120 OTU 1 seq prokMSA_id:3438 clone LD27 2.21.2.3.1.5221 OTU 1 seq prokMSA_id:3400 clone OM20 2.21.2.3.1.5240 OTU 1 seq prokMSA_id:3447 Olisthodiscus luteus stramenopile -- chloroplast 2.21.2.3.1.5241 OTU 1 seq prokMSA_id:3448 Pylaiella littoralis brown alga -- chloroplast 2.21.2.3.2 EUGLENA_SUBGROUP 23 seqs 2.21.2.3.2.4967 OTU 1 seq prokMSA_id:83959 eukaryote clone TLM14 2.21.2.3.2.4973 OTU 1 seq prokMSA_id:3454 Astasia longa str. CCAP 1204-17a colorless euglenophycean al 2.21.2.3.2.4971 OTU 1 seq prokMSA_id:3450 Chlorarachnion reptans CCMP 238 amoeboflagellate -- chloropl 2.21.2.3.2.4977 OTU 1 seq prokMSA_id:40682 Colacium vesiculosum ; chloroplast chloroplast product 2.21.2.3.2.4974 OTU 1 seq prokMSA_id:3452 Prototheca zopfii str. SAG 263-1a green alga -- chloroplast 2.21.2.3.2.4979 OTU 1 seq prokMSA_id:38279 Phacus orbicularis ; chloroplast chloroplast product 2.21.2.3.2.5019 OTU 2 seqs prokMSA_id:3451 Chlorarachnion sp. CCMP 240 amoeboflagellate -- chloroplast prokMSA_id:70779 Chlorarachnion CCMP240 chloroplast chloroplast complete U214 2.21.2.3.2.5033 OTU 1 seq prokMSA_id:46777 eukaryote OM81 2.21.2.3.2.5043 OTU 1 seq prokMSA_id:40174 Strombomonas costata ; chloroplast chloroplast product 2.21.2.3.2.5053 OTU 1 seq prokMSA_id:34641 Phacus pleuronectes ; chloroplast chloroplast product 2.21.2.3.2.5068 OTU 1 seq prokMSA_id:49499 Crater Lake CL120-102 2.21.2.3.2.5096 OTU 1 seq prokMSA_id:3456 Euglena gracilis euglenophycean alga -- chloroplast 2.21.2.3.2.5102 OTU 1 seq prokMSA_id:77406 Euglena geniculata SAG 1224-4F ; chloroplast chloroplast pro 2.21.2.3.2.5130 OTU 1 seq prokMSA_id:49945 eukaryote clone SM2B11 ; plastid plastid product 2.21.2.3.2.5171 OTU 1 seq prokMSA_id:26708 Trachelomonas volvocina ; chloroplast chloroplast product 2.21.2.3.2.5206 OTU 1 seq prokMSA_id:63233 clone FW124 2.21.2.3.2.5225 OTU 1 seq prokMSA_id:33162 Euglena polymorpha ; chloroplast chloroplast product 2.21.2.3.2.5224 OTU 1 seq prokMSA_id:16320 Euglena stellata ; chloroplast chloroplast product 2.21.2.3.2.5231 OTU 1 seq prokMSA_id:44394 rhodophyte PRD01a010B 2.21.2.3.2.5232 OTU 1 seq prokMSA_id:24874 Euglena tristella ; chloroplast chloroplast product 2.21.2.3.2.5242 OTU 2 seqs prokMSA_id:3449 Chlorarachnion sp. CCMP 242 amoeboflagellate -- chloroplast prokMSA_id:72174 Chlorarachnion CCMP242 chloroplast chloroplast complete U214 2.21.2.3.3 OCHROSPHAERA_SUBGROUP 18 seqs 2.21.2.3.3.5039 OTU 1 seq prokMSA_id:47593 eukaryote OM270 2.21.2.3.3.5100 OTU 1 seq prokMSA_id:17082 Isochrysidales sp. SIC.42345 2.21.2.3.3.5147 OTU 16 seqs prokMSA_id:3462 clone OM21 prokMSA_id:3464 str. 2-100 C10. Z77491 prokMSA_id:3465 Ochrosphaera sp. str. 181 haptophyte -- chloroplast prokMSA_id:3466 Ochrosphaera neapolitana CCMP 593 haptophyte -- chloroplast prokMSA_id:3467 Isochrysis sp. flagellate alga -- chloroplast prokMSA_id:3468 Emiliania huxleyi str. Plymouth Marine Laborator PML 92D prokMSA_id:3469 str. 1-140 C10. Z77353 prokMSA_id:22013 haptophyte OM125 prokMSA_id:23395 Crater Lake CL120-71 prokMSA_id:34744 clone 33-PA67B00 AF469400 prokMSA_id:35915 haptophyte OM153 prokMSA_id:40411 Crater Lake CL120-48 AF316699 prokMSA_id:48463 Chrysochromulina polylepis ; chloroplast chloroplast product prokMSA_id:48657 Crater Lake CL120-75 prokMSA_id:72546 Ochrosphaera neapolitana plastid tRNAIle tRNAAla and 23S gen prokMSA_id:83678 Morganella morganii strain:JCM1672 AB089243 2.21.2.3.4 PYRENOMONAS_SUBGROUP 29 seqs 2.21.2.3.4.4970 OTU 1 seq prokMSA_id:69457 Chilomonas paramecium leucoplast 2.21.2.3.4.4994 OTU 3 seqs prokMSA_id:52865 Porphyra leucosticta ; plastid plastid product prokMSA_id:53015 Porphyra purpurea chloroplast complete genome NC_000925 prokMSA_id:69121 Porphyra purpurea chloroplast complete genome U38804 2.21.2.3.4.5007 OTU 1 seq prokMSA_id:85239 eukaryote clone TLM13/TLMdgge20 2.21.2.3.4.5041 OTU 1 seq prokMSA_id:27542 Flintiella sanguinaria ; plastid plastid product 2.21.2.3.4.5139 OTU 1 seq prokMSA_id:29775 Compsopogon coeruleus ; plastid plastid product 2.21.2.3.4.5166 OTU 18 seqs prokMSA_id:3470 Pyrenomonas salina cryptomonad -- chloroplast prokMSA_id:3472 Cryptomonas phi str. F 2-flagellae cryptomonad -- chloroplas prokMSA_id:25107 cryptomonad OM283 prokMSA_id:51823 Guillardia theta chloroplast complete genome NC_000926 prokMSA_id:60252 Proteomonas sulcata plastid prokMSA_id:60253 Hemiselmis virescens plastid prokMSA_id:60255 Chroomonas placoidea plastid prokMSA_id:69145 Geminigera cryophila plastid prokMSA_id:69194 Dinophysis acuminata plastid AB073114 prokMSA_id:69410 Dinophysis norvegica plastid AB073116 prokMSA_id:69432 Guillardia theta complete plastid genome AF041468 prokMSA_id:69476 alga isolate WL11-15 ; chloroplast chloroplast product AF497 prokMSA_id:71043 Dinophysis fortii plastid AB073115 prokMSA_id:72132 algal chloroplast clone DGGE band CIBAC-9 AJ239996 prokMSA_id:73189 alga isolate WL11-17 ; chloroplast chloroplast product AF497 prokMSA_id:80010 Dinophysis acuta strain acutNP09 ; plastid plastid product A prokMSA_id:80089 Dinophysis norvegica strain norvCC04 ; plastid plastid produ prokMSA_id:80457 Dinophysis acuminata strain acumGC08 ; plastid plastid produ 2.21.2.3.4.5170 OTU 3 seqs prokMSA_id:16609 Stylonema alsidii ; plastid plastid product prokMSA_id:47228 Chroodactylon ramosum ; plastid plastid product prokMSA_id:47632 Rhodosorus marinus ; plastid plastid product 2.21.2.3.4.5235 OTU 1 seq prokMSA_id:56317 Cryptomonas ovata plastid 2.21.2.3.5 PORPHYRA_SUBGROUP 5 seqs 2.21.2.3.5.5109 OTU 1 seq prokMSA_id:3476 Glaucosphaera vacuolata str. SAG B 13.82 blue green alga -- 2.21.2.3.5.5108 OTU 1 seq prokMSA_id:3474 Chondrus crispus red alga -- chloroplast 2.21.2.3.5.5107 OTU 1 seq prokMSA_id:3473 Antithamnion sp. red alga -- chloroplast 2.21.2.3.5.5135 OTU 1 seq prokMSA_id:3475 Palmaria palmata edible? red alga -- chloroplast 2.21.2.3.5.5154 OTU 1 seq prokMSA_id:19992 Bangia fuscopurpurea ; plastid plastid product 2.21.2.3.6 CYANIDIUM_SUBGROUP 2 seqs 2.21.2.3.6.5112 OTU 1 seq prokMSA_id:3479 Cyanidium caldarium str. 14-1-1 red alga -- chloroplast 2.21.2.3.6.5176 OTU 1 seq prokMSA_id:47684 Rhodophyte NZ4 ; plastid plastid product 2.21.2.4 GREEN_ALGAE_CHLOROPLASTS 91 seqs 2.21.2.4.4968 OTU 1 seq prokMSA_id:3487 Chlamydomonas pallidostigmatica green alga -- chloroplast 2.21.2.4.4975 OTU 1 seq prokMSA_id:3490 Nanochlorum eucaryotum green coccoidal alga -- chloroplast 2.21.2.4.4980 OTU 1 seq prokMSA_id:3492 clone HstpL33 2.21.2.4.4982 OTU 1 seq prokMSA_id:3493 Chlamydomonas parkeae str. NIES-440 green alga -- chloroplas 2.21.2.4.4986 OTU 2 seqs prokMSA_id:3484 Chlamydomonas reinhardtii green alga -- chloroplast prokMSA_id:79762 TPA: Chlamydomonas reinhardtii chloroplast complete genome 2.21.2.4.4983 OTU 1 seq prokMSA_id:3494 Chlorella mirabilis str. 748-I green alga -- chloroplast 2.21.2.4.4990 OTU 2 seqs prokMSA_id:3497 Chlorella saccharophila subsp. saccharophila str. 211-1d gre prokMSA_id:71886 Chlorella saccharophila strain 211-1d chloroplast D11349 2.21.2.4.5006 OTU 58 seqs prokMSA_id:3481 Chlorella kessleri str. 211-11g green alga -- chloroplast prokMSA_id:3483 Chlorella sorokiniana str. 211-8k green alga -- chloroplast prokMSA_id:3488 Chlorella kessleri str. 211-11h green alga -- chloroplast prokMSA_id:3489 Chlorella vulgaris green alga -- chloroplast prokMSA_id:3499 Chlorella vulgaris str. 211-11b green alga -- chloroplast prokMSA_id:16639 Chlorella sp. CS12 region isolate 21 AJ387754 prokMSA_id:17252 moss plastid clone moss33 ; chloroplast chloroplast product prokMSA_id:17254 Chlorella vulgaris ; chloroplast chloroplast product AF35025 prokMSA_id:18215 soil crust cyanobacterium clone moss32 AF428503 prokMSA_id:18695 Plastid transformation vector pGS31A ; aminoglycoside 3'-ade prokMSA_id:20187 Putative agent of rhinosporidiosis AJ409116 prokMSA_id:22442 moss plastid clone moss35 ; chloroplast chloroplast product prokMSA_id:23026 Phaseolus vulgaris clone 8360 AJ007448 prokMSA_id:26398 soil C051 AF128638 prokMSA_id:26787 Chlorella vulgaris CS12 region strain IAM C-208 AJ387750 prokMSA_id:26834 moss plastid clone moss22 ; chloroplast chloroplast product prokMSA_id:32970 Chlorella pyrenoidosa CS12 region strain IAM C-210 AJ387756 prokMSA_id:34404 Chlorella vulgaris chloroplast strain CCAP 211/19 AJ242750 prokMSA_id:36473 Chlorella sp. CS12 region isolate I AJ387755 prokMSA_id:36543 Magnolia x soulangeana ; chloroplast chloroplast product AF2 prokMSA_id:36710 Chlorella vulgaris ; chloroplast chloroplast product AF35026 prokMSA_id:38024 Crater Lake CL120-109 prokMSA_id:38828 Chlorella vulgaris C-27 chloroplast complete AB001684 prokMSA_id:39313 Chlorella vulgaris chloroplast strain NIES 227 AJ242754 prokMSA_id:39824 Koliella sempervirens ; chloroplast chloroplast product AF27 prokMSA_id:39850 Medicago sativa AF419246 prokMSA_id:40905 Chlorella emersonii chloroplast strain NIES 690 AJ242751 prokMSA_id:41108 Phaseolus vulgaris clone 8206 AJ007447 prokMSA_id:41814 Nitella flexilis ; chloroplast chloroplast product AF278748 prokMSA_id:43787 Koliella spiculiformis ; chloroplast chloroplast product AF2 prokMSA_id:45393 Chlorella sp. CS12 region isolate V AJ387757 prokMSA_id:45563 Alnus glutinosa chloroplast encoding chloroplast U46209 prokMSA_id:47517 Solanum tuberosum leukoplast clone RC-III-13 AJ252712 prokMSA_id:49481 Chlorella vulgaris chloroplast complete genome NC_001865 prokMSA_id:51755 A.glutinosa chloroplast X95278 prokMSA_id:52742 Chlorella sp. CS12 region isolate 216 AJ387753 prokMSA_id:52757 Chlorella vulgaris chloroplast strain IAM C-27 AJ242753 prokMSA_id:54861 moss plastid clone moss23 ; chloroplast chloroplast product prokMSA_id:56887 clone Sai4P3-16 AJ518707 prokMSA_id:61291 embryophyte plastid clone NOS7.166WL ; chloroplast chloropla prokMSA_id:61292 embryophyte plastid clone SMW4.10WL ; chloroplast chloroplas prokMSA_id:61293 embryophyte plastid clone NOW2.115WL ; chloroplast chloropla prokMSA_id:64444 embryophyte clone BCM1-32B ; plastid plastid product prokMSA_id:69239 eukaryote FL10D12 ; plastid plastid product AY145639 prokMSA_id:70155 Chlorella vulgaris strain 211-1e chloroplast D11347 prokMSA_id:70573 Calothrix parietina clone 144-1B + 159-4 AF334696 prokMSA_id:71605 Cuscuta subinclusa chloroplast tRNA-ValGAC and AJ278625 prokMSA_id:73853 Calothrix parietina clone 144-1A + 159-4 AF334695 prokMSA_id:83443 Raphidonema nivale strain IAM C-166 ; chloroplast chloroplas prokMSA_id:83538 Zygnema sp. KA-2002 ; chloroplast chloroplast product AF4977 prokMSA_id:83946 Chaetosphaeridium globosum ; chloroplast chloroplast product prokMSA_id:84762 Nitellopsis obtusa ; chloroplast chloroplast product AF49779 prokMSA_id:85205 Koliella planctonica ; chloroplast chloroplast product AF497 prokMSA_id:85873 Raphidonema nivale strain CCAP ; chloroplast chloroplast pro prokMSA_id:86193 Chara strigosa ; chloroplast chloroplast product AF497791 prokMSA_id:89527 marine eukaryote isolate ODP1176A22X_6_B ; plastid plastid p prokMSA_id:89881 Calothrix sp. KU004 AB097922 prokMSA_id:98871 clone DGGE band 34 AJ583813 2.21.2.4.5022 OTU 1 seq prokMSA_id:63818 plastid clone ML310M-37 2.21.2.4.5055 OTU 2 seqs prokMSA_id:32850 Prototheca wickerhamii 5.0 kb plastid fragment of genecluste prokMSA_id:48130 Prototheca wickerhamii chloroplast genome 2.21.2.4.5058 OTU 1 seq prokMSA_id:17005 Crater Lake CL120-14 2.21.2.4.5092 OTU 2 seqs prokMSA_id:26799 Codium fragile chloroplast encoding chloroplast prokMSA_id:97540 Codium fragile ; chloroplast chloroplast product AY389515 2.21.2.4.5095 OTU 3 seqs prokMSA_id:31996 Chlamydomonas dysosmos rrn16 ; chloroplast chloroplast produ prokMSA_id:47887 Chlamydomonas humicola rrn16 ; chloroplast chloroplast produ prokMSA_id:49287 Chlamydomonas applanata ; chloroplast chloroplast product 2.21.2.4.5098 OTU 1 seq prokMSA_id:20563 Euglena tripteris ; chloroplast chloroplast product 2.21.2.4.5111 OTU 2 seqs prokMSA_id:3500 Chlorella saccharophila subsp. ellipsoidea str. 3.80 green a prokMSA_id:70500 Chlorella saccharophila strain 3.80 chloroplast D11348 2.21.2.4.5110 OTU 2 seqs prokMSA_id:3485 Chlamydomonas eugametos str. UTEX 9 mt+ green alga -- prokMSA_id:3498 Chlamydomonas moewusii str. UTEX 97 mt+ green alga -- 2.21.2.4.5119 OTU 1 seq prokMSA_id:18107 Prototheca wickerhamii ; leucoplast leucoplast product 2.21.2.4.5124 OTU 1 seq prokMSA_id:3486 Yamagishiella unicocca str. X-441 green alga -- chloroplast 2.21.2.4.5123 OTU 1 seq prokMSA_id:31682 Lepocinclis fusiformis ; chloroplast chloroplast product 2.21.2.4.5137 OTU 2 seqs prokMSA_id:42846 Polytoma oviforme rrn16 ; chloroplast chloroplast product AF prokMSA_id:48283 Polytoma oviforme ; leucoplast leucoplast product 2.21.2.4.5140 OTU 1 seq prokMSA_id:3495 Chlorella protothecoides str. 211-7a green alga -- 2.21.2.4.5155 OTU 1 seq prokMSA_id:3480 Gonium pectorale str. NIES-468 green alga -- chloroplast 2.21.2.4.5156 OTU 1 seq prokMSA_id:3482 Chlorella ellipsoidea str. IAM-C87 green alga -- chloroplast 2.21.2.4.5160 OTU 1 seq prokMSA_id:3491 Pyramimonas parkeae str. NIES 254 green alga -- chloroplast 2.21.2.4.5179 OTU 1 seq prokMSA_id:38948 Phacus skujai ; chloroplast chloroplast product 2.21.2.5 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS 66 seqs 2.21.2.5.4966 OTU 1 seq prokMSA_id:34845 Adiantum pedatum ; chloroplast chloroplast product 2.21.2.5.4976 OTU 1 seq prokMSA_id:42014 Calypogeia muelleriana ; chloroplast chloroplast product 2.21.2.5.5000 OTU 1 seq prokMSA_id:72055 Mitrastema yamamotoi chloroplast 2.21.2.5.5018 OTU 2 seqs prokMSA_id:3509 Juniperus virginiana gymnosperm -- chloroplast prokMSA_id:19534 eukaryote clone SM1B08 ; plastid plastid product 2.21.2.5.5026 OTU 2 seqs prokMSA_id:3530 Ephedra trifurca gymnosperm -- chloroplast prokMSA_id:36243 Gnetum leyboldii ; chloroplast chloroplast product 2.21.2.5.5040 OTU 32 seqs prokMSA_id:3506 Angiopteris evecta eusporangiate fern -- chloroplast prokMSA_id:3511 Cibotium glaucum Hawaiian tree fern -- chloroplast prokMSA_id:3512 Doodia maxima leptosporangiate fern -- chloroplast prokMSA_id:3514 Nicotiana tabacum common tobacco; tobacco; American tobacco prokMSA_id:3516 Pinus thunbergiana Japanese black pine; green pine -- prokMSA_id:3517 Sphagnum palustre bryophyte -- chloroplast prokMSA_id:3521 Alnus incana hazel alder -- chloroplast prokMSA_id:3531 Marchantia polymorpha liverwort -- chloroplast prokMSA_id:3532 Nicotiana plumbaginifolia str. wild curled-leaved tobacco; prokMSA_id:3539 Brassica napus forage rape; kale -- chloroplast prokMSA_id:3542 Nicotiana plumbaginifolia str. wild curled-leaved tobacco; prokMSA_id:3546 Daucus carota carrot -- chloroplast prokMSA_id:3552 Ricinis communis castor bean -- chloroplast prokMSA_id:3554 Osmunda cinnamomea str. var. fokiensis cinnamon fern -- prokMSA_id:3559 Cuscuta reflexa dodder plant -- chloroplast prokMSA_id:18362 Cuscuta campestris chloroplast prokMSA_id:21502 Cuscuta platyloba chloroplast prokMSA_id:32016 Megaceros aenigmaticus ; chloroplast chloroplast product prokMSA_id:35330 Cuscuta europaea chloroplast prokMSA_id:40521 Polytrichum commune ; chloroplast chloroplast product prokMSA_id:41462 Phaeoceros laevis ; chloroplast chloroplast product prokMSA_id:48267 Carica papaya chloroplast chloroplast prokMSA_id:48948 Ginkgo biloba ; chloroplast chloroplast product prokMSA_id:52573 Nymphaea tuberosa ; chloroplast chloroplast product prokMSA_id:53526 Orobanche minor chloroplast trnVGAC trnIGAU pseudogene trnAU prokMSA_id:62969 angiosperm clone T5-20 ; chloroplast chloroplast product prokMSA_id:64370 Putative agent of rhinosporidiosis prokMSA_id:69031 Solanum nigrum chloroplast tRNA-Ala tRNA-Ile tRNA-Val rps12 prokMSA_id:69292 Cuscuta odorata chloroplast tRNA-ValGAC and prokMSA_id:72159 Cuscuta gronovii chloroplast tRNA-ValGAC and prokMSA_id:74351 Cuscuta reflexa chloroplast tRNA-ValGAC and prokMSA_id:84627 Lycopersicon esculentum tRNA-Val complete ; complete ; and t 2.21.2.5.5062 OTU 2 seqs prokMSA_id:83461 Coleochaete pulvinata ; chloroplast chloroplast product prokMSA_id:86374 Coleochaete nitellarum ; chloroplast chloroplast product 2.21.2.5.5099 OTU 1 seq prokMSA_id:3534 Selaginella apoda fern allies -- chloroplast 2.21.2.5.5101 OTU 1 seq prokMSA_id:3536 Spirogyra maxima charophyte alga -- chloroplast 2.21.2.5.5105 OTU 1 seq prokMSA_id:3538 Klebsormidium flaccidum charophyte alga -- chloroplast 2.21.2.5.5122 OTU 1 seq prokMSA_id:3540 Chara sp. stonewort green alga -- chloroplast 2.21.2.5.5136 OTU 1 seq prokMSA_id:35074 Cynomorium coccineum chloroplast 2.21.2.5.5181 OTU 1 seq prokMSA_id:29047 Cytinus ruber chloroplast chloroplast 2.21.2.5.5183 OTU 2 seqs prokMSA_id:3504 Pisum sativum str. cr. Progress No.9 pea; garden pea -- prokMSA_id:3529 Pisum sativum pea; garden pea -- chloroplast 2.21.2.5.5182 OTU 14 seqs prokMSA_id:3501 Epifagus virginiana beechdrops -- chloroplast prokMSA_id:3505 Oryza sativa str. cv. Nipponbare rice -- chloroplast prokMSA_id:3518 Psilotum nudum fern allies -- chloroplast prokMSA_id:3525 Tmesipteris oblanceolata fern allies -- chloroplast prokMSA_id:3526 Lycopodium digitatum fern allies -- chloroplast prokMSA_id:3527 Equisetum arvense fern allies -- chloroplast prokMSA_id:3544 Conopholis americana flowering plant -- chloroplast prokMSA_id:3545 Isoetes melanopoda fern allies -- chloroplast prokMSA_id:3549 Ophioglossum engelmannii eusporangiate fern -- chloroplast prokMSA_id:3550 Lygodium japonicum leptosporangiate fern -- chloroplast prokMSA_id:18059 Plastid transformation vector pMSK49 plastid targeting regio prokMSA_id:46607 Oryza sativa japonica cultivar-group plastid complete genome prokMSA_id:52836 Triticum aestivum L. chloroplast prokMSA_id:74494 Huperzia lucidula ; chloroplast chloroplast product 2.21.2.5.5192 OTU 1 seq prokMSA_id:39969 Cycas revoluta ; chloroplast chloroplast product 2.21.2.5.5203 OTU 1 seq prokMSA_id:45967 Bdallophyton americanum chloroplast 2.21.2.5.5227 OTU 1 seq prokMSA_id:3508 Closterium ehrenbergii str. NIES-228 green alga -- chloropla 2.21.4 GLOEOBACTER_GROUP 6 seqs 2.21.4.4997 OTU 5 seqs prokMSA_id:3563 Gloeobacter violaceus PCC 7421 prokMSA_id:3564 Gloeobacter violaceus PCC 7421 prokMSA_id:3565 Gloeobacter PCC8105 PCC 8105 prokMSA_id:94836 Gloeobacter violaceus PCC 7421 complete genome section 6/16 prokMSA_id:97840 Gloeobacter violaceus complete genome NC_005125 2.21.4.5143 OTU 1 seq prokMSA_id:19077 soil PBS-II-1 2.21.5 ENVIRONMENTAL_CLONE_TM7_GROUP 11 seqs 2.21.5.4981 OTU 1 seq prokMSA_id:3566 clone TM7 2.21.5.4988 OTU 1 seq prokMSA_id:3568 clone M13 2.21.5.5014 OTU 1 seq prokMSA_id:16748 TM7LH15 2.21.5.5061 OTU 3 seqs prokMSA_id:17120 NoosaAW13 prokMSA_id:46000 NoosaAW67 prokMSA_id:49063 NoosaAW56 2.21.5.5177 OTU 4 seqs prokMSA_id:21216 gold mine D25 prokMSA_id:40620 gold mine D20 prokMSA_id:44180 gold mine D51 prokMSA_id:85251 clone D140 2.21.5.5228 OTU 1 seq prokMSA_id:37526 GC1 2.25 FIBROBACTER_AND_ACIDOBACTERIUM 209 seqs 2.25.1 FIBROBACTER_SUBDIVISION 76 seqs 2.25.1.1 FIBROBACTER_GROUP 4 seqs 2.25.1.1.6384 OTU 1 seq prokMSA_id:3581 Fibrobacter sp 2.25.1.1.6381 OTU 1 seq prokMSA_id:3577 clone 12-5 2.25.1.1.6389 OTU 1 seq prokMSA_id:3591 Fibrobacter sp 2.25.1.1.6422 OTU 1 seq prokMSA_id:63459 Fibrobacter succinogenes strain HM2 2.25.1.2 ENVIRONMENTAL_CLONE_OCS307_GROUP 72 seqs 2.25.1.2.6327 OTU 1 seq prokMSA_id:38224 clone Car89fb 2.25.1.2.6328 OTU 4 seqs prokMSA_id:3641 clone BOL-162 prokMSA_id:3643 clone BOL-116 prokMSA_id:3644 clone BOL-27 prokMSA_id:3646 clone BOL-06 2.25.1.2.6331 OTU 2 seqs prokMSA_id:3620 clone CA1-01 prokMSA_id:3627 clone BMS1-37 2.25.1.2.6336 OTU 1 seq prokMSA_id:22653 delta clone Car176f 2.25.1.2.6344 OTU 1 seq prokMSA_id:79412 clone ZA3648c 2.25.1.2.6346 OTU 1 seq prokMSA_id:22758 MERTZ_21CM_187 2.25.1.2.6349 OTU 3 seqs prokMSA_id:42960 marine ARCT1-7 prokMSA_id:64945 Fibrobacter group CS4K-103 prokMSA_id:64952 Fibrobacter group CS4K-102 2.25.1.2.6352 OTU 1 seq prokMSA_id:35861 delta Arctic96B-7 2.25.1.2.6369 OTU 1 seq prokMSA_id:3628 clone BMS1-28 2.25.1.2.6373 OTU 1 seq prokMSA_id:3633 clone LL-19 2.25.1.2.6370 OTU 1 seq prokMSA_id:3629 clone BMS1-07 2.25.1.2.6372 OTU 1 seq prokMSA_id:3630 clone WCHB1-01 2.25.1.2.6376 OTU 1 seq prokMSA_id:3640 clone CA1-03 2.25.1.2.6379 OTU 1 seq prokMSA_id:3647 clone BOL-05 2.25.1.2.6377 OTU 1 seq prokMSA_id:3642 clone BOL-126 2.25.1.2.6383 OTU 1 seq prokMSA_id:3653 clone pB1-121 2.25.1.2.6385 OTU 1 seq prokMSA_id:3655 clone NH16-16 2.25.1.2.6392 OTU 2 seqs prokMSA_id:3602 clone CA1-183 prokMSA_id:3605 clone CA1-02 2.25.1.2.6393 OTU 1 seq prokMSA_id:3594 clone WCHB1-15 2.25.1.2.6397 OTU 4 seqs prokMSA_id:3601 clone LL-02 prokMSA_id:3603 clone CA1-06 prokMSA_id:3607 clone BOL-173. AF172899 prokMSA_id:3612 clone BMS1-64. AF172880 2.25.1.2.6395 OTU 3 seqs prokMSA_id:3631 clone LL-22 prokMSA_id:3632 clone LL-20 prokMSA_id:3634 clone LL-01 2.25.1.2.6399 OTU 3 seqs prokMSA_id:3637 clone CA1-114 prokMSA_id:3645 clone BOL-15 prokMSA_id:3648 clone BMS1-76. AF172881 2.25.1.2.6406 OTU 5 seqs prokMSA_id:3635 clone CA1-191 prokMSA_id:3636 clone CA1-115 prokMSA_id:3638 clone CA1-22 prokMSA_id:3639 clone CA1-17 prokMSA_id:18930 Toluene-degrading methanogenic consortium Eub 3 2.25.1.2.6408 OTU 2 seqs prokMSA_id:64895 Fibrobacter group pT-426 prokMSA_id:79575 clone ZA3312c 2.25.1.2.6411 OTU 1 seq prokMSA_id:48719 clone 33-PA26B99 2.25.1.2.6430 OTU 2 seqs prokMSA_id:74962 clone BLIB-95 prokMSA_id:75343 clone ALIB-11 2.25.1.2.6433 OTU 1 seq prokMSA_id:23348 delta Arctic95A-3 2.25.1.2.6436 OTU 1 seq prokMSA_id:3608 clone BOL-134 2.25.1.2.6437 OTU 1 seq prokMSA_id:3609 clone BOL-22 2.25.1.2.6442 OTU 1 seq prokMSA_id:3619 clone BOL-130 2.25.1.2.6441 OTU 1 seq prokMSA_id:3618 clone WCHB1-06 2.25.1.2.6447 OTU 1 seq prokMSA_id:3621 clone BOL-195 2.25.1.2.6445 OTU 4 seqs prokMSA_id:3622 clone BOL-177 prokMSA_id:3623 clone BOL-118 prokMSA_id:3624 clone BOL-26 prokMSA_id:3626 clone BOL-01 2.25.1.2.6454 OTU 6 seqs prokMSA_id:3654 clone SAR 406 prokMSA_id:3656 clone OCS146. AF001653 prokMSA_id:3657 clone OCS 307 prokMSA_id:29916 NH16-12 prokMSA_id:60631 Fibrobacter/Acidobacteria group clone AEGEAN_225 prokMSA_id:68979 MB13C05 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.25.1.2.6456 OTU 5 seqs prokMSA_id:23031 MERTZ_21CM_158 prokMSA_id:30415 MERTZ_2CM_63 prokMSA_id:42369 MERTZ_2CM_351 prokMSA_id:44566 MERTZ_2CM_321 prokMSA_id:59831 clone OB3_30 2.25.1.2.6457 OTU 5 seqs prokMSA_id:3599 clone LL-27 prokMSA_id:3606 clone BOL-176 prokMSA_id:3611 clone BOL-04 prokMSA_id:3616 clone BMS1-11 prokMSA_id:3625 clone BOL-02 2.25.3 ACIDOBACTERIUM_SUBDIVISION 133 seqs 2.25.3.1 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_III 35 seqs 2.25.3.1.6329 OTU 1 seq prokMSA_id:50491 Acidobacterium group YNPRH5A 2.25.3.1.6337 OTU 1 seq prokMSA_id:63244 clone FW14 2.25.3.1.6339 OTU 1 seq prokMSA_id:14398 DA040 2.25.3.1.6353 OTU 1 seq prokMSA_id:58081 Ellin371 2.25.3.1.6354 OTU 1 seq prokMSA_id:79283 sequences clone: IheB3-42 2.25.3.1.6357 OTU 1 seq prokMSA_id:60816 Acidobacteria/Holophaga group clone Cart-N4 2.25.3.1.6364 OTU 3 seqs prokMSA_id:63235 clone FW3 prokMSA_id:69911 Ellin342 prokMSA_id:78832 Holophaga sp. clone JG30-KF-C5 2.25.3.1.6360 OTU 1 seq prokMSA_id:63238 clone FW112 2.25.3.1.6367 OTU 3 seqs prokMSA_id:62412 Acidobacterium group clone FTL227 AF529104 prokMSA_id:63237 clone FW120 prokMSA_id:76339 Holophaga sp. clone JG37-AG-74 2.25.3.1.6375 OTU 1 seq prokMSA_id:16602 WD205 clone WD205 2.25.3.1.6380 OTU 1 seq prokMSA_id:40302 #0319-7B4 2.25.3.1.6386 OTU 2 seqs prokMSA_id:26745 WD254 clone WD254 prokMSA_id:31570 WD292 clone WD292 2.25.3.1.6388 OTU 1 seq prokMSA_id:3663 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.1.6387 OTU 1 seq prokMSA_id:3660 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.1.6394 OTU 1 seq prokMSA_id:3668 unnamed organism 2.25.3.1.6390 OTU 1 seq prokMSA_id:3667 clone C002 2.25.3.1.6396 OTU 1 seq prokMSA_id:3669 unnamed organism 2.25.3.1.6401 OTU 1 seq prokMSA_id:75757 Holophaga sp. clone JG37-AG-109 2.25.3.1.6400 OTU 1 seq prokMSA_id:32551 Agricultural soil clone SC-I-77 2.25.3.1.6415 OTU 1 seq prokMSA_id:76572 Holophaga sp. clone JG37-AG-39 2.25.3.1.6420 OTU 1 seq prokMSA_id:60572 clone B90 2.25.3.1.6426 OTU 1 seq prokMSA_id:60585 clone B11 2.25.3.1.6425 OTU 1 seq prokMSA_id:60581 clone B27 2.25.3.1.6429 OTU 1 seq prokMSA_id:47645 SHA-18 2.25.3.1.6435 OTU 1 seq prokMSA_id:3671 clone RB38 2.25.3.1.6434 OTU 1 seq prokMSA_id:3670 clone RB29 2.25.3.1.6439 OTU 1 seq prokMSA_id:3679 clone CLEAR-4 2.25.3.1.6438 OTU 1 seq prokMSA_id:3677 clone SJA-149 2.25.3.1.6444 OTU 1 seq prokMSA_id:3684 clone OPB3 2.25.3.1.6450 OTU 1 seq prokMSA_id:60599 clone G10 2.25.3.2 ENVIRONMENTAL_RB_CLONES_GROUP 21 seqs 2.25.3.2.6338 OTU 8 seqs prokMSA_id:3693 unnamed organism prokMSA_id:3694 unnamed organism prokMSA_id:65811 soil clone S088 prokMSA_id:65831 soil clone S0119 prokMSA_id:65838 soil clone S0109 prokMSA_id:65845 soil clone S061 prokMSA_id:65847 soil clone S055 prokMSA_id:65855 soil clone S032 2.25.3.2.6348 OTU 1 seq prokMSA_id:3692 clone RB41 2.25.3.2.6363 OTU 5 seqs prokMSA_id:3686 clone 32-11 prokMSA_id:21414 species clone 32-19 prokMSA_id:24596 species clone RB112 prokMSA_id:86371 Acidobacteria clone BAC-220H AY214900 prokMSA_id:88510 soil clone DS-111 AY289367 2.25.3.2.6431 OTU 1 seq prokMSA_id:74836 clone LRS13 2.25.3.2.6451 OTU 1 seq prokMSA_id:3690 unnamed organism 2.25.3.2.6448 OTU 1 seq prokMSA_id:3687 unnamed organism 2.25.3.2.6449 OTU 1 seq prokMSA_id:3689 unnamed organism 2.25.3.2.6452 OTU 1 seq prokMSA_id:3695 unnamed organism 2.25.3.2.6453 OTU 1 seq prokMSA_id:3696 clone GFP1 2.25.3.2.6455 OTU 1 seq prokMSA_id:3697 clone RB30 2.25.3.4 ENVIRONMENTAL_CLONE_MC22_GROUP 2 seqs 2.25.3.4.6371 OTU 1 seq prokMSA_id:3700 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.4.6407 OTU 1 seq prokMSA_id:84133 soil clone Tc120-F03 2.25.3.6 ACBT.CAPSULATUM_GROUP 75 seqs 2.25.3.6.6335 OTU 1 seq prokMSA_id:63241 clone FW45 2.25.3.6.6343 OTU 1 seq prokMSA_id:75632 Holophaga sp. clone JG37-AG-116 2.25.3.6.6345 OTU 1 seq prokMSA_id:76368 Acidobacterium group clone JG36-TzT-77 2.25.3.6.6350 OTU 1 seq prokMSA_id:58105 Ellin337 2.25.3.6.6359 OTU 2 seqs prokMSA_id:61838 Acidobacterium group clone CLi114 prokMSA_id:76027 Holophaga sp. clone JG37-AG-61 2.25.3.6.6355 OTU 1 seq prokMSA_id:77048 Holophaga sp. clone Sh765B-AG-82 2.25.3.6.6356 OTU 1 seq prokMSA_id:69818 clone FW47 2.25.3.6.6362 OTU 7 seqs prokMSA_id:3732 clone DA052 prokMSA_id:31615 WD244 clone WD244 prokMSA_id:75894 Holophaga sp. clone JG37-AG-5 AJ519364 prokMSA_id:76166 Holophaga sp. clone JG37-AG-47 prokMSA_id:93614 Acidobacteria clone JG36-GS-126 AJ582044 prokMSA_id:93694 Acidobacteria clone JG36-GS-132 AJ582045 prokMSA_id:93966 Acidobacteria clone JG36-GS-146 AJ582043 2.25.3.6.6368 OTU 41 seqs prokMSA_id:3708 clone 611 prokMSA_id:3709 clone 614 prokMSA_id:3724 clone Ep_T1.153. Z73364 prokMSA_id:3727 Mount Coot-tha region Brisbane Australia 5-10cm depth soil X prokMSA_id:3734 clone Ep_T1.154. Z73365 prokMSA_id:14397 DA038 prokMSA_id:16327 Acidobacterium UA2 prokMSA_id:24040 WD226 clone WD226 AJ292577 prokMSA_id:25003 WD247 clone WD247 prokMSA_id:28064 WD257 clone WD257 prokMSA_id:31221 Acidobacterium UA3 prokMSA_id:37457 Acidobacterium UA1 prokMSA_id:41797 Acidobacterium group YNPRH72A prokMSA_id:46677 Acidobacterium group YNPRH46A prokMSA_id:47557 WD276 clone WD276 prokMSA_id:51223 WD213 clone WD213 prokMSA_id:56082 clone RCP1-32 prokMSA_id:58117 Ellin327 prokMSA_id:58126 Ellin323 prokMSA_id:58136 Ellin310 prokMSA_id:61405 Acidobacterium group clone SMS9.16WL prokMSA_id:63242 clone FW43 AF523983 prokMSA_id:63246 clone FW116 AF523977 prokMSA_id:63248 clone FW111 prokMSA_id:63319 clone RCP2-4 AF523897 prokMSA_id:63320 clone RCP2-97 prokMSA_id:63321 clone RCP1-101 prokMSA_id:63322 clone RCP2-3 prokMSA_id:63323 clone RCP1-43 prokMSA_id:66600 Acidobacterium sp. WJ7 prokMSA_id:69821 Ellin326 AF498708 prokMSA_id:73492 Ellin311 prokMSA_id:75133 Holophaga sp. clone JG37-AG-9 prokMSA_id:76453 Holophaga sp. clone JG37-AG-67 AJ519378 prokMSA_id:76740 Acidobacterium group clone JG36-TzT-54 AJ534633 prokMSA_id:76986 Holophaga sp. clone JG37-AG-42 prokMSA_id:77412 K-5b2 prokMSA_id:79035 Holophaga sp. clone JG30-KF-A4 AJ536862 prokMSA_id:84886 clone D118 prokMSA_id:88321 delta clone ML23_ANME2 AY245460 prokMSA_id:93256 Acidobacteria clone JG36-GS-69 AJ582046 2.25.3.6.6366 OTU 5 seqs prokMSA_id:3730 clone TM2 prokMSA_id:42606 WD243 clone WD243 prokMSA_id:45591 WD228 clone WD228 prokMSA_id:73733 Ellin351 prokMSA_id:77776 Acidobacteriaceae clone:Rs-M39 2.25.3.6.6378 OTU 5 seqs prokMSA_id:3704 Acidobacterium capsulatum str. 161. D26171 prokMSA_id:3746 str. TM13 prokMSA_id:39070 WD277 clone WD277 prokMSA_id:51399 Rainforest soil clone HRS-55 prokMSA_id:73903 Acidobacterium capsulatum Acidophilic chemoorganotrophic 2.25.3.6.6405 OTU 1 seq prokMSA_id:74896 Acidobacterium group clone JG36-TzT-31 2.25.3.6.6410 OTU 1 seq prokMSA_id:63318 clone RCP2-102 2.25.3.6.6412 OTU 1 seq prokMSA_id:3735 clone TRB82 2.25.3.6.6414 OTU 1 seq prokMSA_id:61819 Acidobacterium group clone CLs73 2.25.3.6.6423 OTU 1 seq prokMSA_id:56406 clone FW92 2.25.3.6.6421 OTU 1 seq prokMSA_id:38048 WD217 clone WD217 2.25.3.6.6424 OTU 1 seq prokMSA_id:77390 K-5b10 2.25.3.6.6432 OTU 2 seqs prokMSA_id:26225 WD281 clone WD281 prokMSA_id:72400 Ellin345 2.27 SPIROCHETES_AND_RELATIVES 668 seqs 2.27.1 BRACHYSPIRA_GROUP 119 seqs 2.27.1.6548 OTU 119 seqs prokMSA_id:3750 Brachyspira hyodysenteriae str. PWS/A prokMSA_id:3751 Brachyspira innocens str. AN 520:93 group II prokMSA_id:3752 Brachyspira hyodysenteriae str. R1 prokMSA_id:3753 Brachyspira innocens str. AN 1023:90 group III prokMSA_id:3754 Brachyspira hyodysenteriae str. 2818.5 prokMSA_id:3755 Brachyspira innocens str. AN 3706:90 group III prokMSA_id:3756 Brachyspira hyodysenteriae str. AN 174:92 prokMSA_id:3757 Brachyspira innocens str. HRM-7. U23031 prokMSA_id:3758 Brachyspira innocens str. C 320 group III prokMSA_id:3760 Brachyspira innocens str. C 109 group III prokMSA_id:3761 Brachyspira innocens str. P 43 group IV prokMSA_id:3762 Brachyspira hyodysenteriae str. B204 ATCC 31212 prokMSA_id:3763 Brachyspira innocens str. C 162 group IV prokMSA_id:3768 Brachyspira hyodysenteriae str. B78 prokMSA_id:3769 Brachyspira innocens str. P43/6/78. U23032 prokMSA_id:3770 Brachyspira innocens str. B256 group III prokMSA_id:3771 Brachyspira innocens str. 155-20 prokMSA_id:3772 Brachyspira innocens str. C 555 group III prokMSA_id:3774 Brachyspira innocens str. WES-B. U23034 prokMSA_id:3776 Brachyspira innocens str. C 173 group III prokMSA_id:3777 Brachyspira aalborgi NCTC 11492 prokMSA_id:3779 Brachyspira innocens str. AN 26:93 group II prokMSA_id:3781 Brachyspira innocens str. C 378 group III prokMSA_id:3782 Brachyspira innocens str. AN 1004:90 group III prokMSA_id:3783 Brachyspira innocens str. AN 983:90 group II prokMSA_id:3784 Brachyspira innocens str. AN 167:90 group II prokMSA_id:3785 Brachyspira hyodysenteriae str. NIV-1 prokMSA_id:3786 Brachyspira innocens str. AN 916:90 group IV prokMSA_id:3788 Brachyspira hyodysenteriae str. B204 prokMSA_id:3789 Brachyspira hyodysenteriae str. A4974 prokMSA_id:3791 Brachyspira innocens str. C 265 group III prokMSA_id:3792 Brachyspira innocens str. C 301 group III prokMSA_id:16876 adhucomuHca09 prokMSA_id:18811 adhucomuHca25 prokMSA_id:25199 adhucomuHcc35 prokMSA_id:25279 Brachyspira aalborgi strain W1 prokMSA_id:25827 adhucomuHca20 prokMSA_id:26030 adhucomuTvb40 prokMSA_id:27259 Brachyspira sp. Cb104:95 prokMSA_id:28079 Brachyspira sp. A3077 prokMSA_id:30878 adhucomuHca76 prokMSA_id:32489 adhucomuHcc39 prokMSA_id:32828 Brachyspira sp. AN883:98 prokMSA_id:37834 adhucomuHcc07 AF228812 prokMSA_id:39956 adhucomuTvb21 prokMSA_id:42611 adhucomuTva35 prokMSA_id:43373 adhucomuTvb03 prokMSA_id:47721 adhucomuTva17 prokMSA_id:47728 adhucomuHca41 prokMSA_id:47881 adhucomuHcc33 prokMSA_id:49210 adhucomuTvb72 prokMSA_id:49836 Brachyspira sp. AN2608:97 prokMSA_id:72200 Brachyspira aalborgi AL prokMSA_id:72651 Brachyspira aalborgi JLL prokMSA_id:75479 Brachyspira pilosicoli AY155458 prokMSA_id:77935 Brachyspira ibaraki strain:HIS24/11/99 prokMSA_id:82516 Brachyspira pilosicoli strain OmanN26 prokMSA_id:82667 Brachyspira innocens isolate:D2A/8/31 prokMSA_id:82681 Brachyspira innocens isolate:D9D/6/15 prokMSA_id:82925 Brachyspira innocens isolate:D4A/11/9 prokMSA_id:83009 Brachyspira innocens isolate:D3A/11/9 prokMSA_id:83195 Brachyspira innocens isolate:D1A/8/31 prokMSA_id:83206 Brachyspira innocens isolate:D5A/11/9 prokMSA_id:83297 Brachyspira innocens isolate:D10A/6/15 AB093309 prokMSA_id:83588 Brachyspira innocens isolate:D4D/6/15 prokMSA_id:83600 Brachyspira innocens isolate:D12A/6/15 AB093310 prokMSA_id:83734 Brachyspira innocens isolate:D1A/10/5 prokMSA_id:83843 Brachyspira innocens isolate:D7D/6/15 prokMSA_id:83872 Brachyspira innocens AB094042 prokMSA_id:84014 Brachyspira innocens isolate:D4B/10/25 prokMSA_id:84017 Brachyspira innocens isolate:D3D/6/15 prokMSA_id:84263 Brachyspira innocens isolate:D2A/6/15 prokMSA_id:84303 Brachyspira innocens isolate:D1A/10/25 prokMSA_id:84658 Brachyspira innocens isolate:D2A/10/5 prokMSA_id:84667 Brachyspira innocens isolate:D1A/11/9 prokMSA_id:84740 Brachyspira innocens isolate:D3B/10/25 prokMSA_id:84797 Brachyspira innocens isolate:D3A/8/31 prokMSA_id:84927 Brachyspira innocens isolate:D7A/10/25 AB093321 prokMSA_id:85039 Brachyspira innocens isolate:D5D/6/15 prokMSA_id:85067 Brachyspira innocens isolate:D6B/10/25 prokMSA_id:85297 Brachyspira innocens isolate:D6B/6/15 prokMSA_id:85671 Brachyspira innocens isolate:D2A/11/9 prokMSA_id:86423 Brachyspira innocens isolate:D1D/6/15 prokMSA_id:86499 Brachyspira innocens AB094043 prokMSA_id:86505 Brachyspira innocens isolate:D9D/10/25 prokMSA_id:86660 Brachyspira innocens isolate:D2A/10/25 prokMSA_id:88315 Brachyspira canis strain AN 2657:01 AY312848 prokMSA_id:88867 Brachyspira murdochii strain 56-150 AY312492 prokMSA_id:89273 Brachyspira canis strain AN 4752:01 AY312849 prokMSA_id:90173 Brachyspira canis strain AN 5288:01 AY312846 prokMSA_id:90613 Brachyspira canis strain AN 5358:01 AY312847 prokMSA_id:92045 Brachyspira sp. AN 3599/02 AY352283 prokMSA_id:92098 Brachyspira sp. AN 3902/02 AY352286 prokMSA_id:92107 Brachyspira hyodysenteriae AN 3907/02 AY352287 prokMSA_id:92196 Brachyspira hyodysenteriae AN 383:2/00 AY352291 prokMSA_id:92217 Brachyspira sp. AN 4578/01 AY349933 prokMSA_id:92253 Brachyspira canis strain AN 5304/01 AY349938 prokMSA_id:92258 Brachyspira sp. AN 1788/01 AY349935 prokMSA_id:92268 Brachyspira sp. AN 3624/02 AY352284 prokMSA_id:92273 Brachyspira canis strain A2 AY349936 prokMSA_id:92278 Brachyspira sp. AN 3930/02 AY352288 prokMSA_id:92292 Brachyspira sp. AN 3949/02 AY352290 prokMSA_id:92338 Brachyspira sp. W2f AY349948 prokMSA_id:92341 Brachyspira canis strain AN 5467/01 AY349939 prokMSA_id:92347 Brachyspira aalborgi W3b AY349949 prokMSA_id:92356 Brachyspira sp. AN 1418/01 AY352282 prokMSA_id:92367 Brachyspira pilosicoli Dog 17 AY349944 prokMSA_id:92440 Brachyspira pilosicoli 24072-93a AY349943 prokMSA_id:92446 Brachyspira canis strain H98-13 AY349942 prokMSA_id:92499 Brachyspira canis strain AN 4771/01 AY349937 prokMSA_id:92560 Brachyspira aalborgi W2b AY349947 prokMSA_id:92698 Brachyspira pilosicoli CN 140 AY349945 prokMSA_id:92728 Brachyspira sp. AN 3931/02 AY352289 prokMSA_id:92748 Brachyspira pilosicoli H98-5 AY349946 prokMSA_id:92885 Brachyspira hyodysenteriae AN 1409/01 AY352281 prokMSA_id:92933 Brachyspira canis strain CN 6 AY349940 prokMSA_id:92968 Brachyspira sp. AN 3886/02 AY352285 prokMSA_id:93018 Brachyspira canis strain CN 129 AY349941 prokMSA_id:93115 Brachyspira sp. CN 2 AY349934 2.27.2 BRV.ANDERSONII_GROUP 1 seq 2.27.2.6598 OTU 1 seq prokMSA_id:3793 Brevinema andersonii str. FS47 2.27.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION 505 seqs 2.27.3.1 SPI.HALOPHILA_GROUP 31 seqs 2.27.3.1.6459 OTU 1 seq prokMSA_id:79117 Spirochaeta sp. BHI80-158 strain BHI80-158 2.27.3.1.6464 OTU 1 seq prokMSA_id:38610 Spirochaeta sp. clone za29 2.27.3.1.6467 OTU 1 seq prokMSA_id:3801 Spirochaeta sp. str. TM3 2.27.3.1.6465 OTU 1 seq prokMSA_id:52112 Spirochaeta sp. Grapes 2.27.3.1.6469 OTU 1 seq prokMSA_id:3807 Spirochaeta asiatica str. Z-7591 DSM 8901 2.27.3.1.6468 OTU 1 seq prokMSA_id:3802 Spirochaeta africana str. Z-7692 DSM 8902 2.27.3.1.6478 OTU 2 seqs prokMSA_id:3804 Spirochaeta alkalica str. Z-7491 DSM 8900 prokMSA_id:38562 Spirochaeta sp. ASpG1 2.27.3.1.6482 OTU 2 seqs prokMSA_id:17526 Spirochaeta sp. MERTZ_21CM_149 prokMSA_id:59817 clone OB3_185 2.27.3.1.6503 OTU 3 seqs prokMSA_id:36866 DCE33 AF349763 prokMSA_id:66166 clone IIIB-9 prokMSA_id:74347 DCE25 2.27.3.1.6513 OTU 2 seqs prokMSA_id:63216 clone FW20 prokMSA_id:63217 clone FW67 2.27.3.1.6516 OTU 1 seq prokMSA_id:36699 spirochete MT10 2.27.3.1.6514 OTU 2 seqs prokMSA_id:77624 Treponema sp. clone:Rs-H09 prokMSA_id:77774 Spirochaeta sp. clone:Rs-B68 2.27.3.1.6534 OTU 1 seq prokMSA_id:3803 clone MUG26 2.27.3.1.6536 OTU 1 seq prokMSA_id:3805 clone CLEAR-22 2.27.3.1.6537 OTU 1 seq prokMSA_id:3806 Spirochaeta Olavius loisae endosymbiont 4 2.27.3.1.6538 OTU 1 seq prokMSA_id:3808 clone ACE-19 2.27.3.1.6547 OTU 1 seq prokMSA_id:62701 Spirochaetaceae clone ML623J-23 2.27.3.1.6558 OTU 1 seq prokMSA_id:37803 Spironema culicis 2.27.3.1.6557 OTU 1 seq prokMSA_id:56171 spirochete clone ML320J-13 2.27.3.1.6582 OTU 1 seq prokMSA_id:25074 spirochete MERTZ_21CM_139 2.27.3.1.6602 OTU 1 seq prokMSA_id:3799 Spirochaeta halophila str. RS1 ATCC 29478 2.27.3.1.6600 OTU 1 seq prokMSA_id:3797 Spirochaeta litoralis str. R1 ATCC 27000 2.27.3.1.6607 OTU 1 seq prokMSA_id:3812 Spirochaeta thermophila DSM 6192 2.27.3.1.6609 OTU 1 seq prokMSA_id:3821 clone BURTON-26 2.27.3.1.6610 OTU 1 seq prokMSA_id:38414 spirochete MT57 2.27.3.2 TREPONEMA_GROUP 266 seqs 2.27.3.2.1 TRP.BRYANTII_SUBGROUP 9 seqs 2.27.3.2.1.6483 OTU 2 seqs prokMSA_id:17711 fiber-attaching rumen SY2 prokMSA_id:39089 fiber-attaching rumen clone:SY22 2.27.3.2.1.6561 OTU 4 seqs prokMSA_id:3829 Treponema bryantii str. RUS-1 ATCC 33254 prokMSA_id:3830 clone RC1 prokMSA_id:3831 clone RF13 prokMSA_id:3833 clone RFN95 2.27.3.2.1.6593 OTU 1 seq prokMSA_id:71422 mpn-isolate group 17 2.27.3.2.1.6591 OTU 1 seq prokMSA_id:42877 Treponema pectinovorum OMZ831 2.27.3.2.1.6612 OTU 1 seq prokMSA_id:3826 Treponema saccharophilum str. PB ATCC 43261 2.27.3.2.2 TRP.SOCRANSKII_SUBGROUP 67 seqs 2.27.3.2.2.6484 OTU 4 seqs prokMSA_id:3852 Treponema amylovorum prokMSA_id:3855 Treponema V:20:D62 str. V:20:D62 prokMSA_id:3856 Treponema V:A:U7A str. V:A:U7A prokMSA_id:3859 Treponema 5:C:AT040 str. 5:C:AT040. AF182834 2.27.3.2.2.6492 OTU 6 seqs prokMSA_id:3862 Treponema Treponema clone RFS12 prokMSA_id:26242 Treponema clone RsDiSp12 prokMSA_id:36987 Treponema clone HsPySp16 prokMSA_id:37517 Treponema clone HsPySp15 prokMSA_id:47422 Treponema clone RsDiSp1 prokMSA_id:78106 Treponema sp. clone:Rs-E01 2.27.3.2.2.6526 OTU 1 seq prokMSA_id:83155 Treponema sp. 7CPL208 2.27.3.2.2.6531 OTU 1 seq prokMSA_id:3854 Treponema V:19:D36 str. V:19:D36 2.27.3.2.2.6546 OTU 5 seqs prokMSA_id:3853 Treponema Smibert-2 str. D96NR-3. AF033304 prokMSA_id:17854 Treponema parvum OMZ843 prokMSA_id:30574 Treponema parvum OMZ842 prokMSA_id:36464 Treponema parvum OMZ833 prokMSA_id:49225 Treponema parvum OMZ832 2.27.3.2.2.6560 OTU 2 seqs prokMSA_id:3886 Spirochaeta sp prokMSA_id:3887 Spirochaeta sp 2.27.3.2.2.6567 OTU 1 seq prokMSA_id:78163 Treponema sp. clone:Rs-A48 2.27.3.2.2.6570 OTU 8 seqs prokMSA_id:3861 Treponema maltophilum str. BR prokMSA_id:3880 Treponema IV:17B:C21 str. IV:17B:C21 prokMSA_id:3882 Treponema IV:17C:GF6 str. IV:17C:GF6 prokMSA_id:3883 Treponema IV:17D:D31 str. IV:17D:D31 prokMSA_id:3884 Treponema IV:18:C9 str. IV:18:C9 prokMSA_id:3888 Treponema IV:17E:D36 str. IV:17E:D36 prokMSA_id:38741 Treponema lecithinolyticum isolate PFB4G AJ131282 prokMSA_id:63015 Treponema lecithinolytikum patient PFB4G X87139 2.27.3.2.2.6576 OTU 1 seq prokMSA_id:78359 Treponema sp. clone:Rs-J14 2.27.3.2.2.6578 OTU 12 seqs prokMSA_id:3876 Treponema Treponema clone RFS105 prokMSA_id:3877 Treponema Treponema clone RFS2 prokMSA_id:3878 Treponema Treponema clone RFS66 prokMSA_id:3879 Treponema Treponema clone RFS9 prokMSA_id:3969 Treponema Treponema clone RFS29. AF068339 prokMSA_id:22641 Treponema clone HsDiSp314 prokMSA_id:29435 Treponema clone HsPySp1 prokMSA_id:30690 Treponema clone RsDiSp3 prokMSA_id:43411 Treponema clone RsDiSp9 prokMSA_id:46814 Treponema clone HsPySp20 prokMSA_id:77852 Treponema sp. clone:Rs-G65 prokMSA_id:78226 Treponema sp. clone:Rs-P12 2.27.3.2.2.6581 OTU 1 seq prokMSA_id:42928 equine intestinal sp. ML20 clone ML20 2.27.3.2.2.6590 OTU 2 seqs prokMSA_id:3860 Treponema 5:22:BH022 str. 5:22:BH022 prokMSA_id:29328 Treponema sp. oral clone BZ013 AF385536 2.27.3.2.2.6604 OTU 18 seqs prokMSA_id:3838 Treponema socranskii subsp. socranskii str. D56BRIII6 ATCC 3 prokMSA_id:3839 Treponema socranskii subsp. socranskii str. 122C prokMSA_id:3840 Treponema socranskii subsp. socranskii str. 1166 prokMSA_id:3841 Treponema socranskii subsp. socranskii str. 128B prokMSA_id:3842 Treponema socranskii subsp. socranskii str. 1267 prokMSA_id:3843 Treponema socranskii subsp. buccale str. 351 prokMSA_id:3844 Treponema socranskii subsp. buccale str. B418 prokMSA_id:3845 Treponema socranskii subsp. buccale str. T10 prokMSA_id:3846 Treponema Smibert-5 str. D120CR-1 prokMSA_id:3847 Treponema socranskii subsp. '04' str. D11B-2 prokMSA_id:3848 Treponema VI:G:G47 str. VI:G:G47 prokMSA_id:3849 Treponema VI:F:C44 str. VI:F:C44 prokMSA_id:3850 Treponema socranskii subsp. paredis ATCC 35535 prokMSA_id:3851 Treponema socranskii subsp. buccale ATCC 35534 prokMSA_id:24210 Treponema sp. 6:H:D15A-4 prokMSA_id:94913 Treponema socranskii subsp. '04' strain D40DR-2 AY369246 prokMSA_id:95105 Treponema socranskii subsp. buccale strain OMZ 884 AY369255 prokMSA_id:95113 Treponema socranskii subsp. paredis strain OMZ 882 AY369254 2.27.3.2.2.6614 OTU 1 seq prokMSA_id:3889 Treponema brennaborense 2.27.3.2.2.6615 OTU 3 seqs prokMSA_id:3980 Spirochaeta sp prokMSA_id:4007 Spirochaeta sp prokMSA_id:77899 Treponema sp. clone:Rs-Q63 2.27.3.2.2.6619 OTU 1 seq prokMSA_id:3892 str. sp40-12 2.27.3.2.3 TRP.PALLIDUM_SUBGROUP 34 seqs 2.27.3.2.3.6475 OTU 2 seqs prokMSA_id:3964 Treponema pallidum str. Nichols prokMSA_id:40086 Treponema pallidum subsp. pertenue 2.27.3.2.3.6474 OTU 1 seq prokMSA_id:3906 Treponema III:13:D94 str. III:13:D94 2.27.3.2.3.6479 OTU 1 seq prokMSA_id:3927 Treponema sp 2.27.3.2.3.6502 OTU 8 seqs prokMSA_id:3898 Treponema denticola ATCC 35405 prokMSA_id:3899 Treponema denticola ATCC 35404 prokMSA_id:3911 Treponema II:11:C3 str. II:11:C3 prokMSA_id:3912 Treponema II:11:C57 str. II:11:C57 prokMSA_id:3915 Treponema denticola str. W ATCC 33520 prokMSA_id:64388 Treponema denticola prokMSA_id:85243 Treponema putidum strain ATCC 700334 prokMSA_id:86665 Treponema sp. oral clone P2PB_53 P3 2.27.3.2.3.6505 OTU 9 seqs prokMSA_id:3907 Treponema II:10:D12 str. II:10:D12 prokMSA_id:3908 Treponema II:C:T1 str. II:C:T1 prokMSA_id:3909 Treponema II:D:G93 str. II:D:G93 prokMSA_id:3910 Treponema II:11:U61 str. II:E:U61 prokMSA_id:3913 Treponema II:H:D11 str. II:H:D11 prokMSA_id:3914 Treponema II:I:C53 str. II:I:C53 prokMSA_id:3916 unnamed organism prokMSA_id:3919 str. 9-3143 prokMSA_id:36733 Treponema sp. G179 complete 2.27.3.2.3.6522 OTU 1 seq prokMSA_id:73875 Treponema refringens 2.27.3.2.3.6528 OTU 1 seq prokMSA_id:46681 AA14 2.27.3.2.3.6540 OTU 7 seqs prokMSA_id:3905 Treponema III:A:D24 str. III:A:D24 prokMSA_id:3917 Treponema III:B:U8A str. III:B:U8A prokMSA_id:3921 Treponema III:F:AT004 str. III:F:AT004 prokMSA_id:3922 Treponema 3:E:AT013 str. 3:E:AT013 prokMSA_id:3923 Treponema 3:D:BQ032 str. 3:D:BQ032 prokMSA_id:3957 Treponema 3:G:BB003 str. 3:G:BB003 prokMSA_id:59569 Treponema sp. oral clone EX137 2.27.3.2.3.6580 OTU 1 seq prokMSA_id:3918 Treponema III:C:BA213 str. III:C:BA213 2.27.3.2.3.6608 OTU 1 seq prokMSA_id:47380 Treponema calligyrum 2.27.3.2.3.6611 OTU 1 seq prokMSA_id:3949 str. 2-1498 2.27.3.2.3.6618 OTU 1 seq prokMSA_id:3963 Treponema sp 2.27.3.2.4 SPI.STENOSTREPTA_SUBGROUP 14 seqs 2.27.3.2.4.6458 OTU 1 seq prokMSA_id:73922 spirochete clone: NkS34 2.27.3.2.4.6466 OTU 1 seq prokMSA_id:81100 clone ZZ12C6 2.27.3.2.4.6472 OTU 1 seq prokMSA_id:59907 spirochete clone ccslm2126 2.27.3.2.4.6494 OTU 1 seq prokMSA_id:78058 Treponema sp. clone:Rs-C47 2.27.3.2.4.6527 OTU 1 seq prokMSA_id:3966 clone WCHB1-40 2.27.3.2.4.6530 OTU 1 seq prokMSA_id:3984 Treponema Treponema clone RFS6 2.27.3.2.4.6562 OTU 1 seq prokMSA_id:63291 clone RCP1-96 2.27.3.2.4.6574 OTU 1 seq prokMSA_id:4003 Treponema Treponema clone RFS81 2.27.3.2.4.6572 OTU 1 seq prokMSA_id:51498 Spirochaeta sp. clone nc5 2.27.3.2.4.6577 OTU 1 seq prokMSA_id:4008 clone R5-B26 2.27.3.2.4.6596 OTU 2 seqs prokMSA_id:4004 Treponema Treponema clone RFS84 prokMSA_id:42498 Spirochaeta sp. clone rs443 2.27.3.2.4.6621 OTU 1 seq prokMSA_id:3968 clone WCHB1-30 2.27.3.2.4.6620 OTU 1 seq prokMSA_id:3967 clone WCHB1-91 2.27.3.2.5 SPI.SPMAST_SUBGROUP 9 seqs 2.27.3.2.5.6507 OTU 4 seqs prokMSA_id:69247 spirochete clone: NkS4 prokMSA_id:69670 spirochete clone: NkS-Ste2 prokMSA_id:72109 spirochete clone: NkS-Dev14 AB085159 prokMSA_id:73183 spirochete clone: NkS-Oxy70 2.27.3.2.5.6552 OTU 1 seq prokMSA_id:77955 Treponema sp. clone:Rs-E91 2.27.3.2.5.6583 OTU 2 seqs prokMSA_id:78017 Treponema sp. clone:Rs-Q13 prokMSA_id:78252 Treponema sp. clone:Rs-J42 2.27.3.2.5.6585 OTU 1 seq prokMSA_id:4027 Treponema Treponema clone RFS60 2.27.3.2.5.6597 OTU 1 seq prokMSA_id:21434 Treponema sp. clone:BCf1-01 2.27.3.2.6 STR.MPSP16_SUBGROUP 131 seqs 2.27.3.2.6.6461 OTU 1 seq prokMSA_id:78244 Treponema sp. clone:Rs-J54 2.27.3.2.6.6460 OTU 1 seq prokMSA_id:77997 Treponema sp. clone:Rs-B69 2.27.3.2.6.6463 OTU 1 seq prokMSA_id:78179 Treponema sp. clone:Rs-C91 2.27.3.2.6.6471 OTU 1 seq prokMSA_id:4098 Treponema Treponema clone RFS52 2.27.3.2.6.6477 OTU 1 seq prokMSA_id:83413 Spirochete symbiont of Mixotricha paradoxa clone mp3 2.27.3.2.6.6473 OTU 1 seq prokMSA_id:77621 Treponema sp. clone:Rs-B29 2.27.3.2.6.6476 OTU 1 seq prokMSA_id:74426 spirochete clone: NkS50 2.27.3.2.6.6481 OTU 1 seq prokMSA_id:78281 Treponema sp. clone:Rs-C15 2.27.3.2.6.6485 OTU 1 seq prokMSA_id:4125 Treponema Treponema clone RFS64 2.27.3.2.6.6486 OTU 1 seq prokMSA_id:4126 Treponema Treponema clone RFS99 2.27.3.2.6.6489 OTU 1 seq prokMSA_id:83652 Spirochete symbiont of Mixotricha paradoxa clone mp1 2.27.3.2.6.6488 OTU 57 seqs prokMSA_id:4009 Treponema ZAS-1 str. ZAS-1 prokMSA_id:4084 Treponema Treponema clone RFS25 prokMSA_id:4085 Treponema Treponema clone RFS21 prokMSA_id:4086 Treponema Treponema clone RFS3 prokMSA_id:4087 Treponema Treponema clone RFS41 prokMSA_id:4088 Treponema Treponema clone RFS8 prokMSA_id:4099 Treponema Treponema clone RFS7 prokMSA_id:4100 Treponema Treponema clone RFS75 prokMSA_id:4101 Treponema Treponema clone RFS82 prokMSA_id:4114 Treponema ZAS-2 str. ZAS-2 prokMSA_id:4116 Treponema Treponema clone RFS15. AF068336 prokMSA_id:24078 Treponema clone HsPySp4 prokMSA_id:29732 Treponema clone RsDiSp8 prokMSA_id:32372 Treponema clone HsDiSp320 prokMSA_id:44741 Spirochaeta sp. clone rs402 prokMSA_id:44787 Spirochaeta sp. clone nc40 prokMSA_id:46398 clone:BCf6-24 AB062834 prokMSA_id:69074 spirochete clone: NkS1 prokMSA_id:69104 spirochete clone: NkS21 prokMSA_id:69148 spirochete clone: NkS56 prokMSA_id:69426 spirochete clone: NkS15 prokMSA_id:69563 spirochete clone: NkS-Oxy8 prokMSA_id:69619 spirochete clone: NkS-Oxy26 prokMSA_id:70117 spirochete clone: NkS-Oxy1 prokMSA_id:70817 spirochete clone: NkS85 prokMSA_id:70909 spirochete clone: NkS-Oxy3 prokMSA_id:71442 spirochete clone: NkS94 prokMSA_id:71676 spirochete clone: NkS53 prokMSA_id:71891 spirochete clone: NkS37 prokMSA_id:72131 spirochete clone: NkS49 prokMSA_id:73490 spirochete clone: NkS97 prokMSA_id:73924 spirochete clone: NkS8 prokMSA_id:74331 spirochete clone: NkS5 prokMSA_id:74527 spirochete clone: NkS95 prokMSA_id:77582 Treponema sp. clone:Rs-D40 prokMSA_id:77591 Treponema sp. clone:Rs-Q78 prokMSA_id:77600 Treponema sp. clone:Rs-P25 prokMSA_id:77606 Treponema sp. clone:Rs-C35 prokMSA_id:77632 Treponema sp. clone:Rs-C32 prokMSA_id:77647 Treponema sp. clone:Rs-P59 prokMSA_id:77677 Treponema sp. clone:Rs-E18 prokMSA_id:77686 Treponema sp. clone:Rs-D47 prokMSA_id:77700 Treponema sp. clone:Rs-A16 AB088892 prokMSA_id:77759 Treponema sp. clone:Rs-H62 prokMSA_id:77775 Treponema sp. clone:Rs-E15 prokMSA_id:77778 Treponema sp. clone:Rs-A77 prokMSA_id:77811 Treponema sp. clone:Rs-D01 prokMSA_id:77877 Treponema sp. clone:Rs-A09 AB088905 prokMSA_id:77905 Treponema sp. clone:Rs-E03 prokMSA_id:77953 Treponema sp. clone:Rs-B10 prokMSA_id:77980 Treponema sp. clone:Rs-E37 prokMSA_id:78076 Treponema sp. clone:Rs-D73 prokMSA_id:78092 Treponema sp. clone:Rs-D13 prokMSA_id:78117 Treponema sp. clone:Rs-F60 prokMSA_id:78272 Treponema sp. clone:Rs-D96 prokMSA_id:78296 Treponema sp. clone:Rs-J93 prokMSA_id:78381 Treponema sp. clone:Rs-D53 2.27.3.2.6.6491 OTU 5 seqs prokMSA_id:17555 clone:BCf9-08 prokMSA_id:25068 clone:BCf5-01 prokMSA_id:36150 clone:BCf11-05 prokMSA_id:38586 clone:BCf8-03 prokMSA_id:78047 Treponema sp. clone:Rs-D57 2.27.3.2.6.6487 OTU 1 seq prokMSA_id:78105 Treponema sp. clone:Rs-D52 2.27.3.2.6.6490 OTU 1 seq prokMSA_id:48891 clone:BCf4-14 2.27.3.2.6.6495 OTU 1 seq prokMSA_id:4062 Spirochaeta sp 2.27.3.2.6.6498 OTU 1 seq prokMSA_id:4065 Spirochaeta sp 2.27.3.2.6.6501 OTU 1 seq prokMSA_id:4068 Spirochaeta sp 2.27.3.2.6.6497 OTU 1 seq prokMSA_id:4063 Spirochaeta sp 2.27.3.2.6.6500 OTU 1 seq prokMSA_id:4067 Spirochaeta sp 2.27.3.2.6.6506 OTU 3 seqs prokMSA_id:78119 Treponema sp. clone:Rs-G28 prokMSA_id:78155 Treponema sp. clone:Rs-H84 prokMSA_id:78206 Treponema sp. clone:Rs-J58 2.27.3.2.6.6504 OTU 1 seq prokMSA_id:4069 Spirochaeta sp 2.27.3.2.6.6510 OTU 1 seq prokMSA_id:4071 Spirochaeta sp 2.27.3.2.6.6511 OTU 4 seqs prokMSA_id:40147 Spirochaeta sp. kf401 prokMSA_id:69324 spirochete clone: NkS93 prokMSA_id:69390 spirochete clone: NkS-Ste1 prokMSA_id:72963 spirochete clone: NkS-Dev1 2.27.3.2.6.6508 OTU 2 seqs prokMSA_id:4043 str. mpsp2 prokMSA_id:4115 str. sp40-7 2.27.3.2.6.6520 OTU 2 seqs prokMSA_id:4076 str. sp5-9. X89042 prokMSA_id:4082 str. mpsp16 2.27.3.2.6.6519 OTU 1 seq prokMSA_id:4080 str. sp40-8 2.27.3.2.6.6517 OTU 1 seq prokMSA_id:23660 Treponema sp. ZAS-9 2.27.3.2.6.6521 OTU 1 seq prokMSA_id:4083 str. sp40-11 2.27.3.2.6.6523 OTU 1 seq prokMSA_id:78395 Treponema sp. clone:Rs-J64 2.27.3.2.6.6529 OTU 1 seq prokMSA_id:16871 clone:BCf10-21 2.27.3.2.6.6535 OTU 1 seq prokMSA_id:77792 Treponema sp. clone:Rs-B94 2.27.3.2.6.6532 OTU 1 seq prokMSA_id:56589 spirochete clone: NkS39 2.27.3.2.6.6541 OTU 1 seq prokMSA_id:4046 clone Cd48 2.27.3.2.6.6543 OTU 1 seq prokMSA_id:4047 Treponema Treponema clone RFS11 2.27.3.2.6.6544 OTU 1 seq prokMSA_id:4127 Treponema Treponema clone RFS18 2.27.3.2.6.6550 OTU 1 seq prokMSA_id:22449 Spirochaeta sp. clone kf428 2.27.3.2.6.6554 OTU 1 seq prokMSA_id:78084 Treponema sp. clone:Rs-D43 2.27.3.2.6.6555 OTU 1 seq prokMSA_id:4053 Treponema Treponema clone RFS94 2.27.3.2.6.6564 OTU 1 seq prokMSA_id:25824 Treponema clone HsDiSp319 2.27.3.2.6.6569 OTU 1 seq prokMSA_id:27500 Spirochaeta sp. clone kf612 2.27.3.2.6.6568 OTU 1 seq prokMSA_id:40667 Spirochaeta sp. clone rs438 2.27.3.2.6.6565 OTU 2 seqs prokMSA_id:69238 spirochete clone: NkS-Oxy25 prokMSA_id:69779 spirochete clone: NkS9 2.27.3.2.6.6571 OTU 1 seq prokMSA_id:86557 Spirochete symbiont of Mixotricha paradoxa clone mp4 2.27.3.2.6.6573 OTU 1 seq prokMSA_id:69510 spirochete clone: NkS7 2.27.3.2.6.6579 OTU 1 seq prokMSA_id:69543 spirochete clone: NkS83 2.27.3.2.6.6575 OTU 2 seqs prokMSA_id:59914 spirochete clone ccslm226 prokMSA_id:91429 clone SR_FBR_L44 AY340839 2.27.3.2.6.6589 OTU 3 seqs prokMSA_id:4056 clone SJA-102 prokMSA_id:4131 clone SJA-69 prokMSA_id:4132 clone SJA-182 2.27.3.2.6.6587 OTU 1 seq prokMSA_id:4097 Treponema Treponema clone RFS102 2.27.3.2.6.6586 OTU 1 seq prokMSA_id:35642 clone:BCf9-14 2.27.3.2.6.6588 OTU 1 seq prokMSA_id:4038 str. sp5-18 2.27.3.2.6.6592 OTU 1 seq prokMSA_id:4044 clone Cd3 2.27.3.2.6.6594 OTU 1 seq prokMSA_id:4118 Treponema Treponema clone CFS121 2.27.3.2.6.6595 OTU 1 seq prokMSA_id:4049 Treponema Treponema clone CFS6 2.27.3.2.6.6599 OTU 1 seq prokMSA_id:31994 clone:BCf6-15 2.27.3.2.6.6601 OTU 3 seqs prokMSA_id:4117 Treponema Treponema clone CFS124 prokMSA_id:35727 clone:BCf3-09 prokMSA_id:47692 clone:BCf5-23 2.27.3.2.6.6603 OTU 1 seq prokMSA_id:27323 clone:BCf7-24 2.27.3.2.6.6623 OTU 1 seq prokMSA_id:78014 Treponema sp. clone:Rs-D46 2.27.3.2.7 SPI.SPNL1_SUBGROUP 2 seqs 2.27.3.2.7.6499 OTU 1 seq prokMSA_id:4139 Spirochaeta sp 2.27.3.2.7.6509 OTU 1 seq prokMSA_id:4143 Spirochaeta sp 2.27.3.3 SPI.AURANTIA 3 seqs 2.27.3.3.6549 OTU 1 seq prokMSA_id:63294 clone RCP1-64 2.27.3.3.6622 OTU 2 seqs prokMSA_id:4145 Spirochaeta aurantia subsp. aurantia str. J1 ATCC 25082 prokMSA_id:89319 Spirochaeta aurantia isolate WQM4 AJ565432 2.27.3.4 CRS.SP_STR_CP1 1 seq 2.27.3.4.6515 OTU 1 seq prokMSA_id:4146 Cristispira sp. str. CP1 2.27.3.5 BORRELIA_GROUP 204 seqs 2.27.3.5.6493 OTU 3 seqs prokMSA_id:4182 Borrelia anserina str. ES-1 prokMSA_id:4296 Borrelia burgdorferi str. CA8. AJ224134 prokMSA_id:4297 Borrelia burgdorferi str. CA29. AJ224135 2.27.3.5.6566 OTU 201 seqs prokMSA_id:4147 Borrelia burgdorferi str. R-IP90. M89937 prokMSA_id:4148 Borrelia coriaceae str. Co53 ATCC 43381 . M60970 prokMSA_id:4149 Borrelia hermsii str. HS1T ATCC 35209 prokMSA_id:4151 Borrelia burgdorferi str. 20004. M64310 prokMSA_id:4153 Borrelia burgdorferi str. CA2-87 prokMSA_id:4154 Borrelia coriaceae str. Co53 ATCC 43381 prokMSA_id:4155 Borrelia persica str. UESV/340 prokMSA_id:4157 Borrelia burgdorferi str. 272 prokMSA_id:4158 Borrelia afzelii str. DK5 prokMSA_id:4159 Borrelia garinii str. SL20 prokMSA_id:4160 Borrelia garinii str. DK29 prokMSA_id:4161 Borrelia garinii str. isolate Far01. AJ009749 prokMSA_id:4162 Borrelia garinii str. isolate Far02. AJ009750 prokMSA_id:4163 Borrelia garinii str. isolate Fis01 prokMSA_id:4164 Borrelia garinii str. isolate Far03. AJ009752 prokMSA_id:4165 Borrelia garinii str. isolate Far04. AJ009753 prokMSA_id:4166 Borrelia garinii str. A87S. AF010165 prokMSA_id:4168 Borrelia garinii str. 20047 prokMSA_id:4169 Borrelia tanukii str. OR2eL prokMSA_id:4170 Borrelia tanukii str. Hk501 prokMSA_id:4171 Borrelia garinii str. ChY13p prokMSA_id:4172 Borrelia lonestari str. Texas 20 prokMSA_id:4173 Borrelia afzelii str. DK4 prokMSA_id:4174 Borrelia garinii str. PBi prokMSA_id:4177 Borrelia garinii str. DK27 prokMSA_id:4179 Borrelia burgdorferi str. Illinois 1. M89936 prokMSA_id:4180 Borrelia burgdorferi str. DK7 prokMSA_id:4183 Borrelia burgdorferi str. B31 ATCC 35210 prokMSA_id:4185 Borrelia burgdorferi str. 934U prokMSA_id:4187 Borrelia burgdorferi prokMSA_id:4188 Borrelia burgdorferi prokMSA_id:4189 Borrelia burgdorferi prokMSA_id:4190 Borrelia burgdorferi prokMSA_id:4191 Borrelia valaisiana str. AR-2. U78153 prokMSA_id:4192 Borrelia valaisiana str. M19. U78154 prokMSA_id:4193 Borrelia valaisiana str. M49. U78155 prokMSA_id:4194 Borrelia valaisiana str. M53. U78156 prokMSA_id:4195 Borrelia valaisiana str. VS116 prokMSA_id:4196 Borrelia valaisiana str. UK prokMSA_id:4197 Borrelia valaisiana str. VS116. U78152 prokMSA_id:4198 Borrelia afzelii str. HT61 prokMSA_id:4199 Borrelia andersonii prokMSA_id:4202 Borrelia andersonii prokMSA_id:4203 Borrelia japonica prokMSA_id:4204 Borrelia sp prokMSA_id:4205 Borrelia duttoni prokMSA_id:4208 Borrelia burgdorferi str. VS219 prokMSA_id:4209 Borrelia burgdorferi str. 9MT prokMSA_id:4210 Borrelia sp. str. VS116 prokMSA_id:4211 Borrelia valaisiana str. CKA3a prokMSA_id:4212 Borrelia valaisiana str. CKA1 prokMSA_id:4213 Borrelia sp. str. Am501 prokMSA_id:4214 Borrelia turdi str. Ya501 prokMSA_id:4215 Borrelia turdi str. Ac502 prokMSA_id:4216 Borrelia A14S str. A14S prokMSA_id:4217 Borrelia burgdorferi str. 5MT prokMSA_id:4218 Borrelia valaisiana str. CKA2a prokMSA_id:4219 Borrelia valaisiana str. CKA4a prokMSA_id:4220 Borrelia 10MT str. 10MT prokMSA_id:4221 Borrelia sp. str. FCB-1 prokMSA_id:4222 Borrelia recurrentis str. A4. AF107356 prokMSA_id:4223 Borrelia recurrentis str. A5. AF107357 prokMSA_id:4224 Borrelia recurrentis str. A8. AF107358 prokMSA_id:4225 Borrelia recurrentis str. A10. AF107359 prokMSA_id:4226 Borrelia recurrentis str. A17. AF107360 prokMSA_id:4227 Borrelia recurrentis str. A11. AF107361 prokMSA_id:4228 Borrelia recurrentis str. A16. AF107362 prokMSA_id:4233 Borrelia recurrentis str. A1. AF107367 prokMSA_id:4235 Borrelia turicatae str. M2007 prokMSA_id:4237 Borrelia burgdorferi str. 1352. M64309 prokMSA_id:4238 Borrelia japonica prokMSA_id:4239 Borrelia burgdorferi str. B31 ATCC 35210 prokMSA_id:4240 Borrelia miyamotoi str. HT31 JCM 9579 prokMSA_id:4241 Borrelia hermsii str. HS1T ATCC 35209 prokMSA_id:4243 Borrelia crocidurae str. UESV/626BAN prokMSA_id:4244 Borrelia crocidurae str. UESV/917BAR prokMSA_id:4249 Borrelia crocidurae str. UESV/523SIS prokMSA_id:4250 Borrelia crocidurae str. UESV/1096TEN prokMSA_id:4252 Borrelia duttonii str. UR/BD94MIT prokMSA_id:4254 Borrelia hispanica str. UESV/246 prokMSA_id:4255 Borrelia recurrentis str. A1 prokMSA_id:4256 Borrelia sp prokMSA_id:4257 Borrelia burgdorferi str. Sh-2-82 prokMSA_id:4258 Borrelia burgdorferi str. 935T prokMSA_id:4259 Borrelia tanukii str. NPNE1 prokMSA_id:4263 Borrelia burgdorferi str. 17Y prokMSA_id:4265 Borrelia burgdorferi str. 297 prokMSA_id:4266 Borrelia burgdorferi str. R-IP3. M84815 prokMSA_id:4267 Borrelia afzelii str. DK3 prokMSA_id:4268 Borrelia afzelii str. VS461. U78151 prokMSA_id:4269 Borrelia japonica str. IKA2 prokMSA_id:4270 Borrelia burgdorferi str. G1. M64311 prokMSA_id:4271 Borrelia afzelii prokMSA_id:4272 Borrelia japonica str. HO14 prokMSA_id:4274 Borrelia hermsii. M85075 prokMSA_id:4275 Borrelia burgdorferi str. G2. M60967 prokMSA_id:4277 Borrelia burgdorferi str. MUL prokMSA_id:4279 Borrelia burgdorferi str. Kipp prokMSA_id:4280 Borrelia burgdorferi str. DUNKIRK prokMSA_id:4282 Borrelia afzelii str. DK1 prokMSA_id:4283 Borrelia burgdorferi str. DN127 prokMSA_id:4285 Borrelia burgdorferi prokMSA_id:4286 str. Z41293 prokMSA_id:4287 str. Z41493 prokMSA_id:4288 Borrelia sinica str. CMN3 prokMSA_id:4290 Borrelia sinica str. CMN2 prokMSA_id:4293 Borrelia burgdorferi str. CA28 prokMSA_id:4295 Borrelia burgdorferi str. CA13 prokMSA_id:4298 Borrelia burgdorferi str. CA2 prokMSA_id:4300 Borrelia burgdorferi str. 25015 prokMSA_id:4304 Borrelia burgdorferi str. NE49 prokMSA_id:16983 Borrelia sp. HNM13 AF055421 prokMSA_id:19185 Borrelia hermsii strain SB82 prokMSA_id:19331 Borrelia afzelii strain:N490 AB035405 prokMSA_id:19525 Borrelia sp. KR1 prokMSA_id:20565 Borrelia garinii strain:F508 AB035394 prokMSA_id:21264 Borrelia sp. HNM19 AF055420 prokMSA_id:22412 Borrelia garinii strain:F669 AB035393 prokMSA_id:23336 Borrelia garinii strain:F641 AB035392 prokMSA_id:25006 Borrelia sp. TA1 prokMSA_id:25669 Borrelia burgdorferi prokMSA_id:26743 Borrelia garinii strain:N346 AB035401 prokMSA_id:26944 Borrelia garinii strain:U039 AB035400 prokMSA_id:27079 Borrelia coriaceae isolate Co53 AF210134 prokMSA_id:27096 Borrelia burgdorferi strain:297 AB035408 prokMSA_id:27288 Borrelia garinii strain:F632 AB035403 prokMSA_id:27883 Borrelia garinii strain:N303 AB035387 prokMSA_id:28678 Borrelia hermsii strain MC77 AF228029 prokMSA_id:31684 Borrelia garinii strain:PBi AB035385 prokMSA_id:32451 Borrelia parkeri prokMSA_id:33474 Borrelia garinii strain:F624 AB035399 prokMSA_id:33625 Borrelia sp. EFL-S0100110 prokMSA_id:34189 Borrelia garinii strain:T25 AB035388 prokMSA_id:35785 Borrelia afzelii strain:N334 AB035407 prokMSA_id:37085 Borrelia sp. HN8 AF055418 prokMSA_id:38090 Borrelia coriaceae isolate CA435 AF210136 prokMSA_id:41987 Borrelia garinii strain:N417 AB035390 prokMSA_id:43875 Borrelia coriaceae isolate CA434 AF210135 prokMSA_id:44343 Borrelia sp. TM1 prokMSA_id:44729 Borrelia garinii strain:U063 AB035389 prokMSA_id:45376 Borrelia garinii strain:N341 AB035395 prokMSA_id:45780 Borrelia sp. HN6 AF055416 prokMSA_id:46301 Borrelia garinii strain:K269 AB035397 prokMSA_id:47110 Borrelia garinii strain:F511 AB035386 prokMSA_id:48535 Borrelia hermsii strain NM84 AF228030 prokMSA_id:49261 Borrelia garinii strain:N374 AB035396 prokMSA_id:51974 Borrelia sp. LB-2001 prokMSA_id:52230 Borrelia garinii strain:F548 AB035391 prokMSA_id:52646 Borrelia garinii strain:N410 AB035402 prokMSA_id:52958 Borrelia afzelii strain:U001 AB035406 prokMSA_id:55311 Borrelia valaisiana strain:OS115/01 prokMSA_id:55731 Borrelia garinii strain:Tr77 prokMSA_id:55971 Borrelia valaisiana strain:OG45/01 prokMSA_id:59693 Borrelia garinii strain:Tr309 prokMSA_id:59694 Borrelia burgdorferi strain:Tr293 prokMSA_id:59695 Borrelia lusitaniae strain:Tr210 AB091821 prokMSA_id:59696 Borrelia afzelii strain:Tr96 prokMSA_id:59697 Borrelia lusitaniae strain:Tr170 AB091820 prokMSA_id:59698 Borrelia lusitaniae strain:Tr161 prokMSA_id:59699 Borrelia lusitaniae strain:Tr213 AB091822 prokMSA_id:59700 Borrelia afzelii strain:Tr38 prokMSA_id:59704 Borrelia valaisiana strain:Tr29 prokMSA_id:59841 Borrelia valaisiana strain:OS3/01 prokMSA_id:59842 Borrelia valaisiana strain:OS66/01 AB091469 prokMSA_id:59843 Borrelia valaisiana strain:OR5/01 AB091463 prokMSA_id:59846 Borrelia valaisiana strain:OC1/01 prokMSA_id:60001 Borrelia valaisiana strain:OS49 prokMSA_id:60002 Borrelia valaisiana strain:OS42 prokMSA_id:60004 Borrelia valaisiana strain:OM58/01 prokMSA_id:60005 Borrelia valaisiana strain:OM50 AB091459 prokMSA_id:60010 Borrelia valaisiana strain:OM43 AB091458 prokMSA_id:66988 Borrelia sp. HN7 AF055417 prokMSA_id:71584 Borrelia valaisiana strain:OM92/01 prokMSA_id:72227 Borrelia valaisiana strain:OS28/01 prokMSA_id:73630 Borrelia sp. I-77 prokMSA_id:74591 Borrelia valaisiana strain:OS31 prokMSA_id:74612 Borrelia garinii strain:N337 AB035398 prokMSA_id:76818 Borrelia lonestari prokMSA_id:79095 Borrelia sp. BC-1 prokMSA_id:79116 Borrelia sp. TXW-1 prokMSA_id:79150 Borrelia sp. MI-8 prokMSA_id:79174 Borrelia sp. SCGT-10 prokMSA_id:79226 Borrelia sp. SCGT-8a prokMSA_id:79244 Borrelia sp. MI-6 prokMSA_id:79303 Borrelia sp. SI-10 prokMSA_id:79357 Borrelia sp. MOK-3a prokMSA_id:79368 Borrelia sp. MOS-1b prokMSA_id:79408 Borrelia sp. MI-9 prokMSA_id:79467 Borrelia sp. FD-1 prokMSA_id:79496 Borrelia sp. AI-1 prokMSA_id:79528 Borrelia sp. MOD-5 prokMSA_id:87237 Borrelia sp. LB-W100 AF529085 prokMSA_id:89055 Borrelia garinii AY129302 prokMSA_id:90093 Borrelia garinii AB111523 prokMSA_id:94239 Borrelia sp. PC-Eq17 AY147008 prokMSA_id:95373 Borrelia sp. IST4 AB111850 prokMSA_id:96034 Borrelia sp. IST4 AB111851 prokMSA_id:96377 Borrelia sp. ISTF1 AB111853 prokMSA_id:96595 Borrelia sp. IST6 AB111852 prokMSA_id:97806 Borrelia sp. ISTF2 AB111854 prokMSA_id:98539 Borrelia sp. IST7 AB111849 2.27.4 LEPTOSPIRA_SUBDIVISION 43 seqs 2.27.4.1 LEPTOSPIRA_GROUP 41 seqs 2.27.4.1.1 LPS.INTERROGANS_SUBGROUP 24 seqs 2.27.4.1.1.6470 OTU 1 seq prokMSA_id:67836 spirochete clone 44a-B1-48 2.27.4.1.1.6480 OTU 2 seqs prokMSA_id:4335 Leptospira fainei str. SSI 5402-98 prokMSA_id:4349 Leptospira fainei str. Hurstbridge 2.27.4.1.1.6496 OTU 16 seqs prokMSA_id:4305 Leptospira santarosai str. Shermani 1342K ATCC 43286 prokMSA_id:4306 Leptospira borgpetersenii str. Hardjo bovis/Sponselee isolat prokMSA_id:4307 Leptospira weilii str. Sarmin isolate WB46 prokMSA_id:4310 Leptospira interrogans str. icterohaemorrhagiae RGA prokMSA_id:4333 Leptospira borgpetersenii str. Moulton serovar canicola prokMSA_id:4342 Leptospira weilii str. Worsfold isolate WA 52 prokMSA_id:4343 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285 prokMSA_id:4344 Leptospira meyeri str. Ranarum ICF ATCC 43287 prokMSA_id:4348 Leptospira borgpetersenii str. Veldrat Bataviae 46 ATCC 4329 prokMSA_id:4351 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285 prokMSA_id:4357 Leptospira noguchii str. Fort Bragg isolate NB36 prokMSA_id:4359 Leptospira kirschneri str. cynopteri 3522 C prokMSA_id:58028 Leptospira interrogans serovar lai str. 56601 chromosome I s prokMSA_id:58029 Leptospira interrogans serovar lai str. 56601 chromosome I s prokMSA_id:58052 Leptospira interrogans serovar lai str. 56601 chromosome I c prokMSA_id:65605 Leptospira weilii strain Ecochallenge 2.27.4.1.1.6512 OTU 3 seqs prokMSA_id:4311 Leptospira borgpetersenii str. 1627 Burgas isolate BD30. U12 prokMSA_id:4346 Leptospira inadai str. lyme ATCC 43289 prokMSA_id:4347 Leptospira noguchii str. Panama CZ 214 ATCC 43288 2.27.4.1.1.6518 OTU 1 seq prokMSA_id:4354 Leptospira santarosai str. LT81 isolate SA39 2.27.4.1.1.6525 OTU 1 seq prokMSA_id:44594 spirochete clone SM2A10 2.27.4.1.2 LPS.BIFLEXA_SUBGROUP 17 seqs 2.27.4.1.2.6616 OTU 17 seqs prokMSA_id:4360 Leptospira sp. str. A-183 prokMSA_id:4361 Leptospira sp. str. A-183. M88721 prokMSA_id:4370 Leptospira biflexa str. Porto prokMSA_id:4372 Leptospira biflexa str. Tororo ATCC 23583. Z26969 prokMSA_id:4373 Leptospira biflexa subsp. Tororo str. mutant 1/1993 prokMSA_id:4374 Leptospira biflexa subsp. Tororo str. mutant 2/1993. Z98592 prokMSA_id:4375 Leptospira biflexa subsp. Tororo str. mutant 2/1994 prokMSA_id:4376 Leptospira biflexa subsp. Tororo str. mutant 3/1993 prokMSA_id:4377 Leptospira biflexa subsp. Tororo str. mutant 3/1994 prokMSA_id:4378 Leptospira biflexa subsp. Tororo str. mutant 6/1993 prokMSA_id:4379 Leptospira biflexa subsp. Tororo str. mutant 6/1994 prokMSA_id:4380 Leptospira biflexa str. Tororo parent strain prokMSA_id:4381 Leptospira biflexa prokMSA_id:4382 Leptospira biflexa prokMSA_id:4383 Leptospira biflexa str. patoc Patoc 1 prokMSA_id:4384 Leptospira wolbachii str. CDC Biflexa ATCC 43284 prokMSA_id:32731 Leptospira meyeri 2.27.4.2 LEPTONEMA_GROUP 2 seqs 2.27.4.2.6539 OTU 2 seqs prokMSA_id:4386 Leptonema illini str. 3055. M88719 prokMSA_id:4396 Leptonema illini str. 3055 2.28 PROTEOBACTERIA 10968 seqs 2.28.1 ALPHA_SUBDIVISION 3235 seqs 2.28.1.1 RDV.SALINARUM_GROUP 4 seqs 2.28.1.1.6715 OTU 1 seq prokMSA_id:4399 Rhodovibrio salinarum NCIMB 2243 2.28.1.1.7204 OTU 1 seq prokMSA_id:78120 alpha clone:Rs-M75 2.28.1.1.7248 OTU 1 seq prokMSA_id:70396 mle1-13 2.28.1.1.7431 OTU 1 seq prokMSA_id:62473 Rhodovibrio sodomensis strain SG3105 2.28.1.2 RHODOPILA_GROUP 189 seqs 2.28.1.2.2 RSC.THIOSULFATOPHILUS_SUBGROUP 1 seq 2.28.1.2.2.7448 OTU 1 seq prokMSA_id:4404 clone LB3-94 2.28.1.2.3 RPL.GLOBIFORMIS_SUBGROUP 39 seqs 2.28.1.2.3.6708 OTU 2 seqs prokMSA_id:39419 Acetobacteraceae clone KL-2-4-8 AF408324 prokMSA_id:77305 Roseomonas sp. SAFR-014 2.28.1.2.3.6783 OTU 2 seqs prokMSA_id:60465 Roseomonas genomospecies 4 prokMSA_id:75114 Roseomonas genomospecies 4 strain ATCC 49959 2.28.1.2.3.6832 OTU 1 seq prokMSA_id:63335 clone RCP2-88 2.28.1.2.3.6834 OTU 1 seq prokMSA_id:63336 clone RCP2-10 2.28.1.2.3.6841 OTU 1 seq prokMSA_id:4410 Rhodopila globiformis str. 7950 DSM 161 2.28.1.2.3.6852 OTU 1 seq prokMSA_id:4412 clone OPT5 2.28.1.2.3.6853 OTU 1 seq prokMSA_id:4413 Paracraurococcus QSSC5-3 str. QSSC5-3 2.28.1.2.3.6856 OTU 1 seq prokMSA_id:4415 Craurococcus roseus str. NS130 2.28.1.2.3.6872 OTU 1 seq prokMSA_id:4417 Acidosphaera rubrifaciens str. HS-AP3 2.28.1.2.3.6992 OTU 2 seqs prokMSA_id:26912 KF-JG30-B12 prokMSA_id:73222 KF-JG30-B10 2.28.1.2.3.7106 OTU 15 seqs prokMSA_id:24986 str. 96446 prokMSA_id:26143 str. 47076 prokMSA_id:55243 Muricoccus roseus prokMSA_id:59735 Roseomonas sp. MDA5527 prokMSA_id:60463 Roseomonas sp. NML94-0193 prokMSA_id:60464 Roseomonas sp. NML97-0121 prokMSA_id:60474 Roseomonas gilardii prokMSA_id:60996 Alpha 1461A prokMSA_id:70407 Roseomonas sp. NML98-0157 prokMSA_id:74557 Roseomonas sp. NML98-0009 AF533358 prokMSA_id:75079 Roseomonas gilardii strain E9464 prokMSA_id:75313 Roseomonas gilardii strain ATCC 49956 prokMSA_id:83064 Roseomonas sp. BON 1 prokMSA_id:85056 Roseomonas gilardii prokMSA_id:92249 Roseomonas sp. 040703/248107A AY360348 2.28.1.2.3.7230 OTU 1 seq prokMSA_id:42326 isolate LMG19505 2.28.1.2.3.7320 OTU 1 seq prokMSA_id:42768 GKS2-218 2.28.1.2.3.7361 OTU 1 seq prokMSA_id:41076 thermal soil clone YNPFFP86 2.28.1.2.3.7377 OTU 1 seq prokMSA_id:81029 alpha clone W2b-8C 2.28.1.2.3.7388 OTU 1 seq prokMSA_id:78172 alpha clone:Rs-H51 2.28.1.2.3.7408 OTU 1 seq prokMSA_id:33392 Acidisphaera sp. NO-15 2.28.1.2.3.7426 OTU 1 seq prokMSA_id:17264 MS5 2.28.1.2.3.7452 OTU 1 seq prokMSA_id:4407 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.28.1.2.3.7500 OTU 2 seqs prokMSA_id:60580 clone B35 prokMSA_id:60590 clone G62 2.28.1.2.3.7610 OTU 1 seq prokMSA_id:40191 KF-JG30-C23 2.28.1.2.4 ABA.ACETI_SUBGROUP 121 seqs 2.28.1.2.4.6637 OTU 23 seqs prokMSA_id:4452 Acetobacter aceti JCM 7641 prokMSA_id:4453 Acetobacter aceti str. SRI1321 prokMSA_id:4469 Acetobacter aceti NCIMB 8621 prokMSA_id:18427 Acetobacter indonesiensis strain:LMG 1571 prokMSA_id:22182 Acetobacter estunensis prokMSA_id:25708 Acetobacter indonesiensis strain:1B-M19D prokMSA_id:25818 Acetobacter orientalis strain:21F-2 prokMSA_id:27422 Acetobacter tropicalis strain:Y-1BM prokMSA_id:29322 Acetobacter cibinongensis strain:4H-1 prokMSA_id:34202 Acetobacter tropicalis strain:NRIC 0312 isolate:No.3 prokMSA_id:34622 Acetobacter tropicalis strain:NRIC 0312 isolate:No.39 prokMSA_id:39658 Acetobacter orientalis strain:1B-M18A prokMSA_id:41554 Acetobacter cibinongensis strain:1BM-18C prokMSA_id:46239 Acetobacter indonesiensis strain:NRIC 0313 AB032356 prokMSA_id:51781 Acetobacter orleanensis prokMSA_id:56023 Acetobacter malorum strain LMG 1746 prokMSA_id:58362 Acetobacter orleanensis strain LMG 1583 prokMSA_id:58364 Acetobacter tropicalis strain LMG 1663 prokMSA_id:58368 Acetobacter cerevisiae strain LMG 1625 prokMSA_id:58369 Acetobacter indonesiensis strain LMG 1588 prokMSA_id:58371 Acetobacter aceti strain LMG 1531 prokMSA_id:58372 Acetobacter estunensis strain LMG 1572 AJ419839 prokMSA_id:58373 Acetobacter estunensis strain LMG 1626 AJ419838 2.28.1.2.4.6662 OTU 7 seqs prokMSA_id:4419 Acetobacter intermedius str. TF2 DSM 11804 prokMSA_id:4454 Gluconacetobacter europaeus str. DES11 DSM 6160 prokMSA_id:4455 Acetobacter europaeus str. JK2 prokMSA_id:4465 Gluconacetobacter xylinus subsp. sucrofermentans str. BPR200 prokMSA_id:4466 Acetobacter ITDI2.1 str. ITDI2.1 prokMSA_id:56605 Gluconacetobacter sp. LMG 1689 prokMSA_id:72244 A.europaeus 2.28.1.2.4.6667 OTU 1 seq prokMSA_id:21795 alpha YNPRH71B 2.28.1.2.4.6766 OTU 1 seq prokMSA_id:4411 DA004 clone vii 2.28.1.2.4.6844 OTU 1 seq prokMSA_id:32348 WD271 clone WD271 2.28.1.2.4.6868 OTU 1 seq prokMSA_id:4457 Gluconobacter asaii IFO 3275 2.28.1.2.4.7065 OTU 1 seq prokMSA_id:44239 WD2108 clone WD2108 2.28.1.2.4.7080 OTU 1 seq prokMSA_id:32874 WD295 clone WD295 2.28.1.2.4.7115 OTU 8 seqs prokMSA_id:4420 Acetobacter sp prokMSA_id:4423 Gluconacetobacter hansenii NCIMB 8746 prokMSA_id:4424 str. IFR101 prokMSA_id:4463 Gluconacetobacter xylinus subsp. xylinus NCIMB 11664 . X7561 prokMSA_id:21095 Gluconacetobacter entanii strain LTH4560 prokMSA_id:70289 A.xylinum X75619 prokMSA_id:71473 A.hansenii prokMSA_id:73040 Acetobacter sp. strain LMG 1582 2.28.1.2.4.7150 OTU 13 seqs prokMSA_id:4429 Gluconacetobacter liquefaciens IFO 12388 prokMSA_id:4430 Gluconacetobacter sacchari str. IF9645 prokMSA_id:4431 Gluconacetobacter sacchari str. IF2-6 prokMSA_id:4432 Gluconacetobacter sacchari str. IF9701 prokMSA_id:4433 Gluconacetobacter sacchari str. SRI1953 prokMSA_id:4435 Gluconacetobacter sacchari str. SRI1853 prokMSA_id:4436 Gluconacetobacter sacchari str. SRI1794 prokMSA_id:4437 Gluconacetobacter sacchari str. SRI1216 prokMSA_id:4438 Gluconacetobacter sacchari str. SRI1230 prokMSA_id:4439 Gluconacetobacter sacchari str. SRI1951 prokMSA_id:4441 Gluconacetobacter liquefaciens str. SRI1994 prokMSA_id:4443 Gluconacetobacter liquefaciens str. SRI1957 prokMSA_id:72097 A.liquefaciens 2.28.1.2.4.7284 OTU 1 seq prokMSA_id:86451 Gluconacetobacter diazotrophicus clone CFN-Cf52 2.28.1.2.4.7414 OTU 1 seq prokMSA_id:4442 Acetobacter sp. str. SRI1939 2.28.1.2.4.7417 OTU 1 seq prokMSA_id:4445 clone WCHB1-87 2.28.1.2.4.7427 OTU 1 seq prokMSA_id:4446 clone DA007 2.28.1.2.4.7430 OTU 1 seq prokMSA_id:4448 str. from 400 mbsl of lake Baikal RUSSIA 2.28.1.2.4.7439 OTU 1 seq prokMSA_id:4440 str. SRI1941 2.28.1.2.4.7456 OTU 1 seq prokMSA_id:82490 Gluconacetobacter diazotrophicus clone 1-05 2.28.1.2.4.7459 OTU 6 seqs prokMSA_id:4462 Gluconacetobacter diazotrophicus str. SRI1990 prokMSA_id:73674 A.diazotrophicus prokMSA_id:83463 Gluconacetobacter diazotrophicus clone UAP-Ac7 prokMSA_id:83645 Gluconacetobacter diazotrophicus clone Psp22 prokMSA_id:85095 Gluconacetobacter diazotrophicus clone UAP-Cf51 prokMSA_id:85491 Gluconacetobacter diazotrophicus clone UAP-Ac10 2.28.1.2.4.7472 OTU 4 seqs prokMSA_id:4427 Gluconobacter oxydans subsp. oxydans DSM 3503 prokMSA_id:4428 Gluconobacter oxydans str. SRI1995 prokMSA_id:72941 Gluconobacter oxydans prokMSA_id:82086 Gluconobacter oxydans strain 39PCAac1 2.28.1.2.4.7529 OTU 10 seqs prokMSA_id:4425 Acetobacter PA2.2 str. PA2.2. AF062474 prokMSA_id:4450 Acetobacter intermedius str. ZIM B025 JKD prokMSA_id:4451 Acetobacter intermedius str. ZIM B025 JK3. AJ012699 prokMSA_id:4467 Acetobacter europaeus str. ZIM B028 V3. AJ012698 prokMSA_id:36976 Acetobacter azotocaptans prokMSA_id:67745 Kozakia baliensis strain:Yo-3 prokMSA_id:67747 Kozakia baliensis strain:Wa-5 prokMSA_id:67750 Kozakia baliensis strain:Ri-1 prokMSA_id:82919 Gluconacetobacter diazotrophicus clone PAl3 prokMSA_id:85459 Gluconacetobacter diazotrophicus clone 4-02 2.28.1.2.4.7565 OTU 1 seq prokMSA_id:21346 clone Tc76 2.28.1.2.4.7600 OTU 35 seqs prokMSA_id:4418 Acetobacter pasteurianus str. LMD 22.1 LMG 1262 prokMSA_id:4421 Acetobacter pomorum str. LTH 2458 DSM 11825 prokMSA_id:4456 Gluconobacter cerinus IFO 3267 prokMSA_id:4464 Gluconobacter frateurii IFO 3264 prokMSA_id:4472 Gluconobacter cerinus prokMSA_id:17998 Halobharath swaminathanianus strain PA 51 prokMSA_id:23292 Acetobacter sp. DOR AF111841 prokMSA_id:27254 Asaia sp. 85 AB025932 prokMSA_id:28635 Gluconobacter cerinus strain:IFO 3276 AB063287 prokMSA_id:30702 Gluconobacter cerinus strain:IAM 1832 AB063288 prokMSA_id:35660 Asaia bogorensis strain:86 AB025929 prokMSA_id:41257 Acetobacter peroxydans prokMSA_id:43353 Gluconobacter cerinus strain:IFO 3267 prokMSA_id:47931 Asaia bogorensis strain:90 AB025931 prokMSA_id:58365 Acetobacter peroxydans strain LMG 1633 prokMSA_id:58366 Acetobacter pomorum strain LMG 18848 prokMSA_id:58367 Acetobacter pasteurianus strain LMG 1629 prokMSA_id:65495 Acetobacter pasteurianus strain:NCI 1193 AB086016 prokMSA_id:87151 Acidomonas methanolica complete strain: TS0143 AB110713 prokMSA_id:87268 Acidomonas methanolica complete strain: TS0128 AB110710 prokMSA_id:87327 Acidomonas methanolica complete strain: TS0145 AB110714 prokMSA_id:87360 Acidomonas methanolica complete strain: TS0114 AB110707 prokMSA_id:87384 Acidomonas methanolica complete strain: TS0117 AB110708 prokMSA_id:87399 Acidomonas methanolica complete strain: TS0135 AB110712 prokMSA_id:87445 Acidomonas methanolica complete strain: LMG1669 AB110704 prokMSA_id:87481 Acidomonas methanolica complete strain: TS0156 AB110715 prokMSA_id:87580 Acidomonas methanolica complete strain: LMG1735 AB110705 prokMSA_id:87641 Acidomonas methanolica complete strain: TS0131 AB110711 prokMSA_id:87665 Acidomonas methanolica complete strain: TS0121 AB110709 prokMSA_id:87740 Acidomonas methanolica complete strain: NRIC0498 AB110702 prokMSA_id:87858 Acidomonas methanolica complete strain: LMG1667 AB110703 prokMSA_id:87902 Acidomonas methanolica complete strain: TS0101 AB110706 prokMSA_id:95258 Asaia krungthepensis strain:AA06 AB102955 prokMSA_id:96639 Asaia krungthepensis strain:AA09 AB102954 prokMSA_id:97066 Asaia krungthepensis strain:AA08 AB102953 2.28.1.2.4.7619 OTU 1 seq prokMSA_id:46484 Acetobacter lovaniensis 2.28.1.2.5 ACDP.CRYPTUM_SUBGROUP 28 seqs 2.28.1.2.5.6779 OTU 2 seqs prokMSA_id:4474 Acidocella facilis str. PW2 ATCC 35904 prokMSA_id:45483 Acidocella sp 2.28.1.2.5.6795 OTU 2 seqs prokMSA_id:22545 Acidocella sp. LGS-3 prokMSA_id:50531 Acidocella sp. WJB-3 2.28.1.2.5.6843 OTU 1 seq prokMSA_id:43037 WD248 clone WD248 2.28.1.2.5.6934 OTU 1 seq prokMSA_id:4475 str. SRS1 2.28.1.2.5.6940 OTU 1 seq prokMSA_id:4478 clone OPB40 2.28.1.2.5.6950 OTU 1 seq prokMSA_id:4479 Acidiphilium acidophilum ATCC 27807 2.28.1.2.5.7027 OTU 1 seq prokMSA_id:70861 Acidocella sp. IS10 2.28.1.2.5.7057 OTU 2 seqs prokMSA_id:4491 Acidocella aminolytica str. 101 JCM 8796 prokMSA_id:4492 Acidocella sp. str. GS19h. X91797 2.28.1.2.5.7066 OTU 1 seq prokMSA_id:39575 Acidocella sp. NO-12 2.28.1.2.5.7092 OTU 14 seqs prokMSA_id:4476 Acidiphilium cryptum str. B-Het4 prokMSA_id:4477 Acidiphilium organovorum ATCC 43141 prokMSA_id:4490 clone cOS6 prokMSA_id:4493 Acidiphilium multivorum AIU 301 prokMSA_id:4495 Acidiphilium multivorum AIU 303 prokMSA_id:4496 Acidiphilium MBIC4287 str. MBIC4287 prokMSA_id:4502 Acidiphilium cryptum ATCC 33463 prokMSA_id:4503 Acidiphilium cryptum str. Kuesel IFV prokMSA_id:4505 Acidiphilium sp. str. GS18h prokMSA_id:28295 Acidiphilium sp. NO-14 prokMSA_id:47077 Acidiphilium sp. SJH prokMSA_id:63337 clone RCP1-78 prokMSA_id:66871 clone M2-70 AY096140 prokMSA_id:72048 Acidiphilium sp. MPH3 2.28.1.2.5.7089 OTU 1 seq prokMSA_id:4497 Acidiphilium sp. str. C-1 2.28.1.2.5.7623 OTU 1 seq prokMSA_id:53994 WD238 clone WD238 2.28.1.4 AZOSPIRILLUM_GROUP 167 seqs 2.28.1.4.1 R.RUBRUM_SUBGROUP 26 seqs 2.28.1.4.1.6717 OTU 3 seqs prokMSA_id:4512 IFO 14922. AB000479 prokMSA_id:4513 IFO 13617. AB000480 prokMSA_id:56046 Aquaspirillum peregrinum subsp. integrum 2.28.1.4.1.6740 OTU 1 seq prokMSA_id:55857 Roseospira marina strain CE2105 2.28.1.4.1.6806 OTU 1 seq prokMSA_id:78030 Roseospira navarrense strain navarrense 2.28.1.4.1.6881 OTU 1 seq prokMSA_id:4509 Rhodospira trueperi 2.28.1.4.1.6976 OTU 2 seqs prokMSA_id:43239 Azospirillum sp. 5C variant 1 prokMSA_id:45811 Azospirillum sp. 5C variant 2 AF413109 2.28.1.4.1.7024 OTU 1 seq prokMSA_id:79281 alpha clone P_wp0211 2.28.1.4.1.7109 OTU 4 seqs prokMSA_id:4514 str. MBIC1474 prokMSA_id:20957 clone 4-Org1-12 prokMSA_id:80090 Marine B-4 prokMSA_id:80223 Marine M-5 2.28.1.4.1.7198 OTU 2 seqs prokMSA_id:4516 Rhodospirillum photometricum str. E-11 prokMSA_id:68790 Rhodospirillum photometricum 2.28.1.4.1.7239 OTU 1 seq prokMSA_id:35557 Thalassospira lucentensis 2.28.1.4.1.7313 OTU 1 seq prokMSA_id:25696 clone 4-Org1-58 2.28.1.4.1.7340 OTU 1 seq prokMSA_id:78776 clone JG30-KF-AS50 2.28.1.4.1.7401 OTU 5 seqs prokMSA_id:18725 clone 4-Org1-59 prokMSA_id:27957 Marine SCRIPPS_94 prokMSA_id:43487 alphaproteobacterium 4alphavs17 strain alphavs17 prokMSA_id:79518 Alpha UMB1A prokMSA_id:85257 Alpha CJ11073 2.28.1.4.1.7573 OTU 1 seq prokMSA_id:77884 Roseospira sp. AT2115 2.28.1.4.1.7628 OTU 2 seqs prokMSA_id:4508 Rhodospirillum rubrum str. ATH 1.1.1; S.1 ATCC 11170 prokMSA_id:4511 Rhodospirillum rubrum 2.28.1.4.2 MAG.GRYPHISWALDENSE_SUBGROUP 40 seqs 2.28.1.4.2.6640 OTU 1 seq prokMSA_id:44956 rape rhizosphere wr0007 2.28.1.4.2.6758 OTU 5 seqs prokMSA_id:33368 rape rhizosphere wr0200 prokMSA_id:58087 Ellin361 AF498743 prokMSA_id:58088 Ellin360 AF498742 prokMSA_id:58109 Ellin333 AF498715 prokMSA_id:75071 alpha clone Sh765B-TzT-31 2.28.1.4.2.6807 OTU 12 seqs prokMSA_id:17960 clone d021 prokMSA_id:21627 clone d157 prokMSA_id:31003 clone d047 prokMSA_id:35285 clone d163 prokMSA_id:36229 clone d088 AF422667 prokMSA_id:39067 clone d155 AF422678 prokMSA_id:40115 clone d033 prokMSA_id:40501 clone d023 prokMSA_id:48292 clone d037 AF422645 prokMSA_id:49057 clone d029 AF422640 prokMSA_id:89350 DSSD44 AY328742 prokMSA_id:90210 DSSD57 AY328755 2.28.1.4.2.6922 OTU 1 seq prokMSA_id:78316 Dechlorospirillum sp. SN1 2.28.1.4.2.6956 OTU 1 seq prokMSA_id:4520 clone HstpL69 2.28.1.4.2.6961 OTU 1 seq prokMSA_id:4523 str. from 400 mbsl of lake Baikal RUSSIA 2.28.1.4.2.6998 OTU 1 seq prokMSA_id:4529 Dechlorospirillum WD str. WD 2.28.1.4.2.7138 OTU 1 seq prokMSA_id:47933 alpha clone SM2D12 2.28.1.4.2.7207 OTU 1 seq prokMSA_id:47123 alpha kpc47rc 2.28.1.4.2.7294 OTU 1 seq prokMSA_id:19497 clone t047 2.28.1.4.2.7400 OTU 1 seq prokMSA_id:77302 K-5b5 2.28.1.4.2.7412 OTU 1 seq prokMSA_id:4535 Phaeospirillum fulvum str. 1360 NCIMB 11762 2.28.1.4.2.7413 OTU 1 seq prokMSA_id:4536 clone HstpL24 2.28.1.4.2.7418 OTU 2 seqs prokMSA_id:4530 Magnetospirillum sp. str. MSM-3 prokMSA_id:4531 Magnetospirillum sp. str. MSM-4 2.28.1.4.2.7424 OTU 1 seq prokMSA_id:4539 unnamed organism 2.28.1.4.2.7561 OTU 7 seqs prokMSA_id:4518 Magnetospirillum magnetotacticum. M58171 prokMSA_id:4519 Magnetospirillum magnetotacticum DSM 3856 . NONE prokMSA_id:4522 Magnetospirillum sp. str. MSM-6 prokMSA_id:4524 Magnetospirillum magnetotacticum DSM 3856 . Y10110 prokMSA_id:4525 Magnetospirillum sp. str. AMB-1 prokMSA_id:4526 Magnetospirillum sp. str. MGT-1 prokMSA_id:35227 Phenol-degrading denitrifying spirillum CC-26 2.28.1.4.2.7632 OTU 1 seq prokMSA_id:37406 WD229 clone WD229 2.28.1.4.2.7652 OTU 1 seq prokMSA_id:27559 alpha clone pA419 2.28.1.4.4 AZS.LIPOFERUM_SUBGROUP 101 seqs 2.28.1.4.4.6626 OTU 1 seq prokMSA_id:30490 WD2103 clone WD2103 2.28.1.4.4.6687 OTU 1 seq prokMSA_id:42220 Azospirillum sp. B510 2.28.1.4.4.6685 OTU 2 seqs prokMSA_id:25178 Alpha MA2802 prokMSA_id:32446 alpha MA2801 2.28.1.4.4.6694 OTU 1 seq prokMSA_id:56033 clone RCP2-92 2.28.1.4.4.6698 OTU 3 seqs prokMSA_id:4584 clone OCS24 prokMSA_id:4585 clone OM25 prokMSA_id:68995 EBAC37G09 ; tRNA-Ile complete ; and 23S 2.28.1.4.4.6703 OTU 2 seqs prokMSA_id:23291 Alpha strain 15158 prokMSA_id:91865 Alpha PX3.14 AY337602 2.28.1.4.4.6710 OTU 2 seqs prokMSA_id:4573 clone OM38 prokMSA_id:17396 alpha clone Arctic96A-18 2.28.1.4.4.6732 OTU 1 seq prokMSA_id:58862 UNSW7 2.28.1.4.4.6776 OTU 1 seq prokMSA_id:83629 clone CCU22 2.28.1.4.4.6851 OTU 1 seq prokMSA_id:59903 alpha clone ccspost211 2.28.1.4.4.6863 OTU 1 seq prokMSA_id:50973 Green Bay ferromanganous micronodule MNG3 2.28.1.4.4.6869 OTU 1 seq prokMSA_id:63342 Azospirillum sp. Mat2-1a 2.28.1.4.4.6900 OTU 1 seq prokMSA_id:81336 alpha clone: Rs-070 2.28.1.4.4.6905 OTU 1 seq prokMSA_id:34409 Alpha SOGA19 2.28.1.4.4.6918 OTU 4 seqs prokMSA_id:63269 clone FW93 prokMSA_id:76700 alpha clone JG37-AG-11 AJ518764 prokMSA_id:78724 alpha clone JG30-KF-C3 prokMSA_id:93769 alpha clone KCM-C-45 AJ581616 2.28.1.4.4.6959 OTU 2 seqs prokMSA_id:4589 Rhodocista centenaria IAM 14193 . D12701 prokMSA_id:69358 Rhodocista pekingense 2.28.1.4.4.6990 OTU 1 seq prokMSA_id:25641 sludge A3 2.28.1.4.4.6993 OTU 1 seq prokMSA_id:4574 clone OM75 2.28.1.4.4.6997 OTU 1 seq prokMSA_id:25464 Elbe River snow isolate Iso40 2.28.1.4.4.7028 OTU 1 seq prokMSA_id:55487 clone FW51 2.28.1.4.4.7058 OTU 1 seq prokMSA_id:4586 Azospirillum TTI str. TTI 2.28.1.4.4.7123 OTU 4 seqs prokMSA_id:75429 alpha clone JG36-TzT-23 prokMSA_id:75684 alpha clone JG36-TzT-195 prokMSA_id:76590 alpha clone JG37-AG-20 prokMSA_id:76595 alpha clone JG37-AG-102 AJ518774 2.28.1.4.4.7137 OTU 2 seqs prokMSA_id:4575 str. HD-1 prokMSA_id:79172 clone I13 2.28.1.4.4.7148 OTU 2 seqs prokMSA_id:45257 thermal soil clone YNPFFP57 prokMSA_id:45882 thermal soil clone YNPFFP3 AF391979 2.28.1.4.4.7159 OTU 1 seq prokMSA_id:24244 Endosymbiont of Acanthamoeba sp. UWC9 2.28.1.4.4.7157 OTU 2 seqs prokMSA_id:60700 alpha clone ASL45 prokMSA_id:74301 alpha clone ASL6 2.28.1.4.4.7163 OTU 1 seq prokMSA_id:70400 clone 49525 2.28.1.4.4.7175 OTU 26 seqs prokMSA_id:16678 alpha HOC43 prokMSA_id:17000 alpha HOC48 AB054182 prokMSA_id:20547 alpha HOC42 prokMSA_id:21146 alpha HOC4 prokMSA_id:22043 alpha HOC44 prokMSA_id:22342 alpha HOC6 AB054140 prokMSA_id:23317 alpha HOC24 prokMSA_id:24176 alpha HOC32 AB054166 prokMSA_id:24637 alpha HOC8 prokMSA_id:26396 alpha HOC17 AB054151 prokMSA_id:26958 alpha HOC26 prokMSA_id:31227 alpha HOC7 prokMSA_id:34613 alpha HOC10 prokMSA_id:36213 alpha HOC20 AB054154 prokMSA_id:36320 alpha HOC45 prokMSA_id:36723 alpha HOC13 prokMSA_id:40299 alpha HOC18 AB054152 prokMSA_id:40336 alpha HOC16 prokMSA_id:41079 alpha HOC19 prokMSA_id:42614 alpha HOC15 AB054149 prokMSA_id:43501 alpha HOC14 prokMSA_id:45239 alpha HOC30 AB054164 prokMSA_id:45712 alpha HOC35 prokMSA_id:49588 alpha HOC1 AB054135 prokMSA_id:49607 alpha HOC11 prokMSA_id:51928 alpha HOC9 AB054143 2.28.1.4.4.7171 OTU 2 seqs prokMSA_id:4549 Azospirillum sp. str. 4 AZ DSM 4834 prokMSA_id:4555 Azospirillum sp. str. 5 AZ DSM 4835 2.28.1.4.4.7179 OTU 1 seq prokMSA_id:46623 clone d064 2.28.1.4.4.7200 OTU 1 seq prokMSA_id:32545 isolate HRV35 2.28.1.4.4.7222 OTU 1 seq prokMSA_id:60574 clone B79 2.28.1.4.4.7307 OTU 1 seq prokMSA_id:50928 alpha kpj324rc 2.28.1.4.4.7387 OTU 1 seq prokMSA_id:28753 alpha KEppib19 2.28.1.4.4.7464 OTU 1 seq prokMSA_id:4545 Azospirillum irakense str. KBC1 2.28.1.4.4.7467 OTU 1 seq prokMSA_id:4546 Azospirillum sp. str. ASP-1 2.28.1.4.4.7469 OTU 1 seq prokMSA_id:4547 Azospirillum amazonense str. Y-1 DSM 2787 2.28.1.4.4.7475 OTU 1 seq prokMSA_id:4548 unnamed organism 2.28.1.4.4.7496 OTU 1 seq prokMSA_id:4550 clone HstpL36 2.28.1.4.4.7507 OTU 1 seq prokMSA_id:4552 Azospirillum sp. str. 137/5 2.28.1.4.4.7503 OTU 1 seq prokMSA_id:4551 Trojanella thessalonices str. L13 2.28.1.4.4.7510 OTU 5 seqs prokMSA_id:4583 clone OCS28 prokMSA_id:68978 alpha MB13G10 ; tRNA-Ile complete ; and 23S prokMSA_id:68980 alpha MB12F11 ; tRNA-Ile complete ; and 23S prokMSA_id:68981 alpha MB12C06 ; tRNA-Ile complete ; and 23S prokMSA_id:68991 alpha MB11B10 ; tRNA-Ile complete ; and 23S 2.28.1.4.4.7516 OTU 1 seq prokMSA_id:4554 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.28.1.4.4.7521 OTU 1 seq prokMSA_id:32841 Defluvicoccus vanus 2.28.1.4.4.7519 OTU 1 seq prokMSA_id:72555 alpha CHAB-III-8 5' 2.28.1.4.4.7538 OTU 1 seq prokMSA_id:33613 alpha YNPRH85B 2.28.1.4.4.7539 OTU 2 seqs prokMSA_id:77815 Rhodocista sp. AT2107 prokMSA_id:78339 Rhodocista sp. AR2107 2.28.1.4.4.7551 OTU 1 seq prokMSA_id:52333 alpha MERTZ_2CM_62 2.28.1.4.4.7559 OTU 1 seq prokMSA_id:36094 alpha ARCT1-17 2.28.1.4.4.7563 OTU 1 seq prokMSA_id:41918 Azospirillum sp. B52 2.28.1.4.4.7575 OTU 2 seqs prokMSA_id:75527 alpha clone JG37-AG-119 AJ518777 prokMSA_id:75660 alpha clone JG37-AG-79 2.28.1.4.4.7616 OTU 1 seq prokMSA_id:45099 alpha clone BIxi22 2.28.1.4.4.7644 OTU 1 seq prokMSA_id:78233 alpha clone:Rs-D39 2.28.1.4.4.7647 OTU 1 seq prokMSA_id:76633 alpha clone GuBH2-AD-23 2.28.1.5 OSP.PUSILLUM_GROUP 3 seqs 2.28.1.5.7088 OTU 1 seq prokMSA_id:32879 alpha MERTZ_2CM_305a 2.28.1.5.7119 OTU 1 seq prokMSA_id:4594 Oceanospirillum pusillum IFO 13613 2.28.1.5.7177 OTU 1 seq prokMSA_id:19713 marine 2.28.1.6 RHIZOBIUM-AGROBACTERIUM_GROUP 1382 seqs 2.28.1.6.1 STA.STELLULATA_SUBGROUP 35 seqs 2.28.1.6.1.6672 OTU 1 seq prokMSA_id:45402 Marine SE83 2.28.1.6.1.6726 OTU 1 seq prokMSA_id:74769 Alpha AP-20 2.28.1.6.1.6912 OTU 9 seqs prokMSA_id:26810 Achromobacter sp. LMG5410 prokMSA_id:31969 alpha isolate C6/8 AJ314748 prokMSA_id:39707 alpha isolate C6/17 AJ314749 prokMSA_id:47270 Alpha C6-19 isolate C6-19 AJ400704 prokMSA_id:70672 Achromobacter sp. LMG5431 prokMSA_id:72136 Achromobacter sp. LMG5430 prokMSA_id:74042 Achromobacter sp. LMG5411 prokMSA_id:76483 MF_clone_123 prokMSA_id:90998 K56 AY345464 2.28.1.6.1.6920 OTU 4 seqs prokMSA_id:4601 str. MBIC3368 prokMSA_id:27269 Alpha NW001 prokMSA_id:36381 Alpha MBIC3368 prokMSA_id:60397 Alpha LA33B 2.28.1.6.1.6954 OTU 3 seqs prokMSA_id:31584 Paracoccus sp. isolate PRLISY02 prokMSA_id:35391 Bartonella sp. isolate PRLIST01 prokMSA_id:41538 isolate PRLIST07 2.28.1.6.1.6952 OTU 3 seqs prokMSA_id:4600 str. MBIC3366. AB012760 prokMSA_id:4608 str. MBIC3865. AB015896 prokMSA_id:53790 Alpha kbc11 2.28.1.6.1.7107 OTU 10 seqs prokMSA_id:4599 str. MBIC3993 prokMSA_id:4604 Agrobacterium stellulatum IAM 12614 prokMSA_id:4606 unnamed organism -- macronuclear prokMSA_id:4607 unnamed organism -- macronuclear prokMSA_id:4610 str. MBIC1535 prokMSA_id:42788 Crassostrea virginica symbiont CV902-700 prokMSA_id:70630 Unknown marine alpha JP22.1 prokMSA_id:82237 Agrobacterium sp. SP25 prokMSA_id:88655 Stappia sp. M8 AY307927 prokMSA_id:91003 K2-26 AY345441 2.28.1.6.1.7583 OTU 4 seqs prokMSA_id:4598 Stappia stellulata IAM 12621 prokMSA_id:4603 str. PTB-5 prokMSA_id:4605 unnamed organism -- macronuclear prokMSA_id:4609 str. HTB015. AB010864 2.28.1.6.2 HYP.DENITRIFICANS_SUBGROUP 33 seqs 2.28.1.6.2.6978 OTU 1 seq prokMSA_id:4613 clone HstpL31 2.28.1.6.2.7001 OTU 1 seq prokMSA_id:4616 str. JTB131 2.28.1.6.2.7012 OTU 2 seqs prokMSA_id:21263 alpha MERTZ_21CM_88 prokMSA_id:48953 alpha MERTZ_0CM_183 2.28.1.6.2.7170 OTU 1 seq prokMSA_id:46020 Alpha A0839 2.28.1.6.2.7209 OTU 1 seq prokMSA_id:49373 alpha MERTZ_21CM_114 2.28.1.6.2.7226 OTU 1 seq prokMSA_id:84103 clone CCM16b 2.28.1.6.2.7306 OTU 1 seq prokMSA_id:26724 clone LO13.3 2.28.1.6.2.7389 OTU 5 seqs prokMSA_id:4611 Pedomicrobium americanum ACM 3090 prokMSA_id:4612 Pedomicrobium australicum IFAM ST-1306 prokMSA_id:4614 Pedomicrobium australicum IFAM WD1355 prokMSA_id:4615 Pedomicrobium sp. ACM 3067 prokMSA_id:4618 Pedomicrobium ferrugineum ACM 3037 2.28.1.6.2.7422 OTU 1 seq prokMSA_id:28949 clone 49512 2.28.1.6.2.7428 OTU 2 seqs prokMSA_id:4624 clone 4953 prokMSA_id:50436 clone 49518 AF097812 2.28.1.6.2.7473 OTU 1 seq prokMSA_id:56510 clone a13111 2.28.1.6.2.7479 OTU 1 seq prokMSA_id:47454 Hyphomicrobium sp. CM2 2.28.1.6.2.7487 OTU 1 seq prokMSA_id:23276 Green Bay ferromanganous micronodule MNH2 2.28.1.6.2.7641 OTU 14 seqs prokMSA_id:4620 Hyphomicrobium M3 str. M3 ATCC 202122 prokMSA_id:4621 Hyphomicrobium facile subsp. tolerans IFAM I-551 . Y14311 prokMSA_id:4622 Hyphomicrobium facile subsp. facile IFAM H-526 . Y14309 prokMSA_id:4623 Hyphomicrobium facilis IFAM B522. Y14312 prokMSA_id:4625 Hyphomicrobium facile subsp. ureaphilum IFAM CO-582 . Y14310 prokMSA_id:4626 Hyphomicrobium methylovorum str. MBIC3196 prokMSA_id:4627 Hyphomicrobium methylovorum str. KM-146 DSM 5458 prokMSA_id:25781 Hyphomicrobium sp. S3 AF279788 prokMSA_id:27497 Pietermaritzburg Y17-2 prokMSA_id:31209 Hyphomicrobium sp. P2 AF148858 prokMSA_id:40973 Hyphomicrobium sp. S4 AF279789 prokMSA_id:45287 Hyphomicrobium sp. HM prokMSA_id:68656 clone KRA30-08 prokMSA_id:79050 alpha clone JG30-KF-C30 AJ536858 2.28.1.6.3 HYP.ZAVARZINII_SUBGROUP 74 seqs 2.28.1.6.3.7167 OTU 1 seq prokMSA_id:32066 alpha MERTZ_0CM_99 2.28.1.6.3.7409 OTU 1 seq prokMSA_id:41463 clone 1956 2.28.1.6.3.7447 OTU 1 seq prokMSA_id:34344 Hyphomicrobium vulgare part 2.28.1.6.3.7506 OTU 1 seq prokMSA_id:4639 clone 1951 2.28.1.6.3.7505 OTU 1 seq prokMSA_id:4638 Pedomicrobium fusiforme DSM 5304 2.28.1.6.3.7530 OTU 1 seq prokMSA_id:4640 clone 49520 2.28.1.6.3.7646 OTU 68 seqs prokMSA_id:4630 Hyphomicrobium hollandicum IFAM KB-677 prokMSA_id:4632 Hyphomicrobium zavarzinii IFAM ZV-622 prokMSA_id:4633 Hyphomicrobium W1-1B str. W1-1B prokMSA_id:4634 Hyphomicrobium zavarzinii ATCC 27495 prokMSA_id:4635 Hyphomicrobium aestuarii DSM 1564 prokMSA_id:4636 Hyphomicrobium vulgare str. MC-750 IFAM MC-750 prokMSA_id:4637 Hyphomicrobium zavarzinii str. ZV-580 prokMSA_id:4641 str. US-353 prokMSA_id:34544 sludge A39 prokMSA_id:48462 Hyphomicrobium sp. SAN-1 prokMSA_id:75991 MF_clone_16 prokMSA_id:88141 HOClCi23 AY328572 prokMSA_id:88156 DSSF45 AY328667 prokMSA_id:88254 DSSF11 AY328634 prokMSA_id:88268 DSSF74 AY328696 prokMSA_id:88276 DSSF61 AY328683 prokMSA_id:88295 DSSF71 AY328693 prokMSA_id:88300 DSSF76 AY328698 prokMSA_id:88334 DSSF36 AY328658 prokMSA_id:88439 DSSF9 AY328632 prokMSA_id:88523 DSSF24 AY328647 prokMSA_id:88718 DSSF43 AY328665 prokMSA_id:88787 DSSF50 AY328672 prokMSA_id:88837 DSSF29 AY328651 prokMSA_id:88846 DSSF33 AY328655 prokMSA_id:88869 DSSF13 AY328636 prokMSA_id:88935 DSSF75 AY328697 prokMSA_id:88983 DSSF46 AY328668 prokMSA_id:89077 DSSF38 AY328660 prokMSA_id:89164 DSSF12 AY328635 prokMSA_id:89239 DSSF30 AY328652 prokMSA_id:89275 DSSF58 AY328680 prokMSA_id:89315 DSSF4 AY328627 prokMSA_id:89336 HOClCi41 AY328590 prokMSA_id:89363 DSSF15 AY328638 prokMSA_id:89368 DSSF44 AY328666 prokMSA_id:89378 DSSF34 AY328656 prokMSA_id:89425 DSSF77 AY328699 prokMSA_id:89450 DSSF65 AY328687 prokMSA_id:89523 DSSF20 AY328643 prokMSA_id:89575 DSSF2 AY328625 prokMSA_id:89587 DSSF32 AY328654 prokMSA_id:89614 DSSF42 AY328664 prokMSA_id:89634 DSSF25 AY328648 prokMSA_id:89675 DSSF78 AY328700 prokMSA_id:89720 DSSF37 AY328659 prokMSA_id:89808 DSSF22 AY328645 prokMSA_id:89847 HOClCi18 AY328567 prokMSA_id:89989 DSSF67 AY328689 prokMSA_id:90155 DSSF48 AY328670 prokMSA_id:90179 DSSF19 AY328642 prokMSA_id:90261 DSSF54 AY328676 prokMSA_id:90264 DSSF3 AY328626 prokMSA_id:90267 DSSF27 AY328650 prokMSA_id:90330 DSSF10 AY328633 prokMSA_id:90337 DSSF64 AY328686 prokMSA_id:90374 DSSF49 AY328671 prokMSA_id:90460 DSSF40 AY328662 prokMSA_id:90517 DSSF41 AY328663 prokMSA_id:90622 HOClCi37 AY328586 prokMSA_id:90632 DSSF73 AY328695 prokMSA_id:90671 DSSF1 AY328624 prokMSA_id:90687 DSSF35 AY328657 prokMSA_id:90705 DSSF68 AY328690 prokMSA_id:90717 DSSF6 AY328629 prokMSA_id:90732 DSSF62 AY328684 prokMSA_id:90757 DSSF47 AY328669 prokMSA_id:97510 clone mv13.4 AY424825 2.28.1.6.6 RM.VANNIELII_SUBGROUP 1 seq 2.28.1.6.6.7005 OTU 1 seq prokMSA_id:51312 sludge S43 2.28.1.6.7 MPI.CAPSULATA 1 seq 2.28.1.6.7.7558 OTU 1 seq prokMSA_id:4647 Methylopila capsulata str. IM1 VKM B-1606 2.28.1.6.8 BL.VIRIDIS_ASSEMBLAGE 193 seqs 2.28.1.6.8.6638 OTU 7 seqs prokMSA_id:4651 str. TA1-AE1 prokMSA_id:4652 str. TA12-21 prokMSA_id:4653 str. TA1-A1 prokMSA_id:17276 Ancylobacter sp. AS1.1761 prokMSA_id:81693 Ancylobacter sp. DSM 2457 prokMSA_id:81868 Ancylobacter sp. DSM 1277 AY211515 prokMSA_id:82106 Ancylobacter sp. DSM 1107 2.28.1.6.8.6635 OTU 4 seqs prokMSA_id:44127 gold mine D33 AF337887 prokMSA_id:54630 Green Bay ferromanganous micronodule MNG7 AF292997 prokMSA_id:75443 alpha clone JG34-KF-416 prokMSA_id:76050 alpha clone GuBH2-AD-10 AJ519651 2.28.1.6.8.6651 OTU 76 seqs prokMSA_id:4681 unnamed organism. AF165267 prokMSA_id:4699 Rhodopseudomonas sp. str. ANT-P-1. D14428 prokMSA_id:4706 Rhodoplanes roseus str. 941 DSM 5909 . D14429 prokMSA_id:4707 Rhodopseudomonas sp. str. IL-245. D15063 prokMSA_id:4743 Methylosinus LW2 str. LW2. AF150786 prokMSA_id:4744 Methylosinus Methylosinus pAMC459. AF150781 prokMSA_id:4745 Methylosinus Methylosinus pAMC451. AF150780 prokMSA_id:4746 Methylosinus Methylosinus pAMC447. AF150779 prokMSA_id:4755 Methylocystis EB-1 str. EB-1. AB015608 prokMSA_id:4759 Beijerinckia indica subsp. indica ATCC 9039 . M59060 prokMSA_id:18709 clone SL14 AF379689 prokMSA_id:18717 Uni-MO2 AF283238 prokMSA_id:20054 clone LO13.9 AF358023 prokMSA_id:21038 1204-53l AJ289931 prokMSA_id:27605 clone 4404-8 AJ007647 prokMSA_id:43530 GKS2-215 AJ290032 prokMSA_id:47357 alpha clone ACK-M37 U85157 prokMSA_id:48693 alpha clone ACK-DE48 U85161 prokMSA_id:50497 II methanotroph metano-II AB040501 prokMSA_id:52053 Green Bay ferromanganous micronodule MNF4 AF292996 prokMSA_id:53533 clone:BCf3-20 AB062817 prokMSA_id:54326 clone LO13.19 AF358011 prokMSA_id:56291 Methylosinus sporium strain 44/2 AJ458468 prokMSA_id:58401 Methylosinus trichosporium AB008108 prokMSA_id:60583 clone B15 AF407716 prokMSA_id:61179 clone EOH1 AY080923 prokMSA_id:63268 clone FW8 AF523952 prokMSA_id:63270 clone FW91 AF523949 prokMSA_id:63274 clone FW138 AF523948 prokMSA_id:70100 Alpha AP-12 prokMSA_id:71224 Methylosinus sporium strain 8 AJ458486 prokMSA_id:71647 Alpha AP-16 prokMSA_id:74080 clone 1_32_322 AJ437459 prokMSA_id:74895 RO_isolate_11 AY159207 prokMSA_id:74901 alpha clone JG37-AG-53 AJ518770 prokMSA_id:74952 alpha clone JG36-TzT-166 prokMSA_id:74986 alpha clone JG37-AG-1 AJ518761 prokMSA_id:75138 alpha clone JG34-KF-211 prokMSA_id:75557 alpha clone JG37-AG-3 AJ518762 prokMSA_id:76270 alpha clone JG37-AG-26 AJ518768 prokMSA_id:80390 alpha clone W2b-2G AY192247 prokMSA_id:80727 alpha clone P3-3A AY192258 prokMSA_id:80921 alpha clone S2-1D AY192262 prokMSA_id:89125 HOClCi39 AY328588 prokMSA_id:93584 alpha clone JG36-GS-46 AJ582029 prokMSA_id:94332 Methylocystis sp. clone 17E-T2R21 AY203771 prokMSA_id:94382 Methylocystaceae clone 9E-T2C14 AY203750 prokMSA_id:94469 Methylocystis sp. clone 9E-T2A1 AY203755 prokMSA_id:94497 Methylocystis sp. clone 112nGW-T2H310 AY203777 prokMSA_id:94512 Methylocystis sp. clone 9E-T2C31 AY203756 prokMSA_id:94537 II methanotroph clone 8nGW-T2B122 AY203781 prokMSA_id:94586 II methanotroph clone 8nGW-T2G134 AY203753 prokMSA_id:94641 Methylocystis sp. clone 112E-T2B39 AY203773 prokMSA_id:94652 Methylocystis sp. clone 112nGW-T2K307 AY203778 prokMSA_id:94676 Methylocystis sp. clone 17nGW-T2M251 AY203770 prokMSA_id:94685 Methylocystis sp. clone 8nGW-T2E116 AY203758 prokMSA_id:94708 II methanotroph clone 8nGW-T2B108 AY203752 prokMSA_id:94719 Methylocystis sp. clone 112E-T2A12 AY203772 prokMSA_id:94742 Methylocystis sp. clone 17nGW-T2A201 AY203765 prokMSA_id:94773 Methylocystis sp. clone 112E-T2V21 AY203779 prokMSA_id:94813 II methanotroph clone 8nGW-T2X105 AY203754 prokMSA_id:94896 Methylocystis sp. clone 112E-T2D18 AY203775 prokMSA_id:94903 Methylocystis sp. clone 17nGW-T2F217 AY203767 prokMSA_id:94968 Methylocystaceae clone 9E-T2B14 AY203749 prokMSA_id:94988 Methylocystis sp. clone 17E-T2A11 AY203764 prokMSA_id:95043 Methylocystis sp. clone 17nGW-T2E208 AY203766 prokMSA_id:95051 Methylocystis sp. clone 112nGW-T2C325 AY203774 prokMSA_id:95081 Methylocystis sp. clone 17nGW-T2H214 AY203769 prokMSA_id:95085 Methylocystis sp. clone 8E-T2A1 AY203757 prokMSA_id:95124 Methylocystis sp. clone 8GW-T2FF27 AY203763 prokMSA_id:95138 Methylocystis sp. clone 112E-T2E5 AY203776 prokMSA_id:95139 Methylocystis sp. clone 8nGW-T2I132 AY203759 prokMSA_id:95155 Methylocystis sp. clone 8nGW-T2Q133 AY203760 prokMSA_id:95173 Methylocystis sp. clone 8nGW-T2R128 AY203761 prokMSA_id:95372 clone mv13.6 AY424827 prokMSA_id:97561 Alpha Shinshu-th1 AB121772 2.28.1.6.8.6660 OTU 18 seqs prokMSA_id:4671 Xanthobacter flavus str. 301. X94199 prokMSA_id:4672 str. TV6-2b prokMSA_id:4673 Xanthobacter flavus str. H4-14. X94202 prokMSA_id:4674 Xanthobacter flavus str. JW/KR-1. X94204 prokMSA_id:4675 Xanthobacter flavus str. JW/KR-2. X94205 prokMSA_id:4676 Xanthobacter flavus str. JW/KR-E1. X94206 prokMSA_id:4700 Xanthobacter tagetidis str. TagT2C. X99469 prokMSA_id:4701 str. Z2A-6A. AJ224615 prokMSA_id:4702 str. Z4A-2 prokMSA_id:4704 Azorhizobium caulinodans str. MAR 1568 ORS 571 prokMSA_id:4708 Azorhizobium caulinodans str. MAR 1568 ORS 571 prokMSA_id:4730 Azorhizobium caulinodans str. MAR 1568 LMG 6465 . X67221 prokMSA_id:22038 Xanthobacter sp. MN 45.1 isolate MN 45.1 AJ313028 prokMSA_id:60723 Monochloroacetic-acid-degrading MCAA1 AF532187 prokMSA_id:62751 Xanthobacter aminooxidans AF399969 prokMSA_id:68682 Xanthobacter sp. INA43/2-2 strain INA43/2-2 prokMSA_id:86452 Xanthobacter sp. 127W prokMSA_id:90457 Xanthobacter sp. COX AY307925 2.28.1.6.8.6670 OTU 1 seq prokMSA_id:65463 clone a13115 2.28.1.6.8.6707 OTU 1 seq prokMSA_id:32314 Chelatococcus asaccharovorans strain TE2 2.28.1.6.8.6711 OTU 1 seq prokMSA_id:82197 Corbulabacter subterraneus 2.28.1.6.8.6738 OTU 1 seq prokMSA_id:55851 clone HP1B78 2.28.1.6.8.6756 OTU 1 seq prokMSA_id:79124 clone csbio160325 2.28.1.6.8.6780 OTU 1 seq prokMSA_id:34088 rape rhizosphere wr0197 2.28.1.6.8.6787 OTU 1 seq prokMSA_id:48622 MHP14 2.28.1.6.8.6801 OTU 1 seq prokMSA_id:4703 Azorhizobium caulinodans 2.28.1.6.8.6822 OTU 1 seq prokMSA_id:4694 Blastochloris viridis str. G11 2.28.1.6.8.6826 OTU 1 seq prokMSA_id:4721 clone DA122 2.28.1.6.8.6836 OTU 1 seq prokMSA_id:63338 clone RCP1-19 2.28.1.6.8.6845 OTU 1 seq prokMSA_id:49637 Alpha A0838 2.28.1.6.8.6855 OTU 1 seq prokMSA_id:43219 Alpha 76712 2.28.1.6.8.6938 OTU 1 seq prokMSA_id:20272 Metal-contaminated soil clone K20-82 2.28.1.6.8.6945 OTU 1 seq prokMSA_id:74124 Rhizobiales str. A48 2.28.1.6.8.6943 OTU 1 seq prokMSA_id:63879 Rhodoplanes sp. HA17 complete 2.28.1.6.8.6969 OTU 1 seq prokMSA_id:29743 Metal-contaminated soil clone K20-01 2.28.1.6.8.6970 OTU 1 seq prokMSA_id:47562 Rhizosphere soil clone RSC-II-82 2.28.1.6.8.6971 OTU 1 seq prokMSA_id:79071 Thiobacillus sp. 104 2.28.1.6.8.7017 OTU 2 seqs prokMSA_id:4661 Thiobacillus novellus IAM 12100 prokMSA_id:38794 Rhizobium sp. SDW045 AF345551 2.28.1.6.8.7023 OTU 1 seq prokMSA_id:4663 Xanthobacter agilis str. SA35 2.28.1.6.8.7030 OTU 2 seqs prokMSA_id:34126 Rhizosphere soil clone RSC-II-90 prokMSA_id:38212 Rhizosphere soil clone RSC-II-84 2.28.1.6.8.7067 OTU 13 seqs prokMSA_id:4664 Blastochloris viridis ATCC 19567 prokMSA_id:4687 Blastochloris viridis ATCC 19567 prokMSA_id:4688 Blastochloris viridis DSM 133 prokMSA_id:4689 Blastochloris viridis str. UN prokMSA_id:4691 Blastochloris viridis str. G3 prokMSA_id:4710 Blastochloris sulfoviridis DSM 729 prokMSA_id:4711 Blastochloris sulfoviridis str. ToP1 prokMSA_id:4712 Blastochloris viridis str. GI prokMSA_id:39566 Blastochloris sulfoviridis AB033757 prokMSA_id:63558 Blastochloris sulfoviridis strain OK3G7 prokMSA_id:63559 Blastochloris sulfoviridis strain Wai1bG3 prokMSA_id:63562 Blastochloris sulfoviridis strain Wai3G1e prokMSA_id:78031 Blastochloris sp. AT2101 2.28.1.6.8.7076 OTU 4 seqs prokMSA_id:4666 Blastochloris viridis str. G8 prokMSA_id:4668 Blastochloris viridis str. B4 prokMSA_id:4692 Blastochloris viridis str. G5 prokMSA_id:4697 Blastochloris viridis str. B9 2.28.1.6.8.7074 OTU 3 seqs prokMSA_id:4715 unnamed organism. AF007948 prokMSA_id:35018 Alpha 34619 prokMSA_id:36327 Alpha F0723 2.28.1.6.8.7101 OTU 2 seqs prokMSA_id:4695 Blastochloris viridis str. G12 prokMSA_id:4696 Blastochloris viridis str. B5 2.28.1.6.8.7141 OTU 2 seqs prokMSA_id:4719 Rhodoplanes Wai3R3 str. Wai3R3 prokMSA_id:70971 Rhodoplanes elegans 2.28.1.6.8.7144 OTU 2 seqs prokMSA_id:4716 clone M29 prokMSA_id:4717 clone P57 2.28.1.6.8.7194 OTU 1 seq prokMSA_id:58086 Ellin362 2.28.1.6.8.7213 OTU 2 seqs prokMSA_id:40238 clone Tc42 prokMSA_id:48489 clone Tc35 2.28.1.6.8.7228 OTU 2 seqs prokMSA_id:21706 KF-JG30-B3 prokMSA_id:63277 clone FW96 2.28.1.6.8.7244 OTU 1 seq prokMSA_id:4714 clone WCHB1-55 2.28.1.6.8.7261 OTU 1 seq prokMSA_id:4718 Rhodoplanes Tok2tar1 str. Tok2tar1 2.28.1.6.8.7264 OTU 1 seq prokMSA_id:66234 Bosea thiooxidans isolate TJ1 2.28.1.6.8.7275 OTU 1 seq prokMSA_id:83531 clone CCU18 2.28.1.6.8.7283 OTU 1 seq prokMSA_id:4722 Methylorhabdus multivorans str. DM13 VKM B-2030 2.28.1.6.8.7295 OTU 1 seq prokMSA_id:64597 alpha clone 1557 2.28.1.6.8.7337 OTU 11 seqs prokMSA_id:23394 soil clone S139 AY037644 prokMSA_id:30114 earthworm cast clone C156 AY037758 prokMSA_id:31892 earthworm cast clone C062 AY037712 prokMSA_id:36311 clone Tc99 AF445156 prokMSA_id:41548 clone Tc91 AF445149 prokMSA_id:42429 clone Tc38 AF445104 prokMSA_id:44875 Rhizosphere soil clone RSC-II-17 prokMSA_id:46714 clone Tc72 AF445132 prokMSA_id:48161 clone Tc52 AF445116 prokMSA_id:85332 soil clone Tc132-50 AY242678 prokMSA_id:85348 soil clone Tc129-17 AY242673 2.28.1.6.8.7339 OTU 1 seq prokMSA_id:79109 clone csbio160171 2.28.1.6.8.7352 OTU 1 seq prokMSA_id:4665 Blastochloris viridis str. G7 2.28.1.6.8.7368 OTU 1 seq prokMSA_id:64286 Alpha LMG 20591 2.28.1.6.8.7370 OTU 1 seq prokMSA_id:85551 clone CCM24a 2.28.1.6.8.7392 OTU 1 seq prokMSA_id:76573 alpha clone JG36-TzT-182 2.28.1.6.8.7484 OTU 1 seq prokMSA_id:5402 clone 49524 2.28.1.6.8.7483 OTU 4 seqs prokMSA_id:4658 Xanthobacter autotrophicus str. JW33. X94203 prokMSA_id:24033 Alpha S-C2-18A AB074717 prokMSA_id:26549 Alpha S-C1-18B2 AB074716 prokMSA_id:62748 Xanthobacter viscosus 2.28.1.6.8.7488 OTU 1 seq prokMSA_id:32098 clone Tc78 2.28.1.6.8.7489 OTU 1 seq prokMSA_id:75897 alpha clone JG34-KF-361 2.28.1.6.8.7495 OTU 1 seq prokMSA_id:4680 Rhodoplanes roseus str. 941 2.28.1.6.8.7544 OTU 1 seq prokMSA_id:64872 clone 92 2.28.1.6.8.7564 OTU 1 seq prokMSA_id:4648 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.28.1.6.8.7620 OTU 1 seq prokMSA_id:39556 GR-WP33-3 clone GR-WP33-3 2.28.1.6.9 MSI.TRICHOSPORIUM_SUBGROUP 67 seqs 2.28.1.6.9.6625 OTU 1 seq prokMSA_id:4735 Methylosinus sp. str. LAC 2.28.1.6.9.6722 OTU 1 seq prokMSA_id:30920 clone Tc66 2.28.1.6.9.6892 OTU 1 seq prokMSA_id:32800 PHOS-HE47 2.28.1.6.9.6898 OTU 1 seq prokMSA_id:65465 clone a13113 2.28.1.6.9.7103 OTU 1 seq prokMSA_id:37026 soil clone 1152-2 2.28.1.6.9.7173 OTU 1 seq prokMSA_id:33878 clone Tc49 2.28.1.6.9.7193 OTU 1 seq prokMSA_id:23345 MHP17 2.28.1.6.9.7219 OTU 1 seq prokMSA_id:4737 Methylosinus sporium str. provided by Y.Trotsenko 2.28.1.6.9.7318 OTU 1 seq prokMSA_id:41087 clone HTD9 2.28.1.6.9.7399 OTU 1 seq prokMSA_id:20378 sludge A20 2.28.1.6.9.7410 OTU 2 seqs prokMSA_id:29896 alpha clone Ebpr11 prokMSA_id:44677 alpha clone Ebpr9 2.28.1.6.9.7640 OTU 55 seqs prokMSA_id:4736 str. B-3060 prokMSA_id:4738 Methylocystis parvus prokMSA_id:4739 Methylosinus trichosporium prokMSA_id:4740 Methylosinus PW1 str. PW1 prokMSA_id:4741 Methylocystis LW5 str. LW5 prokMSA_id:4742 Methylosinus LW3 str. LW3 prokMSA_id:4747 str. AML-A3 prokMSA_id:4748 str. AML-A6 prokMSA_id:4749 str. LR1 prokMSA_id:4752 Methylocystis M str. M prokMSA_id:4753 Methylocystis WI 14 str. WI 14 prokMSA_id:28443 Methylocystis sp. SV97 strain SV97 prokMSA_id:30352 from anoxic bulk soil clone BSV53 prokMSA_id:32547 Methylosinus pucelana prokMSA_id:35967 Methylosinus sp. LW8 prokMSA_id:36920 clone LO13.7 prokMSA_id:42706 Methylosinus sporium prokMSA_id:44508 Methylosinus trichosporium prokMSA_id:52070 Methylosinus sp. LW4 prokMSA_id:55280 Methylocystis sp. SC2 strain SC2 prokMSA_id:55601 Methylocystis sp. 42/22 strain 42/22 prokMSA_id:55990 Methylocystis sp. WRS complete prokMSA_id:56124 Methylocystis sp. M42/1 strain M42/1 prokMSA_id:56187 Methylocystis sp. H9a strain H9a prokMSA_id:56666 Methylosinus trichosporium strain 1 prokMSA_id:58407 Alpha methylotroph Hohenstaufen prokMSA_id:58408 Methylocystis sp. 18-2 prokMSA_id:58411 Methylosinus sp. NCIMB 13214 prokMSA_id:61187 clone UP4 prokMSA_id:61188 clone UP6 prokMSA_id:61191 clone UP5 prokMSA_id:64196 Methylosinus sp. D15a strain D15a prokMSA_id:64198 Methylocystis sp. 82 strain 82 prokMSA_id:64199 Methylocystis sp. KS33 strain KS33 prokMSA_id:64200 Methylocystis sp. KS31 strain KS31 prokMSA_id:64201 Methylocystis sp. M31 strain M31 prokMSA_id:64202 Methylocystis sp. F10V2a strain F10V2a prokMSA_id:64203 Methylocystis echinoides strain 2 prokMSA_id:64204 Methylocystis sp. 39 strain 39 prokMSA_id:64206 Methylocystis sp. KS7 strain KS7 prokMSA_id:64207 Methylocystis sp. KS3 strain KS3 prokMSA_id:64208 Methylosinus trichosporium strain KS24b prokMSA_id:64209 Methylocystis sp. KS12 strain KS12 prokMSA_id:64210 Methylocystis sp. KS8a strain KS8a prokMSA_id:64211 Methylosinus trichosporium strain O19/1 prokMSA_id:64217 Methylocystis sp. Pi5/4 strain Pi5/4 prokMSA_id:64218 Methylocystis sp. 50/42a strain 50/42a prokMSA_id:64219 Methylosinus trichosporium strain 33/1 prokMSA_id:64224 Methylocystis sp. 51 strain 51 prokMSA_id:64227 Methylocystis sp. IMET 10486 strain IMET 10486 prokMSA_id:64230 Methylocystis sp. 495/4 strain 495/4 prokMSA_id:64234 Methylosinus trichosporium strain KS21 prokMSA_id:70162 Methylosinus sporium strain 9/1 prokMSA_id:70519 Methylocystis sp. Ch22 strain Ch22 prokMSA_id:74224 Methylosinus trichosporium strain SC10 2.28.1.6.10 BEI.INDICA_SUBGROUP 22 seqs 2.28.1.6.10.6645 OTU 1 seq prokMSA_id:32333 alpha UP3 2.28.1.6.10.6719 OTU 1 seq prokMSA_id:4760 Afipia genosp. 6 str. G8665 2.28.1.6.10.6721 OTU 1 seq prokMSA_id:4761 unnamed organism 2.28.1.6.10.6731 OTU 1 seq prokMSA_id:4764 clone DA067 2.28.1.6.10.6734 OTU 1 seq prokMSA_id:4765 str. TM19 2.28.1.6.10.6762 OTU 2 seqs prokMSA_id:36961 alpha UP1 prokMSA_id:61190 clone UP8 2.28.1.6.10.6767 OTU 1 seq prokMSA_id:31950 isolate BUG-236 2.28.1.6.10.6946 OTU 1 seq prokMSA_id:85004 clone CCM12a 2.28.1.6.10.7000 OTU 1 seq prokMSA_id:19989 FukuS110 2.28.1.6.10.7117 OTU 1 seq prokMSA_id:51286 alpha UP2 2.28.1.6.10.7147 OTU 1 seq prokMSA_id:78811 alpha clone JG30a-KF-59 2.28.1.6.10.7153 OTU 5 seqs prokMSA_id:24886 clone RB7C4 prokMSA_id:27469 clone RB7C5 prokMSA_id:64189 Methylocella sp. BL2 prokMSA_id:78050 alpha clone:Rs-K73 AB089096 prokMSA_id:83530 Methylocella tundrae strain T4 2.28.1.6.10.7199 OTU 1 seq prokMSA_id:76517 alpha clone Gitt-KF-194 2.28.1.6.10.7302 OTU 1 seq prokMSA_id:51161 sludge A28b 2.28.1.6.10.7326 OTU 1 seq prokMSA_id:45223 clone TAF-A108 2.28.1.6.10.7419 OTU 1 seq prokMSA_id:58103 Ellin340 2.28.1.6.10.7591 OTU 1 seq prokMSA_id:80741 alpha clone W2b-8B 2.28.1.6.11 METHYLOBACTERIA_SUBGROUP 85 seqs 2.28.1.6.11.1 MLB.EXTORQUENS_SUBGROUP 20 seqs 2.28.1.6.11.1.6782 OTU 1 seq prokMSA_id:4772 unnamed organism 2.28.1.6.11.1.7060 OTU 1 seq prokMSA_id:76105 alpha clone Sh765B-TzT-3 2.28.1.6.11.1.7585 OTU 18 seqs prokMSA_id:4771 Methylobacterium extorquens ATCC 43645 . NONE prokMSA_id:4776 Methylobacterium zatmanii str. MA1/5 JCM 2819 prokMSA_id:4780 Methylobacterium extorquens NCIMB 9399 . L20847 prokMSA_id:4782 Methylobacterium extorquens JCM 2802 prokMSA_id:4783 Methylobacterium sp. str. GK101 prokMSA_id:4786 Methylobacterium rhodesianum JCM 2810 prokMSA_id:4787 Methylobacterium sp. str. GK118 prokMSA_id:4788 Methylobacterium APW prokMSA_id:32399 Methylobacterium sp. G296-15 prokMSA_id:42869 Methylobacterium sp. TD4 prokMSA_id:43152 Methylobacterium extorquens prokMSA_id:48113 Methylobacterium sp. P1 AF148859 prokMSA_id:52319 Methylobacterium sp. CM4 prokMSA_id:55455 Methylobacterium extorquens prokMSA_id:62973 Methylobacterium sp. clone 84-14 rrn prokMSA_id:68822 Methylobacterium extorquens ; tRNA-Ile and tRNA-Ala genes co prokMSA_id:84672 Methylobacterium sp. BJ001 and -23S intergenic spacer comple prokMSA_id:86781 Methylobacterium podarium AF514774 2.28.1.6.11.2 MLB.RADIOTOLERANS_SUBGROUP 30 seqs 2.28.1.6.11.2.6744 OTU 1 seq prokMSA_id:72323 Methylobacterium sp. strain LMG-19419 2.28.1.6.11.2.7004 OTU 2 seqs prokMSA_id:58322 Iron-oxidizing acidophile Y005 prokMSA_id:81189 Methylobacterium fujisawaense 2.28.1.6.11.2.7202 OTU 1 seq prokMSA_id:49806 Methylobacterium nodulans strain ORS1924 2.28.1.6.11.2.7269 OTU 1 seq prokMSA_id:4791 Blastobacter sp. str. BF10 2.28.1.6.11.2.7271 OTU 1 seq prokMSA_id:4794 str. BD5-10 2.28.1.6.11.2.7290 OTU 1 seq prokMSA_id:4797 Blastobacter sp. str. PC30.44 2.28.1.6.11.2.7581 OTU 1 seq prokMSA_id:4803 str. MBIC3401 2.28.1.6.11.2.7605 OTU 1 seq prokMSA_id:68458 Symbiont cf. Methylobacterium of Acromyrmex octospinosus 2.28.1.6.11.2.7611 OTU 20 seqs prokMSA_id:4790 Methylobacterium sp. str. F18 prokMSA_id:4795 Methylobacterium sp. str. F15 prokMSA_id:4796 Methylobacterium sp. str. F42 prokMSA_id:4798 Methylobacterium sp. str. F05 prokMSA_id:4799 Methylobacterium fujisawaense DSM 5686 prokMSA_id:4800 Methylobacterium radiotolerans JCM 2831 prokMSA_id:4801 Methylobacterium sp. str. F73 prokMSA_id:4806 Methylobacterium mesophilicum JCM 2829 prokMSA_id:16540 clone GL182.19 AY038616 prokMSA_id:19442 Alpha S-Su1-8E AB074749 prokMSA_id:20530 Methylobacterium sp. A1 prokMSA_id:24700 Alpha D-C3-20A AB074668 prokMSA_id:25318 Methylobacterium sp. NI4 prokMSA_id:26317 Methylobacterium mesophilicum strain JCM 2829 prokMSA_id:29815 Methylobacterium sp. G296-5 prokMSA_id:32868 Methylobacterium sp. PC30.38 strain PC30.38 X89904 prokMSA_id:35133 WD2113 clone WD2113 prokMSA_id:77609 alpha clone:APe2_3 prokMSA_id:78782 Phenanthrene-degrading 35 prokMSA_id:79023 Phenanthrene-degrading M10 2.28.1.6.11.2.7659 OTU 1 seq prokMSA_id:60394 Rhizobiaceae LA52 2.28.1.6.11.3 MLB.ORGANOPHILUM_SUBGROUP 2 seqs 2.28.1.6.11.3.7595 OTU 1 seq prokMSA_id:4808 Methylobacterium MBIC4305 str. MBIC4305 2.28.1.6.11.3.7593 OTU 1 seq prokMSA_id:4807 Methylobacterium organophilum str. XX JCM 2833 2.28.1.6.11.4 BO.THIOOXIDANS_SUBGROUP 33 seqs 2.28.1.6.11.4.7143 OTU 32 seqs prokMSA_id:4810 Bosea thiooxidans str. BI-42 DSM 9653 . X81044 prokMSA_id:4811 Afipia genosp. 7 str. G8643. U87773 prokMSA_id:4812 Afipia genosp. 8 str. G8569. U87774 prokMSA_id:4813 Afipia genosp. 9 str. G8994. U87775 prokMSA_id:4814 Afipia genosp. 9 str. G8995 prokMSA_id:4815 Afipia genosp. 9 str. G8989. U87777 prokMSA_id:4816 Afipia genosp. 9 str. G8998 prokMSA_id:4817 Afipia genosp. 9 str. G8990 prokMSA_id:4820 clone SJA-105 prokMSA_id:4821 str. 5Z2111 prokMSA_id:4822 Bosea thiooxidans str. BI-42 DSM 9653 . AJ250796 prokMSA_id:4823 Bosea thiooxidans str. RpPl5-VS. AJ250797 prokMSA_id:4824 Bosea thiooxidans str. RpPl3-VS. AJ250798 prokMSA_id:4825 Bosea thiooxidans str. MGV6-VS. AJ250799 prokMSA_id:4826 Bosea thiooxidans str. KB13-VS prokMSA_id:17030 Bosea sp. MN 51a isolate MN 51a AJ313022 prokMSA_id:24179 Alpha 34635 prokMSA_id:25399 Alpha 34620 prokMSA_id:27298 Alpha 34649 prokMSA_id:27741 Afipia sp. LMG 19832 strain LMG 19832 AJ300771 prokMSA_id:29196 Alpha 34614 prokMSA_id:47211 Alpha 63287 prokMSA_id:47963 Alpha 63286 prokMSA_id:48650 Bosea mexicana prokMSA_id:56322 Bosea thiooxidans strain BI-42 prokMSA_id:61828 alpha clone CLi38 prokMSA_id:66285 Afipia sp. LCSAOTU26 prokMSA_id:66622 alpha clone 8-2 AY094498 prokMSA_id:68725 Glacial ice M3C1.8K-TD7 prokMSA_id:69677 Bosea sp. 7F prokMSA_id:76587 MF_clone_40 prokMSA_id:77260 MF_clone_121 2.28.1.6.11.4.7655 OTU 1 seq prokMSA_id:4819 clone SJA-9 2.28.1.6.12 BRADYRHIZOBIUM_SUBGROUP 227 seqs 2.28.1.6.12.1 AFIPIA.FELIS_SUBGROUP 7 seqs 2.28.1.6.12.1.6824 OTU 1 seq prokMSA_id:33444 alpha GT20-1a 2.28.1.6.12.1.7029 OTU 1 seq prokMSA_id:16718 alpha clone BIfci45 2.28.1.6.12.1.7403 OTU 5 seqs prokMSA_id:4829 Afipia felis prokMSA_id:4830 DSM 1083 prokMSA_id:4831 Afipia felis str. AfTA-1 CDC G9192 prokMSA_id:68815 Afipia felis ; tRNA-Ile and tRNA-Ala genes complete ; and 23 prokMSA_id:77914 Oligotropha carboxidovorans complete strain: S23 2.28.1.6.12.2 AFP.CLEVELANDENSIS 1 seq 2.28.1.6.12.2.7078 OTU 1 seq prokMSA_id:4832 Afipia clevelandensis 2.28.1.6.12.4 NTB.WINOGRADSKYI_SUBGROUP 9 seqs 2.28.1.6.12.4.6927 OTU 7 seqs prokMSA_id:4834 Nitrobacter winogradskyi ATCC 25381 prokMSA_id:4840 Nitrobacter winogradskyi str. W prokMSA_id:4843 Nitrobacter hamburgensis str. X14 prokMSA_id:4844 Nitrobacter hamburgensis str. Nb14? or X14 prokMSA_id:17737 Nitrobacter winogradskyi prokMSA_id:25095 Nitrobacter sp. PJN1 prokMSA_id:47296 Nitrobacter sp. NRB5220 2.28.1.6.12.4.7006 OTU 1 seq prokMSA_id:29702 Nitrobacter sp. KB215 2.28.1.6.12.4.7438 OTU 1 seq prokMSA_id:56503 Nitrobacter sp. KB212 2.28.1.6.12.5 RPS.PALUSTRIS_SUBGROUP 28 seqs 2.28.1.6.12.5.6768 OTU 1 seq prokMSA_id:4850 Rhodopseudomonas palustris str. GH 2.28.1.6.12.5.6799 OTU 1 seq prokMSA_id:4865 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 2.28.1.6.12.5.7316 OTU 12 seqs prokMSA_id:4851 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 prokMSA_id:4852 Afipia genosp. 5 str. F8014 prokMSA_id:4859 Rhodopseudomonas palustris prokMSA_id:4863 Rhodopseudomonas palustris str. No.7 prokMSA_id:4864 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 prokMSA_id:19194 Rhodopseudomonas palustris strain KD1 prokMSA_id:23531 Rhodopseudomonas palustris strain BIS10 prokMSA_id:28497 Rhodopseudomonas sp. B29 prokMSA_id:37581 Rhodopseudomonas palustris strain BIS6 prokMSA_id:42172 Rhodopseudomonas palustris strain DCP3 prokMSA_id:62340 Rhodopseudomonas palustris isolate:VA2-2 prokMSA_id:68785 Rhodopseudomonas palustris strain Wai1val1 2.28.1.6.12.5.7333 OTU 13 seqs prokMSA_id:4855 Rhodopseudomonas v-1 str. v-1 prokMSA_id:4858 Rhodopseudomonas g-c str. g-c prokMSA_id:4867 Afipia genosp. 4 str. G7812 prokMSA_id:4913 Afipia genosp. 4 str. G6050 prokMSA_id:4914 Afipia genosp. 4 str. G3644 prokMSA_id:21255 Rhodopseudomonas palustris prokMSA_id:62333 Rhodopseudomonas sp. HMD89 prokMSA_id:62337 Rhodopseudomonas sp. HMD88 prokMSA_id:62406 alpha clone FTLM116 prokMSA_id:67647 Rhodopseudomonas palustris prokMSA_id:68786 Rhodopseudomonas palustris strain Wai1S1 prokMSA_id:73043 Rhodopseudomonas palustris isolate:99D prokMSA_id:75450 clone DCE47 2.28.1.6.12.5.7557 OTU 1 seq prokMSA_id:47708 alpha clone BIvi26 2.28.1.6.12.6 ENVIRONMENTAL_CLONE_JAP850_SUBGROUP 1 seq 2.28.1.6.12.6.7631 OTU 1 seq prokMSA_id:4878 clone JAP850 2.28.1.6.12.8 BDR.LUPINI_SUBGROUP 72 seqs 2.28.1.6.12.8.6941 OTU 19 seqs prokMSA_id:4866 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 prokMSA_id:4983 Bradyrhizobium genosp. F str. BDV5029 prokMSA_id:23765 Bradyrhizobium japonicum strain DASA02010 prokMSA_id:27428 Bradyrhizobium japonicum strain DASA37011 prokMSA_id:28205 Nitrobacter winogradskyi AF363288 prokMSA_id:33185 Bradyrhizobium japonicum strain DASA38025 prokMSA_id:35097 Alpha D-C2-17A AB074667 prokMSA_id:40221 rape rhizosphere wr0024 prokMSA_id:41012 Arsenic resistant soil 7-02 AF308874 prokMSA_id:45495 Bradyrhizobium japonicum strain DASA03183 prokMSA_id:48037 Bradyrhizobium japonicum strain DASA01059 AF417550 prokMSA_id:49277 Bradyrhizobium japonicum strain THA7 AF417545 prokMSA_id:54256 Bradyrhizobium japonicum strain DASA02007 prokMSA_id:62972 Bradyrhizobium sp. clone 81-24 rrn AF526939 prokMSA_id:62985 Bradyrhizobium sp. clone T8-12 rrn prokMSA_id:63273 clone FW94 AF523947 prokMSA_id:63890 Rhodopseudomonas rhenobacensis complete prokMSA_id:73880 Nitrobacter sp prokMSA_id:87593 Bradyrhizobium sp. Kus-6 AF510593 2.28.1.6.12.8.7077 OTU 1 seq prokMSA_id:39678 Alpha 34626 2.28.1.6.12.8.7087 OTU 31 seqs prokMSA_id:4880 Bradyrhizobium lupini prokMSA_id:4931 Bradyrhizobium genosp. H str. BDV5329 prokMSA_id:4933 Bradyrhizobium ApB16 str. ApB16 prokMSA_id:18027 Bradyrhizobium japonicum strain MSDJ 5697 prokMSA_id:19473 Bradyrhizobium japonicum strain MSDJ 5584 prokMSA_id:19767 Bradyrhizobium japonicum strain MSDJ 5317 prokMSA_id:20855 Bradyrhizobium liaoningense strain LMG 18230 prokMSA_id:20975 Bradyrhizobium japonicum strain MSDJ 5582 prokMSA_id:21490 Bradyrhizobium japonicum strain:NA6545 prokMSA_id:21631 Bradyrhizobium sp. MSDJ 5493 prokMSA_id:23776 Bradyrhizobium japonicum strain:USDA135 prokMSA_id:26267 Bradyrhizobium liaoningense prokMSA_id:29213 Bradyrhizobium japonicum strain MSDJ 5605 prokMSA_id:30965 Bradyrhizobium japonicum strain MSDJ 5569 prokMSA_id:31104 Bradyrhizobium japonicum strain MSDJ 5327 prokMSA_id:34952 Bradyrhizobium liaoningense strain 2043 prokMSA_id:35319 Bradyrhizobium japonicum strain MSDJ 5344 prokMSA_id:36732 Bradyrhizobium japonicum strain SEMIA 5079 complete prokMSA_id:36971 Bradyrhizobium japonicum PRY1 complete prokMSA_id:37117 Bradyrhizobium japonicum strain MSDJ 5718 prokMSA_id:37915 Bradyrhizobium japonicum strain USDA 123 prokMSA_id:42291 Bradyrhizobium japonicum strain MSDJ 5563 prokMSA_id:47540 Bradyrhizobium sp. Ppau3-25 prokMSA_id:48441 Bradyrhizobium liaoningense strain 2281 prokMSA_id:51333 Bradyrhizobium sp. MSDJ 5495 prokMSA_id:61020 Bradyrhizobium japonicum isolate HA1 prokMSA_id:63555 Bradyrhizobium japonicum strain SEMIA 5085 complete prokMSA_id:69144 Bradyrhizobium japonicum strain USDA 123 ; tRNA-Ile and tRNA prokMSA_id:69704 Bradyrhizobium japonicum strain USDA 135 ; tRNA-Ile and tRNA prokMSA_id:70036 Bradyrhizobium liaoningense strain 2281 USDA 3622 ; tRNA-Ile prokMSA_id:70284 Bradyrhizobium japonicum strain USDA 127 ; tRNA-Ile and tRNA 2.28.1.6.12.8.7196 OTU 8 seqs prokMSA_id:4920 clone OCS126 prokMSA_id:30120 isolate HRV39 Z88591 prokMSA_id:32937 alpha NAC11-16 prokMSA_id:41962 marine ZD0209 prokMSA_id:68992 alpha MB11B03 ; tRNA-Ile complete ; and 23S prokMSA_id:72433 isolate HRV6 Z88583 prokMSA_id:79431 clone ZA3446c prokMSA_id:93117 alpha clone PLY-P1-97 AY354816 2.28.1.6.12.8.7398 OTU 11 seqs prokMSA_id:4921 Bradyrhizobium lupini str. KM50 90 USDA 3514 prokMSA_id:23425 Bradyrhizobium sp. MSDJ 2024 prokMSA_id:24854 Bradyrhizobium sp. strain Da3-1 prokMSA_id:25125 Bradyrhizobium sp. MSDJ 5728 prokMSA_id:37374 Bradyrhizobium sp. MSDJ 5494 prokMSA_id:44859 Bradyrhizobium sp. MSDJ 2027 prokMSA_id:46384 Bradyrhizobium sp. MSDJ 5729 prokMSA_id:50671 Bradyrhizobium sp. WM9 prokMSA_id:69075 Bradyrhizobium japonicum strain USDA 4 ; tRNA-Ile and tRNA-A prokMSA_id:69453 Bradyrhizobium japonicum strain USDA 38 ; tRNA-Ile and tRNA- prokMSA_id:81286 Bradyrhizobium sp. ORS199 2.28.1.6.12.8.7450 OTU 1 seq prokMSA_id:24441 alpha clone BIaii16 2.28.1.6.12.8.7502 OTU 1 seq prokMSA_id:32002 Bradyrhizobium japonicum strain DASA12007 2.28.1.6.12.9 BDR.JAPONICUS_SUBGROUP 2 seqs 2.28.1.6.12.9.6942 OTU 1 seq prokMSA_id:45827 Bradyrhizobium japonicum strain DASA37026 2.28.1.6.12.9.7154 OTU 1 seq prokMSA_id:4940 str. TM28 2.28.1.6.12.10 BDR.ELKANII_SUBGROUP 51 seqs 2.28.1.6.12.10.6636 OTU 21 seqs prokMSA_id:4943 Bradyrhizobium sp. LMG 9520 prokMSA_id:4945 Bradyrhizobium sp. LMG 9966 prokMSA_id:4946 Bradyrhizobium elkanii prokMSA_id:4947 Bradyrhizobium sp. LMG 9980 prokMSA_id:4961 Bradyrhizobium sp. LMG 10689 prokMSA_id:16523 Bradyrhizobium elkanii strain USDA 94 prokMSA_id:31992 Bradyrhizobium sp. 5F3 prokMSA_id:33324 Bradyrhizobium sp. bfs1b prokMSA_id:36853 Alpha 12A prokMSA_id:39071 Bradyrhizobium elkanii strain SEMIA 587 complete prokMSA_id:48285 Alpha RD5-C2 prokMSA_id:55820 Bradyrhizobium elkanii strain USDA 121 ; tRNA-Ile and tRNA-A prokMSA_id:56127 Bradyrhizobium elkanii strain USDA 23 ; tRNA-Ile and tRNA-Al prokMSA_id:56364 Bradyrhizobium sp. ORS 3262 prokMSA_id:64297 Bradyrhizobium sp. ORS 3260 prokMSA_id:68819 Bradyrhizobium elkanii strain USDA 90 ; tRNA-Ile and tRNA-Al prokMSA_id:68820 Bradyrhizobium elkanii strain USDA 86 ; tRNA-Ile and tRNA-Al prokMSA_id:70012 Bradyrhizobium elkanii ; tRNA-Ile and tRNA-Ala genes complet prokMSA_id:70194 Bradyrhizobium elkanii strain USDA 130 ; tRNA-Ile and tRNA-A prokMSA_id:71952 Bradyrhizobium elkanii strain USDA 31 ; tRNA-Ile and tRNA-Al prokMSA_id:81433 Bradyrhizobium sp. ORS204 2.28.1.6.12.10.6867 OTU 1 seq prokMSA_id:65458 clone a13131 2.28.1.6.12.10.6887 OTU 6 seqs prokMSA_id:4949 str. HW13 prokMSA_id:4950 str. HWK12 prokMSA_id:21176 Bradyrhizobium elkanii strain DASA37005 prokMSA_id:35279 mRNA clone sipK8 prokMSA_id:49293 Bradyrhizobium YB2 prokMSA_id:55735 Bradyrhizobium elkanii strain USDA 46 ; tRNA-Ile and tRNA-Al 2.28.1.6.12.10.7044 OTU 6 seqs prokMSA_id:4962 Afipia genosp. 1 str. G6457 prokMSA_id:4963 Afipia genosp. 1 str. F872 prokMSA_id:4964 Afipia genosp. 2 str. G8965 prokMSA_id:4965 Afipia genosp. 2 str. G4438 prokMSA_id:5045 Bradyrhizobium 'SH 283012' str. SH 283012 prokMSA_id:57890 Bradyrhizobium sp. SH28301 AY141982 2.28.1.6.12.10.7096 OTU 1 seq prokMSA_id:49111 earthworm cast clone C013 2.28.1.6.12.10.7126 OTU 1 seq prokMSA_id:75549 alpha clone S15A-MN96 2.28.1.6.12.10.7328 OTU 1 seq prokMSA_id:45478 Bradyrhizobium sp. 2FB3 2.28.1.6.12.10.7390 OTU 5 seqs prokMSA_id:4967 Afipia broomeae str. F186 prokMSA_id:4971 Afipia broomeae str. G5958 prokMSA_id:4972 Afipia genosp. 10 str. G8996 prokMSA_id:41002 Alpha 34632 prokMSA_id:78588 Phenanthrene-degrading L51B 2.28.1.6.12.10.7477 OTU 7 seqs prokMSA_id:4977 str. BTH prokMSA_id:4978 str. RCO. D89030 prokMSA_id:41143 rape rhizosphere wr0005 prokMSA_id:42229 rape rhizosphere wr0004 prokMSA_id:55508 Bradyrhizobium sp. DASA 35082 prokMSA_id:79448 clone ZA2523c prokMSA_id:94147 alpha clone JG36-GS-25 AJ582030 2.28.1.6.12.10.7522 OTU 1 seq prokMSA_id:59954 Bradyrhizobium sp. KKI14 complete 2.28.1.6.12.10.7629 OTU 1 seq prokMSA_id:4968 unnamed organism 2.28.1.6.12.12 BDR.LIAONINGENSIS_SUBGROUP 34 seqs 2.28.1.6.12.12.6878 OTU 34 seqs prokMSA_id:4885 Bradyrhizobium japonicum IAM 12608 prokMSA_id:4929 Bradyrhizobium genosp. G str. BDV5680 prokMSA_id:4980 Bradyrhizobium japonicum prokMSA_id:4984 str. G14127 prokMSA_id:4997 Bradyrhizobium Pe1-3 str. Pe1-3 prokMSA_id:5001 Bradyrhizobium genosp. C str. BDV5792 prokMSA_id:5002 Bradyrhizobium genosp. K str. BDV5358 prokMSA_id:5004 Bradyrhizobium genosp. D str. BDV5563 prokMSA_id:5005 Bradyrhizobium genosp. I str. BDV5370 prokMSA_id:5006 Bradyrhizobium genosp. J str. BDV5697 prokMSA_id:5008 Bradyrhizobium genosp. O str. BDV5840 prokMSA_id:5010 str. G14003 prokMSA_id:17820 Bradyrhizobium sp. Pplu1-1 prokMSA_id:20737 Bradyrhizobium japonicum strain DASA24015 prokMSA_id:22742 Bradyrhizobium japonicum strain:NK2 AB070567 prokMSA_id:27694 Bradyrhizobium japonicum strain USDA 110 prokMSA_id:32699 Bradyrhizobium japonicum PRY40 complete prokMSA_id:37715 Bradyrhizobium japonicum strain MSDJ G49 prokMSA_id:38637 Bradyrhizobium japonicum strain:NK5 prokMSA_id:39358 Bradyrhizobium sp. MSDJ G17 prokMSA_id:39826 Bradyrhizobium sp. Pplu1-11 prokMSA_id:49866 Bradyrhizobium sp. B071 complete prokMSA_id:50479 Bradyrhizobium japonicum strain MSDJ 5732 prokMSA_id:51967 Bradyrhizobium japonicum PRY42 complete prokMSA_id:55721 Bradyrhizobium japonicum strain USDA 122 ; tRNA-Ile and tRNA prokMSA_id:56515 Bradyrhizobium japonicum strain USDA 129 ; tRNA-Ile and tRNA prokMSA_id:61022 Bradyrhizobium japonicum isolate SD5 prokMSA_id:62331 Bradyrhizobium sp. MAFF 210318 prokMSA_id:64291 Bradyrhizobium sp. ORS 3259 prokMSA_id:68703 Bradyrhizobium sp. LMTR 28 prokMSA_id:68818 Bradyrhizobium japonicum strain USDA 91 ; tRNA-Ile and tRNA- prokMSA_id:69495 Bradyrhizobium japonicum strain USDA 62 ; tRNA-Ile and tRNA- prokMSA_id:77282 Bradyrhizobium japonicum strain SEMIA 586 complete prokMSA_id:81409 Bradyrhizobium japonicum 2.28.1.6.12.14 BLB.DENITRIFICANS_SUBGROUP 22 seqs 2.28.1.6.12.14.6917 OTU 20 seqs prokMSA_id:4930 Bradyrhizobium genosp. E str. BDV5810 prokMSA_id:4938 Bradyrhizobium japonicum IAM 12608 prokMSA_id:4939 Bradyrhizobium sp. str. 55S prokMSA_id:4941 Bradyrhizobium sp. str. 129 prokMSA_id:4995 Bradyrhizobium Mm1-3 str. Mm1-3 prokMSA_id:5037 Bradyrhizobium sp. LMG 12187 prokMSA_id:5046 Bradyrhizobium sp. USDA 4362 prokMSA_id:5055 Agromonas oligotrophica JCM 1494 prokMSA_id:22219 WD275 clone WD275 prokMSA_id:27860 clone p-5142-2Wb3 prokMSA_id:31138 Bradyrhizobium sp. ORS2012 prokMSA_id:35423 alpha clone SM2H01 prokMSA_id:37744 Bradyrhizobium sp. ORS2005 prokMSA_id:43422 Bradyrhizobium sp. STM461 prokMSA_id:62335 Bradyrhizobium sp. IRBG 228 prokMSA_id:62336 Bradyrhizobium sp. IRBG 230 prokMSA_id:62338 Bradyrhizobium sp. IRBG 2 prokMSA_id:62343 Bradyrhizobium sp. BTAi 1 prokMSA_id:71353 Bradyrhizobium sp. C7T1 prokMSA_id:78897 clone JG30-KF-AS89 2.28.1.6.12.14.7348 OTU 1 seq prokMSA_id:5026 Afipia genosp. 12 str. G8997 2.28.1.6.12.14.7353 OTU 1 seq prokMSA_id:82205 clone HC65 2.28.1.6.13 RDB.MARINUM_SUBGROUP 10 seqs 2.28.1.6.13.7152 OTU 1 seq prokMSA_id:25832 Alpha SOGA29 2.28.1.6.13.7166 OTU 1 seq prokMSA_id:72005 clone 4-Org1-14 2.28.1.6.13.7286 OTU 1 seq prokMSA_id:50080 clone 4-Org2-27 2.28.1.6.13.7454 OTU 1 seq prokMSA_id:5066 Rhodobium orientis str. MB312 JCM 9337 2.28.1.6.13.7455 OTU 1 seq prokMSA_id:5067 clone RFN49 2.28.1.6.13.7553 OTU 5 seqs prokMSA_id:5073 Rhodobium marinum DSM 2698 . D30790 prokMSA_id:5074 Rhodopseudomonas sp. str. H. Gest HG/JF ATCC 35601. D30791 prokMSA_id:55679 Rhizobiaceae PH34B prokMSA_id:63876 Rhodopseudomonas julia complete prokMSA_id:78313 Rhodobium sp. AR2106 2.28.1.6.15 MSO.HUAKUII_SUBGROUP 30 seqs 2.28.1.6.15.6857 OTU 25 seqs prokMSA_id:5082 Mesorhizobium loti IAM 13588 prokMSA_id:5083 Mesorhizobium loti LMG 6124 prokMSA_id:5084 Mesorhizobium genosp. T str. BDV5908 prokMSA_id:5085 Mesorhizobium loti str. 261 ICMP 3153 prokMSA_id:5091 Mesorhizobium huakuii IFO 15243 prokMSA_id:5093 Mesorhizobium huakuii IAM 14158 prokMSA_id:5094 Mesorhizobium amorphae ACCC 19665 prokMSA_id:5096 Mesorhizobium loti LMG 6123 prokMSA_id:5097 Mesorhizobium genosp. U str. BDV5514 prokMSA_id:5098 Mesorhizobium 'SH 15003' str. SH 15003 prokMSA_id:5131 str. WSM1497 prokMSA_id:5157 Mesorhizobium mediterraneum str. UPM-Ca36 prokMSA_id:20161 Mesorhizobium sp. Lo7-12 prokMSA_id:31415 Mesorhizobium chacoense strain PR5 prokMSA_id:35595 rape rhizosphere wr0035 prokMSA_id:37613 Mesorhizobium sp. USDA 3466 prokMSA_id:48243 Mesorhizobium sp. ORS1259 strain ORS1259 LMG 15324 prokMSA_id:57886 Mesorhizobium sp. SH267neu prokMSA_id:57887 Mesorhizobium sp. SH2851 prokMSA_id:62975 Rhizobium sp. clone 84-5 rrn prokMSA_id:81497 Mesorhizobium ciceri prokMSA_id:81730 Mesorhizobium tianshanense prokMSA_id:81838 Mesorhizobium mediterraneum strain PECA20 prokMSA_id:82013 Mesorhizobium sp. ORS207 prokMSA_id:82201 Mesorhizobium mediterraneum strain PECA03 2.28.1.6.15.6891 OTU 1 seq prokMSA_id:5104 Roseospirillum parvum str. 930I 2.28.1.6.15.6899 OTU 1 seq prokMSA_id:79154 sequences clone: IndB1-38 2.28.1.6.15.6925 OTU 1 seq prokMSA_id:5088 clone CLEAR-13 2.28.1.6.15.6924 OTU 1 seq prokMSA_id:5087 clone CLEAR-17 2.28.1.6.15.7323 OTU 1 seq prokMSA_id:76556 alpha clone JG37-AG-141 2.28.1.6.16 MSO.LOTI_SUBGROUP 118 seqs 2.28.1.6.16.6644 OTU 1 seq prokMSA_id:24325 alpha MERTZ_0CM_399 2.28.1.6.16.6665 OTU 1 seq prokMSA_id:49166 clone 4-Org2-22 2.28.1.6.16.6673 OTU 2 seqs prokMSA_id:60695 Phyllobacteriaceae NL21 prokMSA_id:77579 Mesorhizobium sp. TUT1018 AB098586 2.28.1.6.16.6689 OTU 1 seq prokMSA_id:27926 clone 4-Org2-4 2.28.1.6.16.6692 OTU 1 seq prokMSA_id:24063 Alpha Kaza-27 2.28.1.6.16.6759 OTU 1 seq prokMSA_id:68960 clone BIfdi7 2.28.1.6.16.6760 OTU 1 seq prokMSA_id:39309 alpha MERTZ_2CM_305 2.28.1.6.16.6810 OTU 1 seq prokMSA_id:68974 alpha MB13F01 ; tRNA-Ile and tRNA-Ala genes complete ; and 2 2.28.1.6.16.6849 OTU 1 seq prokMSA_id:50340 alpha rcr_52 2.28.1.6.16.6854 OTU 1 seq prokMSA_id:35051 Rhizobium sp. isolate PRLIST04 2.28.1.6.16.6858 OTU 1 seq prokMSA_id:25420 alpha NAC1-6 2.28.1.6.16.6893 OTU 1 seq prokMSA_id:5108 clone RB25 2.28.1.6.16.6916 OTU 1 seq prokMSA_id:83392 Antarctic R-9219 strain R-9219 2.28.1.6.16.6957 OTU 1 seq prokMSA_id:47381 alpha EC-B2 2.28.1.6.16.6962 OTU 3 seqs prokMSA_id:5114 Defluvibacter lusatiae DSM 11099 prokMSA_id:37701 Gram negative B4G-1A prokMSA_id:54913 Gram negative B5P-1 2.28.1.6.16.6966 OTU 5 seqs prokMSA_id:5146 Mesorhizobium tianshanense str. A-1BS USDA 3592 prokMSA_id:22176 Mesorhizobium sp. N33 prokMSA_id:24617 Mesorhizobium sp. Lc3-2 prokMSA_id:30025 Mesorhizobium sp. N39 prokMSA_id:42551 Mesorhizobium sp. N31 2.28.1.6.16.6986 OTU 2 seqs prokMSA_id:60654 alpha clone AEGEAN_167 prokMSA_id:60655 alpha clone AEGEAN_155 2.28.1.6.16.6996 OTU 1 seq prokMSA_id:32816 alpha MERTZ_21CM_168 2.28.1.6.16.7002 OTU 1 seq prokMSA_id:75002 alpha clone JG34-KF-258 2.28.1.6.16.7009 OTU 2 seqs prokMSA_id:29660 Alpha RSHD3S10 prokMSA_id:68663 alpha WIg-12 isolate WIg-12 2.28.1.6.16.7039 OTU 1 seq prokMSA_id:68662 alpha LIg-6 isolate LIg-6 2.28.1.6.16.7139 OTU 23 seqs prokMSA_id:5122 Mesorhizobium loti str. 3F6g2 LMG 4284 prokMSA_id:5124 Mesorhizobium genosp. S str. BDV5911 prokMSA_id:5125 Rhizobium CJ2 str. CJ2 S188 USDA 3440 prokMSA_id:5127 Mesorhizobium ciceri str. UPM-Ca7 ATCC 51585 prokMSA_id:5129 str. WSM1284 prokMSA_id:5132 Rhizobium CJ5 str. CJ5 24N USDA 3398 prokMSA_id:5151 Mesorhizobium loti LMG 6125 prokMSA_id:5152 Mesorhizobium HL56 str. HL56 prokMSA_id:5153 Mesorhizobium loti str. R8CS USDA 3467 prokMSA_id:5154 Mesorhizobium loti str. R88b USDA 3462 prokMSA_id:5155 Rhizobium sp. str. CIAM 1414 prokMSA_id:18809 Mesorhizobium sp. Lo9-4 prokMSA_id:22616 Mesorhizobium sp. Rch-19B isolate Rch-19B AJ417083 prokMSA_id:23862 Mesorhizobium sp. Rch-10B isolate Rch-10B AJ417090 prokMSA_id:27176 rape rhizosphere wr0034 prokMSA_id:37829 Mesorhizobium sp. N1 prokMSA_id:39417 Mesorhizobium sp. N20 prokMSA_id:39581 Mesorhizobium sp. Rch-2B isolate Rch-2B AJ417089 prokMSA_id:41882 Mesorhizobium sp. USDA 4003 prokMSA_id:45557 Mesorhizobium amorphae strain rob8 prokMSA_id:48799 Mesorhizobium sp. Rch-981 isolate Rch-981 AJ417082 prokMSA_id:66200 Mesorhizobium ciceri strain Rch9816 AJ487829 prokMSA_id:81855 Mesorhizobium ciceri strain C-2/2 2.28.1.6.16.7168 OTU 2 seqs prokMSA_id:21643 Agrobacterium kpc17 prokMSA_id:74699 Unknown marine alpha JP66.1 AY007677 2.28.1.6.16.7169 OTU 1 seq prokMSA_id:48705 alpha MERTZ_2CM_19 2.28.1.6.16.7216 OTU 1 seq prokMSA_id:5135 Ahrensia kielensis IAM 12618 2.28.1.6.16.7220 OTU 1 seq prokMSA_id:5136 unnamed organism 2.28.1.6.16.7225 OTU 1 seq prokMSA_id:31507 alpha MERTZ_0CM_243 2.28.1.6.16.7252 OTU 1 seq prokMSA_id:60656 alpha clone AEGEAN_108 2.28.1.6.16.7281 OTU 3 seqs prokMSA_id:77696 Fulvimarina pelagi strain HTCC2615 prokMSA_id:77742 Fulvimarina pelagi strain HTCC2619 AY178862 prokMSA_id:77907 Fulvimarina pelagi strain HTCC2506 AY178860 2.28.1.6.16.7312 OTU 1 seq prokMSA_id:23417 sponge symbiont RSWS1 2.28.1.6.16.7317 OTU 1 seq prokMSA_id:5110 clone 49519 2.28.1.6.16.7332 OTU 1 seq prokMSA_id:5116 unnamed organism 2.28.1.6.16.7379 OTU 7 seqs prokMSA_id:5115 Phyllobacterium myrsinacearum IAM 13584 prokMSA_id:5118 Phyllobacterium myrsinacearum str. HM35 prokMSA_id:5120 Nanobacterium sanguineum str. Seralab FBS batch 901045 prokMSA_id:5121 Nanobacterium sp. str. Seralab FBS batch 901045 prokMSA_id:17238 sheep mite Llangefni 18 AF290484 prokMSA_id:21666 sheep mite Llangefni 28 AF290483 prokMSA_id:35523 Rape rhizosphere tsb051 2.28.1.6.16.7381 OTU 10 seqs prokMSA_id:5107 Aminobacter aminovorans str. TK3001 DSM 7048 prokMSA_id:5109 str. CC495 prokMSA_id:5140 Chelatobacter heintzii DSM 6450 prokMSA_id:5141 str. IMB-1 prokMSA_id:5144 Aminobacter aganoensis str. TH-3 DSM 7051 prokMSA_id:26552 Methylotrophic loc440 prokMSA_id:31369 Pseudaminobacter sp. C147 prokMSA_id:41787 Aminobacter aminovorans prokMSA_id:50798 Chelatobacter heintzii 435 prokMSA_id:52607 Chelatobacter heintzii 2.28.1.6.16.7393 OTU 1 seq prokMSA_id:5137 str. JTB260 2.28.1.6.16.7416 OTU 1 seq prokMSA_id:39227 Gram negative B1G-2 2.28.1.6.16.7451 OTU 1 seq prokMSA_id:26047 alpha MERTZ_2CM_84 2.28.1.6.16.7497 OTU 24 seqs prokMSA_id:5133 str. Mena 25/4-1 DSM 11455 prokMSA_id:21876 Rhizobium sp. H-4 prokMSA_id:21931 Sinorhizobium sp. C2 AF227754 prokMSA_id:24111 Elbe River snow isolate Iso26 prokMSA_id:25630 Rhizobium sp. N1 prokMSA_id:32754 sludge A7 prokMSA_id:38122 Mesorhizobium sp. WG prokMSA_id:38141 Pseudaminobacter salicylatoxidans strain KTC001 prokMSA_id:49052 clone COX1 prokMSA_id:52697 Sinorhizobium sp. FJ38 37D AF364852 prokMSA_id:63530 Mesorhizobium sp. PRF86 complete AY117620 prokMSA_id:66931 clone SHA-85 prokMSA_id:69342 Mesorhizobium sp. CCBAU25126 AY147203 prokMSA_id:83113 Mesorhizobium sp. 'Smarlab BioMol-2302657' AY230775 prokMSA_id:87097 Mesorhizobium sp. Leb-4 AF509913 prokMSA_id:87262 Mesorhizobium sp. Loc-1 AF509929 prokMSA_id:87396 Mesorhizobium sp. Rop-1 AF509921 prokMSA_id:87441 Mesorhizobium sp. Rop-4 AF509915 prokMSA_id:87647 Mesorhizobium sp. Amf-4 AF509923 prokMSA_id:87700 Mesorhizobium sp. Leb-1 AF509910 prokMSA_id:87919 Mesorhizobium sp. Amf-5 AF509930 prokMSA_id:90640 Aminobacter sp. COX AY307924 prokMSA_id:91742 Pseudaminobacter sp. mp-1 AY331575 prokMSA_id:93996 alpha clone KCM-B-5 AJ581584 2.28.1.6.16.7512 OTU 2 seqs prokMSA_id:26653 alpha MERTZ_0CM_232 prokMSA_id:27640 alpha MERTZ_21CM_100 2.28.1.6.16.7520 OTU 1 seq prokMSA_id:5159 clone HstpL48 2.28.1.6.16.7540 OTU 2 seqs prokMSA_id:21543 alpha MERTZ_2CM_44 prokMSA_id:35444 alpha clone:TYM--2 2.28.1.6.16.7543 OTU 1 seq prokMSA_id:73511 alpha clone BIwii1 2.28.1.6.16.7635 OTU 1 seq prokMSA_id:44534 isolate HNSS21 2.28.1.6.16.7639 OTU 1 seq prokMSA_id:79338 sequences clone: IheB2-3 2.28.1.6.17 MSO.TIANSHANENSE 2 seqs 2.28.1.6.17.6876 OTU 1 seq prokMSA_id:5163 Rhizobium SH2672 str. SH2672 2.28.1.6.17.6874 OTU 1 seq prokMSA_id:5162 Mesorhizobium tianshanense str. A-1BS DSM 11417 2.28.1.6.18 BRUCELLA_ASSEMBLAGE 66 seqs 2.28.1.6.18.6671 OTU 1 seq prokMSA_id:23285 24-D degrading NHG3 strain NHG3 2.28.1.6.18.6757 OTU 25 seqs prokMSA_id:5177 Ochrobactrum anthropi str. isolate 1a. AJ242578 prokMSA_id:5178 Ochrobactrum tritici str. LAIII106. AJ242579 prokMSA_id:5179 Ochrobactrum anthropi LMG 5140 prokMSA_id:5183 Ochrobactrum anthropi LMG 3309. U88441 prokMSA_id:5184 Ochrobactrum anthropi LMG 3310 prokMSA_id:5185 Ochrobactrum anthropi LMG 3329 prokMSA_id:5186 Ochrobactrum anthropi LMG 2320 prokMSA_id:5187 Ochrobactrum sp. str. S1 prokMSA_id:5188 Ochrobactrum tritici str. SCII24. AJ242584 prokMSA_id:22778 Ochrobactrum sp. 3CB4 prokMSA_id:27684 Ochrobactrum sp. 4FB9 AF229875 prokMSA_id:30119 Ochrobactrum sp. 2FB10 prokMSA_id:39018 Ochrobactrum sp. 3CB5 prokMSA_id:45685 Ochrobactrum sp. 4FB14 prokMSA_id:48732 Ochrobactrum anthropi isolate GH 1568 AJ276036 prokMSA_id:49728 Ochrobactrum sp. isolate FRG11/sat prokMSA_id:56400 Ochrobactrum tritici isolate TG23 AF508091 prokMSA_id:62899 Ochrobactrum anthropi isolate ADV17 prokMSA_id:62900 Ochrobactrum anthropi isolate CLF19 AF526523 prokMSA_id:62906 Ochrobactrum anthropi isolate ADV16 AF526520 prokMSA_id:66248 Ochrobactrum tritici isolate TG13 AF508090 prokMSA_id:66250 Ochrobactrum tritici isolate TG161 prokMSA_id:66251 Ochrobactrum tritici isolate TJ3 prokMSA_id:74565 Ochrobactrum anthropi isolate ADV15 AF526519 prokMSA_id:91199 Ochrobactrum sp. mp-6 AY331580 2.28.1.6.18.6775 OTU 1 seq prokMSA_id:5194 str. SS5 2.28.1.6.18.6973 OTU 1 seq prokMSA_id:5180 Solomonas fluorantheni 2.28.1.6.18.6981 OTU 1 seq prokMSA_id:76582 Ochrobactrum gallinifaecis 2.28.1.6.18.6995 OTU 5 seqs prokMSA_id:5165 Ochrobactrum grignonense str. OgA9a prokMSA_id:24208 Ochrobactrum sp. 4FB13 prokMSA_id:31117 Ochrobactrum sp. PR17 complete prokMSA_id:70316 Ochrobactrum sp. LMG 20564 prokMSA_id:70645 Ochrobactrum sp. LMG 20570 2.28.1.6.18.7051 OTU 8 seqs prokMSA_id:5171 Mycoplana dimorpha IAM 13154 prokMSA_id:5313 Rhizobium gallicum str. CbS-17. AF008127 prokMSA_id:5330 Rhizobium sp. str. OK-50. D14515 prokMSA_id:5338 Rhizobium leguminosarum IAM 12609 . D12782 prokMSA_id:41578 Rhizobium sp. YAS34 AF239242 prokMSA_id:42970 clone HTD10 prokMSA_id:47066 Alpha A0721 prokMSA_id:87993 Rhizobium sp. Trr-9 AF510633 2.28.1.6.18.7116 OTU 16 seqs prokMSA_id:5169 Brucella melitensis ATCC 23444 prokMSA_id:5170 Brucella melitensis ATCC 25840 prokMSA_id:5175 Brucella melitensis ATCC 23456 prokMSA_id:5189 Brucella melitensis prokMSA_id:5192 Brucella abortus str. 544 prokMSA_id:5195 Ochrobactrum intermedium str. CNS 2-75 LMG 3301 prokMSA_id:5196 Ochrobactrum intermedium str. 609360 I prokMSA_id:5197 Ochrobactrum anthropi LMG 3306 prokMSA_id:5198 Ochrobactrum intermedium str. OiC8-6 prokMSA_id:5199 Ochrobactrum intermedium str. OiC8a prokMSA_id:5204 Brucella melitensis str. 11/19 prokMSA_id:57487 Ochrobactrum intermedium isolate ADV14 prokMSA_id:59527 Ochrobactrum tritici complete prokMSA_id:62908 Ochrobactrum intermedium isolate ADV21 prokMSA_id:68455 Symbiont cf. Rhizobium of Acromyrmex octospinosus prokMSA_id:72183 Ochrobactrum intermedium strain 0102 808 2.28.1.6.18.7146 OTU 1 seq prokMSA_id:43652 marine 2.28.1.6.18.7182 OTU 2 seqs prokMSA_id:58110 Ellin332 prokMSA_id:58112 Ellin329 2.28.1.6.18.7310 OTU 1 seq prokMSA_id:5164 Ochrobactrum sp. IFO 12950 2.28.1.6.18.7360 OTU 2 seqs prokMSA_id:38231 delta clone SM1G01 prokMSA_id:43604 delta clone SM1H08 2.28.1.6.18.7407 OTU 1 seq prokMSA_id:5190 clone HstpL89 2.28.1.6.18.7443 OTU 1 seq prokMSA_id:60179 clone TK34 2.28.1.6.19 DG.ZOOGLOEOIDES_SUBGROUP_I 9 seqs 2.28.1.6.19.6753 OTU 1 seq prokMSA_id:66900 Gram-negative DM 1 isolate DM 1 2.28.1.6.19.6789 OTU 5 seqs prokMSA_id:5205 Duganella zoogloeoides IAM 12669 prokMSA_id:5207 Duganella zoogloeoides ATCC 19623 prokMSA_id:55816 clone HP1B02 prokMSA_id:59345 clone HP1B28 prokMSA_id:66898 Gram-negative DM 2 isolate DM 2 2.28.1.6.19.7221 OTU 1 seq prokMSA_id:32425 alpha MERTZ_0CM_187 2.28.1.6.19.7442 OTU 2 seqs prokMSA_id:5208 Pacific Ocean station 16 100m depth clone prokMSA_id:71220 sp. amplified from marine plankton 5' end clone NH16-2A 2.28.1.6.20 SRH.FREDII_SUBGROUP 73 seqs 2.28.1.6.20.6641 OTU 1 seq prokMSA_id:5250 clone HstpL46 2.28.1.6.20.6683 OTU 32 seqs prokMSA_id:5209 Sinorhizobium terangae LMG 7834 prokMSA_id:5210 Sinorhizobium saheli LMG 7837 prokMSA_id:5217 Sinorhizobium fredii ATCC 35423 prokMSA_id:5231 Sinorhizobium sp. HAMBI 1552 prokMSA_id:5249 Sinorhizobium teranga LMG 6463 prokMSA_id:5255 Sinorhizobium fredii LMG 6217 prokMSA_id:5256 Sinorhizobium MSMC310 str. MSMC310 prokMSA_id:5258 Sinorhizobium sp. HAMBI 1489 prokMSA_id:5260 Sinorhizobium xinjiangensis IAM 14142 prokMSA_id:16617 Sinorhizobium sp. M3A strain M3A AJ298869 prokMSA_id:20311 Sinorhizobium xinjiangensis strain Rx22 AF250353 prokMSA_id:24151 Sinorhizobium sp. 15C-4 AF268072 prokMSA_id:24812 Sinorhizobium sp. Rch-9813 isolate Rch-9813 AJ417088 prokMSA_id:26055 Sinorhizobium morelense complete prokMSA_id:32607 Sinorhizobium xinjiangensis strain CCBAU830804 prokMSA_id:39113 Sinorhizobium xinjiangensis complete prokMSA_id:39392 Sinorhizobium sp. ORS1231 strain ORS1231 LMG 15307 AJ295076 prokMSA_id:39445 Sinorhizobium sp. Rch-9868 isolate Rch-9868 AJ417086 prokMSA_id:42233 Sinorhizobium sp. C9 prokMSA_id:43632 Sinorhizobium sp. RAT902 strain RAT902 R8390 AJ295072 prokMSA_id:51380 Sinorhizobium sp. S005 prokMSA_id:52806 Sinorhizobium xinjiangensis strain CCBAU110 prokMSA_id:59132 Rhizobium sp. JH1 prokMSA_id:59133 Rhizobium sp. AB3 prokMSA_id:66158 Sinorhizobium sp. CFNEI 156 prokMSA_id:71225 Sinorhizobium terangae strain ORS1254 LMG 15319 prokMSA_id:74392 Sinorhizobium sp. ORS1236 strain ORS1236 LMG 18076 AJ295077 prokMSA_id:74439 Sinorhizobium sp. ORS1085 strain ORS1085 LMG 15292 prokMSA_id:83138 Sinorhizobium fredii strain USDA205 AY260149 prokMSA_id:83976 Sinorhizobium fredii strain HH103 AY260145 prokMSA_id:85246 Sinorhizobium fredii strain HH003 AY260144 prokMSA_id:85533 Sinorhizobium fredii strain USDA257 AY260150 2.28.1.6.20.6704 OTU 1 seq prokMSA_id:43818 alpha MERTZ_21CM_29 2.28.1.6.20.6702 OTU 1 seq prokMSA_id:49903 alpha clone SM1D09 2.28.1.6.20.6725 OTU 14 seqs prokMSA_id:5220 Sinorhizobium meliloti IAM 12611 prokMSA_id:5221 Sinorhizobium meliloti str. 3DOa2 ATCC 9930 . X77121 prokMSA_id:5226 Sinorhizobium meliloti LMG 6133 prokMSA_id:5227 Sinorhizobium MSMC411 str. MSMC411 prokMSA_id:5232 Rhizobium XJ96060 str. XJ96060 prokMSA_id:5233 Rhizobium XJ96408 str. XJ96408 prokMSA_id:5245 Sinorhizobium meliloti IAM 12611 prokMSA_id:27872 Sinorhizobium sp. S007 prokMSA_id:48966 Sinorhizobium meliloti strain ORS1044 LMG 15285 prokMSA_id:61016 Sinorhizobium meliloti strain WSM1701 prokMSA_id:64021 Sinorhizobium meliloti 1021 complete chromosome; segment 1/1 prokMSA_id:78604 Rhizobium sp. I6 prokMSA_id:82107 Sinorhizobium meliloti strain GVPV12 prokMSA_id:82287 Sinorhizobium meliloti strain LMTR32 2.28.1.6.20.6861 OTU 1 seq prokMSA_id:34931 Sinorhizobium indiaensis strain:Ra-3 2.28.1.6.20.6877 OTU 1 seq prokMSA_id:5257 Rhodobium PENDANT-9 2.28.1.6.20.6972 OTU 7 seqs prokMSA_id:5218 Ensifer adhaerens ATCC 33499 prokMSA_id:5219 Ensifer adhaerens ATCC 33212 prokMSA_id:27318 Sinorhizobium sp. JL84 prokMSA_id:30671 Arsenite-oxidizing NT-4 prokMSA_id:36972 Sinorhizobium sp. S002 AF285962 prokMSA_id:63199 Sinorhizobium adhaerens strain 5D19 prokMSA_id:64288 Ensifer adhaerens 2.28.1.6.20.7013 OTU 1 seq prokMSA_id:71591 clone 4-Org1-36 2.28.1.6.20.7070 OTU 1 seq prokMSA_id:39851 Elbe River snow isolate Iso39 2.28.1.6.20.7249 OTU 1 seq prokMSA_id:72411 Rhizobium sp. isolate PRLISY04 2.28.1.6.20.7255 OTU 7 seqs prokMSA_id:5259 str. KCB90. AJ229247 prokMSA_id:16976 oxSCC-1 prokMSA_id:89447 Alpha pACH81 AY297801 prokMSA_id:89669 Alpha pACH83 AY297803 prokMSA_id:89687 Alpha pACH74 AY297796 prokMSA_id:90170 Alpha pACH82 AY297802 prokMSA_id:90320 Alpha pACH79 AY297800 2.28.1.6.20.7300 OTU 1 seq prokMSA_id:74157 Unknown marine alpha JP57 2.28.1.6.20.7463 OTU 2 seqs prokMSA_id:38715 clone Tc11 prokMSA_id:41433 clone Tc19 AF445093 2.28.1.6.20.7614 OTU 1 seq prokMSA_id:54028 alpha MERTZ_21CM_255 2.28.1.6.20.7613 OTU 1 seq prokMSA_id:19385 WD2107 clone WD2107 2.28.1.6.21 BLB.CAPSULATUS_SUBGROUP 12 seqs 2.28.1.6.21.6649 OTU 8 seqs prokMSA_id:5267 Rhizobium giardinii str. H152 prokMSA_id:16351 soil clone 353-2 prokMSA_id:74374 Sinorhizobium sp. 9702-M4 prokMSA_id:75607 Rhizobium sp. DCP3 prokMSA_id:76783 Rhizobium sp. DCP2 prokMSA_id:78442 Rhizobium sp. M16 prokMSA_id:86944 Rhizobium sp. Aei-5 AF511492 prokMSA_id:97267 Rhizobium sp. NET30 AY427206 2.28.1.6.21.6729 OTU 1 seq prokMSA_id:32320 Alpha Kaza-29 2.28.1.6.21.6919 OTU 1 seq prokMSA_id:5263 Blastobacter capsulatus ATCC 43294 2.28.1.6.21.6931 OTU 1 seq prokMSA_id:5266 Blastobacter aggregatus ATCC 43293 2.28.1.6.21.6974 OTU 1 seq prokMSA_id:46647 Alpha Kaza-35 2.28.1.6.23 RHB.TROPICI_SUBGROUP 27 seqs 2.28.1.6.23.6770 OTU 24 seqs prokMSA_id:5273 Agrobacterium rhizogenes LMG 152 prokMSA_id:5275 Rhizobium tropici IAM 14206 prokMSA_id:5276 Rhizobium tropici str. IIA LMG 9517 prokMSA_id:5277 Rhizobium tropici CIAT 899 prokMSA_id:5278 Rhizobium leguminosarum str. C-O5 LMG 9518 prokMSA_id:5280 Rhizobium tropici prokMSA_id:5281 Agrobacterium rhizogenes IFO 13257 prokMSA_id:5282 Rhizobium tropici IFO 15247 . D11344 prokMSA_id:5283 Agrobacterium tumefaciens str. K-Ag-3 prokMSA_id:5284 Rhizobium genosp. Q str. BDV5102 prokMSA_id:5289 Agrobacterium rhizogenes IAM 13570 prokMSA_id:5292 Rhizobium sp. LMG 9509 prokMSA_id:5293 Agrobacterium tumefaciens str. Ch-Ag-4 prokMSA_id:17261 Rhizobium leguminosarum strain DASA23046 prokMSA_id:24266 Rhizobium leguminosarum strain DASA23002 prokMSA_id:29133 Rhizobium sp. PDA-1 prokMSA_id:47187 Rhizobium leguminosarum strain DASA23111 prokMSA_id:48790 Rhizobium leguminosarum strain DASA23052 prokMSA_id:63509 Rhizobium tropici strain PRF77 complete prokMSA_id:76567 Rhizobium tropici UPRM8033 prokMSA_id:80113 Rhizobium tropici EBRI 32 prokMSA_id:80813 Rhizobium etli EBRI 2 prokMSA_id:81692 Rhizobium sp. ORS217 prokMSA_id:82246 Rhizobium sp. ORS214 2.28.1.6.23.7145 OTU 1 seq prokMSA_id:5272 Rhizobium sp. str. BR 8802 LMG 10020 2.28.1.6.23.7457 OTU 1 seq prokMSA_id:5288 Rhizobium tropici LMG 10336 2.28.1.6.23.7478 OTU 1 seq prokMSA_id:5290 Rhizobium tropici LMG 9503 2.28.1.6.24 RHB.LEGUMINOSARUM_SUBGROUP 87 seqs 2.28.1.6.24.1 RHB.LEGU11_SUBGROUP 83 seqs 2.28.1.6.24.1.6871 OTU 1 seq prokMSA_id:5304 Rhizobium mongolense USDA 1832 2.28.1.6.24.1.7135 OTU 4 seqs prokMSA_id:5311 Rhizobium gallicum str. R602sp prokMSA_id:5312 Rhizobium gallicum str. CbS-1 prokMSA_id:5314 Rhizobium gallicum str. CbS-18 prokMSA_id:5315 Rhizobium gallicum str. FL27 2.28.1.6.24.1.7534 OTU 1 seq prokMSA_id:29952 sludge H6 2.28.1.6.24.1.7568 OTU 77 seqs prokMSA_id:5299 Rhizobium etli CFN 42 prokMSA_id:5301 Rhizobium etli str. SEMIA 0430 USDA 2667 prokMSA_id:5302 Rhizobium gallicum str. R602sp prokMSA_id:5303 Rhizobium CCBAU71462 CCBAU 71462 prokMSA_id:5305 Rhizobium mongolense USDA 1834 prokMSA_id:5306 Rhizobium mongolense USDA 1836 prokMSA_id:5308 Rhizobium sp. str. IS 123 prokMSA_id:5309 Rhizobium SH22623 str. SH22623 prokMSA_id:5316 Rhizobium etli str. TAL 182 USDA 9041 prokMSA_id:5320 Rhizobium mongolense USDA 1844 prokMSA_id:5322 Rhizobium mongolense USDA 1929 prokMSA_id:5325 Rhizobium leguminosarum IAM 12609 prokMSA_id:5331 Rhizobium 'USDA 1920' USDA 1920 prokMSA_id:5333 Rhizobium sp. str. HCNT 1 prokMSA_id:5334 Rhizobium leguminosarum USDA 2370 prokMSA_id:5352 Rhizobium leguminosarum LMG 8820 alpha purple prokMSA_id:5353 Rhizobium leguminosarum str. Rlt E11 prokMSA_id:5354 Rhizobium leguminosarum str. Rtl E12 prokMSA_id:5357 Rhizobium leguminosarum USDA 2434 prokMSA_id:5358 Rhizobium leguminosarum USDA 2443 prokMSA_id:5359 Rhizobium leguminosarum USDA 2449 prokMSA_id:5360 Rhizobium leguminosarum USDA 2498 prokMSA_id:5361 Rhizobium leguminosarum USDA 2501 prokMSA_id:5362 Rhizobium 'ACCC 19667' ACCC 19667 prokMSA_id:5363 Rhizobium leguminosarum str. T24 prokMSA_id:5366 Rhizobium leguminosarum str. RCR 3644 USDA 2671. U29388 prokMSA_id:18033 Rhizobium sp. CIAT652 prokMSA_id:18988 Rhizobium sp. NZN7 prokMSA_id:20185 Rhizobium gallicum strain DASA12023 prokMSA_id:24023 Rhizobium etli strain CIAT151 prokMSA_id:24692 Rhizobium sp. AC100 prokMSA_id:26893 Rhizobium sp. WSM749 prokMSA_id:29072 Rhizobium sp. WSM1583 prokMSA_id:32366 Rhizobium sp. CIAT613 prokMSA_id:38301 Mesorhizobium sp. N36 prokMSA_id:41100 Rhizobium sp. He-853 prokMSA_id:41445 Rhizobium sp. strain rob20 prokMSA_id:45894 Rhizobium gallicum strain DASA12024 prokMSA_id:49093 Rhizobium gallicum strain DASA12005 prokMSA_id:56641 Rhizobium etli prokMSA_id:57882 Rhizobium sp. SH1718alt prokMSA_id:57888 Rhizobium sp. SH445 prokMSA_id:61021 Rhizobium leguminosarum prokMSA_id:63514 Rhizobium etli strain PRF126 complete prokMSA_id:63520 Rhizobium etli strain PRF230 complete prokMSA_id:77281 Rhizobium tropici strain PRF54 complete AF260275 prokMSA_id:79676 Rhizobium etli EBRI 27 prokMSA_id:80573 Rhizobium etli EBRI 3 prokMSA_id:81128 Rhizobium sp. Dz6-4 prokMSA_id:81330 Rhizobium sp. Dz12 prokMSA_id:81359 Rhizobium leguminosarum bv. trifolii strain ARPV02 prokMSA_id:81533 Rhizobium sp. Am4-1 prokMSA_id:81608 Rhizobium sp. Db4-14 AY210708 prokMSA_id:81629 Rhizobium sp. Am4-4 prokMSA_id:81786 Rhizobium sp. Dz8-2 prokMSA_id:82038 Rhizobium sp. Ak3-1 prokMSA_id:82148 Rhizobium sp. Gi7 prokMSA_id:82161 Rhizobium sp. Ad2 prokMSA_id:82352 Rhizobium sp. Dz6-14 prokMSA_id:86921 Rhizobium sp. Trr-2 AF510384 prokMSA_id:86928 Rhizobium sp. Trp-1 AF511506 prokMSA_id:87031 Rhizobium sp. Trr-6 AF510631 prokMSA_id:87112 Rhizobium sp. Trr-8 AF510632 prokMSA_id:87118 Rhizobium sp. Trp-4 AF511499 prokMSA_id:87165 Rhizobium sp. Trp-2 AF511490 prokMSA_id:87278 Rhizobium sp. Trp-5 AF511501 prokMSA_id:87341 Rhizobium sp. Gls-2 AF511495 prokMSA_id:87379 Rhizobium sp. Crj-3 AF511505 prokMSA_id:87461 Rhizobium sp. Trp-3 AF511491 prokMSA_id:87615 Rhizobium sp. Pis-1 AF510626 prokMSA_id:87755 Rhizobium sp. Trr-4 AF510628 prokMSA_id:87807 Rhizobium sp. Trr-7 AF510379 prokMSA_id:87852 Rhizobium sp. Trp-6 AF510377 prokMSA_id:88017 Rhizobium sp. Trr-5 AF510630 prokMSA_id:88041 Rhizobium sp. Vif-1 AF510629 prokMSA_id:91304 Ochrobactrum sp. mp-3 AY331577 prokMSA_id:91905 Brucella sp. mp-7 AY331581 2.28.1.6.24.2 RHB.LEGU13_SUBGROUP 3 seqs 2.28.1.6.24.2.6727 OTU 1 seq prokMSA_id:45429 Rhizobium sp. 1003 2.28.1.6.24.2.6813 OTU 1 seq prokMSA_id:5364 Rhizobium genosp. R str. BDV5365 2.28.1.6.24.2.7336 OTU 1 seq prokMSA_id:5335 Rhizobium leguminosarum USDA 2508 2.28.1.6.24.3 RHB.SP3618_SUBGROUP 1 seq 2.28.1.6.24.3.6847 OTU 1 seq prokMSA_id:5389 Rhizobium sp. str. RCR 3618D USDA 2947 2.28.1.6.25 RHB.HAINANENSE 1 seq 2.28.1.6.25.6634 OTU 1 seq prokMSA_id:5393 Rhizobium hainanense str. I66 CCBAU 57015 2.28.1.6.26 AGROBACTERIUM_SUBGROUP 158 seqs 2.28.1.6.26.1 DV.RIBOFLAVINA_SUBGROUP 19 seqs 2.28.1.6.26.1.6695 OTU 1 seq prokMSA_id:43964 Alpha RSppiC2 2.28.1.6.26.1.6697 OTU 1 seq prokMSA_id:78324 alpha clone:Rs-D84 2.28.1.6.26.1.6747 OTU 1 seq prokMSA_id:71382 feedlot manure A6 2.28.1.6.26.1.6823 OTU 1 seq prokMSA_id:75186 alpha clone JG34-KF-245 2.28.1.6.26.1.7020 OTU 1 seq prokMSA_id:19085 alpha clone BIfdii32 2.28.1.6.26.1.7127 OTU 1 seq prokMSA_id:64044 clone:CF84 2.28.1.6.26.1.7188 OTU 1 seq prokMSA_id:77616 alpha clone:Rs-B50 2.28.1.6.26.1.7190 OTU 1 seq prokMSA_id:31502 L3-17C4 2.28.1.6.26.1.7205 OTU 3 seqs prokMSA_id:19620 Manganese-oxidizing SI85-9A1 prokMSA_id:50645 strain R7951 prokMSA_id:77748 Fulvimarina litoralis strain HTCC2156 2.28.1.6.26.1.7229 OTU 1 seq prokMSA_id:61821 alpha clone CLi8 2.28.1.6.26.1.7227 OTU 1 seq prokMSA_id:5397 clone RF32 2.28.1.6.26.1.7298 OTU 1 seq prokMSA_id:84123 Marine HP22 2.28.1.6.26.1.7437 OTU 1 seq prokMSA_id:84082 clone CCM21a 2.28.1.6.26.1.7494 OTU 1 seq prokMSA_id:21290 Agricultural soil clone SC-I-78 2.28.1.6.26.1.7498 OTU 1 seq prokMSA_id:5403 clone BSV03 2.28.1.6.26.1.7626 OTU 2 seqs prokMSA_id:23947 Potato plant root clone RC-III-45 AJ252721 prokMSA_id:57724 Devosia neptuniae strain J1 2.28.1.6.26.2 LIB.SP_SUBGROUP 4 seqs 2.28.1.6.26.2.7501 OTU 1 seq prokMSA_id:5405 Liberobacter sp. str. Nelspruit 2.28.1.6.26.2.7603 OTU 3 seqs prokMSA_id:5407 Liberobacter sp. str. Okinama prokMSA_id:41828 Liberobacter endosymbiont of Diaphorina citri prokMSA_id:80801 Candidatus Liberibacter asiaticus 2.28.1.6.26.3 AG.TUMEFACIENS_SUBGROUP 106 seqs 2.28.1.6.26.3.6631 OTU 1 seq prokMSA_id:59889 alpha clone ccspost2181 2.28.1.6.26.3.6785 OTU 1 seq prokMSA_id:26211 clone d035 2.28.1.6.26.3.6798 OTU 4 seqs prokMSA_id:55671 Agrobacterium tumefaciens isolate TG12 prokMSA_id:56300 Agrobacterium tumefaciens isolate TG14 prokMSA_id:66244 Agrobacterium tumefaciens isolate S4 prokMSA_id:66245 Agrobacterium tumefaciens isolate N21 2.28.1.6.26.3.6804 OTU 1 seq prokMSA_id:5424 Rhizobium SH19312 str. SH19312 2.28.1.6.26.3.6964 OTU 91 seqs prokMSA_id:5409 Agrobacterium rubi IFO 13261 prokMSA_id:5410 Agrobacterium tumefaciens ATCC 4720 alpha purple prokMSA_id:5413 Agrobacterium tumefaciens str. ICPB TT111 LMG 196 prokMSA_id:5414 Agrobacterium rubi IAM 13569 prokMSA_id:5415 Agrobacterium tumefaciens str. IAM 13558 prokMSA_id:5416 Agrobacterium sp. str. AF3.10 prokMSA_id:5417 Agrobacterium tumefaciens IAM 14141 prokMSA_id:5418 Agrobacterium tumefaciens NCPPB 2437 prokMSA_id:5420 Agrobacterium tumefaciens IAM 13129 prokMSA_id:5421 Rhizobium N220 str. N220 prokMSA_id:5423 Rhizobium sp. str. Esparseta 3 prokMSA_id:5425 Agrobacterium radiobacter LMG 383 prokMSA_id:5426 Agrobacterium sp. LMG 11915 prokMSA_id:5427 Agrobacterium sp. LMG 11936. AJ130721 prokMSA_id:5428 Agrobacterium tumefaciens NCPPB 1650. D14506 prokMSA_id:5430 Agrobacterium rubi LMG 156 prokMSA_id:16302 Agrobacterium tumefaciens strain CFBP2712 AJ389886 prokMSA_id:17155 Agrobacterium tumefaciens strain CFBP2243 AJ389893 prokMSA_id:17589 Agrobacterium tumefaciens strain S377 AJ389896 prokMSA_id:18318 Alpha SA-2 prokMSA_id:19718 Agrobacterium tumefaciens strain CIP43-76 AJ389900 prokMSA_id:19912 Agrobacterium tumefaciens strain CFBP2885 AJ389887 prokMSA_id:20046 Agrobacterium tumefaciens strain CFBP2654 AJ389888 prokMSA_id:22329 Bradyrhizobium japonicum PRY62 complete AF239847 prokMSA_id:24597 Agrobacterium tumefaciens strain C58 AJ012209 prokMSA_id:24608 Agrobacterium tumefaciens strain Zutra3-1 AJ389901 prokMSA_id:26040 Agrobacterium tumefaciens strain NCPPB1641 AJ389902 prokMSA_id:26338 Agrobacterium tumefaciens strain IrT-JG-6 prokMSA_id:27184 Agrobacterium tumefaciens str. C58 linear chromosome section prokMSA_id:27851 Agrobacterium tumefaciens strain Zutra F/1 prokMSA_id:28007 Agrobacterium tumefaciens strain CFBP2879 AJ389892 prokMSA_id:29220 Agrobacterium tumefaciens strain 52 AF388033 prokMSA_id:29367 Agrobacterium tumefaciens strain CIP127-76 AJ389898 prokMSA_id:30092 Agrobacterium tumefaciens strain CFBP2717 AJ389890 prokMSA_id:31517 Agrobacterium tumefaciens strain O363 AJ389908 prokMSA_id:32570 Agrobacterium tumefaciens str. C58 circular chromosome secti prokMSA_id:32821 Agrobacterium tumefaciens strain 42 AF388030 prokMSA_id:33043 Q3-24C12 prokMSA_id:34745 Agrobacterium tumefaciens strain Mushin6 AJ389905 prokMSA_id:36063 Rhizobium sp. GH-2001 prokMSA_id:36496 Agrobacterium tumefaciens strain ICPB T37 AJ389906 prokMSA_id:37752 Arsenite-oxidizing BEN-5 prokMSA_id:40914 Agrobacterium tumefaciens strain CIP28-75 AJ389899 prokMSA_id:41643 Agrobacterium tumefaciens strain RV3 AJ389903 prokMSA_id:41750 Agrobacterium tumefaciens strain C58 circular chromosome com prokMSA_id:42402 Agrobacterium tumefaciens strain CIP111-78 AJ389897 prokMSA_id:42673 Agrobacterium tumefaciens str. C58 U. Washington chromosome prokMSA_id:43693 Agrobacterium tumefaciens strain CFBP2655 AJ389889 prokMSA_id:43713 Agrobacterium tumefaciens strain C58 circular chromosome sec prokMSA_id:44308 Agrobacterium tumefaciens str. C58 linear chromosome section prokMSA_id:44698 Agrobacterium tumefaciens str. C58 linear chromosome section prokMSA_id:45163 Agrobacterium tumefaciens strain CFBP2884 AJ389894 prokMSA_id:45881 Agrobacterium tumefaciens strain C58 circular chromosome sec prokMSA_id:47953 Bradyrhizobium japonicum PRY65 complete AF239848 prokMSA_id:49219 Agrobacterium tumefaciens strain CFBP2714 AJ389891 prokMSA_id:49778 Agrobacterium tumefaciens str. C58 linear chromosome section prokMSA_id:50078 Agrobacterium tumefaciens strain 0362 AJ389907 prokMSA_id:51761 Agrobacterium radiobacter strain ATCC19358 AJ389904 prokMSA_id:52254 Agrobacterium tumefaciens strain S56 AJ389895 prokMSA_id:52570 Rape rhizosphere tsb058 prokMSA_id:53312 Agrobacterium tumefaciens str. C58 circular chromosome secti prokMSA_id:53665 Rhizobium sp. IRBG 74 clone 3 and -23S intergenic spacer AF3 prokMSA_id:53840 Agrobacterium tumefaciens str. C58 U. Washington chromosome prokMSA_id:54011 Rhizobium sp. IRBG 74 clone 20 and -23S intergenic spacer AF prokMSA_id:57883 Rhizobium sp. SH1707neu AY141985 prokMSA_id:59901 alpha clone ccspost215 prokMSA_id:60998 Agrobacterium tumefaciens AF531767 prokMSA_id:63604 Agrobacterium tumefaciens AY043382 prokMSA_id:70205 Agrobacterium albertimagni complete prokMSA_id:76490 alpha clone S15A-MN24 prokMSA_id:77462 Rhizobium sp. IRBG 74 AF271637 prokMSA_id:77622 alpha clone:APe4_7 prokMSA_id:77636 alpha clone:APe9_6 prokMSA_id:79849 Agrobacterium tumefaciens EBRI 20 prokMSA_id:80249 Agrobacterium tumefaciens EBRI 25 prokMSA_id:81672 Rhizobium sp. Ho-1 AY210716 prokMSA_id:82847 rumen clone BS32 prokMSA_id:83717 Agrobacterium sp. JS71 prokMSA_id:87015 Rhizobium sp. Phr-8 AF510634 prokMSA_id:87376 Rhizobium sp. Gls-5 AF511503 prokMSA_id:87790 Rhizobium sp. Glm-15 AF510375 prokMSA_id:87877 Rhizobium sp. Glm-16 AF510373 prokMSA_id:88011 Rhizobium sp. Glm-14 AF510371 prokMSA_id:91034 Agrobacterium tumefaciens rrnD operon genes tRNA-Ile tRNA-Al prokMSA_id:91417 Agrobacterium tumefaciens operon genes tRNA-Ile tRNA-Ala 23S prokMSA_id:91604 Agrobacterium tumefaciens rrnB operon genes tRNA-Ile tRNA-Al prokMSA_id:91781 Agrobacterium tumefaciens rrnC operon genes tRNA-Ile tRNA-Al prokMSA_id:91971 Rhizobium daejeonense AY341343 prokMSA_id:94089 Agrobacterium tumefaciens strain UP-3 AY364329 prokMSA_id:95229 alpha clone NAB19 AY395023 prokMSA_id:95756 Agrobacterium sp. AHL 7 AY379979 2.28.1.6.26.3.7223 OTU 1 seq prokMSA_id:44538 clone d041 2.28.1.6.26.3.7314 OTU 1 seq prokMSA_id:60853 clone SG2-127 2.28.1.6.26.3.7334 OTU 5 seqs prokMSA_id:62396 alpha clone FTLM218 prokMSA_id:66246 Agrobacterium tumefaciens isolate TJ6 prokMSA_id:66249 Agrobacterium tumefaciens isolate C4 prokMSA_id:66958 Agrobacterium sp. PB prokMSA_id:75548 alpha clone Gitt-KF-163 AJ532682 2.28.1.6.26.3.7349 OTU 1 seq prokMSA_id:5412 Azospirillum sp. str. A1-3 DSM 1726 2.28.1.6.26.4 AG.VITIS_SUBGROUP 29 seqs 2.28.1.6.26.4.6765 OTU 1 seq prokMSA_id:33915 IrT-JG-65/15 2.28.1.6.26.4.6840 OTU 1 seq prokMSA_id:51992 soil clone 1315-2 2.28.1.6.26.4.6895 OTU 2 seqs prokMSA_id:77394 Rhizobium galegae strain SAFR-031 prokMSA_id:77532 Rhizobium galegae strain SAFR-030 2.28.1.6.26.4.7041 OTU 10 seqs prokMSA_id:5438 Rhizobium sp. str. OK-55 prokMSA_id:5444 Rhizobium galegae str. gal 1261 ATCC 43677 . D11343 prokMSA_id:5446 Rhizobium galegae IAM 13631 prokMSA_id:5448 Rhizobium galegae str. gal 1261 LMG 6214 prokMSA_id:5449 Rhizobium huautlense str. S02 prokMSA_id:5452 Rhizobium galegae str. NBIMTC 2246. Z79620 prokMSA_id:5454 Rhizobium galegae str. 59A2. AF025853 prokMSA_id:25256 Sinorhizobium sp. S009 prokMSA_id:38159 Rhizobium sp. strain rob18 prokMSA_id:87964 Rhizobium sp. Gls-3 AF511497 2.28.1.6.26.4.7113 OTU 1 seq prokMSA_id:5441 Allorhizobium undicola LMG 11875 2.28.1.6.26.4.7120 OTU 1 seq prokMSA_id:5447 Rhizobium sp. str. 113 2.28.1.6.26.4.7380 OTU 10 seqs prokMSA_id:5431 Agrobacterium vitis str. S4 prokMSA_id:5432 Agrobacterium vitis str. K309 NCPPB 3554 . D14502 prokMSA_id:5437 Agrobacterium vitis IAM 14140 prokMSA_id:5445 Agrobacterium vitis LMG 8750 prokMSA_id:5457 Agrobacterium vitis str. K309 NCPPB 3554 . U45329 prokMSA_id:25961 Agrobacterium vitus strain CFBP2617 prokMSA_id:31290 Agrobacterium vitis strain CFBP2678 AJ389910 prokMSA_id:33557 Agrobacterium vitus strain CFBP2736 AJ389912 prokMSA_id:46044 Agrobacterium vitus strain CFBP2737 AJ389913 prokMSA_id:98084 Agrobacterium vitis complete AB118158 2.28.1.6.26.4.7462 OTU 3 seqs prokMSA_id:5450 str. NT-25 prokMSA_id:5451 str. NT-26 prokMSA_id:22665 Rhizobium sp. TCK strain TCK AJ294417 2.28.1.6.27 BARTONELLA_SUBGROUP 51 seqs 2.28.1.6.27.7056 OTU 5 seqs prokMSA_id:16730 Bartonella sp. 99-BO1 prokMSA_id:25998 Bartonella schoenbuchii strain R1 prokMSA_id:27653 Bartonella sp. 91-4 prokMSA_id:42409 Bartonella sp. FC7049UT prokMSA_id:43831 Bartonella sp. Deer 159/660/1 2.28.1.6.27.7105 OTU 5 seqs prokMSA_id:60623 alpha clone AEGEAN_248 prokMSA_id:60650 alpha clone AEGEAN_239 AF406522 prokMSA_id:60651 alpha clone AEGEAN_230 AF406521 prokMSA_id:60657 alpha clone AEGEAN_187 prokMSA_id:60660 alpha clone AEGEAN_107 2.28.1.6.27.7384 OTU 1 seq prokMSA_id:5492 clone v9 2.28.1.6.27.7415 OTU 4 seqs prokMSA_id:5467 Bartonella quintana str. Fuller ATCC VR-358 prokMSA_id:5479 Bartonella quintana prokMSA_id:5495 Bartonella quintana str. Fuller ATCC VR-358 prokMSA_id:52696 Bartonella quintana 2.28.1.6.27.7492 OTU 1 seq prokMSA_id:37324 alpha CTD44B 2.28.1.6.27.7567 OTU 1 seq prokMSA_id:5504 str. BD7-3 2.28.1.6.27.7586 OTU 1 seq prokMSA_id:5503 clone HstpL56 2.28.1.6.27.7599 OTU 1 seq prokMSA_id:5468 str. DB1-14 2.28.1.6.27.7634 OTU 32 seqs prokMSA_id:5462 Bartonella alsatica str. 382 CIP 105477 prokMSA_id:5463 Bartonella grahamii str. V2 NCTC 12860 prokMSA_id:5464 Bartonella sp. str. peromysci prokMSA_id:5465 Bartonella vinsonii subsp. berkhoffii str. 93-C01 ATCC 51672 prokMSA_id:5466 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152 prokMSA_id:5469 Bartonella taylorii str. M6 NCTC 12861 . Z31350 prokMSA_id:5473 Bartonella henselae str. BA-TF prokMSA_id:5474 Bartonella bacilliformis ATCC 35685. U26258 prokMSA_id:5475 Bartonella sp. str. R-phy1 prokMSA_id:5481 Bartonella tribocorum str. IBS 506 CIP 105476 prokMSA_id:5482 Bartonella NVH1 str. nvh1 prokMSA_id:5483 Bartonella sp. str. C5rat prokMSA_id:5484 Bartonella sp. str. C7rat prokMSA_id:5485 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152 prokMSA_id:5487 Bartonella henselae str. Houston-1 prokMSA_id:5489 Bartonella henselae str. FR96/BK3 prokMSA_id:5490 Bartonella henselae str. FR96/BK38 prokMSA_id:5491 Bartonella henselae str. FR97/K7 prokMSA_id:5493 Bartonella koehlerae str. C-29 ATCC 700693 prokMSA_id:5496 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152 prokMSA_id:5498 Bartonella sp. str. C1phy prokMSA_id:5499 Bartonella sp. str. C4phy prokMSA_id:5500 Bartonella sp. str. N40 prokMSA_id:5501 Bartonella sp. str. R-phy2 prokMSA_id:5502 Bartonella elizabethae str. F9251; B91-002005 ATCC 49927 prokMSA_id:5505 Bartonella doshiae str. R18 NCTC 12862 prokMSA_id:17437 Bartonella vinsonii subsp. arupensis prokMSA_id:25328 Bartonella sp. IBS 206 prokMSA_id:46747 Bartonella birtlesii AF204274 prokMSA_id:49049 Bartonella capreoli prokMSA_id:52831 Bartonella henselae prokMSA_id:53421 Bartonella vinsonii subsp. berkhoffii ; -23S intergenic spac 2.28.1.7 CAULOBACTER_GROUP 126 seqs 2.28.1.7.2 PB.IMMOBILE_SUBGROUP 6 seqs 2.28.1.7.2.6929 OTU 1 seq prokMSA_id:5508 Phenylobacterium immobile str. E DSM 1986 2.28.1.7.2.6953 OTU 2 seqs prokMSA_id:5512 Caulobacter sp. str. FWC21 prokMSA_id:21440 Caulobacter 5C2 AF245033 2.28.1.7.2.7134 OTU 1 seq prokMSA_id:52287 Alpha A0902 2.28.1.7.2.7245 OTU 2 seqs prokMSA_id:46818 Caulobacter sp. H62 prokMSA_id:77947 alpha clone:APe9_7 2.28.1.7.3 CAU.VIBRIOIDES_SUBGROUP_II 49 seqs 2.28.1.7.3.6668 OTU 1 seq prokMSA_id:30983 WD233 clone WD233 2.28.1.7.3.7231 OTU 1 seq prokMSA_id:54353 WD297 clone WD297 2.28.1.7.3.7257 OTU 1 seq prokMSA_id:55270 clone D 2.28.1.7.3.7299 OTU 5 seqs prokMSA_id:5551 Caulobacter henricii ATCC 15253 prokMSA_id:5553 Caulobacter sp. str. FWC20 prokMSA_id:5558 Caulobacter henricii ATCC 15253 prokMSA_id:5560 Caulobacter henricii ATCC 15253 prokMSA_id:89320 Caulobacter sp. clone I-14 AF523056 2.28.1.7.3.7335 OTU 1 seq prokMSA_id:5517 str. TM 16 2.28.1.7.3.7355 OTU 1 seq prokMSA_id:75785 alpha clone JG37-AG-32 2.28.1.7.3.7385 OTU 28 seqs prokMSA_id:5523 Mycoplana segnis IFO 13240 prokMSA_id:5524 Caulobacter vibrioides NCIMB 9082. AB008531 prokMSA_id:5525 Caulobacter crescentus str. CB2 ATCC 15252. AJ227756 prokMSA_id:5526 Caulobacter sp. str. FWC06 prokMSA_id:5527 Caulobacter sp. str. FWC08 prokMSA_id:5528 Caulobacter sp. str. FWC16. AJ227763 prokMSA_id:5529 Caulobacter sp. str. FWC17 prokMSA_id:5530 Caulobacter sp. str. FWC18 prokMSA_id:5531 Caulobacter sp. str. FWC26 prokMSA_id:5532 Caulobacter sp. str. FWC28. AJ227769 prokMSA_id:5533 Caulobacter sp. str. FWC29 prokMSA_id:5534 Caulobacter sp. str. FWC31. AJ227771 prokMSA_id:5535 Caulobacter sp. str. FWC33 prokMSA_id:5536 Caulobacter sp. str. FWC35 prokMSA_id:5537 Caulobacter sp. str. FWC41 prokMSA_id:5538 Caulobacter sp. str. FWC42. AJ227776 prokMSA_id:5539 Caulobacter sp. str. FWC45. AJ227777 prokMSA_id:5540 Caulobacter vibrioides str. CB51 Neotype strain DSM 9893. AJ prokMSA_id:5541 Caulobacter vibrioides ATCC 11764. AJ227755 prokMSA_id:5543 Caulobacter vibrioides str. CB51 prokMSA_id:5544 Caulobacter segnis str. MBIC2835 prokMSA_id:5546 Caulobacter crescentus str. CB2 prokMSA_id:5548 Caulobacter sp. str. FWC02 prokMSA_id:36796 alpha clone BImi11 prokMSA_id:44545 Caulobacter crescentus strain CB15 ATCC 19089 AJ227757 prokMSA_id:47767 clone GL182.16 AY038618 prokMSA_id:74056 Caulobacter crescentus CB15 complete genome prokMSA_id:91213 G8 AY345391 2.28.1.7.3.7396 OTU 4 seqs prokMSA_id:5516 Caulobacter fusiformis ATCC 15257 prokMSA_id:5518 Caulobacter fusiformis ATCC 15257 prokMSA_id:5557 Caulobacter fusiformis ATCC 15257 prokMSA_id:47991 rape rhizosphere wr0031 2.28.1.7.3.7406 OTU 5 seqs prokMSA_id:17111 sludge H4 prokMSA_id:44246 sludge H29 prokMSA_id:46308 sludge S7 prokMSA_id:75034 alpha clone JG37-AG-6 prokMSA_id:76546 alpha clone JG37-AG-130 2.28.1.7.3.7562 OTU 1 seq prokMSA_id:5552 Afipia genosp. 14 str. G8999 2.28.1.7.3.7578 OTU 1 seq prokMSA_id:5554 Caulobacter sp. str. FWC38 2.28.1.7.4 ASC.EXCENTRICUS_SUBGROUP 6 seqs 2.28.1.7.4.6915 OTU 2 seqs prokMSA_id:5564 Asticcacaulis biprosthecium str. MBIC3411 ATCC 27554 prokMSA_id:25580 Asticcacaulis biprosthecium strain DSM 4723 2.28.1.7.4.6977 OTU 1 seq prokMSA_id:17344 Asticcacaulis biprosthecium 2.28.1.7.4.7486 OTU 2 seqs prokMSA_id:5563 Asticcacaulis excentricus ATCC 15261 prokMSA_id:24445 Asticcacaulis excentricus strain DSM 4724 2.28.1.7.4.7594 OTU 1 seq prokMSA_id:5562 Asticcacaulis excentricus ATCC 15261 2.28.1.7.5 CAU.SUBVIBRIOIDES_SUBGROUP 65 seqs 2.28.1.7.5.6656 OTU 3 seqs prokMSA_id:5600 Caulobacter sp. str. MCS24 prokMSA_id:5616 Caulobacter MBIC3983 str. MBIC3983 prokMSA_id:5621 Brevundimonas MCS17 str. MCS17 2.28.1.7.5.6781 OTU 6 seqs prokMSA_id:5568 Caulobacter intermedius str. CB63 ACM 2608 prokMSA_id:5578 Caulobacter intermedius str. CB63 ATCC 15262 prokMSA_id:5603 Brevundimonas vesicularis ACM 2862 prokMSA_id:5606 str. 4-8 prokMSA_id:78340 alpha clone:APe2_20 prokMSA_id:78399 alpha clone:APe2_51 2.28.1.7.5.6814 OTU 1 seq prokMSA_id:48143 alpha rcr_12 2.28.1.7.5.6904 OTU 16 seqs prokMSA_id:5571 Brevundimonas vesicularis IAM 12105 prokMSA_id:5575 Brevundimonas FWC14 str. FWC14 prokMSA_id:5584 Brevundimonas V4.BO.10 str. V4.BO.10 prokMSA_id:5585 Caulobacter sp. str. KA5 DSM 6812 prokMSA_id:5589 str. MBIC3034 prokMSA_id:5590 str. MBIC3032 prokMSA_id:5591 str. MBIC3033 prokMSA_id:5592 str. MBIC3036 prokMSA_id:5607 unnamed organism prokMSA_id:5611 Brevundimonas vesicularis LMG 11141 prokMSA_id:5613 str. MBIC3029 prokMSA_id:20726 Brevundimonas sp. ikaite c3 isolate ikaite c3 prokMSA_id:46088 Blackwater bioreactor BW23 prokMSA_id:73480 Brevundimonas sp. LMG 19834 strain LMG 19834 prokMSA_id:75508 alpha clone S15A-MN37 prokMSA_id:82124 Brevundimonas vesicularis 2.28.1.7.5.6909 OTU 10 seqs prokMSA_id:5572 Brevundimonas diminuta ATCC 11568 prokMSA_id:5593 Brevundimonas diminuta prokMSA_id:5596 Brevundimonas diminuta LMG 2089 prokMSA_id:5597 Brevundimonas diminuta LMG 2337. AJ227779 prokMSA_id:5598 Caulobacter sp. str. MBIC1405. AB016847 prokMSA_id:5599 str. HTA333 prokMSA_id:5615 Mycoplana bullata IAM 13153 prokMSA_id:5625 Brevundimonas bullata str. MBIC2745 prokMSA_id:87601 alpha clone SM2A11 AY293404 prokMSA_id:89703 Drinking water MB11 AY328842 2.28.1.7.5.6930 OTU 1 seq prokMSA_id:19977 WD282 clone WD282 2.28.1.7.5.6968 OTU 1 seq prokMSA_id:5595 Brevundimonas diminuta IAM 12691 2.28.1.7.5.7112 OTU 1 seq prokMSA_id:5594 Brevundimonas diminuta IFO 3140 2.28.1.7.5.7359 OTU 14 seqs prokMSA_id:5579 Brevundimonas bacteroides str. CB7 LMG 15096 prokMSA_id:5586 Caulobacter sp. str. CB28 DSM 10670 prokMSA_id:5602 Caulobacter bacteroides ATCC 15254 prokMSA_id:5618 Brevundimonas FWC04 str. FWC04 prokMSA_id:5619 Brevundimonas FWC05 str. FWC05 prokMSA_id:5626 Caulobacter variabilis str. CB17 ATCC 15255 prokMSA_id:5627 Caulobacter subvibrioides subsp. albus ATCC 15265 prokMSA_id:5628 Caulobacter bacteroides NCIMB 9790 prokMSA_id:40068 Brevundimonas alba strain 20 prokMSA_id:43186 Brevundimonas variabilis strain ATCC 15255 prokMSA_id:49192 alpha clone SM2B07 prokMSA_id:69859 Brevundimonas sp. AP-2 prokMSA_id:71758 alpha strain OS-123B prokMSA_id:79008 Brevundimonas sp 2.28.1.7.5.7366 OTU 7 seqs prokMSA_id:5567 Caulobacter subvibrioides ATCC 15264 prokMSA_id:5617 Brevundimonas subvibrioides str. CB81 LMG 14903 prokMSA_id:5620 Brevundimonas FWC43 str. FWC43 prokMSA_id:5622 Caulobacter sp. str. CB66 DSM 10556 prokMSA_id:5623 Caulobacter sp. str. CB26 DSM 6811 prokMSA_id:5624 Caulobacter sp. str. CB35 DSM 10560 prokMSA_id:31667 rape rhizosphere wr0066 2.28.1.7.5.7425 OTU 1 seq prokMSA_id:50466 clone HTC6 2.28.1.7.5.7436 OTU 3 seqs prokMSA_id:5583 Brevundimonas FWC40 str. FWC40 prokMSA_id:21958 Brevundimonas intermedia prokMSA_id:63466 Brevundimonas sp. p22P 2.28.1.7.5.7549 OTU 1 seq prokMSA_id:50815 rcr_19 2.28.1.8 RHODOBACTER-RHODOVULUM-HYPHOMONAS-RICKETTSIA 961 seqs 2.28.1.8.1 RHODOBACTER_GROUP 530 seqs 2.28.1.8.1.1 ROS.LITORALIS_SUBGROUP 368 seqs 2.28.1.8.1.1.1 ROS.DENITRIFICANS_SUBGROUP 208 seqs 2.28.1.8.1.1.1.6652 OTU 1 seq prokMSA_id:45368 Roseobacter sp. clone Arctic96A-1 2.28.1.8.1.1.1.6686 OTU 1 seq prokMSA_id:50030 Roseobacter CtaxMed-50 2.28.1.8.1.1.1.6701 OTU 3 seqs prokMSA_id:35270 Roseobacter NAC11-3 prokMSA_id:69570 alpha clone DC11-80-2 prokMSA_id:74007 alpha clone DC5-80-3 2.28.1.8.1.1.1.6761 OTU 5 seqs prokMSA_id:17964 Roseobacter 667-19 isolate 667-19 prokMSA_id:75072 Sulfitobacter sp. PIC-70 isolate PIC-70 prokMSA_id:76222 Sulfitobacter sp. PIC-74 isolate PIC-74 prokMSA_id:76561 Sulfitobacter sp. PIC-72 isolate PIC-72 prokMSA_id:76775 Sulfitobacter sp. PIC-69 isolate PIC-69 2.28.1.8.1.1.1.6827 OTU 1 seq prokMSA_id:80289 Arctic sea ice ARK10013 2.28.1.8.1.1.1.6889 OTU 1 seq prokMSA_id:20261 TAYNAYA-14 2.28.1.8.1.1.1.6903 OTU 1 seq prokMSA_id:46473 clone 4-Org2-20 2.28.1.8.1.1.1.6980 OTU 14 seqs prokMSA_id:5632 str. SRF3. AJ002565 prokMSA_id:5652 Roseobacter denitrificans str. OCh 114 . M59063 prokMSA_id:5669 str. SRF2 prokMSA_id:5714 Ruegeria atlantica str. 1480 IAM 14463 . D88526 prokMSA_id:33581 Sulfitobacter sp. MA2824 AF186700 prokMSA_id:47852 Sulfitobacter SIC.8141 AF277511 prokMSA_id:50766 alpha CHAB-I-5 5' AJ240910 prokMSA_id:61109 Alpha MGP-80 prokMSA_id:68976 Alpha R2A57 ; tRNA-Ala and tRNA-Ile genes complete ; and 23S prokMSA_id:77756 clone s95 AY171343 prokMSA_id:77996 clone 38 AY172307 prokMSA_id:80962 Arctic sea ice ARK10021 prokMSA_id:93537 Tanella vestfoldensis strain LMG 22003T AJ582226 prokMSA_id:94079 Tanella vestfoldensis strain LMG 22006 AJ582227 2.28.1.8.1.1.1.6982 OTU 1 seq prokMSA_id:81023 clone BTM32 2.28.1.8.1.1.1.6999 OTU 6 seqs prokMSA_id:5648 alpha Shippagan prokMSA_id:80702 Arctic sea ice associated ARK10278 prokMSA_id:81324 Sulfitobacter sp. ANT9115 AY167322 prokMSA_id:81861 Roseobacter sp. ANT909 prokMSA_id:82006 Antarctic sea ice clone ANTXI/4_14-133 prokMSA_id:82225 Psychromonas sp. ANT9282b 2.28.1.8.1.1.1.7050 OTU 2 seqs prokMSA_id:61885 alpha clone R103-B9 AF449224 prokMSA_id:61886 alpha clone R103-B28 2.28.1.8.1.1.1.7072 OTU 2 seqs prokMSA_id:81992 Roseobacter sp. ANT9276a prokMSA_id:82344 Roseobacter sp. ANT9270 2.28.1.8.1.1.1.7111 OTU 1 seq prokMSA_id:33738 Alpha MC-1 2.28.1.8.1.1.1.7267 OTU 1 seq prokMSA_id:36124 alpha MERTZ_21CM_146 2.28.1.8.1.1.1.7277 OTU 2 seqs prokMSA_id:5649 str. B5-6 prokMSA_id:5650 str. B5-6 2.28.1.8.1.1.1.7279 OTU 1 seq prokMSA_id:41049 antarctic soil clone bh3.3 2.28.1.8.1.1.1.7311 OTU 1 seq prokMSA_id:48018 alpha clone:TYM--4 2.28.1.8.1.1.1.7331 OTU 1 seq prokMSA_id:31713 alpha clone MPD-20 2.28.1.8.1.1.1.7363 OTU 1 seq prokMSA_id:49670 clone KS14 2.28.1.8.1.1.1.7364 OTU 8 seqs prokMSA_id:5640 Sulfitobacter DSS-2 str. DSS-2 prokMSA_id:5642 str. S34 prokMSA_id:19696 strain R7706 prokMSA_id:29924 Sulfitobacter brevis strain Ekho Lake-162 prokMSA_id:30176 Abyssal strain AIII3 prokMSA_id:75228 Sulfitobacter sp. LM-16 isolate LM-16 prokMSA_id:76761 Sulfitobacter sp. BIO-7 isolate BIO-7 prokMSA_id:85401 Sulfitobacter pontiacus isolate 4301-10/3 2.28.1.8.1.1.1.7383 OTU 4 seqs prokMSA_id:17447 Roseobacter sp. KT0202a prokMSA_id:36728 marine alpha AS-21 prokMSA_id:56667 Rhodobacteraceae AP-27 prokMSA_id:84036 Marine arctic deep-sea HD9 2.28.1.8.1.1.1.7405 OTU 1 seq prokMSA_id:79185 sequences clone: IndB1-58 2.28.1.8.1.1.1.7433 OTU 32 seqs prokMSA_id:5631 Sulfitobacter mediterraneus str. CH-B427 prokMSA_id:5644 Roseobacter litoralis ATCC 49566 prokMSA_id:5651 Roseobacter denitrificans str. OCh 114 prokMSA_id:5653 Roseobacter denitrificans str. OCh 114 prokMSA_id:5708 clone TAYNAYA-15. AF142961 prokMSA_id:18019 Rhodobacter group CtaxMed-9 AF259605 prokMSA_id:21484 alpha SIC.10342 AF277525 prokMSA_id:26162 alpha SIC.8142 AF277512 prokMSA_id:28230 Antarctic seawater R7371 prokMSA_id:30122 marine alpha AS-22 AJ391183 prokMSA_id:32299 Staleya guttiformis strain Ekho Lake-38 prokMSA_id:35200 Marine SCRIPPS_101 AF359537 prokMSA_id:46595 Roseobacter 667-4 isolate 667-4 prokMSA_id:48599 strain R7091 prokMSA_id:52404 Marine ATAM173a_17 prokMSA_id:70710 clone 4-Org1-37 AF143824 prokMSA_id:74900 Sulfitobacter sp. HEL-78 isolate HEL-78 AJ534230 prokMSA_id:75085 Staleya sp. LM-9 isolate LM-9 AJ534234 prokMSA_id:75251 Staleya sp. LM-10 isolate LM-10 prokMSA_id:75623 Staleya sp. LM-7 isolate LM-7 prokMSA_id:75812 Sulfitobacter sp. DFL-23 isolate DFL-23 prokMSA_id:76030 Sulfitobacter sp. PIC-76 isolate PIC-76 prokMSA_id:76156 Sulfitobacter sp. HEL-76 isolate HEL-76 AJ534228 prokMSA_id:76632 Sulfitobacter sp. DFL-10 isolate DFL-10 prokMSA_id:76795 Sulfitobacter sp. HEL-45 isolate HEL-45 AJ534226 prokMSA_id:76942 Sulfitobacter sp. BIO-205 isolate BIO-205 AJ534209 prokMSA_id:77822 clone 311 AY172273 prokMSA_id:78686 Sulfitobacter deliciae strain KMM 3554 AY180102 prokMSA_id:78878 Sulfitobacter dubium strain KMM 3584 prokMSA_id:79547 Alpha UMB3C prokMSA_id:83854 Oceanibulbus indoliflex strain Hel 45 prokMSA_id:85267 Sulfitobacter sp. 4318-8/2 isolate 4318-8/2 2.28.1.8.1.1.1.7453 OTU 1 seq prokMSA_id:75731 Sulfitobacter sp. BIO-11 isolate BIO-11 2.28.1.8.1.1.1.7499 OTU 1 seq prokMSA_id:32000 Alpha 'ANG clone 1995' 2.28.1.8.1.1.1.7511 OTU 1 seq prokMSA_id:5629 symbiont of Prionitis lanceolata gall 2.28.1.8.1.1.1.7560 OTU 112 seqs prokMSA_id:5630 Roseobacter Prionitis decipiens symbiont prokMSA_id:5659 Roseobacter J2W prokMSA_id:5660 Roseobacter J8W prokMSA_id:17095 Alpha RS29AI4 AF190210 prokMSA_id:17479 marine D033 AF177566 prokMSA_id:19633 Rhodobacter group clone D099 AF367395 prokMSA_id:20851 alpha 128-27 AF473920 prokMSA_id:21624 Rhodobacter group clone D128 AF367402 prokMSA_id:21726 SW8 AB047143 prokMSA_id:23231 Humic substances enrichment clone A32 AF231433 prokMSA_id:23678 marine D019 AF177558 prokMSA_id:23711 Rhodobacter group clone D129 AF367403 prokMSA_id:23794 alpha 128-41 AF473928 prokMSA_id:26535 marine D131 AF177569 prokMSA_id:26869 marine D006 AF177550 prokMSA_id:27011 marine D013 AF177553 prokMSA_id:27347 marine D021 AF177559 prokMSA_id:27727 marine 5' U84033 prokMSA_id:28125 Rhodobacter group clone D103 AF367399 prokMSA_id:28489 marine 5' U84029 prokMSA_id:29993 marine U84026 prokMSA_id:33654 Roseobacter kpc14f AF194398 prokMSA_id:34644 Rhodobacter group clone D058 AF367385 prokMSA_id:35806 marine 5' U84030 prokMSA_id:36176 marine D016 AF177556 prokMSA_id:37297 marine D015 AF177555 prokMSA_id:38977 marine D005 AF177549 prokMSA_id:39602 Roseobacter sp. Prionitis filiformis symbiont prokMSA_id:40701 marine 5' U84024 prokMSA_id:42665 clone KS5 prokMSA_id:43595 marine D014 AF177554 prokMSA_id:43926 marine 5' U84023 prokMSA_id:44395 Agrobacterium kpc11f AF194392 prokMSA_id:45040 DMSP-degrading marine JA13 AF296147 prokMSA_id:46669 marine alpha BY-74 AJ298352 prokMSA_id:46840 marine D028 AF177562 prokMSA_id:47573 marine D030 AF177564 prokMSA_id:47757 Rhodobacter group clone D045 AF367381 prokMSA_id:48437 marine U84036 prokMSA_id:49265 Alpha SOGA18 AJ244795 prokMSA_id:49308 marine alpha BY-95 AJ298353 prokMSA_id:50041 Alpha SOGA3 AJ244781 prokMSA_id:54244 Slope strain DIII4* prokMSA_id:55927 alpha SH-316 AY095922 prokMSA_id:56424 alpha pA-13 AY095612 prokMSA_id:56502 Rhodobacter group SH-4 AY095898 prokMSA_id:56559 SB-46-DB AJ319855 prokMSA_id:57753 Marine alpha WTs-5 AJ512211 prokMSA_id:59165 Roseobacter sp. RED85 AY136135 prokMSA_id:59166 Roseobacter gallaeciensis AY136134 prokMSA_id:59224 SB-14/19-LD AJ319863 prokMSA_id:59240 SB-8/30-AG AJ319843 prokMSA_id:61951 Roseobacter-like sp. V4.ME.23 prokMSA_id:64897 alpha pT-425 AY095884 prokMSA_id:64908 alpha pT-402 AY095875 prokMSA_id:64984 Rhodobacter group SH-323 AY095926 prokMSA_id:65004 alpha SH-106 AY095904 prokMSA_id:65055 Rhodobacter group HI-12 AY095765 prokMSA_id:65067 alpha NL-148R AY095752 prokMSA_id:65069 alpha NL-145R AY095749 prokMSA_id:65072 alpha NL-143 AY095745 prokMSA_id:65099 alpha NL-3 AY095715 prokMSA_id:65121 Rhodobacter group OR-117 AY095686 prokMSA_id:65126 Rhodobacter group OR-115 AY095685 prokMSA_id:65131 Rhodobacter group OR-104 AY095678 prokMSA_id:65140 alpha OS2K-17 AY095666 prokMSA_id:65153 alpha pA-22 AY095617 prokMSA_id:65154 alpha pA-14 AY095613 prokMSA_id:65159 alpha pA-8 AY095611 prokMSA_id:65161 alpha pA-5 AY095608 prokMSA_id:65163 alpha pA-1 AY095604 prokMSA_id:65171 alpha PPO-15 AY095592 prokMSA_id:65186 Rhodobacter group WR-44 AY095573 prokMSA_id:68669 Prionitis sp. GIg-5 isolate GIg-5 AJ439357 prokMSA_id:68670 Ruegeria sp. GPl-3 isolate GPl-3 AJ439359 prokMSA_id:68671 Ruegeria sp. RTs-2 isolate RTs-2 AJ439356 prokMSA_id:68672 Ruegeria sp. SPl-1 isolate SPl-1 AJ439358 prokMSA_id:68674 Ruegeria sp. GIg-3 isolate GIg-3 AJ439360 prokMSA_id:68675 Ruegeria sp. WRs-11 isolate WRs-11 AJ439355 prokMSA_id:69379 alpha clone A191-7 AF544896 prokMSA_id:69697 alpha isolate DGGE band C14 AF466885 prokMSA_id:70578 alpha isolate DGGE band C40 AF466921 prokMSA_id:71324 Ruegeria sp. TCg-3 isolate TCg-3 AJ515038 prokMSA_id:71580 Roseobacter sp. KT0917 prokMSA_id:71804 Slope strain EI1* prokMSA_id:72021 Rhodobacteraceae LSc-10 isolate LSc-10 AJ515035 prokMSA_id:72376 Antarctobacter sp. LTs-7 isolate LTs-7 AJ515037 prokMSA_id:72563 alpha isolate DGGE band A'5 AF466902 prokMSA_id:72959 marine alpha AY-58 AJ298351 prokMSA_id:74444 alpha clone A191-1 AF544890 prokMSA_id:74518 Ruegeria sp. GIg-9 isolate GIg-9 AJ515044 prokMSA_id:74704 alpha QSSC9L-6 AF170784 prokMSA_id:74754 marine D009 AF177551 prokMSA_id:75436 alpha DGGE band GL2.3 AF344295 prokMSA_id:77644 clone 320 AY172276 prokMSA_id:78028 clone 113 AY172274 prokMSA_id:79622 clone BMS18 AY193216 prokMSA_id:79969 clone BMS49 AY193228 prokMSA_id:80376 clone BMS33 AY193224 prokMSA_id:80431 clone BTM82 AY193282 prokMSA_id:80890 clone BMS82 AY193231 prokMSA_id:80899 clone BMS21 AY193217 prokMSA_id:80948 clone BMS13 prokMSA_id:81551 gamma clone DBS7 AF466710 prokMSA_id:82740 alpha isolate SA-5 AJ495605 prokMSA_id:82998 Marine arctic deep-sea HH8 AJ557864 prokMSA_id:83010 Alpha UST010723-016 AY241410 prokMSA_id:83361 alpha clone FBE5 AY263714 prokMSA_id:83713 alpha clone FBR14 AY263728 prokMSA_id:88691 alpha clone A115-15 AY323136 prokMSA_id:91288 alpha DGGE Band 12 AY258610 prokMSA_id:91878 Roseobacter sp. TM1035 AY332660 2.28.1.8.1.1.1.7627 OTU 1 seq prokMSA_id:32086 Rhodobacter CtaxPhil-8 2.28.1.8.1.1.1.7653 OTU 1 seq prokMSA_id:34872 Ruegeria sp. UST991130-042 2.28.1.8.1.1.2 RG.ALGICOLA_SUBGROUP 69 seqs 2.28.1.8.1.1.2.6629 OTU 1 seq prokMSA_id:5658 Roseobacter QSSC9-8 str. QSSC9-8 2.28.1.8.1.1.2.6642 OTU 1 seq prokMSA_id:25112 Marine isolate SRF1 2.28.1.8.1.1.2.6679 OTU 1 seq prokMSA_id:80690 Arctic sea ice ARK10226 2.28.1.8.1.1.2.6684 OTU 2 seqs prokMSA_id:30481 marine prokMSA_id:35714 marine 2.28.1.8.1.1.2.6691 OTU 2 seqs prokMSA_id:21303 Alpha Y3F prokMSA_id:27170 Marine Y4I 2.28.1.8.1.1.2.6784 OTU 3 seqs prokMSA_id:81400 Roseobacter sp. ANT9234 prokMSA_id:81559 Roseobacter sp. ANT9274 prokMSA_id:82275 Roseobacter sp. ANT9240 2.28.1.8.1.1.2.6796 OTU 5 seqs prokMSA_id:29579 Roseobacter NAC11-1 prokMSA_id:29665 alpha clone CD2AC12 AY038571 prokMSA_id:40328 alpha clone CD2H3 AY038469 prokMSA_id:43676 alpha clone SIMO CL-S6-172 AF439417 prokMSA_id:45067 Roseobacter NAC1-1 2.28.1.8.1.1.2.6802 OTU 1 seq prokMSA_id:21918 clone KS97 2.28.1.8.1.1.2.6848 OTU 1 seq prokMSA_id:27774 Hydrothermal vent strain NF18 2.28.1.8.1.1.2.6862 OTU 1 seq prokMSA_id:61254 alpha isolate PH32 2.28.1.8.1.1.2.6888 OTU 1 seq prokMSA_id:55371 Hydrothermal vent strain TB66 2.28.1.8.1.1.2.6932 OTU 1 seq prokMSA_id:31026 clone KS7 2.28.1.8.1.1.2.6955 OTU 8 seqs prokMSA_id:44060 Roseobacter NAC11-6 prokMSA_id:61128 Alpha MGP-7 prokMSA_id:68973 alpha MB11C09 ; tRNA-Ile and tRNA-Ala genes complete ; and 2 prokMSA_id:79810 Arctic sea ice ARK10233 prokMSA_id:80429 Arctic sea ice ARK10055 prokMSA_id:80486 clone ARKIA-77 prokMSA_id:81959 Roseobacter sp. ANT9082 prokMSA_id:82093 Roseobacter sp. ANT9283 2.28.1.8.1.1.2.6960 OTU 1 seq prokMSA_id:75789 Alpha GL2 2.28.1.8.1.1.2.7026 OTU 10 seqs prokMSA_id:5654 Roseobacter gallaeciensis str. BS107 CIP 105210 prokMSA_id:5657 str. 303 prokMSA_id:16469 Roseobacter sp. JLN-A020 strain prokMSA_id:29620 Marine alpha BBAT2 prokMSA_id:40286 marine PP-154 prokMSA_id:41631 Unknown marine alpha JP88.1 prokMSA_id:44513 marine alpha AS-11 prokMSA_id:45273 Ruegeria sp. MB2 prokMSA_id:76304 Alpha HY-103 isolate HY-103 prokMSA_id:83687 Rhodobacteraceae T5 2.28.1.8.1.1.2.7033 OTU 1 seq prokMSA_id:62509 Rhodobacter group clone LA1-B32N 2.28.1.8.1.1.2.7046 OTU 3 seqs prokMSA_id:20502 Marine ATAM407_56 prokMSA_id:28150 Roseobacter 667-2 isolate 667-2 prokMSA_id:29429 Unknown marine alpha JP7.1 AY007679 2.28.1.8.1.1.2.7054 OTU 2 seqs prokMSA_id:5655 Roseobacter ISM str. ISM prokMSA_id:83398 Rhodobacteraceae T11 2.28.1.8.1.1.2.7061 OTU 1 seq prokMSA_id:5667 clone HstpL28 2.28.1.8.1.1.2.7062 OTU 1 seq prokMSA_id:5668 clone HstpL78 2.28.1.8.1.1.2.7079 OTU 1 seq prokMSA_id:5676 clone ORGANIC-12 2.28.1.8.1.1.2.7082 OTU 1 seq prokMSA_id:5677 Roseovarius ORGANIC-11 2.28.1.8.1.1.2.7099 OTU 1 seq prokMSA_id:5679 unnamed organism 2.28.1.8.1.1.2.7098 OTU 1 seq prokMSA_id:5678 clone EKHO-15 2.28.1.8.1.1.2.7189 OTU 1 seq prokMSA_id:33017 marine 2.28.1.8.1.1.2.7224 OTU 1 seq prokMSA_id:28284 Slope strain EI2 2.28.1.8.1.1.2.7233 OTU 1 seq prokMSA_id:26688 Roseobacter sp. isolate PRLISY03 2.28.1.8.1.1.2.7263 OTU 1 seq prokMSA_id:81687 Antarctic sea ice clone ANTXI/4_14-43 2.28.1.8.1.1.2.7272 OTU 1 seq prokMSA_id:45540 Ruegeria CtaxMed-39 2.28.1.8.1.1.2.7329 OTU 1 seq prokMSA_id:5662 Ruegeria atlantica str. WNA2 2.28.1.8.1.1.2.7350 OTU 2 seqs prokMSA_id:42048 Hydrothermal vent strain AG33 prokMSA_id:49056 ECS2 AB041272 2.28.1.8.1.1.2.7354 OTU 1 seq prokMSA_id:22037 isolate HRV4# HpaAS2 2.28.1.8.1.1.2.7375 OTU 2 seqs prokMSA_id:5670 Ruegeria algicola str. ML4 ATCC 51441 prokMSA_id:5671 Ruegeria algicola str. FF2 ATCC 51442 2.28.1.8.1.1.2.7460 OTU 1 seq prokMSA_id:62731 alpha clone ML635J-2 2.28.1.8.1.1.2.7466 OTU 1 seq prokMSA_id:83188 Marine HP29w 2.28.1.8.1.1.2.7476 OTU 1 seq prokMSA_id:32029 Marine ALUS253_43 2.28.1.8.1.1.2.7493 OTU 1 seq prokMSA_id:81378 Roseobacter sp. ARK9990 2.28.1.8.1.1.2.7590 OTU 1 seq prokMSA_id:80030 Arctic sea ice ARK10109 2.28.1.8.1.1.2.7630 OTU 1 seq prokMSA_id:44621 ECS3 2.28.1.8.1.1.2.7636 OTU 1 seq prokMSA_id:52602 clone KS96 2.28.1.8.1.1.3 ANB.HELIOTHERMUS_SUBGROUP 6 seqs 2.28.1.8.1.1.3.6661 OTU 2 seqs prokMSA_id:75332 Methylarcula sp. BIO-24 isolate BIO-24 prokMSA_id:75890 Methylarcula sp. BIO-13 isolate BIO-13 2.28.1.8.1.1.3.7131 OTU 1 seq prokMSA_id:5680 str. LFR 2.28.1.8.1.1.3.7282 OTU 3 seqs prokMSA_id:5683 Antarctobacter heliothermus str. EL-219 DSM 11440 prokMSA_id:50247 Antarctobacter sp. 667-12 strain 667-12 prokMSA_id:73266 Marine ATAM173a_51 2.28.1.8.1.1.5 OCT.ANTARCTICUS_SUBGROUP 83 seqs 2.28.1.8.1.1.5.6630 OTU 1 seq prokMSA_id:46143 alpha 128-19L 2.28.1.8.1.1.5.6654 OTU 1 seq prokMSA_id:42895 alpha clone CD4D3 2.28.1.8.1.1.5.6664 OTU 1 seq prokMSA_id:5706 unnamed organism 2.28.1.8.1.1.5.6705 OTU 1 seq prokMSA_id:5702 clone HstpL95 2.28.1.8.1.1.5.6714 OTU 1 seq prokMSA_id:62503 Rhodobacter group clone PH-B13 2.28.1.8.1.1.5.6723 OTU 1 seq prokMSA_id:5709 clone EKHO-8 2.28.1.8.1.1.5.6751 OTU 1 seq prokMSA_id:5711 clone BURTON-19 2.28.1.8.1.1.5.6764 OTU 1 seq prokMSA_id:5713 clone BURTON-7 2.28.1.8.1.1.5.6769 OTU 1 seq prokMSA_id:5715 Silicibacter pomeroyi strain DSS-3 2.28.1.8.1.1.5.6772 OTU 4 seqs prokMSA_id:29287 Jannaschia helgolandensis strain Hel 10 AJ438157 prokMSA_id:75300 Jannaschia helgolandensis isolate HEL-43 AJ534225 prokMSA_id:75353 Jannaschia helgolandensis isolate HEL-26 AJ534224 prokMSA_id:79743 clone BTM13 2.28.1.8.1.1.5.6786 OTU 1 seq prokMSA_id:50418 alpha 128-47L 2.28.1.8.1.1.5.6805 OTU 1 seq prokMSA_id:33574 Filamentous photosynthetic Fl90-32 2.28.1.8.1.1.5.6818 OTU 1 seq prokMSA_id:41605 alpha clone MERTZ_0CM_153 2.28.1.8.1.1.5.6864 OTU 2 seqs prokMSA_id:19627 marine alpha AS-34 prokMSA_id:26286 marine alpha AS-35 2.28.1.8.1.1.5.6866 OTU 1 seq prokMSA_id:83098 Roseobacter sp. 4318-8/1 isolate 4318-8/1 2.28.1.8.1.1.5.6879 OTU 1 seq prokMSA_id:22858 Alpha NW4327 2.28.1.8.1.1.5.6883 OTU 6 seqs prokMSA_id:5716 str. MBIC1876 prokMSA_id:5718 Agrobacterium meteori IAM 14464 prokMSA_id:43019 Alpha SOGA1 prokMSA_id:46822 Alpha SOGA8 prokMSA_id:49437 Alpha SOGA14 prokMSA_id:51444 Alpha SOGA25 2.28.1.8.1.1.5.6984 OTU 2 seqs prokMSA_id:19540 alpha 128-41L prokMSA_id:41652 alpha 128-27L 2.28.1.8.1.1.5.7045 OTU 2 seqs prokMSA_id:5692 Roseobacter DSS-1 str. DSS-1 prokMSA_id:42922 Arctic seawater R7967 2.28.1.8.1.1.5.7069 OTU 1 seq prokMSA_id:61250 alpha isolate GRP21 2.28.1.8.1.1.5.7085 OTU 1 seq prokMSA_id:5719 Silicibacter lacuscaerulensis str. ITI-1157 2.28.1.8.1.1.5.7093 OTU 1 seq prokMSA_id:68668 alpha LTs-4 isolate LTs-4 2.28.1.8.1.1.5.7140 OTU 7 seqs prokMSA_id:76234 Methylarcula sp. DT-12 isolate DT-12 prokMSA_id:80016 clone ARKCH2Br2-100 prokMSA_id:80857 clone ARKDMS-62 AF468242 prokMSA_id:80873 clone ARKCH2Br2-28 AF468226 prokMSA_id:84473 Antarctic R-8904 strain R-8904 prokMSA_id:93357 Tanella salinilacus strain LMG 22002 AJ582229 prokMSA_id:94029 Tanella salinilacus strain LMG 22000 AJ582228 2.28.1.8.1.1.5.7160 OTU 1 seq prokMSA_id:5694 clone EKHO-18 2.28.1.8.1.1.5.7158 OTU 1 seq prokMSA_id:5691 Octadecabacter IC141 str. IC141 2.28.1.8.1.1.5.7162 OTU 1 seq prokMSA_id:5695 Octadecabacter BURTON-33 2.28.1.8.1.1.5.7270 OTU 1 seq prokMSA_id:54491 alpha RSHD3E4 2.28.1.8.1.1.5.7293 OTU 1 seq prokMSA_id:74722 alpha isolate TH1 2.28.1.8.1.1.5.7301 OTU 1 seq prokMSA_id:5703 Roseobacter DSS-8 str. DSS-8 2.28.1.8.1.1.5.7429 OTU 4 seqs prokMSA_id:26995 Ruegeria aff. gelatinovorans ch611 strain ch611 prokMSA_id:33660 Roseobacter sp. isolate PRLIST02 Y15339 prokMSA_id:33766 Roseobacter 253-16 isolate 253-16 prokMSA_id:63182 alpha isolate DGGE band A-9 AY117767 2.28.1.8.1.1.5.7432 OTU 6 seqs prokMSA_id:17537 marine ZD0207 prokMSA_id:41244 Roseobacter NAC11-7 prokMSA_id:92383 alpha clone PLY-P2-54 AY354837 prokMSA_id:92494 alpha clone PLY-P2-3 AY354832 prokMSA_id:92539 alpha clone PLY-P2-1 AY354831 prokMSA_id:93014 alpha clone PLY-P2-45 AY354836 2.28.1.8.1.1.5.7527 OTU 1 seq prokMSA_id:31063 alpha CTD56B 2.28.1.8.1.1.5.7596 OTU 1 seq prokMSA_id:86328 Rhodobacteraceae R11 2.28.1.8.1.1.5.7602 OTU 25 seqs prokMSA_id:5690 Octadecabacter antarcticus str. 307 prokMSA_id:5697 Octadecabacter arcticus str. 238 prokMSA_id:79813 Arctic sea ice ARK10175-1 prokMSA_id:79937 Arctic sea ice associated ARK10126 prokMSA_id:80122 Arctic sea ice ARK10249 AF468377 prokMSA_id:80348 Arctic sea ice ARK10073 AF468361 prokMSA_id:80399 clone ARKICE-158 prokMSA_id:80544 Arctic sea ice ARK10285 prokMSA_id:80593 Arctic sea ice ARK10090 prokMSA_id:80710 Arctic sea ice ARK10176 prokMSA_id:80714 Arctic sea ice ARK10092 prokMSA_id:80723 Arctic sea ice ARK10026 prokMSA_id:80827 Arctic sea ice ARK10099 prokMSA_id:80855 clone ARKIA-135 prokMSA_id:80968 Arctic sea ice ARK10029 AF468356 prokMSA_id:81030 Arctic sea ice ARK10197 prokMSA_id:81031 Arctic sea ice ARK10081 prokMSA_id:81135 Octadecabacter sp. ANT9190 prokMSA_id:81431 Octadecabacter sp. ANT9237 prokMSA_id:81453 Octadecabacter sp. ANT9191 prokMSA_id:81601 Antarctic sea ice clone ANTXI/4_14-50 prokMSA_id:82065 Octadecabacter sp. ANT9232 prokMSA_id:82085 Octadecabacter sp. ANT9202 prokMSA_id:82271 Octadecabacter sp. ANT9212 prokMSA_id:82421 Octadecabacter sp. ANT9035 2.28.1.8.1.1.6 ENVIRONMENTAL_CLONE_SAR83 1 seq 2.28.1.8.1.1.6.7214 OTU 1 seq prokMSA_id:5726 Sargasso Sea clone SAR 83 2.28.1.8.1.1.8 ENVIRONMENTAL_CLONE_SAR122 1 seq 2.28.1.8.1.1.8.7217 OTU 1 seq prokMSA_id:5728 clone SAR 122 2.28.1.8.1.2 PARACOCCUS_SUBGROUP 162 seqs 2.28.1.8.1.2.1 PAR.DENITRIFICANS_SUBGROUP 35 seqs 2.28.1.8.1.2.1.6669 OTU 1 seq prokMSA_id:31561 Alpha S-N0-14A 2.28.1.8.1.2.1.6682 OTU 3 seqs prokMSA_id:5756 Paracoccus sp. str. MBIC3966 prokMSA_id:38672 Paracoccus zeaxanthinifaciens strain ATCC 21588 prokMSA_id:41749 Paracoccus zeaxanthinifaciens strain R-1506 2.28.1.8.1.2.1.7008 OTU 1 seq prokMSA_id:86027 Paracoccus aminovorans isolate dPAO9 2.28.1.8.1.2.1.7242 OTU 3 seqs prokMSA_id:62730 alpha clone ML602J-43 prokMSA_id:63841 alpha clone ML812M-6 prokMSA_id:63844 alpha clone ML602M-13 2.28.1.8.1.2.1.7262 OTU 16 seqs prokMSA_id:5731 Paracoccus versutus IAM 12814 prokMSA_id:5732 Paracoccus versutus IAM 12815 prokMSA_id:5735 Paracoccus denitrificans LMG 4218 prokMSA_id:5742 Paracoccus denitrificans JCM 6892 prokMSA_id:5743 Paracoccus denitrificans IAM 12479 prokMSA_id:5744 Paracoccus KS1 prokMSA_id:5745 Paracoccus KS2 prokMSA_id:5746 Paracoccus KL1 prokMSA_id:5754 Paracoccus sp. str. B8B1 prokMSA_id:5755 Paracoccus sp. str. B8B2 prokMSA_id:21865 Paracoccus versutus prokMSA_id:34219 Paracoccus thiophilus strain AS001 prokMSA_id:34943 Paracoccus denitrificans strain DSM 2944 prokMSA_id:47659 Paracoccus sp. 4FB8 prokMSA_id:75763 Paracoccus denitrificans isolate NKNIS prokMSA_id:77660 Paracoccus pantotrophus 2.28.1.8.1.2.1.7266 OTU 1 seq prokMSA_id:5736 clone EKHO-13 2.28.1.8.1.2.1.7268 OTU 1 seq prokMSA_id:5737 Methyloarcula terricola str. h37 VKM B-2160 2.28.1.8.1.2.1.7351 OTU 1 seq prokMSA_id:5753 str. ML-168a 2.28.1.8.1.2.1.7362 OTU 8 seqs prokMSA_id:22206 Paracoccus yeeii strain G1212 prokMSA_id:23110 Paracoccus yeeii strain G4878 prokMSA_id:26594 Paracoccus yeeii strain G9205 prokMSA_id:28217 Paracoccus yeeii strain G6446 prokMSA_id:33902 Paracoccus yeeii strain H13 prokMSA_id:44012 Paracoccus yeeii strain G6155 prokMSA_id:46743 Paracoccus yeeii strain G3060 prokMSA_id:52386 Paracoccus yeeii strain G1968 2.28.1.8.1.2.2 PAR.AMINOPHILUS_SUBGROUP 23 seqs 2.28.1.8.1.2.2.6733 OTU 1 seq prokMSA_id:5762 Methyloarcula marina str. h1 VKM B-2159 2.28.1.8.1.2.2.6949 OTU 1 seq prokMSA_id:32853 Paracoccus seriniphila strain MBT-A4 2.28.1.8.1.2.2.6965 OTU 2 seqs prokMSA_id:5758 Paracoccus aminophilus str. DM-15 JCM 7686 prokMSA_id:24498 Paracoccus aminophilus 2.28.1.8.1.2.2.7040 OTU 10 seqs prokMSA_id:5766 Paracoccus alcaliphilus str. TK 1015 JCM 7364 prokMSA_id:5769 Paracoccus MBIC4017 str. MBIC4017 prokMSA_id:5770 Paracoccus MBIC4018 str. MBIC4018 prokMSA_id:5771 Paracoccus marcusii str. ML-003 prokMSA_id:38102 Paracoccus alcaliphilus prokMSA_id:61950 Paracoccus-like sp. V4.BP.10 marine isolate prokMSA_id:74886 Methylarcula sp. HEL-8 isolate HEL-8 prokMSA_id:76690 alpha clone Gitt-KF-3 prokMSA_id:78216 Paracoccus sp. TUT1021 AB098589 prokMSA_id:80137 Arctic sea ice associated ARK10006 2.28.1.8.1.2.2.7125 OTU 4 seqs prokMSA_id:5767 Paracoccus marcusii prokMSA_id:5768 Paracoccus carotinifaciens str. E-396 prokMSA_id:5772 str. MBIC1143 prokMSA_id:61839 alpha clone CLi24 2.28.1.8.1.2.2.7274 OTU 1 seq prokMSA_id:5761 Paracoccus aminovorans str. DM-82 JCM 7685 2.28.1.8.1.2.2.7276 OTU 1 seq prokMSA_id:5765 Paracoccus sp. str. MBIC3345 Y4 2.28.1.8.1.2.2.7297 OTU 1 seq prokMSA_id:44392 Alpha ML6 strain ML6 2.28.1.8.1.2.2.7420 OTU 1 seq prokMSA_id:26524 Paracoccus alcaliphilus strain KTC002 2.28.1.8.1.2.2.7515 OTU 1 seq prokMSA_id:27188 Paracoccus kawasakiensis 2.28.1.8.1.2.3 PAR.ALKENIFER_SUBGROUP 5 seqs 2.28.1.8.1.2.3.6797 OTU 1 seq prokMSA_id:5779 Paracoccus kocurii str. B JCM 7684 2.28.1.8.1.2.3.7232 OTU 3 seqs prokMSA_id:5776 Paracoccus solventivorans str. L1 DSM 6637 prokMSA_id:5777 Paracoccus solventivorans str. A686/1 prokMSA_id:47316 Paracoccus solventivorans 2.28.1.8.1.2.3.7325 OTU 1 seq prokMSA_id:5778 Paracoccus alkenifer str. A901/1 DSM 11593 2.28.1.8.1.2.4 RB.VELDKAMPII_SUBGROUP 7 seqs 2.28.1.8.1.2.4.6815 OTU 1 seq prokMSA_id:5780 Rhodobacter veldkampii ATCC 35703 2.28.1.8.1.2.4.6816 OTU 1 seq prokMSA_id:5781 Rhodobacter QSSC1-20 str. QSSC1-20 2.28.1.8.1.2.4.7288 OTU 4 seqs prokMSA_id:38545 isolate HNS27# HpaNS1-3 prokMSA_id:47941 isolate HOS35# HpaBS prokMSA_id:73475 isolate HNSM50 prokMSA_id:96829 Rhodobacter veldkampii isolate ISR010 Y14150 2.28.1.8.1.2.4.7373 OTU 1 seq prokMSA_id:56159 Rhodobacter sp. AP-10 2.28.1.8.1.2.5 STR.SW2_SUBGROUP 8 seqs 2.28.1.8.1.2.5.6820 OTU 1 seq prokMSA_id:5783 str. SW2 2.28.1.8.1.2.5.6838 OTU 1 seq prokMSA_id:5784 str. from Lake Gossenkoellesee 2.28.1.8.1.2.5.6842 OTU 1 seq prokMSA_id:5785 str. from 400 mbsl of lake Baikal RUSSIA 2.28.1.8.1.2.5.7130 OTU 2 seqs prokMSA_id:59349 clone HP1B64 prokMSA_id:66953 Gram-negative MM 1 isolate MM 1 2.28.1.8.1.2.5.7330 OTU 1 seq prokMSA_id:38152 Gram negative B3P-2 2.28.1.8.1.2.5.7444 OTU 1 seq prokMSA_id:39288 Gram negative B1G-1A 2.28.1.8.1.2.5.7517 OTU 1 seq prokMSA_id:34269 Gram negative W6P-1 2.28.1.8.1.2.6 RB.SPHAEROIDES_SUBGROUP 13 seqs 2.28.1.8.1.2.6.312 OTU 1 seq prokMSA_id:5789 Agrobacterium ferrugineum IAM 12616 2.28.1.8.1.2.6.6728 OTU 1 seq prokMSA_id:46644 GR-WP33-45 clone GR-WP33-45 2.28.1.8.1.2.6.6771 OTU 1 seq prokMSA_id:79922 clone:OHKB4.20 2.28.1.8.1.2.6.6882 OTU 1 seq prokMSA_id:5793 Rhodobacter apigmentum 2.28.1.8.1.2.6.6880 OTU 1 seq prokMSA_id:5792 Rubrimonas cliftonensis str. OCh317 2.28.1.8.1.2.6.7021 OTU 1 seq prokMSA_id:21183 Rhodobacter sp. complete 2.28.1.8.1.2.6.7049 OTU 1 seq prokMSA_id:70088 Alpha 'ANG clone 1b' 2.28.1.8.1.2.6.723 OTU 2 seqs prokMSA_id:20873 Rhodobacter sp. U63934 prokMSA_id:74644 Rhodobacter sp 2.28.1.8.1.2.6.7513 OTU 1 seq prokMSA_id:80728 Arctic sea ice ARK10036 2.28.1.8.1.2.6.7536 OTU 1 seq prokMSA_id:48409 GR-Sh1-107 clone GR-Sh1-107 2.28.1.8.1.2.6.7618 OTU 1 seq prokMSA_id:49413 sludge A15b 2.28.1.8.1.2.6.7650 OTU 1 seq prokMSA_id:28407 SY6-29 2.28.1.8.1.2.7 AMR.MACAUENSIS_SUBGROUP 26 seqs 2.28.1.8.1.2.7.6658 OTU 1 seq prokMSA_id:35061 'halibut' 2.28.1.8.1.2.7.6730 OTU 1 seq prokMSA_id:35565 sludge A26 2.28.1.8.1.2.7.6819 OTU 1 seq prokMSA_id:33982 alpha MERTZ_0CM_210 2.28.1.8.1.2.7.6939 OTU 2 seqs prokMSA_id:18204 sludge A10 prokMSA_id:49391 mle1-20 2.28.1.8.1.2.7.7032 OTU 2 seqs prokMSA_id:77913 alpha isolate Osrt prokMSA_id:78270 Alpha A-col-R2A-4 isolate A-col-R2A-4 2.28.1.8.1.2.7.7047 OTU 3 seqs prokMSA_id:5804 Amaricoccus kaplicensis str. Ben101 ACM 5099 prokMSA_id:5805 Tetracoccus cechii str. Italian prokMSA_id:5806 Tetracoccus cechii str. Czech 2.28.1.8.1.2.7.7178 OTU 1 seq prokMSA_id:5801 clone HstpL51 2.28.1.8.1.2.7.7180 OTU 1 seq prokMSA_id:5803 Rhodobacter blasticus NCIMB 11576 2.28.1.8.1.2.7.7192 OTU 1 seq prokMSA_id:5808 Amaricoccus tamworthensis str. Ben103 ACM 5097 2.28.1.8.1.2.7.7191 OTU 1 seq prokMSA_id:5807 str. JTB359 2.28.1.8.1.2.7.7211 OTU 6 seqs prokMSA_id:5809 str. NKB7. AB013259 prokMSA_id:5810 clone Sva0758 prokMSA_id:16977 alpha MERTZ_2CM_12 prokMSA_id:42942 alpha clone:TYM--3 prokMSA_id:77142 alpha clone ALIB-14 prokMSA_id:83623 alpha clone ABBB-43 2.28.1.8.1.2.7.7237 OTU 1 seq prokMSA_id:58379 Rhodobacter group clone SBRT155 2.28.1.8.1.2.7.7246 OTU 1 seq prokMSA_id:54358 alpha MERTZ_0CM_310 2.28.1.8.1.2.7.7346 OTU 1 seq prokMSA_id:52539 alpha MERTZ_2CM_16 2.28.1.8.1.2.7.7508 OTU 1 seq prokMSA_id:86041 alpha clone FBP492 2.28.1.8.1.2.7.7609 OTU 1 seq prokMSA_id:5811 Amaricoccus macauensis str. Ben104 ACM 5096 2.28.1.8.1.2.7.7612 OTU 1 seq prokMSA_id:5812 Amaricoccus veronensis str. Ben102 ACM 5098 2.28.1.8.1.2.8 RB.CAPSULATUS_SUBGROUP 45 seqs 2.28.1.8.1.2.8.6681 OTU 1 seq prokMSA_id:17078 sludge A27 2.28.1.8.1.2.8.6870 OTU 1 seq prokMSA_id:71562 alpha clone DC5-50-1 2.28.1.8.1.2.8.6979 OTU 3 seqs prokMSA_id:22427 sludge A6 prokMSA_id:34114 sludge H42 prokMSA_id:40921 sludge S2 2.28.1.8.1.2.8.6991 OTU 35 seqs prokMSA_id:5788 Rhodobacter azotoformans str. KA25. D70846 prokMSA_id:5790 Rhodobacter azotoformans str. SA16. D70847 prokMSA_id:5791 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =. X53853 prokMSA_id:5795 Rhodobacter sphaeroides IFO 12203. D16425 prokMSA_id:5796 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =rrnC. X53 prokMSA_id:5797 Rhodobacter sphaeroides str. IL106 prokMSA_id:5798 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =rrnB. X53 prokMSA_id:5800 Rhodobacter blasticus ATCC 33485 prokMSA_id:5802 Rhodobacter TCRI 14 str. TCRI 14 prokMSA_id:5815 Rhodobacter capsulatus str. C5 prokMSA_id:5816 Rhodobacter TCRI 3 str. TCRI 3 prokMSA_id:5817 Rhodobacter TCRI 5 str. TCRI 5 prokMSA_id:5818 Rhodobacter TCRI str. TCRI 2 prokMSA_id:5820 Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166 prokMSA_id:5831 Rhodovulum sulfidophilum str. TW13. D16422 prokMSA_id:5832 Rhodovulum sulfidophilum str. W4 DSM 1374 . D16423 prokMSA_id:18225 Alpha S-N0-25B AB074724 prokMSA_id:22866 Rhodobacter sphaeroides KCTC 12085 prokMSA_id:56072 Rhodobacter sp. PS9 prokMSA_id:60360 Rhodovulum inexpectatum strain FRR-10T AF465833 prokMSA_id:60758 Rhodobacter sp. clone PSB-M-1 AY128090 prokMSA_id:61252 Paracoccus aminovorans isolate GP43 AJ505785 prokMSA_id:62339 Rhodovulum strictum prokMSA_id:64867 Paracoccus sp. L AJ412687 prokMSA_id:67718 Rhodobacter sp. NMR15 prokMSA_id:67721 Rhodobacter gluconicum prokMSA_id:76833 MF_clone_11 AY159129 prokMSA_id:76860 MF_clone_54 AY159141 prokMSA_id:78323 Rhodovulum sp. AR2102 prokMSA_id:83643 Rhodobacter sp. 2002-65602 prokMSA_id:88947 Paracoccus sp. Ol18 plasmid pOL18 rrn operon complete AY3120 prokMSA_id:89581 Paracoccus sp. Ophe1 isolate 1018 AY325770 prokMSA_id:91577 K91 AY345456 prokMSA_id:93958 alpha- clone Gitt-GS-149 AJ582185 prokMSA_id:98295 Rhodobacter sp. Jip03 AB122032 2.28.1.8.1.2.8.7149 OTU 2 seqs prokMSA_id:59350 clone HP1B71 prokMSA_id:59351 clone HP1A30 2.28.1.8.1.2.8.7308 OTU 1 seq prokMSA_id:59348 clone HP1B39 2.28.1.8.1.2.8.7358 OTU 1 seq prokMSA_id:62868 Cf. Rhodobacter sp. Framboise 2.28.1.8.1.2.8.7615 OTU 1 seq prokMSA_id:5814 Rhodobacter capsulatus str. B10 ATCC 33303 2.28.1.8.2 RHODOVULUM_GROUP 31 seqs 2.28.1.8.2.1 RHV.ADRIATICUM_SUBGROUP 13 seqs 2.28.1.8.2.1.6675 OTU 5 seqs prokMSA_id:5823 Rhodovulum sp. str. MB253 prokMSA_id:5825 Rhodovulum adriaticum DSM 2781 prokMSA_id:60395 Rhodobacter group LA38BS prokMSA_id:77962 Rhodovulum sp. AT2111 prokMSA_id:78290 Rhodovulum sp. AT2114 2.28.1.8.2.1.6923 OTU 6 seqs prokMSA_id:75643 Jannaschia sp. DFL-12 isolate DFL-12 prokMSA_id:76596 Jannaschia sp. DFL-36 isolate DFL-36 AJ534220 prokMSA_id:76848 Jannaschia sp. DFL-27 isolate DFL-27 prokMSA_id:76961 Jannaschia sp. DFL-30 isolate DFL-30 prokMSA_id:77178 Jannaschia sp. DFL-38 isolate DFL-38 prokMSA_id:77237 Jannaschia sp. DFL-16 isolate DFL-16 2.28.1.8.2.1.7648 OTU 1 seq prokMSA_id:35622 Marine ATAM407_62 2.28.1.8.2.1.7654 OTU 1 seq prokMSA_id:5822 Rhodovulum robiginosum str. N2 2.28.1.8.2.2 RHV.SULFIDOPHILUM_SUBGROUP 18 seqs 2.28.1.8.2.2.6659 OTU 1 seq prokMSA_id:5839 str. BD1-17 2.28.1.8.2.2.6709 OTU 1 seq prokMSA_id:33175 alpha Arctic96B-9 2.28.1.8.2.2.6937 OTU 2 seqs prokMSA_id:19381 clone 49523 AF097818 prokMSA_id:81430 alpha clone P55-GM4R-t 2.28.1.8.2.2.7025 OTU 1 seq prokMSA_id:79141 clone ZA2526c 2.28.1.8.2.2.7341 OTU 1 seq prokMSA_id:62332 Rhodovulum sp. CP-10 2.28.1.8.2.2.7345 OTU 6 seqs prokMSA_id:5834 Rhodovulum sulfidophilum str. TW13 prokMSA_id:5835 Rhodovulum sulfidophilum str. W-1S FERM P-15320 prokMSA_id:5836 Rhodovulum sulfidophilum str. W12 DSM 2351 prokMSA_id:5838 Rhodovulum sp. str. MB263 prokMSA_id:5840 Rhodovulum sp. str. MB260 prokMSA_id:60362 Rhodobacter group PH33 2.28.1.8.2.2.7471 OTU 1 seq prokMSA_id:60184 clone TK03 2.28.1.8.2.2.7524 OTU 1 seq prokMSA_id:5829 Rhodovulum euryhalinum str. KA-65 DSM 4868 2.28.1.8.2.2.7523 OTU 1 seq prokMSA_id:5828 Rhodovulum euryhalinum str. KA-65 DSM 4868 2.28.1.8.2.2.7542 OTU 1 seq prokMSA_id:5830 Rhodovulum strictum str. MB-G2 2.28.1.8.2.2.7657 OTU 1 seq prokMSA_id:5827 Rhodovulum EKHO-11 2.28.1.8.2.2.7656 OTU 1 seq prokMSA_id:5826 Rhodovulum iodosum str. N1 2.28.1.8.3 HYPHOMONAS_GROUP 53 seqs 2.28.1.8.3.1 CAU.HALOBACTEROIDES_SUBGROUP 27 seqs 2.28.1.8.3.1.6688 OTU 1 seq prokMSA_id:5846 Maricaulis BURTON-39 2.28.1.8.3.1.6894 OTU 1 seq prokMSA_id:5853 Maricaulis sp. strain MCS25 2.28.1.8.3.1.7015 OTU 1 seq prokMSA_id:38570 clone KS29 2.28.1.8.3.1.7034 OTU 1 seq prokMSA_id:68661 Caulobacter sp. WRs-1 isolate WRs-1 2.28.1.8.3.1.7068 OTU 3 seqs prokMSA_id:18991 Marine SCRIPPS_423 AF359547 prokMSA_id:24031 Maricaulis sp. clone MERTZ_0CM_265 AF425757 prokMSA_id:61139 Alpha MGP-1 2.28.1.8.3.1.7241 OTU 12 seqs prokMSA_id:5841 Caulobacter maris ATCC 15268 prokMSA_id:5842 Caulobacter sp. str. MCS10. M83807 prokMSA_id:5845 Caulobacter halobacteroides ATCC 15269 prokMSA_id:5848 NCIMB 2022. AB008849 prokMSA_id:5849 NCIMB 2209. AB008850 prokMSA_id:5851 Maricaulis MCS11 str. MCS11. AJ227805 prokMSA_id:5855 Maricaulis MCS28 str. MCS28. AJ227810 prokMSA_id:27292 Maricaulis sp. MCS31 strain MCS31 prokMSA_id:32951 Maricaulis sp. MCS30 strain MCS30 prokMSA_id:33484 Maricaulis maris strain ATCC 15269 AJ227803 prokMSA_id:49200 Maricaulis maris strain ATCC 15268 AJ227802 prokMSA_id:49396 Maricaulis sp. MCS10 strain MCS10 AJ301664 2.28.1.8.3.1.7386 OTU 1 seq prokMSA_id:25389 Alpha MC-4 2.28.1.8.3.1.7397 OTU 2 seqs prokMSA_id:5850 Maricaulis MCS06 str. MCS06 prokMSA_id:5852 Maricaulis MCS18 str. MCS18 2.28.1.8.3.1.7584 OTU 4 seqs prokMSA_id:5854 Maricaulis sp. strain MCS26 prokMSA_id:26948 Maricaulis virginensis strain VC5 prokMSA_id:60393 Hyphomonas group LA49 prokMSA_id:72693 Caulobacter sp. JP68 AY007678 2.28.1.8.3.1.7637 OTU 1 seq prokMSA_id:52259 Maricaulis sp. kbc07 2.28.1.8.3.2 HYM.JANNASCHIANA_SUBGROUP 26 seqs 2.28.1.8.3.2.6632 OTU 1 seq prokMSA_id:43442 Hirschia baltica strain DSM 5838T 2.28.1.8.3.2.6647 OTU 1 seq prokMSA_id:40367 alpha clone SM2C07 2.28.1.8.3.2.6742 OTU 1 seq prokMSA_id:5863 Caulobacter MCS23 str. MCS23 2.28.1.8.3.2.6743 OTU 1 seq prokMSA_id:5864 Hyphomonas polymorpha DSM 2665 2.28.1.8.3.2.7073 OTU 3 seqs prokMSA_id:5861 clone HstpL7 prokMSA_id:5873 clone HstpL3 prokMSA_id:5874 clone HstpL6 2.28.1.8.3.2.7084 OTU 12 seqs prokMSA_id:5859 Hyphomonas oceanitis str. SCH89 IFAM 1325 . AF082797 prokMSA_id:5870 Hyphomonas rosenbergii str. VP-6 prokMSA_id:5871 Hyphomonas polymorpha str. Pr-727 prokMSA_id:5876 Hyphomonas hirschiana str. VP-5 DSM 5152 prokMSA_id:5877 Hyphomonas neptunium str. LE670 IFAM LE670 prokMSA_id:45671 Marine SCRIPPS_739 prokMSA_id:83503 Marine arctic deep-sea HG12 prokMSA_id:84176 Marine arctic deep-sea HB10 AJ557862 prokMSA_id:85403 Marine arctic deep-sea FE9 AJ557859 prokMSA_id:85490 Marine arctic deep-sea FH7 AJ557857 prokMSA_id:86059 Marine arctic deep-sea HH9 prokMSA_id:86459 Marine arctic deep-sea HA12 2.28.1.8.3.2.7485 OTU 6 seqs prokMSA_id:5858 Hyphomonas jannaschiana str. VP-1 ATCC 33882. M83806 prokMSA_id:5860 Hyphomonas jannaschiana str. VP-2 DSM 5153 prokMSA_id:5865 Hyphomonas jannaschiana str. VP-2 ATCC 33883 prokMSA_id:5866 Hyphomonas adhaerens str. MHS-3 prokMSA_id:5872 Hyphomonas jannaschiana str. VP-1 prokMSA_id:81308 clone KM82 2.28.1.8.3.2.7649 OTU 1 seq prokMSA_id:5867 Hyphomonas johnsonii str. MHS-2 2.28.1.8.4 ENVIRONMENTAL_CLONE_SAR102 1 seq 2.28.1.8.4.6837 OTU 1 seq prokMSA_id:5882 Sargasso Sea clone SAR 102 2.28.1.8.5 RICKETTSIA_AND_OTHERS 346 seqs 2.28.1.8.5.3 ENVIRONMENTAL_CLONE_PLY43_SUBGROUP 88 seqs 2.28.1.8.5.3.6678 OTU 1 seq prokMSA_id:30286 alpha 33-FL82B98 2.28.1.8.5.3.6735 OTU 19 seqs prokMSA_id:5889 clone PLY43 prokMSA_id:5898 clone SAR193 prokMSA_id:23331 alpha clone Arctic95A-16 prokMSA_id:33310 alpha clone Arctic96B-10 prokMSA_id:33797 alpha clone Arctic96A-20 prokMSA_id:40239 coastal Alaskan Arctic AWS98-19a prokMSA_id:40986 alpha clone Arctic96B-3 prokMSA_id:43576 alpha clone Arctic97C-1 prokMSA_id:53945 marine alpha clone M7-400-2 ; -23S intergenic spacer region prokMSA_id:61204 Pelagibacter ubique strain HTCC1002 ; -23S intergenic spacer prokMSA_id:61205 Pelagibacter ubique strain HTCC1062 ; -23S intergenic spacer prokMSA_id:64906 alpha pT-215R AY095873 prokMSA_id:68977 alpha MB13H04 ; tRNA-Ile and tRNA-Ala genes complete ; and 2 prokMSA_id:68985 alpha MB11E07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2 prokMSA_id:79196 clone ZA3911c prokMSA_id:79390 clone ZA3320c prokMSA_id:82782 Bacteroidetes clone 3G9 prokMSA_id:84240 Bacteroidetes clone C35 prokMSA_id:86470 Bacteroidetes clone 1A3 2.28.1.8.5.3.6754 OTU 1 seq prokMSA_id:54657 marine alpha clone M3-450-1 ; -23S intergenic spacer region 2.28.1.8.5.3.6763 OTU 1 seq prokMSA_id:34081 alpha kpj28f 2.28.1.8.5.3.6788 OTU 4 seqs prokMSA_id:19573 alpha clone Arctic96B-22 AF353229 prokMSA_id:35677 alpha clone GOBB3-CL243 prokMSA_id:50807 alpha clone Arctic96A-7 AF353226 prokMSA_id:88223 Alpha SKA48 AY317115 2.28.1.8.5.3.6811 OTU 2 seqs prokMSA_id:34714 marine p712-15 U81532 prokMSA_id:68975 alpha MB21A02 ; tRNA-Ile and tRNA-Ala genes complete ; and 2 2.28.1.8.5.3.6825 OTU 1 seq prokMSA_id:53064 marine alpha clone M3-450-5 ; -23S intergenic spacer region 2.28.1.8.5.3.6884 OTU 1 seq prokMSA_id:53491 marine alpha clone M3-450-4 ; -23S intergenic spacer region 2.28.1.8.5.3.6911 OTU 1 seq prokMSA_id:38559 alpha 33-PA124B98 2.28.1.8.5.3.6933 OTU 4 seqs prokMSA_id:31774 freshwater LD12 Z99997 prokMSA_id:52131 clone HTH6 AF418965 prokMSA_id:55574 alpha clone DC8-48-1 AY145598 prokMSA_id:85388 alpha clone TLM01/TLMdgge14 2.28.1.8.5.3.7043 OTU 29 seqs prokMSA_id:5901 clone SAR203 prokMSA_id:22763 alpha clone Arctic95D-8 prokMSA_id:28898 alpha Arctic96BD-18 AF355034 prokMSA_id:37410 alpha ARCT1-56 AF440726 prokMSA_id:38403 alpha clone Arctic97B-5 prokMSA_id:49361 alpha MB13E08 AY033327 prokMSA_id:52749 alpha clone Arctic95C-7 prokMSA_id:52927 marine alpha clone M3-150-3 ; -23S intergenic spacer region prokMSA_id:52960 marine alpha clone A2-021-5 ; -23S intergenic spacer region prokMSA_id:53045 marine alpha clone M3-050-10 ; -23S intergenic spacer region prokMSA_id:53061 marine alpha clone A2-021-4 ; -23S intergenic spacer region prokMSA_id:53077 marine alpha clone A2-021-1 ; -23S intergenic spacer region prokMSA_id:53187 marine alpha clone M3-050-7 ; -23S intergenic spacer region prokMSA_id:53603 marine alpha clone M3-150-5 ; -23S intergenic spacer region prokMSA_id:53959 marine alpha clone M7-400-1 ; -23S intergenic spacer region prokMSA_id:54108 marine alpha clone A1-010-1 ; -23S intergenic spacer region prokMSA_id:54269 marine alpha clone M3-450-2 ; -23S intergenic spacer region prokMSA_id:54805 marine alpha clone M3-450-3 ; -23S intergenic spacer region prokMSA_id:64899 alpha pT-410 AY095881 prokMSA_id:64998 alpha SH-200R AY095907 prokMSA_id:65024 alpha ARCT2-10 AY095824 prokMSA_id:65123 alpha OR-118 AY095687 prokMSA_id:65137 alpha OS2K-21 AY095669 prokMSA_id:65193 alpha WR-33 AY095565 prokMSA_id:65196 alpha WR-30 AY095562 prokMSA_id:65201 alpha WR-23 AY095557 prokMSA_id:77856 clone s77 AY171341 prokMSA_id:80272 alpha clone WCPAP18 AY220722 prokMSA_id:92826 alpha clone PLY-P1-114 AY354830 2.28.1.8.5.3.7104 OTU 1 seq prokMSA_id:54994 marine alpha clone M7-400-3 ; -23S intergenic spacer region 2.28.1.8.5.3.7122 OTU 1 seq prokMSA_id:5897 clone OM155 2.28.1.8.5.3.7142 OTU 1 seq prokMSA_id:18749 clone CTD40B 2.28.1.8.5.3.7203 OTU 1 seq prokMSA_id:24388 alpha clone Arctic96AD-8 2.28.1.8.5.3.7206 OTU 1 seq prokMSA_id:5903 clone SAR220 2.28.1.8.5.3.7210 OTU 1 seq prokMSA_id:5902 clone SAR211 2.28.1.8.5.3.7258 OTU 1 seq prokMSA_id:54614 marine alpha clone B-015-5 ; -23S intergenic spacer region c 2.28.1.8.5.3.7365 OTU 1 seq prokMSA_id:39117 alpha CTD6B 2.28.1.8.5.3.7376 OTU 8 seqs prokMSA_id:25036 alpha SUR-FREE-2 AF114651 prokMSA_id:30604 ECS18 AB041288 prokMSA_id:36382 marine ZD0410 prokMSA_id:48485 alpha clone Arctic95B-1 prokMSA_id:63102 clone MB-C2-128 prokMSA_id:68988 alpha MB11D08 ; tRNA-Ile and tRNA-Ala genes complete ; and 2 prokMSA_id:68990 alpha MB11B07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2 prokMSA_id:70277 alpha SUR-FREE-3 AF114645 2.28.1.8.5.3.7421 OTU 1 seq prokMSA_id:54561 marine alpha clone M3-150-4 ; -23S intergenic spacer region 2.28.1.8.5.3.7504 OTU 1 seq prokMSA_id:60628 alpha clone AEGEAN_233 2.28.1.8.5.3.7541 OTU 1 seq prokMSA_id:49399 alpha 33-PA19B98 2.28.1.8.5.3.7554 OTU 1 seq prokMSA_id:54935 marine alpha clone M2-025-1 ; -23S intergenic spacer region 2.28.1.8.5.3.7579 OTU 1 seq prokMSA_id:31458 alpha clone Arctic96B-6 2.28.1.8.5.3.7592 OTU 1 seq prokMSA_id:68982 alpha MB12A07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2 2.28.1.8.5.3.7608 OTU 1 seq prokMSA_id:5904 clone SAR241 2.28.1.8.5.3.7633 OTU 1 seq prokMSA_id:39904 alpha CTD26B 2.28.1.8.5.4 HOLOSPORA_SUBGROUP 11 seqs 2.28.1.8.5.4.6643 OTU 1 seq prokMSA_id:5920 clone BURTON-1 2.28.1.8.5.4.6646 OTU 1 seq prokMSA_id:5921 unnamed organism 2.28.1.8.5.4.6677 OTU 2 seqs prokMSA_id:40401 Endosymbiont of Acanthamoeba sp. UWET39 prokMSA_id:64551 Endosymbiont of Acanthamoeba sp. TUMK-23 2.28.1.8.5.4.6793 OTU 1 seq prokMSA_id:44738 Green Bay ferromanganous micronodule MND8 2.28.1.8.5.4.7010 OTU 1 seq prokMSA_id:74136 alpha clone 10B6 2.28.1.8.5.4.7094 OTU 1 seq prokMSA_id:78256 alpha clone:Rs-M08 2.28.1.8.5.4.7240 OTU 1 seq prokMSA_id:48275 clone t005 2.28.1.8.5.4.7465 OTU 1 seq prokMSA_id:79042 isolate 4x29 2.28.1.8.5.4.7474 OTU 1 seq prokMSA_id:5919 clone WCHA1-65 2.28.1.8.5.4.7651 OTU 1 seq prokMSA_id:5918 Caedibacter caryophila str. 221 2.28.1.8.5.5 RICKETTSIA_SUBGROUP 74 seqs 2.28.1.8.5.5.6639 OTU 2 seqs prokMSA_id:81215 clone Hw191 AF497582 prokMSA_id:82176 clone Hw124 2.28.1.8.5.5.6712 OTU 1 seq prokMSA_id:66159 Rickettsiales 'Montezuma' 2.28.1.8.5.5.6724 OTU 1 seq prokMSA_id:5942 str. BD1-10 2.28.1.8.5.5.6809 OTU 27 seqs prokMSA_id:5925 Rickettsia conorii str. IIT-586 prokMSA_id:5926 Rickettsia africae str. ESF-5; Z9-Hu prokMSA_id:5927 Rickettsia sp. str. S prokMSA_id:5928 Rickettsia sp. str. Bar 29 prokMSA_id:5934 Rickettsia slovaca str. 13-B prokMSA_id:5936 Rickettsia sp. str. A-167 prokMSA_id:5937 Rickettsia conorii str. Indian Tick Typhus rickettsia prokMSA_id:5945 Rickettsia sp. str. ISTT CDC1 prokMSA_id:5946 Rickettsia massiliae str. Mtu1 prokMSA_id:5948 Rickettsia japonica str. YM prokMSA_id:5954 Rickettsia rickettsii str. Sawtooth prokMSA_id:5956 Rickettsia sibirica str. 246 prokMSA_id:5957 Rickettsia sp. str. TT-118 prokMSA_id:5958 Rickettsia honei str. RB prokMSA_id:5963 Rickettsia honei str. JC prokMSA_id:5965 Rickettsia massiliae str. GS prokMSA_id:5967 Rickettsia rickettsii str. R Bitterroot prokMSA_id:5970 Rickettsia rhipicephali str. 3-7-6 prokMSA_id:5971 Rickettsia conorii str. Moroccan prokMSA_id:5975 Rickettsia sibirica ATCC VR151 prokMSA_id:5976 Rickettsia parkeri str. Maculatum 20 prokMSA_id:26925 Rickettsia sp. DnS28 strain DnS28 prokMSA_id:27672 Rickettsia sp. DnS14 strain DnS14 prokMSA_id:37110 Rickettsia heilongjiangii prokMSA_id:45313 Rickettsia sp. RpA4 strain RpA4 prokMSA_id:65330 Rickettsia sp. DT1 prokMSA_id:75477 Rickettsia sp. JL-02 2.28.1.8.5.5.6831 OTU 1 seq prokMSA_id:63333 clone RCP2-17 2.28.1.8.5.5.6886 OTU 2 seqs prokMSA_id:5951 unnamed organism prokMSA_id:5966 unnamed organism 2.28.1.8.5.5.6947 OTU 1 seq prokMSA_id:77922 alpha clone:Rs-B60 2.28.1.8.5.5.6983 OTU 1 seq prokMSA_id:26167 alpha kpa92 2.28.1.8.5.5.6988 OTU 1 seq prokMSA_id:5952 Rickettsia sp 2.28.1.8.5.5.7114 OTU 1 seq prokMSA_id:5924 Rickettsia prowazekii str. Breinl ATCC VR-142 alpha purple 2.28.1.8.5.5.7156 OTU 1 seq prokMSA_id:78393 alpha clone:Rs-M62 2.28.1.8.5.5.7234 OTU 1 seq prokMSA_id:5960 Rickettsia typhi str. Wilmington 2.28.1.8.5.5.7321 OTU 2 seqs prokMSA_id:39764 Rickettsia endosymbiont of Hemicrepsis marginata prokMSA_id:52394 Rickettsia endosymbiont of Torix tagoi 2.28.1.8.5.5.7556 OTU 30 seqs prokMSA_id:5922 Rickettsia sp prokMSA_id:5923 Rickettsia australis str. Phillips prokMSA_id:5929 Rickettsia sp prokMSA_id:5930 Rickettsia aeschlimanni str. Mc16 prokMSA_id:5932 Rickettsia typhi str. Wilmington prokMSA_id:5935 Rickettsia montana str. Ohio 83-441 prokMSA_id:5938 Rickettsia helvetica str. C9P9 prokMSA_id:5939 Rickettsia typhi str. Wilmington prokMSA_id:5940 Rickettsia amblyommii str. MO 85-1084 prokMSA_id:5941 Rickettsia canadensis str. 2678 prokMSA_id:5943 Rickettsia akari str. MK Kaplan prokMSA_id:5944 Rickettsia rhipicephali prokMSA_id:5947 Rickettsia australis str. RHS prokMSA_id:5949 Rickettsia sp. str. PAR prokMSA_id:5950 Rickettsia bellii str. strains 369-C and G2D42 prokMSA_id:5953 Rickettsia parkeri str. Maculatum 20 prokMSA_id:5959 Rickettsia australis str. Phillips prokMSA_id:5961 Rickettsia bellii str. 369L42-1 prokMSA_id:5962 Rickettsia sp. str. Puerto Rico prokMSA_id:5964 Rickettsia sp. str. ELB agent prokMSA_id:5968 Rickettsia canadensis str. McKeil prokMSA_id:5973 Rickettsia montana ATCC VR-611 prokMSA_id:19942 Rickettsia sp. IRS4 prokMSA_id:28211 Rickettsia sp. BJ-90 prokMSA_id:49155 Rickettsia sp. IRS3 prokMSA_id:55503 Rickettsia sp. IP1 AF394904 prokMSA_id:65324 Rickettsia sp. IO1 prokMSA_id:65325 Rickettsia sp. IM1 AF394905 prokMSA_id:65333 Rickettsia sp. AT1 prokMSA_id:84326 Candidatus Rickettsia tarasevichiae 2.28.1.8.5.5.7552 OTU 1 seq prokMSA_id:35350 alpha clone SM1B06 2.28.1.8.5.5.7622 OTU 1 seq prokMSA_id:43432 Haplosporidium sp. endosymbiont isolate AbFoot 2.28.1.8.5.6 ORIENTIA_SUBGROUP 17 seqs 2.28.1.8.5.6.7367 OTU 17 seqs prokMSA_id:5977 Orientia tsutsugamushi str. Kawasaki prokMSA_id:5978 Orientia tsutsugamushi str. Shimokoshi prokMSA_id:5979 Orientia tsutsugamushi str. Kato prokMSA_id:5980 Orientia tsutsugamushi str. Kato prokMSA_id:5981 Orientia tsutsugamushi str. Karp prokMSA_id:5982 Orientia tsutsugamushi str. Litchfield prokMSA_id:5983 Orientia tsutsugamushi str. Karp prokMSA_id:5984 Orientia tsutsugamushi str. Kuroki prokMSA_id:5985 Orientia tsutsugamushi str. Gilliam prokMSA_id:5986 Orientia tsutsugamushi str. Gilliam prokMSA_id:5987 Orientia tsutsugamushi str. Gilliam prokMSA_id:71790 Rickettsia tsutsugamushi strain Kato D38624 prokMSA_id:72018 Rickettsia tsutsugamushi strain Shimokoshi D38627 prokMSA_id:72291 Rickettsia tsutsugamushi strain Kawasaki D38625 prokMSA_id:72689 Rickettsia tsutsugamushi strain Gilliam D38622 prokMSA_id:72798 Rickettsia tsutsugamushi strain Karp D38623 prokMSA_id:73599 Rickettsia tsutsugamushi strain Kuroki D38626 2.28.1.8.5.8 EHR.RISTICII_SUBGROUP 19 seqs 2.28.1.8.5.8.7305 OTU 16 seqs prokMSA_id:5996 Ehrlichia risticii str. Illinois ATCC VR-986 alpha purple prokMSA_id:5998 Ehrlichia risticii prokMSA_id:6001 Ehrlichia risticii str. Kentucky isolate prokMSA_id:6003 Ehrlichia risticii prokMSA_id:6004 Ehrlichia risticii prokMSA_id:6005 Ehrlichia risticii str. SHSN-1 prokMSA_id:6006 Ehrlichia risticii str. SHSN-2 prokMSA_id:6007 Ehrlichia sp prokMSA_id:6008 Ehrlichia risticii str. Ohio isolate 081 prokMSA_id:6011 Ehrlichia sennetsu str. 11908 prokMSA_id:6012 Ehrlichia sennetsu str. Miyayama prokMSA_id:24883 Ehrlichia risticii isolate S22 AY005439 prokMSA_id:31250 Ehrlichia risticii isolate S6 prokMSA_id:33480 Ehrlichia risticii from Caddisfly larvae prokMSA_id:67336 Ehrlichia risticii from horse 1 AF380257 prokMSA_id:67337 Ehrlichia risticii from horse 2 AF380258 2.28.1.8.5.8.7304 OTU 1 seq prokMSA_id:17901 Ehrlichia sp. 'trout isolate' 2.28.1.8.5.8.7434 OTU 2 seqs prokMSA_id:6002 str. WSA prokMSA_id:6010 Agent of withering syndrome in abalone AF133090 2.28.1.8.5.9 EHRLICHIA_SUBGROUP 79 seqs 2.28.1.8.5.9.1 EHR.CANIS_SUBGROUP 42 seqs 2.28.1.8.5.9.1.6865 OTU 4 seqs prokMSA_id:6025 unnamed organism prokMSA_id:59553 Ehrlichia sp. 'Rattus strain' prokMSA_id:63883 Ehrlichia-like sp. TK4456 prokMSA_id:63884 Ehrlichia sp. IS58 2.28.1.8.5.9.1.7031 OTU 38 seqs prokMSA_id:6014 Ehrlichia chaffeensis str. 91HE17. U23503 prokMSA_id:6015 Ehrlichia chaffeensis str. Sapulpa. U60476 prokMSA_id:6016 Ehrlichia chaffeensis str. Jax. U86664 prokMSA_id:6017 Ehrlichia chaffeensis str. St. Vincent. U86665 prokMSA_id:6018 Ehrlichia chaffeensis complete prokMSA_id:6019 Ehrlichia canis str. Oklahoma prokMSA_id:6022 Ehrlichia canis str. Gzh982 prokMSA_id:6023 Ehrlichia sp. str. Germishuys prokMSA_id:6024 Cowdria ruminantium str. Crystal Springs Zimbabwe isolate prokMSA_id:6026 Ehrlichia ewingii str. Stillwater prokMSA_id:6027 Ehrlichia ewingii str. 95E9-TS prokMSA_id:6028 Ehrlichia muris str. AS145 ATCC VR-1411 prokMSA_id:6030 Ehrlichia muris str. I268 prokMSA_id:6031 Ehrlichia muris str. NA1 prokMSA_id:6032 Ehrlichia chaffeensis str. Arkansas prokMSA_id:6033 Ehrlichia canis str. Florida prokMSA_id:6034 Cowdria ruminantium str. Mara 87/7 prokMSA_id:6035 Cowdria ruminantium str. Omatjenne prokMSA_id:6036 Cowdria ruminantium str. Ball3 prokMSA_id:6037 Cowdria ruminantium str. d from Senegal stock prokMSA_id:6038 Ehrlichia canis str. 611 prokMSA_id:16712 Cowdria ruminantium Porto Henrique prokMSA_id:19195 Ehrlichia chaffeensis strain Arkansas ; and succinate dehydr prokMSA_id:24968 Ehrlichia sp. ERm58 AF311967 prokMSA_id:30672 Ehrlichia sp. HI-2000 prokMSA_id:32463 Ehrlichia canis isolate VHE AF373612 prokMSA_id:36711 Ehrlichia sp. HF565 prokMSA_id:38150 Ehrlichia ovina prokMSA_id:38268 Ehrlichia canis isolate VDE AF373613 prokMSA_id:40434 Ehrlichia sp. Anan prokMSA_id:41424 Ehrlichia sp. Tibet prokMSA_id:48642 Cowdria sp. 'South African canine' prokMSA_id:50091 Cowdria ruminantium Bela Vista AF318022 prokMSA_id:70749 Ehrlichia sp. EHt224 prokMSA_id:72979 Cowdria ruminantium prokMSA_id:74141 Cowdria ruminantium prokMSA_id:82252 Ehrlichia sp. EBm52 AF497581 prokMSA_id:94201 Ehrlichia canis strain Kagoshima 1 AF536827 2.28.1.8.5.9.2 EHR.PHAGOCYTOPHILA_SUBGROUP 37 seqs 2.28.1.8.5.9.2.6699 OTU 1 seq prokMSA_id:6047 unnamed organism 2.28.1.8.5.9.2.6890 OTU 2 seqs prokMSA_id:6040 Ehrlichia bovis prokMSA_id:74038 Ehrlichia bovis 2.28.1.8.5.9.2.6975 OTU 9 seqs prokMSA_id:6054 Ehrlichia sp. str. rosa prokMSA_id:6058 Ehrlichia sp. str. Swiss horse 1 prokMSA_id:6059 Ehrlichia sp prokMSA_id:6069 Ehrlichia equi str. CASOLJ prokMSA_id:6071 Ehrlichia equi str. CASITL prokMSA_id:6073 Ehrlichia sp prokMSA_id:6074 Ehrlichia equi prokMSA_id:25787 Ehrlichia sp. RND-1 prokMSA_id:49397 Ehrlichia sp. 'LGE agent' 2.28.1.8.5.9.2.7083 OTU 18 seqs prokMSA_id:6039 Anaplasma marginale prokMSA_id:18751 Anaplasma ovis strain Idaho prokMSA_id:23009 Anaplasma marginale strain Florida AF309867 prokMSA_id:25427 Anaplasma centrale prokMSA_id:28040 Anaplasma marginale strain Virginia AF309866 prokMSA_id:28557 Anaplasma centrale prokMSA_id:29417 Anaplasma centrale strain Israel vaccine prokMSA_id:30827 Anaplasma marginale prokMSA_id:44706 Anaplasma marginale strain South Idaho prokMSA_id:50430 Anaplasma ovis prokMSA_id:56843 Aegyptianella pullorum prokMSA_id:58998 Anaplasma marginale prokMSA_id:79130 Anaplasma marginale isolate tailed from Israel prokMSA_id:79178 Anaplasma marginale strain F12 from Australia prokMSA_id:79180 Anaplasma marginale from South Africa from black wildebeest prokMSA_id:79361 Anaplasma marginale isolate Eland from South Africa prokMSA_id:79444 Anaplasma centrale strain vaccine from Australia prokMSA_id:79581 Anaplasma marginale strain Veld from South Africa 2.28.1.8.5.9.2.7091 OTU 6 seqs prokMSA_id:6041 Ehrlichia platys prokMSA_id:6042 Ehrlichia platys str. Gzh981 prokMSA_id:6048 Ehrlichia sp. str. Omatjenne prokMSA_id:18302 Ehrlichia platys prokMSA_id:33737 Ehrlichia sp. Bom Pastor prokMSA_id:42949 Ehrlichia platys 2.28.1.8.5.9.2.7446 OTU 1 seq prokMSA_id:6052 str. BD2-8 2.28.1.8.5.10 WOLBACHIA_SUBGROUP 58 seqs 2.28.1.8.5.10.6628 OTU 13 seqs prokMSA_id:6080 Wolbachia sp prokMSA_id:6088 Wolbachia pipientis prokMSA_id:6090 symbiont of incompatibility symbiont of Nasonia vitripennis prokMSA_id:6094 Wolbachia sp prokMSA_id:6095 Wolbachia sp prokMSA_id:6096 Wolbachia sp prokMSA_id:6097 Wolbachia sp prokMSA_id:6098 Wolbachia sp prokMSA_id:6099 Wolbachia sp prokMSA_id:6100 Wolbachia sp prokMSA_id:6101 Wolbachia sp prokMSA_id:6128 Wolbachia pipientis prokMSA_id:6129 Wolbachia sp 2.28.1.8.5.10.6648 OTU 13 seqs prokMSA_id:6093 Wolbachia sp prokMSA_id:6104 symbiont of Trichogramma deion prokMSA_id:6105 symbiont of Trichogramma deion prokMSA_id:6107 unnamed organism prokMSA_id:6108 Wolbachia sp prokMSA_id:6112 endosymbiont of Bangasternus orientalis. M85266 prokMSA_id:6113 symbiont of incompatibility symbiont of Nasonia vitripennis prokMSA_id:6118 symbiont of incompatibility symbiont of Nasonia longicornis prokMSA_id:6120 symbiont of incompatibility symbiont of Nasonia giraulti prokMSA_id:6124 Wolbachia sp prokMSA_id:6125 unnamed organism prokMSA_id:6142 symbiont of Trichogramma deion prokMSA_id:83890 Wolbachia endosymbiont of Dirofilaria immitis strain DAX 2.28.1.8.5.10.6803 OTU 8 seqs prokMSA_id:6109 Wolbachia sp prokMSA_id:18468 Wolbachia sp. Ablan16SWol prokMSA_id:28156 Wolbachia sp. Avit16SWol prokMSA_id:30977 Wolbachia sp. WCR16SWol prokMSA_id:34685 Wolbachia sp prokMSA_id:41221 Wolbachia sp. Dlem16SWol prokMSA_id:52243 Wolbachia sp. Dcris16SWol prokMSA_id:52332 Wolbachia endosymbiont of Nephila clavata 2.28.1.8.5.10.6830 OTU 1 seq prokMSA_id:63330 clone RCP1-24 2.28.1.8.5.10.6910 OTU 7 seqs prokMSA_id:6131 symbiont of Dirofilaria immitis. Z49261 prokMSA_id:6132 unnamed organism prokMSA_id:6134 Wolbachia sp prokMSA_id:19317 Wolbachia endosymbiont of Onchocerca gutturosa prokMSA_id:23966 Wolbachia endosymbiont of Onchocerca gibsoni prokMSA_id:43030 Wolbachia sp. Okinawa-RS32 AF304445 prokMSA_id:73265 Wolbachia endosymbiont of Dirofilaria immitis 2.28.1.8.5.10.6907 OTU 1 seq prokMSA_id:6117 symbiont of Trichogramma deion 2.28.1.8.5.10.6908 OTU 5 seqs prokMSA_id:6121 endosymbiont of Rhinocyllus conicus prokMSA_id:40260 Wolbachia endosymbiont of Kalotermes flavicollis specific ho prokMSA_id:50758 Wolbachia endosymbiont of Mansonella ozzardi prokMSA_id:51738 Wolbachia endosymbiont of Microcerotermes sp prokMSA_id:87561 Wolbachia endosymbiont of Mansonella perstans isolate M02-05 2.28.1.8.5.10.7378 OTU 1 seq prokMSA_id:23566 Wolbachia endosymbiont of Dirofilaria repens 2.28.1.8.5.10.7481 OTU 9 seqs prokMSA_id:6082 symbiont of Muscifidurax uniraptor prokMSA_id:6106 symbiont of incompatibility symbiont of Nasonia vitripennis prokMSA_id:6127 symbiont of incompatibility symbiont of Nasonia giraulti prokMSA_id:6130 Wolbachia sp prokMSA_id:6140 symbiont of incompatibility symbiont of Nasonia longicornis prokMSA_id:28825 Wolbachia pipientis prokMSA_id:72880 Wolbachia endosymbiont of Mesaphorura macrochaeta prokMSA_id:77810 Wolbachia endosymbiont of Paratullbergia callipygos prokMSA_id:89135 Wolbachia endosymbiont 4 of Acromyrmex octospinosus AF491888 2.28.1.10 SPHINGOMONAS_GROUP 403 seqs 2.28.1.10.1 SPG.YANOIKUYAE_SUBGROUP 72 seqs 2.28.1.10.1.6897 OTU 1 seq prokMSA_id:6162 Sphingomonas sp. str. DhA-33 2.28.1.10.1.7053 OTU 1 seq prokMSA_id:6184 clone Sar248 2.28.1.10.1.7055 OTU 1 seq prokMSA_id:33785 Alpha S-A1-4C 2.28.1.10.1.7344 OTU 1 seq prokMSA_id:43717 Rhizosphere soil isolate RSI-21 2.28.1.10.1.7440 OTU 46 seqs prokMSA_id:6154 Sphingomonas sp. str. SS86. D16148 prokMSA_id:6155 Sphingomonas paucimobilis str. UT26 prokMSA_id:6157 Sphingomonas flava str. RA2 DSM 8671 prokMSA_id:6163 Sphingomonas paucimobilis str. EPA 505 prokMSA_id:6165 Sphingomonas BRW2 str. BRW2 prokMSA_id:6167 str. CD. AF191022 prokMSA_id:6168 Sphingomonas chlorophenolica ATCC 33790 prokMSA_id:6176 Sphingomonas chlorophenolica str. SR3. X87162 prokMSA_id:6178 Sphingomonas paucimobilis prokMSA_id:6179 Sphingomonas flava ATCC 29723 prokMSA_id:6181 Sphingomonas sp. str. CF06 prokMSA_id:6182 Sphingomonas herbicidovorans str. MBIC3166. AB022428 prokMSA_id:6183 Sphingomonas sp. str. VT1 prokMSA_id:24311 Sphingomonas sp. G296-3 prokMSA_id:26964 Sphingomonas sp. LB126 AF335501 prokMSA_id:38158 Sphingomonas agrestis prokMSA_id:39728 Sphingomonas sp. DJ77 AF159257 prokMSA_id:41591 Sphingomonas sp. S-3 prokMSA_id:51138 Sphingobium sp. K40 AJ009708 prokMSA_id:55376 Sphingomonas chungbukensis AY151392 prokMSA_id:67345 Sphingomonas sp. BPC4 AF494538 prokMSA_id:71130 Sphingomonas sp. isolate K74 prokMSA_id:73215 Sphingomonas cloacae AY151393 prokMSA_id:74551 Sphingomonas sp. VM506 AF335468 prokMSA_id:88144 alpha clone:SUP27-27 AB112465 prokMSA_id:88252 HOClCi21 AY328570 prokMSA_id:88345 HOClCi52 AY328601 prokMSA_id:88506 Sphingomonas xenophaga strain: AJ6 AB099632 prokMSA_id:88512 Sphingomonas xenophaga strain: P1 AB099634 prokMSA_id:88570 HOClCi63 AY328612 prokMSA_id:89076 HOClCi12 AY328561 prokMSA_id:89304 HOClCi54 AY328603 prokMSA_id:89410 Sphingomonas xenophaga strain: AJ8 AB099633 prokMSA_id:89594 HOClCi34 AY328583 prokMSA_id:89642 HOClCi6 AY328555 prokMSA_id:89681 HOClCi28 AY328577 prokMSA_id:89964 HOClCi10 AY328559 prokMSA_id:90303 HOClCi14 AY328563 prokMSA_id:90395 Sphingomonas sp. AY277556 prokMSA_id:90560 HOClCi62 AY328611 prokMSA_id:90586 Drinking water MB10 AY328841 prokMSA_id:90665 HOClCi53 AY328602 prokMSA_id:90781 Sphingomonas sp. KH3-2 AF282616 prokMSA_id:93613 Sphingomonas paucimobilis isolate 12H6 AY367017 prokMSA_id:94024 Sphingomonas paucimobilis isolate Sg5 AY367015 prokMSA_id:94188 Sphingomonas paucimobilis isolate Sg6 AY367016 2.28.1.10.1.7514 OTU 1 seq prokMSA_id:6158 Sphingomonas flava ATCC 39723 2.28.1.10.1.7528 OTU 21 seqs prokMSA_id:6147 Sphingomonas yanoikuyae prokMSA_id:6148 Sphingomonas yanoikuyae IFO 15102 prokMSA_id:6160 Sphingomonas yanoikuyae prokMSA_id:6161 Sphingomonas yanoikuyae str. B1 prokMSA_id:6169 Sphingomonas MBIC3992 str. MBIC3992 prokMSA_id:6171 Sphingomonas yanoikuyae GIFU 9882 prokMSA_id:6172 Sphingomonas yanoikuyae str. B1 prokMSA_id:6173 Sphingomonas sp. str. Koll-16 prokMSA_id:6174 Sphingomonas sp. str. SS3 DSM 6432 prokMSA_id:6180 Sphingomonas yanoikuyae IFO 15163 prokMSA_id:6186 Sphingomonas sp. str. Q1 prokMSA_id:6194 Pseudomonas abikonensis IAM 12404 prokMSA_id:6198 Sphingomonas sp. str. UN1F2. U37346 prokMSA_id:42066 Sphingomonas sp. YT prokMSA_id:50339 Sphingobium yanoikuyae prokMSA_id:56342 Sphingomonas sp. KMG425 prokMSA_id:59708 Sphingomonas sp. P2 prokMSA_id:70433 Sphingomonas sp. JRL-4 prokMSA_id:81332 Sphingomonas xenophaga prokMSA_id:84755 Sphingobium yanoikuyae prokMSA_id:90506 HOClCi33 AY328582 2.28.1.10.2 SPG.SP_STR_UN1F1_SUBGROUP 6 seqs 2.28.1.10.2.6800 OTU 1 seq prokMSA_id:49721 clone AF1.5 2.28.1.10.2.7118 OTU 1 seq prokMSA_id:6197 clone LD10 2.28.1.10.2.7218 OTU 1 seq prokMSA_id:50060 Sphingomonas sp. JS1 2.28.1.10.2.7289 OTU 1 seq prokMSA_id:32571 Sphingomonas sp. ML1 2.28.1.10.2.7597 OTU 1 seq prokMSA_id:6193 Sphingomonas DhA-95 str. DhA-95 2.28.1.10.2.7607 OTU 1 seq prokMSA_id:40332 Rhizomonas sp. K6 strain K6 2.28.1.10.3 SPG.SP_STR_SYK6 1 seq 2.28.1.10.3.6901 OTU 1 seq prokMSA_id:6203 Sphingomonas sp. str. SYK6 2.28.1.10.4 ZYM.MOBILIS_SUBGROUP 15 seqs 2.28.1.10.4.6748 OTU 1 seq prokMSA_id:6208 Zymomonas mobilis subsp. pomaceae ATCC 29192 2.28.1.10.4.6902 OTU 1 seq prokMSA_id:6204 Sphingomonas sp. str. A175 2.28.1.10.4.7132 OTU 1 seq prokMSA_id:18013 Sphingomonas sp. K101 isolate K101 2.28.1.10.4.7402 OTU 1 seq prokMSA_id:34245 Sphingomonas-like B12 2.28.1.10.4.7435 OTU 8 seqs prokMSA_id:6209 Zymomonas mobilis subsp. mobilis ATCC 10988 prokMSA_id:6210 Zymomonas mobilis str. ZM4 prokMSA_id:28323 Zymomonas mobilis strain ATCC29192 AF281032 prokMSA_id:38516 Zymomonas mobilis strain ATCC29191 AF281034 prokMSA_id:39861 Zymomonas mobilis prokMSA_id:43499 Zymomonas mobilis strain ATCC10988 prokMSA_id:47404 Zymomonas mobilis cosmid clone 65G3 prokMSA_id:50955 Zymomonas mobilis rrnB operon ; RpfN rpfN complete cds; rrnC 2.28.1.10.4.7545 OTU 1 seq prokMSA_id:22164 Sphingomonas sp. SRS2 strain SRS2 2.28.1.10.4.7548 OTU 2 seqs prokMSA_id:6205 Sphingomonas wittichii strain DSM 6014 prokMSA_id:6206 Afipia genosp. 13 str. G8991 2.28.1.10.5 SPG.PAUCIMOBILIS_SUBGROUP 48 seqs 2.28.1.10.5.6650 OTU 8 seqs prokMSA_id:6238 Caulobacter CB296 str. CB296 prokMSA_id:55900 Sphingomonas sp. eh2 prokMSA_id:56243 Sphingomonas faenia strain MA-olki prokMSA_id:60250 Sphingomonas aurantiaca strain MA405 AJ429238 prokMSA_id:60251 Sphingomonas aurantiaca strain MA306a prokMSA_id:65328 Sphingomonas sp. ATCC 31555 prokMSA_id:71349 Sphingomonas aurantiaca strain MA101b AJ429236 prokMSA_id:78089 alpha clone:APe2_63 AB074640 2.28.1.10.5.6713 OTU 5 seqs prokMSA_id:6223 Pseudomonas echinoides DSM 1805 prokMSA_id:6224 unnamed organism prokMSA_id:6227 str. BD5-9 prokMSA_id:42568 GKS2-124 prokMSA_id:44873 Sphingomonas sp. oral clone AV069 2.28.1.10.5.6737 OTU 1 seq prokMSA_id:77316 Sphingomonas sp. SAFR-010 2.28.1.10.5.6750 OTU 1 seq prokMSA_id:58870 Alpha '#33 orange' 2.28.1.10.5.6790 OTU 4 seqs prokMSA_id:6220 Sphingomonas DD38 str. DD38 prokMSA_id:6249 Sphingomonas sp. JSS-7 prokMSA_id:43848 Sphingomonas sp. MK346 prokMSA_id:63347 Sphingomonas melonis 2.28.1.10.5.6821 OTU 9 seqs prokMSA_id:6216 Sphingomonas sanguinis IFO 13937 . D13726 prokMSA_id:23168 Sphingomonas sp. MK355 prokMSA_id:27012 Sphingomonas sanguis prokMSA_id:42710 Sphingomonas sp. MK331 prokMSA_id:43164 Sphingomonas parapaucimobilis prokMSA_id:44864 Sphingomonas echinoides prokMSA_id:59540 CAGY7 strain CAGY7 prokMSA_id:60396 Sphingomonadaceae LA19 prokMSA_id:95162 alpha- clone S15D-MN50 AJ583168 2.28.1.10.5.6839 OTU 1 seq prokMSA_id:19915 Sphingomonas sp. MK329 2.28.1.10.5.7016 OTU 1 seq prokMSA_id:77307 Sphingomonas sp. SAFR-027 2.28.1.10.5.7374 OTU 2 seqs prokMSA_id:70529 str. 86356 prokMSA_id:73719 Sphingomonas sp. V1 2.28.1.10.5.7411 OTU 1 seq prokMSA_id:6222 Sphingomonas adhaesiva GIFU 11458 2.28.1.10.5.7535 OTU 8 seqs prokMSA_id:6212 Sphingomonas parapaucimobilis IFO 15100 prokMSA_id:6215 Sphingomonas paucimobilis GIFU 2395 prokMSA_id:6217 Sphingomonas paucimobilis ATCC 29837 prokMSA_id:6229 Sphingomonas paucimobilis ATCC 29837 prokMSA_id:23465 alpha 33-FL9B99 AF469338 prokMSA_id:26323 Sphingomonas sp. MK341 prokMSA_id:58866 UNSW2 prokMSA_id:74840 Sphingomonas parapaucimobilis strain TzT-JG-2-6 AJ295690 2.28.1.10.5.7624 OTU 7 seqs prokMSA_id:6221 Pseudomonas Ant20 str. Ant20 prokMSA_id:22537 Sphingomonas sp. M3C203B-B prokMSA_id:71383 Sphingomonas aerolata strain NW12 prokMSA_id:91185 Sphingomonas sp. pfB21 AY336550 prokMSA_id:93239 Sphingomonas sp. iEIV10 AY364031 prokMSA_id:93433 alpha clone KCM-C-8 AJ581618 prokMSA_id:94653 alpha- clone S15B-MN112 AJ583164 2.28.1.10.6 SPG.PRUNI_SUBGROUP 57 seqs 2.28.1.10.6.6653 OTU 5 seqs prokMSA_id:65471 clone a13104 prokMSA_id:74534 clone a13108 prokMSA_id:75048 alpha clone JG34-KF-388 prokMSA_id:77510 Sphingomonas sp. SAFR-028 prokMSA_id:93185 Sphingomonas sp. As2-1 AY367027 2.28.1.10.6.6666 OTU 1 seq prokMSA_id:31927 clone LRE17 2.28.1.10.6.6696 OTU 1 seq prokMSA_id:25242 Sphingomonas sp. strain:IFO 15914 2.28.1.10.6.6808 OTU 2 seqs prokMSA_id:26183 WD290 clone WD290 prokMSA_id:30355 WD267 clone WD267 AJ292601 2.28.1.10.6.6846 OTU 1 seq prokMSA_id:49731 Sphingomonas sp. SIA181-1A1 2.28.1.10.6.6928 OTU 1 seq prokMSA_id:65473 clone a13102 2.28.1.10.6.7007 OTU 2 seqs prokMSA_id:17649 Rhizosphere soil clone RSC-II-67 prokMSA_id:74773 Agricultural soil clone SC-I-4 2.28.1.10.6.7011 OTU 1 seq prokMSA_id:31402 WD286 clone WD286 2.28.1.10.6.7022 OTU 1 seq prokMSA_id:72535 soil clone 367-2 2.28.1.10.6.7038 OTU 1 seq prokMSA_id:78108 alpha clone:APe4_19 2.28.1.10.6.7035 OTU 11 seqs prokMSA_id:6219 Blastobacter sp. str. BF14 ? prokMSA_id:6243 Sphingomonas pruni str. Y-250 IFO 15498 . Y09637 prokMSA_id:6248 Sphingomonas asaccharolytica IFO 10564 prokMSA_id:6251 Sphingomonas sp. str. S213 prokMSA_id:31767 Sphingomonas sp. PC5.2 strain PC5.2 prokMSA_id:40282 Sphingomonas echinoides strain ATCC 14820T prokMSA_id:48722 Sphingomonas sp. PC5.28 strain PC5.28 prokMSA_id:68657 clone KRA30-07 prokMSA_id:71464 Sphingomonas sp. MN 18.3a isolate MN 18.3a AJ313029 prokMSA_id:74176 Sphingomonas sp. oral clone AW030 prokMSA_id:86135 Sphingomonas sp. MN 18.3a strain MN 18.3a 2.28.1.10.6.7121 OTU 10 seqs prokMSA_id:6241 Sphingomonas trueperi LMG 2142 prokMSA_id:19856 Sphingomonas sp. strain:IFO 15495 prokMSA_id:21753 Sphingomonas sp. strain:IFO 15496 prokMSA_id:40384 Sphingomonas pituitosa strain EDIV prokMSA_id:47031 Sphingomonas sp. strain:IFO 15497 prokMSA_id:65321 Sphingomonas sp. ATCC 31853 prokMSA_id:65322 Sphingomonas sp. ATCC 31961 prokMSA_id:65323 Sphingomonas sp. ATCC 21423 prokMSA_id:65327 Sphingomonas sp. ATCC 31554 prokMSA_id:65329 Sphingomonas elodea 2.28.1.10.6.7174 OTU 1 seq prokMSA_id:44980 Sphingomonas sp. clone KL-2-4-7 2.28.1.10.6.7215 OTU 1 seq prokMSA_id:50190 alpha clone SM2B06 2.28.1.10.6.7319 OTU 1 seq prokMSA_id:58867 UNSW1 2.28.1.10.6.7356 OTU 1 seq prokMSA_id:50700 WD208 clone WD208 2.28.1.10.6.7369 OTU 5 seqs prokMSA_id:6234 Asticcacaulis excentricus ACM 1263 prokMSA_id:6235 Asticcacaulis biprosthecium str. MBIC3411 ACM 2498 prokMSA_id:6236 Caulobacter leidyi ATCC 15260 prokMSA_id:6239 Caulobacter leidyi ATCC 15260 prokMSA_id:6240 Caulobacter leidyi ATCC 15260 2.28.1.10.6.7482 OTU 1 seq prokMSA_id:76149 alpha clone JG37-AG-18 2.28.1.10.6.7509 OTU 2 seqs prokMSA_id:34996 Alpha S-N1-8A prokMSA_id:50823 Alpha S-N1-21B 2.28.1.10.6.7526 OTU 1 seq prokMSA_id:73393 soil clone 565-2 2.28.1.10.6.7532 OTU 1 seq prokMSA_id:6245 Caulobacter WCP2020S str. WCP2020S 2.28.1.10.6.7550 OTU 1 seq prokMSA_id:74174 soil clone 768-2 2.28.1.10.6.7555 OTU 1 seq prokMSA_id:20557 mRNA clone sipK48 2.28.1.10.6.7570 OTU 1 seq prokMSA_id:34362 soil clone 739-2 2.28.1.10.6.7625 OTU 3 seqs prokMSA_id:6252 Sphingomonas pruni str. Y-250 IFO 15498 prokMSA_id:6253 Sphingomonas asaccharolytica str. Y-345 IFO 15499 prokMSA_id:6254 Sphingomonas mali str. Y-347 IFO 15500 2.28.1.10.7 RHZ.SUBERIFACIENS_SUBGROUP 13 seqs 2.28.1.10.7.6948 OTU 1 seq prokMSA_id:6255 Rhizomonas suberifaciens IFO 15211 2.28.1.10.7.6951 OTU 1 seq prokMSA_id:6258 clone Sar324 2.28.1.10.7.7309 OTU 1 seq prokMSA_id:85152 alpha SBR9-15/alpha1 2.28.1.10.7.7382 OTU 9 seqs prokMSA_id:17664 delta ARCT1-20 AF440708 prokMSA_id:19587 delta Arctic95A-13 prokMSA_id:20106 delta Arctic96BD-3 prokMSA_id:24014 marine pB1-87 U86517 prokMSA_id:31338 delta Arctic95C-5 prokMSA_id:42569 gamma NAC60-12 prokMSA_id:46779 delta Arctic96AD-7 AF355040 prokMSA_id:47801 marine pN1-23 U86456 prokMSA_id:80055 delta clone WCPAP10 AY220714 2.28.1.10.7.7606 OTU 1 seq prokMSA_id:55355 Sphingomonas sp. Y2 2.28.1.10.9 BLA.NATATORIA_SUBGROUP 42 seqs 2.28.1.10.9.6663 OTU 32 seqs prokMSA_id:6266 str. HTA473 prokMSA_id:6268 Blastomonas natatoria ATCC 35951 prokMSA_id:6290 Sphingomonas B28161 str. B28161 prokMSA_id:6301 Sphingomonas sp. str. F199. U20756 prokMSA_id:6314 Sphingomonas sp. str. SW54. U85838 prokMSA_id:6325 Sphingomonas macrogoltabidus str. 203 IFO 15033 prokMSA_id:23579 Alpha D-St0-8A AB074687 prokMSA_id:25733 Alpha D-St1-4 AB074691 prokMSA_id:29325 Alpha F0813 AF235997 prokMSA_id:30174 Alpha S-St1-6C AB074740 prokMSA_id:36544 Alpha S-St1-8B AB074742 prokMSA_id:38095 Alpha D-St1-8D AB074693 prokMSA_id:40275 Alpha D-A2-9 AB074718 prokMSA_id:45467 Alpha F0917 prokMSA_id:48573 Alpha S-St1-8C AB074743 prokMSA_id:52854 Alpha S-St1-7D1 AB074741 prokMSA_id:66630 alpha clone 1-19 AY094496 prokMSA_id:68724 Glacial ice M3C1.8K-TD9 prokMSA_id:69624 Alpha AP-22 prokMSA_id:70814 Alpha AP-9-1 prokMSA_id:77547 Sphingomonas sp. SAFR-042 AY167827 prokMSA_id:77860 alpha clone:APe9_8 AB074639 prokMSA_id:88816 Drinking water MB28 AY328850 prokMSA_id:89712 Drinking water Y20 AY328823 prokMSA_id:90016 Drinking water Y14 AY328817 prokMSA_id:90301 DSSD3 AY328703 prokMSA_id:90538 Sphingomonas sp. C42 strain C42 AJ575817 prokMSA_id:90554 Drinking water MB27 AY328849 prokMSA_id:90739 DSSD97 AY328794 prokMSA_id:92479 Sphingomonas sp. WSCII AY344805 prokMSA_id:92490 Sphingomonas sp. oral clone FI012 AY349411 prokMSA_id:98472 alpha clone NE73 AJ575710 2.28.1.10.9.6914 OTU 1 seq prokMSA_id:61114 Alpha MGP-68 2.28.1.10.9.7014 OTU 1 seq prokMSA_id:6263 Erythromonas QSSC5-6 str. QSSC5-6 2.28.1.10.9.7052 OTU 1 seq prokMSA_id:19427 clone HTB9 2.28.1.10.9.7090 OTU 6 seqs prokMSA_id:6262 Erythromonas ursincola str. KR-99 DSM 9006 prokMSA_id:6264 Blastomonas natatoria DSM 3183 prokMSA_id:6265 Erythromonas ursincola str. KR-99 DSM 9006 prokMSA_id:6269 Blastomonas natatoria DSM 3183 prokMSA_id:61834 alpha clone CLi292 prokMSA_id:72160 Blastobacter sp. SMCC B0477 2.28.1.10.9.7537 OTU 1 seq prokMSA_id:84022 alpha clone FBP255 2.28.1.10.11 SPG.SUBARCTICA_SUBGROUP 44 seqs 2.28.1.10.11.6633 OTU 1 seq prokMSA_id:21583 clone 1958 2.28.1.10.11.6706 OTU 1 seq prokMSA_id:48962 Agricultural soil isolate SI-15 2.28.1.10.11.6746 OTU 1 seq prokMSA_id:24166 Sphingomonas sp. HL7 2.28.1.10.11.6812 OTU 1 seq prokMSA_id:39863 Sphingomonas sp. ACM-3962 2.28.1.10.11.6958 OTU 1 seq prokMSA_id:52205 alpha clone BIfcii31 2.28.1.10.11.6987 OTU 1 seq prokMSA_id:64891 alpha pT-436 2.28.1.10.11.7019 OTU 1 seq prokMSA_id:39607 WD203 clone WD203 2.28.1.10.11.7048 OTU 1 seq prokMSA_id:17742 WD249 clone WD249 2.28.1.10.11.7075 OTU 5 seqs prokMSA_id:6292 clone T28 prokMSA_id:6298 str. 2a prokMSA_id:22564 FukuS56 prokMSA_id:36069 WD2119 clone WD2119 prokMSA_id:37092 Novosphingobium sp. K16 strain K16 2.28.1.10.11.7100 OTU 3 seqs prokMSA_id:6278 Sphingomonas capsulata GIFU 11526 prokMSA_id:6280 Sphingomonas C28242 str. C28242 prokMSA_id:6297 str. from Lake Gossenkoellesee 2.28.1.10.11.7102 OTU 2 seqs prokMSA_id:80924 Arctic sea ice ARK9996 prokMSA_id:83904 Antarctic R-9221 strain R-9221 2.28.1.10.11.7108 OTU 1 seq prokMSA_id:38923 alpha 4%N-26d-5 2.28.1.10.11.7110 OTU 6 seqs prokMSA_id:6293 Sphingomonas D16 str. D16 prokMSA_id:36281 Sphingomonas sp. KA1 prokMSA_id:57342 Novosphingobium subarcticum prokMSA_id:71360 Sphingomonas sp. AV6C prokMSA_id:77528 Novosphingomonas subarcticum strain SAFR-035 prokMSA_id:78207 alpha clone:APe9_4 2.28.1.10.11.7136 OTU 1 seq prokMSA_id:18607 Novosphingomonas sp. ARI-1 2.28.1.10.11.7165 OTU 1 seq prokMSA_id:77937 Sphingomonas sp. IW3 2.28.1.10.11.7183 OTU 1 seq prokMSA_id:79611 Arctic sea ice ARK10016 2.28.1.10.11.7235 OTU 1 seq prokMSA_id:82573 clone ABLCf85 2.28.1.10.11.7303 OTU 1 seq prokMSA_id:37143 antarctic soil clone bh4.32 2.28.1.10.11.7357 OTU 1 seq prokMSA_id:73289 Unknown marine alpha JP63.1 2.28.1.10.11.7394 OTU 6 seqs prokMSA_id:6285 Sphingomonas aromaticivorans IFO 16084 prokMSA_id:6286 Sphingomonas subterranea IFO 16086 prokMSA_id:70401 Sphingomonas aromaticivorans SMCC B0522 prokMSA_id:70921 Sphingomonas subterraneae SMCC B0478 prokMSA_id:73612 Sphingomonas aromaticivorans SMCC B0695 prokMSA_id:74445 Sphingomonas aromaticivorans SMCC F199 2.28.1.10.11.7470 OTU 1 seq prokMSA_id:78821 Novosphingobium sp. J30 2.28.1.10.11.7576 OTU 5 seqs prokMSA_id:6287 Sphingomonas sp. str. MBIC4193 prokMSA_id:6296 Sphingomonas stygia IFO 16085 prokMSA_id:28794 Alpha F06021 prokMSA_id:44107 Sphingomonas stygialis SMCC B0712 prokMSA_id:51683 FukuN22 2.28.1.10.11.7582 OTU 1 seq prokMSA_id:6295 Sphingomonas QSSC1-14 str. QSSC1-14 2.28.1.10.12 SPG.MACROGOLTABIDUS_SUBGROUP 39 seqs 2.28.1.10.12.6913 OTU 2 seqs prokMSA_id:48821 alpha clone MERTZ_0CM_263 prokMSA_id:61110 Alpha MGP-83 2.28.1.10.12.7176 OTU 1 seq prokMSA_id:26262 Alpha 7CY 2.28.1.10.12.7185 OTU 7 seqs prokMSA_id:32470 clone P3OU-37 AF414579 prokMSA_id:55502 Sphingomonas sp. LCSAOTU29 AF506050 prokMSA_id:60493 Alpha Z14 AF488649 prokMSA_id:60494 Alpha Z15 AF488650 prokMSA_id:63023 clone OSS-11 AY122601 prokMSA_id:79271 clone csbio160302 prokMSA_id:83641 Marine arctic deep-sea FD10 AJ557858 2.28.1.10.12.7280 OTU 1 seq prokMSA_id:6321 str. BD7-1 2.28.1.10.12.7278 OTU 1 seq prokMSA_id:6320 Sphingomonas terrae str. E-1-A IFO 15098 2.28.1.10.12.7285 OTU 12 seqs prokMSA_id:6326 Sphingomonas KT-1 str. KT-1 prokMSA_id:6327 Sphingomonas sp. str. RB2256 prokMSA_id:6329 Sphingomonas sp. str. MBIC3365 prokMSA_id:19973 Sphingomonas alaska strain RB2515 prokMSA_id:40084 Sphingomonas alaskensis strain AF01 prokMSA_id:42377 Sphingomonas alaskensis strain RB2256 prokMSA_id:44192 Sphingomonas sp. strain:IFO 15917 prokMSA_id:52193 Sphingomonas macrogoltabidus prokMSA_id:60721 Monochloroacetic-acid-degrading MCAA3 prokMSA_id:66835 Sphingomonas sp. S37 prokMSA_id:72044 Sphingomonas alaska strain RB2510 prokMSA_id:74035 Sphingomonas sp. JRL-5 2.28.1.10.12.7287 OTU 1 seq prokMSA_id:16401 clone t035 2.28.1.10.12.7342 OTU 1 seq prokMSA_id:50200 clone TAF-B92 2.28.1.10.12.7347 OTU 2 seqs prokMSA_id:21569 clone KS21 prokMSA_id:37060 clone KS11 2.28.1.10.12.7404 OTU 3 seqs prokMSA_id:60514 Sphingomonas sp. B18 AF410927 prokMSA_id:69966 Alpha AP-6 prokMSA_id:72895 Alpha AP-8 2.28.1.10.12.7445 OTU 7 seqs prokMSA_id:6313 Sphingomonas adhaesiva IFO 15099 prokMSA_id:6328 Sphingomonas JSS-54 str. JSS-54 prokMSA_id:31367 Sphingomonas sp. SA-3 prokMSA_id:45857 Sphingopyxis witflariensis prokMSA_id:68620 clone KRA30+14 prokMSA_id:78445 Phenanthrene-degrading M20 prokMSA_id:81691 Sphingomonas sp. EVA17 2.28.1.10.12.7461 OTU 1 seq prokMSA_id:69828 Alpha AP-7 2.28.1.10.13 ERB.LONGUS_SUBGROUP 65 seqs 2.28.1.10.13.6690 OTU 8 seqs prokMSA_id:6343 Porphyrobacter KK348 str. KK348 prokMSA_id:6352 Porphyrobacter MBIC3936 str. MBIC3936 prokMSA_id:6361 Porphyrobacter KK351 str. KK351 prokMSA_id:6364 str. 4b prokMSA_id:21655 alpha clone SM2B03 prokMSA_id:37650 Porphyrobacter tepidarius strain OK5APO prokMSA_id:50853 Alpha F0812 prokMSA_id:81820 clone:A-6 2.28.1.10.13.6700 OTU 8 seqs prokMSA_id:6344 Porphyrobacter tepidarius str. OT3 DSM 10594 prokMSA_id:6345 Porphyrobacter MBIC3897 str. MBIC3897 prokMSA_id:6350 Porphyrobacter neustonensis DSM 9434 prokMSA_id:54234 alpha strain 15s.b prokMSA_id:60586 clone B10 AF407713 prokMSA_id:77813 Alpha A-col-BFA-6 isolate A-col-BFA-6 prokMSA_id:79541 Porphyrobacter cryptus strain ALC-2 prokMSA_id:89759 Drinking water OR2 AY328799 2.28.1.10.13.6749 OTU 1 seq prokMSA_id:79915 Arctic sea ice ARK10031 2.28.1.10.13.6835 OTU 1 seq prokMSA_id:16463 Erythrobacter sp. AS-45 2.28.1.10.13.7036 OTU 38 seqs prokMSA_id:6335 Erythrobacter longus str. OCh 101 ATCC 33941 prokMSA_id:6336 str. MBIC2351 prokMSA_id:6337 Erythrobacter MBIC3019 str. MBIC3019 prokMSA_id:6338 Erythrobacter sp. str. Re1 prokMSA_id:6339 str. MBIC3953 prokMSA_id:6340 str. MBIC3952 prokMSA_id:6359 Erythrobacter longus str. OCh 101 prokMSA_id:6360 Erythrobacter litoralis str. T431-1187 DSM 8509 prokMSA_id:6362 str. MBIC1402 prokMSA_id:6363 Erythromicrobium RE35F/1 str. RE35F/1. AF118020 prokMSA_id:29655 Erythrobacter sp. MBIC4117 prokMSA_id:30952 Erythrobacter sp. MB-16 prokMSA_id:31853 alpha 4%N-26d-7 prokMSA_id:33344 Erythrobacter sp. MBIC4118 prokMSA_id:33905 Erythrobacter citreus AF314528 prokMSA_id:37398 Alpha NAP1 prokMSA_id:38512 Erythrobacter sp. JP13.1 prokMSA_id:40322 alpha 4%N-26d-27 prokMSA_id:43392 Erythrobacter sp. SD-21 prokMSA_id:49902 Erythrobacter citreus AF227259 prokMSA_id:53381 Lutibacterium anuloederans prokMSA_id:58400 Erythrobacter sp. MBIC3031 prokMSA_id:58405 Alpha MBIC3030 prokMSA_id:64083 Erythrobacter flavus strain SW-52 prokMSA_id:64084 Erythrobacter flavus strain SW-46 prokMSA_id:74914 Alpha HY-68 isolate HY-68 prokMSA_id:78562 Erythrobacter sp. 2216.25.25 prokMSA_id:79367 Erythrobacter litoralis strain DSM 8509 prokMSA_id:82642 Sphingomonadaceae T3 prokMSA_id:84563 Marine arctic deep-sea HI9 prokMSA_id:86199 Marine arctic deep-sea FF7a prokMSA_id:86299 Marine arctic deep-sea FC8b prokMSA_id:91093 clone ANT18/2_94 AY135668 prokMSA_id:91554 clone K2-S-15 AY344375 prokMSA_id:91605 K2-13 AY345436 prokMSA_id:95355 clone F53 AY375129 prokMSA_id:98444 clone F24 AY375117 prokMSA_id:98735 clone F18 AY375113 2.28.1.10.13.7155 OTU 1 seq prokMSA_id:58404 Alpha MBIC3035 2.28.1.10.13.7296 OTU 6 seqs prokMSA_id:6351 IAM 12620 prokMSA_id:6353 str. HTA456 prokMSA_id:24395 Agrobacterium sanguineum strain:ATCC 25660 prokMSA_id:39689 Agrobacterium sanguineum strain:ATCC 25661 prokMSA_id:83716 Antarctic R-9216 strain R-9216 prokMSA_id:84218 Antarctic R-9478 strain R-9478 2.28.1.10.13.7572 OTU 1 seq prokMSA_id:76145 alpha clone GuBH2-AG-57 2.28.1.10.13.7643 OTU 1 seq prokMSA_id:36134 isolate HNSS12 2.28.1.10.14 SAN.SIBIRICUS 1 seq 2.28.1.10.14.6720 OTU 1 seq prokMSA_id:6365 Sandaracinobacter sibiricus str. RB16-17 2.28.2 BETA_SUBDIVISION 1755 seqs 2.28.2.1 NEISSERIA_GROUP 52 seqs 2.28.2.1.2 MVR.AERODENITRIFICANS_SUBGROUP 8 seqs 2.28.2.1.2.7683 OTU 3 seqs prokMSA_id:6367 Microvirgula aerodenitrificans str. SGLY2 prokMSA_id:66302 Aquaspirillum dispar prokMSA_id:74077 Microvirgula aerodenitrificans strain NZ753-98 2.28.2.1.2.7945 OTU 1 seq prokMSA_id:66305 Aquaspirillum serpens 2.28.2.1.2.8004 OTU 2 seqs prokMSA_id:16445 Laribacter hongkongensis prokMSA_id:40538 Laribacter hongkongensis strain NZ3166_99 AF449219 2.28.2.1.2.8035 OTU 1 seq prokMSA_id:76586 clone HC-39 2.28.2.1.2.8041 OTU 1 seq prokMSA_id:64884 Aquaspirillum putridiconchylium 2.28.2.1.3 VG.INDIGOFERA_SUBGROUP 1 seq 2.28.2.1.3.8066 OTU 1 seq prokMSA_id:36932 str. 82348 2.28.2.1.4 CRB.VIOLACEUM_SUBGROUP 33 seqs 2.28.2.1.4.7703 OTU 25 seqs prokMSA_id:6373 Chromobacterium MBIC3901 str. MBIC3901 prokMSA_id:55614 Chromobacterium violaceum strain 52 complete prokMSA_id:56639 Chromobacterium sp. 27 complete AY117562 prokMSA_id:63483 Chromobacterium sp. 70 complete prokMSA_id:63486 Chromobacterium sp. 67 complete AY117568 prokMSA_id:63488 Chromobacterium sp. 62 complete prokMSA_id:63489 Chromobacterium sp. 53 complete prokMSA_id:63490 Chromobacterium sp. 44 complete prokMSA_id:63491 Chromobacterium sp. 32 complete AY117563 prokMSA_id:63492 Chromobacterium sp. 06 complete prokMSA_id:63493 Chromobacterium sp. 21 complete prokMSA_id:63494 Chromobacterium sp. 46 complete AY117559 prokMSA_id:63495 Chromobacterium sp. 29 complete prokMSA_id:63496 Chromobacterium violaceum strain 07 complete prokMSA_id:63497 Chromobacterium sp. 23 complete prokMSA_id:63500 Chromobacterium sp. 64 complete prokMSA_id:63503 Chromobacterium violaceum strain 49 complete prokMSA_id:63505 Chromobacterium sp. 48 complete prokMSA_id:92140 Chromobacterium violaceum ATCC 12472 section 4 of 16 of the prokMSA_id:92311 Chromobacterium violaceum ATCC 12472 section 13 of 16 of the prokMSA_id:92420 Chromobacterium violaceum ATCC 12472 section 12 of 16 of the prokMSA_id:92520 Chromobacterium violaceum ATCC 12472 section 15 of 16 of the prokMSA_id:92865 Chromobacterium violaceum ATCC 12472 section 2 of 16 of the prokMSA_id:92928 Chromobacterium violaceum ATCC 12472 section 6 of 16 of the prokMSA_id:93662 Chromobacterium violaceum ATCC 12472 complete genome NC_0050 2.28.2.1.4.7729 OTU 3 seqs prokMSA_id:63484 Chromobacterium sp. 68 complete prokMSA_id:63485 Chromobacterium sp. 71 complete prokMSA_id:63487 Chromobacterium sp. 66 complete 2.28.2.1.4.7853 OTU 1 seq prokMSA_id:6372 str. NKB6 2.28.2.1.4.7862 OTU 1 seq prokMSA_id:6374 str. MBIC3903 2.28.2.1.4.7889 OTU 1 seq prokMSA_id:77630 beta clone:Rs-D51 2.28.2.1.4.8129 OTU 2 seqs prokMSA_id:20511 Beta S-A1-8B prokMSA_id:34835 Alpha S-N1-8C AB074732 2.28.2.1.5 VIT.STERCORARIA_SUBGROUP 2 seqs 2.28.2.1.5.7701 OTU 2 seqs prokMSA_id:6375 Vitreoscilla stercoraria ATCC 15218 prokMSA_id:6376 Vitreoscilla stercoraria str. VT1 2.28.2.1.6 NIS.CANIS_SUBGROUP 5 seqs 2.28.2.1.6.7675 OTU 2 seqs prokMSA_id:75279 Neisseria sp. CCUG 46911 prokMSA_id:75888 Neisseria sp. CCUG 46910 2.28.2.1.6.7867 OTU 1 seq prokMSA_id:6378 Neisseria canis str. H6 ATCC 14687 2.28.2.1.6.8092 OTU 1 seq prokMSA_id:58031 Neisseria dentiae V33 2.28.2.1.6.8143 OTU 1 seq prokMSA_id:42684 Neisseria sp. oral clone AK105 2.28.2.1.8 KIN.KINGAE_SUBGROUP 3 seqs 2.28.2.1.8.7665 OTU 2 seqs prokMSA_id:56599 Simonsiella steedae strain:IAM 14972 prokMSA_id:70506 Simonsiella steedae strain ATCC27409T AF328153 2.28.2.1.8.7885 OTU 1 seq prokMSA_id:6380 Kingella kingae ATCC 23330 2.28.2.3 METHYLOPHILUS_GROUP 13 seqs 2.28.2.3.7664 OTU 1 seq prokMSA_id:74566 beta clone GOBB3-CL330 2.28.2.3.7673 OTU 1 seq prokMSA_id:24165 beta clone BIqi38 2.28.2.3.7687 OTU 2 seqs prokMSA_id:6485 clone OM43 prokMSA_id:48715 marine ZD0202 2.28.2.3.7688 OTU 2 seqs prokMSA_id:6483 clone HstpL60 prokMSA_id:6484 clone HstpL77 2.28.2.3.7842 OTU 1 seq prokMSA_id:29664 marine ZD0412 2.28.2.3.7892 OTU 1 seq prokMSA_id:71394 Methylophilus freyburgensis strain I 42T 2.28.2.3.7923 OTU 1 seq prokMSA_id:6487 str. POCPN-5 2.28.2.3.8029 OTU 1 seq prokMSA_id:40655 beta KEppi37 2.28.2.3.8050 OTU 1 seq prokMSA_id:50624 beta clone BIki2 2.28.2.3.8084 OTU 1 seq prokMSA_id:35310 beta clone GOBB3-CL138 2.28.2.3.8150 OTU 1 seq prokMSA_id:37301 Methylobacillus sp. 12S 2.28.2.4 NITROSOMONAS_GROUP 145 seqs 2.28.2.4.1 GALLIONELLA_ASSEMBLAGE 2 seqs 2.28.2.4.1.7947 OTU 1 seq prokMSA_id:6494 Gallionella ferruginea str. stock Johan 2.28.2.4.1.8103 OTU 1 seq prokMSA_id:21368 clone GOUTA12 2.28.2.4.3 NSS.MULTIFORMIS_SUBGROUP 118 seqs 2.28.2.4.3.7682 OTU 1 seq prokMSA_id:40900 Nitrosovibrio sp. RY6A 2.28.2.4.3.7679 OTU 1 seq prokMSA_id:23416 Agricultural soil clone SC-I-66 2.28.2.4.3.7694 OTU 1 seq prokMSA_id:43839 Nitrosovibrio sp. RY3C 2.28.2.4.3.7711 OTU 1 seq prokMSA_id:19644 clone Ra9C4 2.28.2.4.3.7715 OTU 1 seq prokMSA_id:19603 beta SBR1021 2.28.2.4.3.7744 OTU 2 seqs prokMSA_id:6551 clone TRA3-20. AF047644 prokMSA_id:16969 Tui3-12 2.28.2.4.3.7748 OTU 6 seqs prokMSA_id:20848 clone HTA1 AF418941 prokMSA_id:75970 beta clone S37.42SM AF431292 prokMSA_id:76245 beta clone S51.30PG AF431317 prokMSA_id:84097 beta clone SL2-2-D4F AY214705 prokMSA_id:84231 beta clone SL2-1-A4 prokMSA_id:86126 beta clone SL2-1-E4 2.28.2.4.3.7765 OTU 2 seqs prokMSA_id:21767 gold mine D42 prokMSA_id:83988 clone D135 2.28.2.4.3.7789 OTU 2 seqs prokMSA_id:63758 ammonia-oxidizing clone LD1-B6 prokMSA_id:63761 ammonia-oxidizing clone LD1-B37 2.28.2.4.3.7795 OTU 1 seq prokMSA_id:62854 Nso_WWW-1 2.28.2.4.3.7800 OTU 1 seq prokMSA_id:36578 Banisveld landfill BVC77 2.28.2.4.3.7796 OTU 2 seqs prokMSA_id:6535 Nitrosovibrio TYM9 str. TYM9 prokMSA_id:44054 Nitrosovibrio sp. E12 2.28.2.4.3.7805 OTU 56 seqs prokMSA_id:6503 Nitrosospira briensis str. C-128 prokMSA_id:6504 Nitrosospira sp. str. L115 prokMSA_id:6505 Nitrosospira sp. str. A4 prokMSA_id:6506 Nitrosospira sp. str. A16 prokMSA_id:6517 Nitrosospira briensis str. C-128 prokMSA_id:6518 Nitrosospira sp. str. F3 prokMSA_id:6537 Nitrosospira sp. str. GM4 prokMSA_id:6538 Nitrosospira multiformis str. C-71 ATCC 25196 prokMSA_id:6547 Nitrosospira sp. str. Ka3 prokMSA_id:6548 Nitrosospira sp. str. Ka4 prokMSA_id:6549 Nitrosospira sp. str. O4 prokMSA_id:6550 Nitrosospira sp. str. O13 prokMSA_id:6561 Nitrosospira sp. str. D11 prokMSA_id:6565 Nitrosospira sp. str. III2 prokMSA_id:6589 Nitrosospira tenuis str. Nv1 prokMSA_id:6591 Nitrosospira tenuis str. C-141 prokMSA_id:6595 Nitrosospira sp. NpAV strain NpAV prokMSA_id:6599 Nitrosospira sp. str. B6 prokMSA_id:6600 Nitrosospira sp. str. AF prokMSA_id:6602 Nitrosospira tenuis str. Nv12 prokMSA_id:6604 Nitrosospira sp. str. 40KI prokMSA_id:6605 Nitrosospira sp. str. T7 prokMSA_id:6606 Nitrosospira sp. str. III7 prokMSA_id:17651 Nitrosospira sp. R3c5 prokMSA_id:20624 Nitrosospira sp. TCH716 prokMSA_id:22110 Nitrosospira sp. R5c20 prokMSA_id:22689 Nitrosospira sp. GS833 prokMSA_id:23474 Nitrosospira sp. 39-19 isolate 39-19 prokMSA_id:25430 Nitrosospira sp. Nl20 isolate Nl20 prokMSA_id:29595 Nitrosospira tenuis isolate Nv1 prokMSA_id:31088 Nitrosospira sp. Nsp2 isolate Nsp2 prokMSA_id:33825 clone P3OB-51 prokMSA_id:34829 Nitrosospira sp. 24C isolate 24C prokMSA_id:42974 Nitrosospira sp. Nsp17 isolate Nsp17 prokMSA_id:43237 Nitrosospira sp. NRS527 prokMSA_id:47154 Nitrosospira briensis isolate Nsp10 prokMSA_id:52631 Nitrosospira sp. BF16c46 prokMSA_id:69065 Nitrosospira sp. Ka3 prokMSA_id:69071 Nitrosospira sp. Nsp12 AY123801 prokMSA_id:69130 Nitrosospira sp. Nsp62 prokMSA_id:69164 Nitrosospira sp. III7 prokMSA_id:69429 Nitrosospira sp. Nsp1 prokMSA_id:69463 Nitrosovibrio tenuis prokMSA_id:69564 Nitrosospira sp. Nsp5 AY123793 prokMSA_id:69607 Nitrosospira sp. Nl5 prokMSA_id:69995 Nitrosospira sp. Nv6 isolate Nv6 prokMSA_id:70700 Nitrosospira briensis prokMSA_id:71885 Nitrosospira sp. Nsp40 prokMSA_id:72023 Nitrosospira sp. L115 AY123796 prokMSA_id:72194 Nitrosospira sp. Nsp58 prokMSA_id:72266 Nitrosospira sp. Nsp17 prokMSA_id:73045 Nitrosospira sp. Nv6 prokMSA_id:73871 Nitrosospira sp. Nsp2 prokMSA_id:73957 Nitrosospira sp. Nsp41 prokMSA_id:73969 Nitrosospira sp. Nsp65 prokMSA_id:74048 Nitrosospira sp. Nsp57 2.28.2.4.3.7806 OTU 1 seq prokMSA_id:28735 clone 33-PA45B98 2.28.2.4.3.7808 OTU 1 seq prokMSA_id:85647 clone CCU25 2.28.2.4.3.7819 OTU 1 seq prokMSA_id:36586 2.28.2.4.3.7858 OTU 1 seq prokMSA_id:6603 Nitrosospira sp. str. Np22-21 2.28.2.4.3.7865 OTU 6 seqs prokMSA_id:6609 str. soil sample A from pH 4.2 soil plot prokMSA_id:6611 clone DT-2.3 prokMSA_id:6612 clone DT-3.2 prokMSA_id:6613 clone DT-3.6 prokMSA_id:6614 clone DT-4.5 prokMSA_id:6615 clone DT-4.10 2.28.2.4.3.7896 OTU 4 seqs prokMSA_id:16904 Lake Michigan sediment LMBGA6-26 AF320925 prokMSA_id:48832 Lake Michigan sediment LMBGA4 AF320917 prokMSA_id:72414 Lake Michigan sediment LMRTGA4 AF320924 prokMSA_id:78574 clone JG30-KF-AS41 2.28.2.4.3.7906 OTU 1 seq prokMSA_id:6530 clone Ws23 2.28.2.4.3.7931 OTU 4 seqs prokMSA_id:6596 Nitrosospira multiformis str. C-71 ATCC 25196 prokMSA_id:19086 Nitrosospira sp. PJA1 prokMSA_id:70906 Nitrosospira multiformis prokMSA_id:75979 Nitrosospira multiformis 2.28.2.4.3.7930 OTU 2 seqs prokMSA_id:38503 Nitrosomonas sp. NM 41 prokMSA_id:73796 Nitrosomonas sp. Nm58 2.28.2.4.3.7976 OTU 1 seq prokMSA_id:74278 Nitrosomonas sp. Nm80 2.28.2.4.3.7972 OTU 1 seq prokMSA_id:67252 clone F13.40 2.28.2.4.3.7989 OTU 1 seq prokMSA_id:74628 Nitrosomonas sp. Nm59 2.28.2.4.3.7996 OTU 1 seq prokMSA_id:43046 beta GC152 2.28.2.4.3.8007 OTU 1 seq prokMSA_id:65813 soil clone S0159 2.28.2.4.3.8019 OTU 1 seq prokMSA_id:17997 beta GaN50324 2.28.2.4.3.8017 OTU 1 seq prokMSA_id:28664 Methylophilus sp. clone GOBB3-CL121 2.28.2.4.3.8039 OTU 2 seqs prokMSA_id:23587 SY6-23 prokMSA_id:44238 SY6-54 AF296203 2.28.2.4.3.8054 OTU 1 seq prokMSA_id:29614 antarctic soil clone bh1.36 2.28.2.4.3.8064 OTU 1 seq prokMSA_id:30012 Methylophilus sp. clone GOBB3-CL275 2.28.2.4.3.8116 OTU 1 seq prokMSA_id:6542 str. soil sample A from pH 4.2 soil plot 2.28.2.4.3.8137 OTU 5 seqs prokMSA_id:6524 clone ACK-C30 prokMSA_id:6587 str. LD28 prokMSA_id:32326 Banisveld landfill BVC68 AY013694 prokMSA_id:47151 beta clone PRD01a011B prokMSA_id:70311 beta clone PRD01b012B 2.28.2.4.3.8149 OTU 1 seq prokMSA_id:18485 beta clone Spb253 2.28.2.4.3.8153 OTU 1 seq prokMSA_id:28345 beta clone 11 2.28.2.4.3.8159 OTU 1 seq prokMSA_id:34857 Methylophilus sp. clone GOBB3-CL297 2.28.2.4.4 NMN.COMMUNIS_SUBGROUP 1 seq 2.28.2.4.4.7831 OTU 1 seq prokMSA_id:78042 Nitrosomonas nitrosa isolate Nm90 2.28.2.4.6 NMN.EUROPAEA_SUBGROUP 20 seqs 2.28.2.4.6.7770 OTU 6 seqs prokMSA_id:6643 Nitrosomonas sp. str. HPC101 prokMSA_id:6650 Nitrosomonas sp. str. Koll-21 prokMSA_id:46231 Nitrosomonas europaea prokMSA_id:53386 Nitrosomonas sp. ENI-11 prokMSA_id:82338 Ammonia-oxidizing NS500-9 prokMSA_id:82677 Nitrosomonas europaea ATCC 19718 complete genome; segment 1/ 2.28.2.4.6.7777 OTU 2 seqs prokMSA_id:22792 Nitrosomonas sp. DYS323 prokMSA_id:50735 Nitrosomonas sp. DYS317 2.28.2.4.6.7803 OTU 1 seq prokMSA_id:71516 beta clone 7.18.6 2.28.2.4.6.7891 OTU 1 seq prokMSA_id:40156 Nitrosomonas sp. K1 2.28.2.4.6.8145 OTU 10 seqs prokMSA_id:6642 Nitrosomonas sp. str. GH22 prokMSA_id:6651 Nitrosomonas TK794 str. TK794 prokMSA_id:18945 beta clone BIvii9 prokMSA_id:21019 Nitrosomonas sp. TK794 prokMSA_id:30994 Nitrosomonas sp. isolate F6 prokMSA_id:33364 Nitrosomonas eutropha isolate Nm57 prokMSA_id:33788 Nitrosomonas sp. IWT202 prokMSA_id:44831 Nitrosomonas sp. CNS326 prokMSA_id:47242 Nitrosomonas sp. G1 prokMSA_id:69328 Nitrosomonas eutropha 2.28.2.4.7 NMN.MARINA_SUBGROUP 4 seqs 2.28.2.4.7.7672 OTU 1 seq prokMSA_id:6662 Nitrosomonas marina str. Nm22 2.28.2.4.7.7774 OTU 1 seq prokMSA_id:42181 Estuarine TA 921-i-NH4 2.28.2.4.7.7784 OTU 2 seqs prokMSA_id:20247 Nitrosomonas cryotolerans isolate Nm55 prokMSA_id:49524 Nitrosomonas cryotolerans AF272423 2.28.2.5 AZOARCUS_GROUP 235 seqs 2.28.2.5.2 HGH.THERMOLUTEOLUS_SUBGROUP 30 seqs 2.28.2.5.2.7667 OTU 1 seq prokMSA_id:29990 tbr1-14 2.28.2.5.2.7690 OTU 1 seq prokMSA_id:40122 Hydrogenophilus sp. clone 2.28.2.5.2.7706 OTU 13 seqs prokMSA_id:6685 str. HMD444 prokMSA_id:21915 mle1-14 prokMSA_id:45235 mle1-3 prokMSA_id:50274 tbr4-2 prokMSA_id:70430 tbr1-3 prokMSA_id:70657 tbr4-5 prokMSA_id:70880 tbr1-4 prokMSA_id:72026 mle1-43 prokMSA_id:72616 tbr4-67 prokMSA_id:72763 mle1-32 prokMSA_id:73564 tbr4-24 prokMSA_id:84214 Petrobacter succinimandens BON4 prokMSA_id:86365 Petrobacter succinimandens BON2 2.28.2.5.2.7783 OTU 2 seqs prokMSA_id:6678 Hydrogenophilus thermoluteolus str. TH-1 prokMSA_id:6684 Hydrogenophilus thermoluteolus str. TH-4 2.28.2.5.2.7903 OTU 1 seq prokMSA_id:69403 Beta F06002 2.28.2.5.2.7953 OTU 3 seqs prokMSA_id:6679 clone OPB30. AF026979 prokMSA_id:34315 beta clone SM1E12 prokMSA_id:41556 beta clone SM2G09 2.28.2.5.2.7967 OTU 4 seqs prokMSA_id:6673 Azoarcus sp. str. S5b2 prokMSA_id:26304 A42 AF158720 prokMSA_id:32718 A49 AF158721 prokMSA_id:37979 PM8-1 AF158715 2.28.2.5.2.7975 OTU 1 seq prokMSA_id:85885 beta clone ST01-SN1D 2.28.2.5.2.8048 OTU 1 seq prokMSA_id:26330 beta clone CD11B1 2.28.2.5.2.8060 OTU 1 seq prokMSA_id:73404 tbr4-27 2.28.2.5.2.8090 OTU 1 seq prokMSA_id:51448 Candidatus Procabacter sp. TUMSJ-341 2.28.2.5.2.8151 OTU 1 seq prokMSA_id:29097 tbr4-23 2.28.2.5.3 DCL.AGITATUS_SUBGROUP 42 seqs 2.28.2.5.3.7666 OTU 1 seq prokMSA_id:67259 clone F13.33 2.28.2.5.3.7721 OTU 1 seq prokMSA_id:34983 beta clone 4-21 2.28.2.5.3.7734 OTU 1 seq prokMSA_id:6699 clone SJA-10 2.28.2.5.3.7772 OTU 1 seq prokMSA_id:29482 Cardococcus australiensis 2.28.2.5.3.7817 OTU 1 seq prokMSA_id:59932 beta clone ccs265 2.28.2.5.3.7836 OTU 1 seq prokMSA_id:30998 clone d122 2.28.2.5.3.7966 OTU 1 seq prokMSA_id:60817 beta clone Cart-N1 2.28.2.5.3.7991 OTU 1 seq prokMSA_id:60588 clone G94 2.28.2.5.3.8052 OTU 31 seqs prokMSA_id:6676 clone WCHA1-52 prokMSA_id:6696 Dechlorimonas agitatus str. CKB prokMSA_id:6700 Dechlorimonas CL str. CL prokMSA_id:6701 Dechlorimonas NM str. NM prokMSA_id:6702 Dechlorimonas SIUL str. SIUL prokMSA_id:6703 Dechlorimonas MissR str. MissR prokMSA_id:25359 Dechloromonas sp. JM prokMSA_id:25770 Dechloromonas sp. JJ prokMSA_id:29770 Dechloromonas sp. RCB prokMSA_id:30433 Dechloromonas sp. CL24 prokMSA_id:39167 beta clone Spb272 prokMSA_id:41487 Perchlorate-reducing MLC33 prokMSA_id:50481 beta SBRH147 prokMSA_id:59909 beta clone ccslm218 prokMSA_id:59918 Rhodocyclaceae clone ccs296 prokMSA_id:59921 Rhodocyclaceae clone ccs272 prokMSA_id:59931 Rhodocyclaceae clone ccs2105 prokMSA_id:59933 Rhodocyclaceae clone ccs203 prokMSA_id:60760 Dechloromonas sp. PC1 prokMSA_id:61806 Beta AC1 prokMSA_id:61824 beta clone CLi61 prokMSA_id:62036 clone P4-4 prokMSA_id:62388 beta clone FTLpost11 prokMSA_id:65405 beta clone R70 prokMSA_id:69212 Dechloromonas sp. LT-1 prokMSA_id:75126 Dechlorimonas sp. SIUL strain ED1 prokMSA_id:76034 RO_clone_110 prokMSA_id:77750 clone J2_3 prokMSA_id:82517 Perchlorate-reducing PMC prokMSA_id:83019 Perchlorate-reducing RC1 prokMSA_id:83320 Perchlorate-reducing EAB2 2.28.2.5.3.8056 OTU 1 seq prokMSA_id:43118 SA35 2.28.2.5.3.8073 OTU 1 seq prokMSA_id:17553 mle1-7 2.28.2.5.3.8161 OTU 1 seq prokMSA_id:59895 beta clone ccspost2132 2.28.2.5.5 RCY.TENUIS_SUBGROUP 34 seqs 2.28.2.5.5.7668 OTU 1 seq prokMSA_id:6713 Rhodocyclus tenuis str. 3760 DSM 110 2.28.2.5.5.7670 OTU 1 seq prokMSA_id:6717 Propionibacter pelophilus str. asp 66 2.28.2.5.5.7684 OTU 1 seq prokMSA_id:64665 Thiobacillus plumbophilus strain DSM 6690 2.28.2.5.5.7691 OTU 1 seq prokMSA_id:6720 clone SJA-109 2.28.2.5.5.7692 OTU 1 seq prokMSA_id:6721 Propionivibrio dicarboxylicus DSM 5885 2.28.2.5.5.7717 OTU 2 seqs prokMSA_id:6712 Rhodocyclus tenuis str. SW18 prokMSA_id:6718 Rhodocyclus tenuis str. 2761 DSM 109 2.28.2.5.5.7723 OTU 1 seq prokMSA_id:50035 clone t011 2.28.2.5.5.7763 OTU 1 seq prokMSA_id:61822 beta clone CLi64 2.28.2.5.5.7779 OTU 1 seq prokMSA_id:70708 clone GIF16 2.28.2.5.5.7857 OTU 6 seqs prokMSA_id:6716 Dechlorisoma Iso1 str. Iso1 prokMSA_id:6722 Dechlorisoma suilla str. PS prokMSA_id:6723 Dechlorisoma SDGM str. SDGM prokMSA_id:6724 Dechlorisoma Iso2 str. Iso2 prokMSA_id:59899 beta clone ccslm36 prokMSA_id:60759 Dechlorosoma sp. PCC 2.28.2.5.5.7875 OTU 2 seqs prokMSA_id:36331 beta clone Ebpr16 prokMSA_id:45179 SA34 2.28.2.5.5.7893 OTU 1 seq prokMSA_id:36918 Agricultural soil clone SC-I-71 2.28.2.5.5.7910 OTU 7 seqs prokMSA_id:6714 Azoarcus 6a3 str. 6a3. AF011347 prokMSA_id:6715 Azoarcus BS2-3 str. BS2-3. AF011351 prokMSA_id:6719 clone SJA-52 prokMSA_id:35442 Dechlorosoma sp. PDX prokMSA_id:35520 Dechlorosoma sp. KJ prokMSA_id:76627 beta clone S15A-MN2 prokMSA_id:77054 beta clone S15A-MN6 2.28.2.5.5.7909 OTU 1 seq prokMSA_id:44355 Iron-oxidizing acidophile m-1 2.28.2.5.5.7938 OTU 1 seq prokMSA_id:54073 clone:BCf6-08 2.28.2.5.5.8001 OTU 2 seqs prokMSA_id:65363 beta clone Orbal D41 prokMSA_id:74718 beta clone Orbal D54 2.28.2.5.5.8036 OTU 1 seq prokMSA_id:74988 beta clone Sh765B-TzT-132 2.28.2.5.5.8080 OTU 1 seq prokMSA_id:17475 Banisveld landfill BVC47 2.28.2.5.5.8109 OTU 1 seq prokMSA_id:25562 clone p-2552-9F5 2.28.2.5.5.8122 OTU 1 seq prokMSA_id:42580 Propionivibrio limicola strain GolChi1 T 2.28.2.5.6 DG.ZOOGLOEOIDES_SUBGROUP_II 25 seqs 2.28.2.5.6.7726 OTU 1 seq prokMSA_id:6735 clone SJA-21 2.28.2.5.6.7728 OTU 1 seq prokMSA_id:6736 clone Dr18 2.28.2.5.6.7753 OTU 4 seqs prokMSA_id:6731 Duganella zoogloeoides IAM 12136 prokMSA_id:6732 Duganella zoogloeoides str. 235 N.C. Dondero ATCC 19324 prokMSA_id:6733 Duganella zoogloeoides ATCC 19544. X74913 prokMSA_id:50725 clone ASB026 AB010611 2.28.2.5.6.7809 OTU 8 seqs prokMSA_id:18572 sludge H13 AF234737 prokMSA_id:19927 sludge H22 AF234697 prokMSA_id:22275 sludge A16 prokMSA_id:25035 sludge S21 AF234738 prokMSA_id:34086 PHOS-HC20 prokMSA_id:37845 sludge H40 prokMSA_id:40129 sludge H10 AF234693 prokMSA_id:45043 sludge H27 AF234722 2.28.2.5.6.7828 OTU 1 seq prokMSA_id:17331 beta clone Elb168 2.28.2.5.6.7951 OTU 2 seqs prokMSA_id:59335 clone HP1A03 prokMSA_id:73258 clone LPB19 2.28.2.5.6.7956 OTU 1 seq prokMSA_id:6743 Zoogloea sp. str. DhA-35 2.28.2.5.6.7974 OTU 1 seq prokMSA_id:65702 soil clone C1235 2.28.2.5.6.8026 OTU 1 seq prokMSA_id:6738 Zoogloea DhA-35 str. DhA-35 2.28.2.5.6.8127 OTU 4 seqs prokMSA_id:70359 Zoogloea resiniphila strain PIV-3C2y prokMSA_id:70483 Zoogloea resiniphila strain PIV-3A2w prokMSA_id:72759 Zoogloea resiniphila strain PIV-3C2w prokMSA_id:73489 Zoogloea resiniphila strain PIV-3A2y 2.28.2.5.6.8131 OTU 1 seq prokMSA_id:66107 beta clone:KU34 2.28.2.5.7 THA.AROMATICA_SUBGROUP 36 seqs 2.28.2.5.7.7733 OTU 1 seq prokMSA_id:30710 beta clone 36-9 2.28.2.5.7.7815 OTU 1 seq prokMSA_id:42293 Thauera aromatica strain 4FB1 2.28.2.5.7.7880 OTU 3 seqs prokMSA_id:6750 Thauera terpenica str. 58Eu DSM 12139 prokMSA_id:6752 Thauera terpenica str. 21Mol prokMSA_id:6753 str. pCyN2 2.28.2.5.7.7907 OTU 17 seqs prokMSA_id:6748 Pseudomonas butanovora IAM 12574. AB021377 prokMSA_id:6751 clone SJA-186 prokMSA_id:6755 clone AX39 prokMSA_id:6756 Thauera selenatis str. Ax ATCC 55363 prokMSA_id:6757 Thauera aromatica str. K172 clone K1 DSM 6984 prokMSA_id:6758 Thauera mz1t str. mz1t prokMSA_id:6759 Thauera aromatica str. 3CB-1 prokMSA_id:6760 Azoarcus mXyN1 str. mXyN1 prokMSA_id:6761 Thauera mechernichii str. TL1 prokMSA_id:6763 Thauera T1 str. T1 prokMSA_id:22130 Thauera aromatica strain LG356 prokMSA_id:23705 Thauera aromatica strain 3CB2 prokMSA_id:36677 Thauera aromatica strain 3BB1 prokMSA_id:38171 beta SBR1022 prokMSA_id:44747 Thauera aromatica strain S100 prokMSA_id:58572 Thauera sp. PIV-1 strain PIV-1 prokMSA_id:70860 Thauera aromatica 2.28.2.5.7.7915 OTU 1 seq prokMSA_id:27286 Sterolibacterium denitrificans strain Chol-1S 2.28.2.5.7.7925 OTU 5 seqs prokMSA_id:6762 Thauera selenatis str. Ax ATCC 55363 prokMSA_id:25264 Thauera sp. B4P strain B4P prokMSA_id:36782 beta SBR1011 prokMSA_id:40990 Thauera sp. S2 strain S2 prokMSA_id:63593 Thauera sp. DNT-1 2.28.2.5.7.7958 OTU 1 seq prokMSA_id:6747 Thauera linaloolentis str. 47Lol DSM 12138 2.28.2.5.7.7962 OTU 1 seq prokMSA_id:6749 str. 72Chol 2.28.2.5.7.7973 OTU 1 seq prokMSA_id:6754 Azoarcus sp. str. LU1 2.28.2.5.7.8099 OTU 1 seq prokMSA_id:23232 oxSCC-3 2.28.2.5.7.8114 OTU 1 seq prokMSA_id:67829 beta clone 44a-U1-9 2.28.2.5.7.8134 OTU 1 seq prokMSA_id:40231 GR-WP33-36 clone GR-WP33-36 2.28.2.5.7.8142 OTU 1 seq prokMSA_id:18623 Thauera aromatica strain 4FB2 2.28.2.5.7.8156 OTU 1 seq prokMSA_id:71611 Azoarcus sp 2.28.2.5.8 AZC.INDIGENS_SUBGROUP 68 seqs 2.28.2.5.8.7669 OTU 2 seqs prokMSA_id:6801 Azoarcus sp. str. BH72. L15530 prokMSA_id:6802 Azoarcus BH72 str. BH72 2.28.2.5.8.7674 OTU 22 seqs prokMSA_id:6766 Azoarcus denitrificians str. Td-15 prokMSA_id:6767 Azoarcus anaerobius str. LuFRes1 DSM 12081 prokMSA_id:6768 str. pCyN1. Y17284 prokMSA_id:6769 Azoarcus CR23 str. CR23 prokMSA_id:6770 Azoarcus PH002 str. PH002 prokMSA_id:6771 Azoarcus 22Lin str. 22Lin prokMSA_id:6773 Azoarcus EbN1 str. EbN1 prokMSA_id:6774 Azoarcus PbN1 str. PbN1 prokMSA_id:6776 Azoarcus sp. str. M3 prokMSA_id:6777 Azoarcus sp. str. M3 prokMSA_id:6778 Azoarcus tolulyticus str. BL11 prokMSA_id:6781 Azoarcus denitrificians str. Td-17 prokMSA_id:6782 Azoarcus denitrificians str. Td-3 prokMSA_id:6784 Azoarcus denitrificians str. Td-21 prokMSA_id:6796 Azoarcus FL05 str. FL05 prokMSA_id:6805 Azoarcus tolulyticus str. XQ3 prokMSA_id:6809 Azoarcus denitrificians str. Td-2 prokMSA_id:39189 Azoarcus buckelii strain U120 prokMSA_id:49535 Eub No. 21 prokMSA_id:59917 beta clone ccs250 prokMSA_id:59923 beta clone ccs2133 prokMSA_id:66610 Azoarcus sp. HxN1 2.28.2.5.8.7709 OTU 1 seq prokMSA_id:29264 Candidatus Procabacter sp. TUMSJ-226 2.28.2.5.8.7724 OTU 1 seq prokMSA_id:6783 Azoarcus communis str. SWub3 DSM 12120 2.28.2.5.8.7751 OTU 1 seq prokMSA_id:6807 Azoarcus denitrificians str. Td-19 2.28.2.5.8.7750 OTU 1 seq prokMSA_id:75583 beta clone JG37-AG-35 2.28.2.5.8.7760 OTU 1 seq prokMSA_id:6794 clone OPB37 2.28.2.5.8.7758 OTU 2 seqs prokMSA_id:6792 Azoarcus indigens str. VB32 LMG 9092 prokMSA_id:6806 Azoarcus indigens str. VB32 . L15531 2.28.2.5.8.7759 OTU 1 seq prokMSA_id:6793 str. OS isolate ac-16 2.28.2.5.8.7787 OTU 1 seq prokMSA_id:46568 beta clone:pHAuB-J 2.28.2.5.8.7794 OTU 1 seq prokMSA_id:45625 beta SBR1009 2.28.2.5.8.7824 OTU 1 seq prokMSA_id:77638 beta clone:Rs-B77 2.28.2.5.8.7852 OTU 1 seq prokMSA_id:31143 clone 1405-9 2.28.2.5.8.7948 OTU 14 seqs prokMSA_id:6775 Azoarcus tolulyticus str. Tol-4 prokMSA_id:6779 Azoarcus toluclasticus str. MF7 prokMSA_id:6780 Azoarcus toluclasticus str. MF63 prokMSA_id:6785 Azoarcus evansii str. KB740 DSM 6898 prokMSA_id:6791 Azoarcus ToN1 str. ToN1 prokMSA_id:6795 Azoarcus sp. str. pF6 prokMSA_id:6797 Azoarcus T str. T prokMSA_id:6804 Azoarcus denitrificians str. Td-1 prokMSA_id:30791 Azoarcus tolulyticus strain 4FB10 prokMSA_id:35148 Azoarcus tolulyticus strain 2FB6 prokMSA_id:44225 Azoarcus sp. CC-11 prokMSA_id:51917 Azoarcus tolulyticus strain 2FB2 prokMSA_id:64547 Azoarcus sp. CIB prokMSA_id:66959 Azoarcus sp. HA 2.28.2.5.8.7980 OTU 3 seqs prokMSA_id:31185 beta GC24 prokMSA_id:32687 beta SBR1001 prokMSA_id:48813 beta SBR2080 2.28.2.5.8.8000 OTU 1 seq prokMSA_id:6772 Thiobacillus aquaesulis 2.28.2.5.8.8053 OTU 1 seq prokMSA_id:59905 gamma clone ccslm229 2.28.2.5.8.8111 OTU 2 seqs prokMSA_id:44377 Lake Michigan sediment LMBA38 AF320975 prokMSA_id:52341 Lake Michigan sediment LMBA38 and genes 2.28.2.5.8.8130 OTU 7 seqs prokMSA_id:6786 clone S3 prokMSA_id:6787 clone H25 prokMSA_id:6789 clone A2-33 prokMSA_id:6799 clone S23 prokMSA_id:6800 clone H30 prokMSA_id:47981 sludge H35 prokMSA_id:49117 sludge S10 2.28.2.5.8.8136 OTU 4 seqs prokMSA_id:37585 Candidatus Procabacter acanthamoebae prokMSA_id:43515 Candidatus Procabacter sp. P23 AF177425 prokMSA_id:45071 Candidatus Procabacter sp. UWE2 prokMSA_id:52040 Candidatus Procabacter sp. UWC6 2.28.2.8 BORDETELLA_GROUP 97 seqs 2.28.2.8.1 LAU.MIRABILIS_SUBGROUP 2 seqs 2.28.2.8.1.7720 OTU 1 seq prokMSA_id:81664 clone KD1-79 2.28.2.8.1.8096 OTU 1 seq prokMSA_id:83049 clone CCU16 2.28.2.8.2 SUT.WADSWORTHENSIS_SUBGROUP 2 seqs 2.28.2.8.2.7970 OTU 2 seqs prokMSA_id:6821 Sutterella wadsworthensis str. WAL 9054 prokMSA_id:6822 Sutterella wadsworthensis str. WAL 7877 2.28.2.8.3 PLS.EUROPAEA_SUBGROUP 20 seqs 2.28.2.8.3.7700 OTU 7 seqs prokMSA_id:18037 Oligella urethralis prokMSA_id:31943 Oligella urethralis AJ247262 prokMSA_id:70363 Oligella urethralis strain LMG 1015 AJ251911 prokMSA_id:71251 Oligella urethralis AF227163 prokMSA_id:72841 Oligella urethralis AJ247263 prokMSA_id:82610 Oligella urethralis prokMSA_id:84552 Oligella urethralis strain COH-1 AY178994 2.28.2.8.3.7731 OTU 1 seq prokMSA_id:6833 Alcaligenes sp. str. 05-36 2.28.2.8.3.7732 OTU 1 seq prokMSA_id:6838 Alcaligenes sp. str. 15-58 2.28.2.8.3.7840 OTU 3 seqs prokMSA_id:6824 Taylorella asinigenitalis UCD 1 prokMSA_id:30921 Taylorella asinigenitalis strain UK-1 prokMSA_id:48585 Taylorella asinigenitalis strain UK-2 2.28.2.8.3.7868 OTU 2 seqs prokMSA_id:6825 Pelistega europaea str. N57 LMG 10982 prokMSA_id:6840 Pelistega europaea LMG 15725 2.28.2.8.3.7881 OTU 6 seqs prokMSA_id:6823 Taylorella equigenitalis NCTC 11184 prokMSA_id:18745 Taylorella equigenitalis strain 10783 AF297172 prokMSA_id:27919 Taylorella equigenitalis prokMSA_id:29584 Taylorella equigenitalis strain 96-178 AF297173 prokMSA_id:33535 Taylorella equigenitalis prokMSA_id:47850 Taylorella equigenitalis strain NCTC11184 complete 2.28.2.8.4 BRD.BRONCHISEPTICA_SUBGROUP 73 seqs 2.28.2.8.4.7716 OTU 1 seq prokMSA_id:81802 clone KD9-65 2.28.2.8.4.7737 OTU 1 seq prokMSA_id:68624 clone KRA30+06A 2.28.2.8.4.7764 OTU 1 seq prokMSA_id:62502 Alcaligenaceae clone LA1-B29N 2.28.2.8.4.7768 OTU 1 seq prokMSA_id:38105 clone p-861-a5 2.28.2.8.4.7780 OTU 1 seq prokMSA_id:6858 clone DA014 2.28.2.8.4.7781 OTU 1 seq prokMSA_id:6859 Alcaligenes sp. isolate CCUG 36768 2.28.2.8.4.7788 OTU 1 seq prokMSA_id:73994 clone KRA30-58 2.28.2.8.4.7802 OTU 1 seq prokMSA_id:6860 endosymbiont of Blastocrithidia culicis 2.28.2.8.4.7833 OTU 3 seqs prokMSA_id:24220 Pigmentiphaga kullae strain K24 prokMSA_id:62876 Pigmentiphaga sp. NDS-1 prokMSA_id:72020 Blackwater bioreactor BW5 2.28.2.8.4.7838 OTU 10 seqs prokMSA_id:6845 Alcaligenes defragrans str. 54Pin DSM 12141 prokMSA_id:6846 Alcaligenes NKNTAU str. NKNTAU prokMSA_id:6850 str. rA9 prokMSA_id:6851 Alcaligenes defragrans str. 51Men prokMSA_id:6852 Alcaligenes defragrans str. 62Car prokMSA_id:6853 Alcaligenes defragrans str. 65Phen prokMSA_id:66241 Alcaligenes defragrans isolate TJ4 prokMSA_id:66242 Alcaligenes defragrans isolate N1 prokMSA_id:66243 Alcaligenes defragrans isolate TG26 prokMSA_id:72856 Elbe River snow isolate Iso14 2.28.2.8.4.7874 OTU 1 seq prokMSA_id:26472 clone Car117fc 2.28.2.8.4.7902 OTU 18 seqs prokMSA_id:6864 Alcaligenes faecalis subsp. dimethylsulfidosus str. M3A prokMSA_id:18554 clone RB7C3 prokMSA_id:19516 soil clone 1392-1 prokMSA_id:25009 Alcaligenes faecalis prokMSA_id:28612 clone RA7C9 prokMSA_id:29960 clone Ra9C2 prokMSA_id:31266 clone RA7C16 prokMSA_id:51247 clone RB13C11 prokMSA_id:74694 Alcaligenes faecalis subsp. parafaecalis strain G prokMSA_id:81261 clone ZZ9C4 prokMSA_id:81518 clone ZZ14AC6 prokMSA_id:82057 clone ZZ14C6 prokMSA_id:88201 Alcaligenes sp. 2-1 AY296716 prokMSA_id:88431 Alcaligenes sp. 2-6 AY296717 prokMSA_id:92941 Alcaligenes sp. IS-17 complete AY346138 prokMSA_id:92976 Alcaligenes sp. IS-46 complete AY346136 prokMSA_id:93023 Alcaligenes sp. IS-33 complete AY346139 prokMSA_id:93083 Alcaligenes sp. IS-67 complete AY346140 2.28.2.8.4.7926 OTU 1 seq prokMSA_id:50693 clone HTCC2 2.28.2.8.4.7932 OTU 7 seqs prokMSA_id:6869 Alcaligenes sp. str. 151 prokMSA_id:47955 clone GIF8 AF407199 prokMSA_id:64740 Achromobacter xylosoxidans subsp. denitrificans strain DSM 3 prokMSA_id:67343 Benzoapyrene-degrading BPC7 prokMSA_id:73293 Alcaligenes sp. isolate ON5 prokMSA_id:78362 Achromobacter sp. LMG 6003 prokMSA_id:90397 Alcaligenes sp. PCNB-2 AY283260 2.28.2.8.4.7984 OTU 1 seq prokMSA_id:26755 beta clone BIfciii38 2.28.2.8.4.7992 OTU 16 seqs prokMSA_id:6878 Alcaligenes sp. str. 159 prokMSA_id:6893 Bordetella sp. str. KP22 prokMSA_id:20845 Achromobacter xylosoxidans subsp. xylosoxidans prokMSA_id:21204 Achromobacter xylosoxidans subsp. xylosoxidans strain A19 prokMSA_id:26123 Arsenite-oxidizing 'Alcaligenes fecalis HLE' prokMSA_id:32178 Arsenite-oxidizing BEN-4 prokMSA_id:33221 clone GL182.6 prokMSA_id:40974 Blackwater bioreactor BW6 prokMSA_id:42554 Achromobacter xylosoxidans strain AU1011 prokMSA_id:55338 Achromobacter xylosoxidans prokMSA_id:77844 Alcaligenes xylosoxidans strain E prokMSA_id:78111 Alcaligenes xylosoxidans strain H prokMSA_id:78128 Alcaligenes xylosoxidans strain A2 prokMSA_id:78208 Achromobacter sp. LMG 5911 prokMSA_id:83269 Alcaligenes faecalis isolate 6818m-E prokMSA_id:84201 Alcaligenes faecalis isolate 5659-H 2.28.2.8.4.7998 OTU 2 seqs prokMSA_id:6876 symbiont of Crithidia sp prokMSA_id:71865 Kinetoplastibacterium crithidii complete L29303 2.28.2.8.4.8016 OTU 1 seq prokMSA_id:27017 Crater Lake CL0-83 2.28.2.8.4.8024 OTU 1 seq prokMSA_id:6880 clone WsCH66 2.28.2.8.4.8023 OTU 1 seq prokMSA_id:49039 Green Bay ferromanganous micronodule MND1 2.28.2.8.4.8062 OTU 1 seq prokMSA_id:22985 Brackiella oedipodis strain LMG 19451 R8846 2.28.2.8.4.8063 OTU 1 seq prokMSA_id:6892 Alcaligenes D2 str. D2 2.28.2.8.4.8094 OTU 1 seq prokMSA_id:56470 Alcaligenes sp. VKM B-2263 2.28.2.9 ACIDOVORAX_GROUP 613 seqs 2.28.2.9.2 TMN.THERMOSULFATUS_SUBGROUP 3 seqs 2.28.2.9.2.7773 OTU 3 seqs prokMSA_id:20114 Thiomonas sp. Ynys1 AF387302 prokMSA_id:82126 Thiomonas sp. B2 isolate B2 prokMSA_id:82391 Thiomonas sp. B3 isolate B3 AJ549220 2.28.2.9.4 ACIDOVORAX_SUBGROUP 441 seqs 2.28.2.9.4.1 COM.TERRIGENA_SUBGROUP 63 seqs 2.28.2.9.4.1.7660 OTU 10 seqs prokMSA_id:18248 Comamonas denitrificans strain 110 prokMSA_id:20196 beta clone:OS1L-11 AB076868 prokMSA_id:22960 beta clone:OS1L-10 prokMSA_id:23191 Comamonas denitrificans strain 123 prokMSA_id:35749 beta clone:OS1L-16 AB076869 prokMSA_id:40166 Comamonas denitrificans strain 2.99g prokMSA_id:42211 beta clone:OS1L-7 prokMSA_id:58512 clone:pHAuB-Q5 AB072708 prokMSA_id:73055 Comamonas denitrificans strain P17 prokMSA_id:74723 Comamonas denitrificans strain 5.38g 2.28.2.9.4.1.7695 OTU 8 seqs prokMSA_id:6914 str. rM2 prokMSA_id:6915 str. rM3 prokMSA_id:6917 str. rM7 prokMSA_id:6918 str. rM11 prokMSA_id:6919 str. rM13 prokMSA_id:6920 str. rA1 prokMSA_id:6921 str. rA3 prokMSA_id:26116 clone ICBTF8 AF390915 2.28.2.9.4.1.7712 OTU 4 seqs prokMSA_id:6924 Comamonas D22 str. D22 prokMSA_id:36914 Comamonas sp. clone KL-11-1-9 AF408327 prokMSA_id:73664 Comamonas terrigena strain LMG 2370T AJ430344 prokMSA_id:89264 Comamonas terrigena isolate TK17 AJ550274 2.28.2.9.4.1.7713 OTU 1 seq prokMSA_id:6925 Comamonas 12022 str. 12022 2.28.2.9.4.1.7718 OTU 3 seqs prokMSA_id:64300 Lampropedia hyalina prokMSA_id:84310 Lampropedia hyalina prokMSA_id:96749 Lampropedia hyalina complete strain:IAM 14890 AB089485 2.28.2.9.4.1.7754 OTU 1 seq prokMSA_id:21007 beta clone BIfdi44 2.28.2.9.4.1.7756 OTU 1 seq prokMSA_id:6938 Brachymonas denitrificans str. AS-P1 JCM 9216 2.28.2.9.4.1.7769 OTU 2 seqs prokMSA_id:6932 str. rA6 prokMSA_id:6933 str. rA7 2.28.2.9.4.1.7791 OTU 1 seq prokMSA_id:34261 clone BIxi1 2.28.2.9.4.1.7834 OTU 5 seqs prokMSA_id:6928 Comamonas terrigena str. IMI 359870 prokMSA_id:6936 Comamonas terrigena IAM 12052 prokMSA_id:17652 Comamonas terrigena strain DSM 7099 prokMSA_id:66690 Comamonas terrigena strain LMG 1249 prokMSA_id:66691 Comamonas terrigena strain LMG 1253T 2.28.2.9.4.1.7869 OTU 1 seq prokMSA_id:39805 TM7 phylum sp. oral clone EW055 2.28.2.9.4.1.7894 OTU 1 seq prokMSA_id:18497 Comamonas sp. PJ913 2.28.2.9.4.1.7971 OTU 1 seq prokMSA_id:59346 clone HP1B33 2.28.2.9.4.1.7999 OTU 2 seqs prokMSA_id:6916 str. rM6 prokMSA_id:37659 BHA17 AF090553 2.28.2.9.4.1.8033 OTU 10 seqs prokMSA_id:6912 Comamonas testosteroni str. RH 1104 ATCC 11996 prokMSA_id:6926 Comamonas testosteroni str. MBIC3840 prokMSA_id:6927 Comamonas testosteroni str. MBIC3841 prokMSA_id:23431 Comamonas testosteroni prokMSA_id:29690 Comamonas sp. clone KL-27-1-15 prokMSA_id:36587 and method detecting Ps. Alcaligenes KB2 strain by using in prokMSA_id:64241 Comamonas testosteroni isolate Q10 prokMSA_id:69635 Comamonas sp. AV1A prokMSA_id:71738 Comamonas testosteroni WDL7 prokMSA_id:84537 Comamonas testosteroni strain NCIMB 10643 2.28.2.9.4.1.8040 OTU 1 seq prokMSA_id:72347 sp. oral clone BE109 2.28.2.9.4.1.8106 OTU 1 seq prokMSA_id:85602 Acidovorax sp. 98-63833 2.28.2.9.4.1.8112 OTU 5 seqs prokMSA_id:17736 Comamonas sp. PJ111 prokMSA_id:32915 Comamonas testosteroni strain SMCC B329 prokMSA_id:62423 beta clone FTL2 prokMSA_id:66754 Comamonas sp. SMCC B0630 prokMSA_id:71872 Comamonas testosteroni strain SMCC B0589 2.28.2.9.4.1.8119 OTU 1 seq prokMSA_id:33606 a2b013 2.28.2.9.4.1.8125 OTU 2 seqs prokMSA_id:23049 NoosaAW70 prokMSA_id:26921 NoosaAW33 2.28.2.9.4.1.8155 OTU 1 seq prokMSA_id:59570 TM7 phylum sp. oral clone EW086 2.28.2.9.4.1.8162 OTU 1 seq prokMSA_id:30714 Comamonas sp. PJ712 2.28.2.9.4.2 HGP.FLAVA_SUBGROUP 2 seqs 2.28.2.9.4.2.7749 OTU 1 seq prokMSA_id:76529 Hydrogenophaga sp. ATCC BAA-306 2.28.2.9.4.2.7905 OTU 1 seq prokMSA_id:25910 clone GOBB3-CL120 2.28.2.9.4.3 HGP.PALLERONII_SUBGROUP 22 seqs 2.28.2.9.4.3.7757 OTU 2 seqs prokMSA_id:51698 beta OM180 U70707 prokMSA_id:82776 Antarctic R-8890 strain R-8890 2.28.2.9.4.3.7814 OTU 1 seq prokMSA_id:6953 Hydrogenophaga DSM 5680 str. S1 2.28.2.9.4.3.7854 OTU 3 seqs prokMSA_id:6950 str. rJ9 prokMSA_id:6951 str. rM14 prokMSA_id:7024 str. rA2 2.28.2.9.4.3.7937 OTU 2 seqs prokMSA_id:6952 Pseudomonas spinosa ATCC 14606 prokMSA_id:77847 Pseudomonas spinosa 2.28.2.9.4.3.7942 OTU 1 seq prokMSA_id:41692 beta clone SM1E01 2.28.2.9.4.3.7988 OTU 1 seq prokMSA_id:56021 Gram negative B3P-1 2.28.2.9.4.3.8105 OTU 12 seqs prokMSA_id:6946 Hydrogenophaga taeniospiralis ATCC 49743 prokMSA_id:18413 beta clone SM1E11 prokMSA_id:36603 beta clone Spb54 prokMSA_id:37507 beta clone:TSL-2-9 AB076882 prokMSA_id:45634 beta clone Spb266 prokMSA_id:51945 beta clone Spb223 prokMSA_id:55821 clone KRA30+06T AY081978 prokMSA_id:81562 clone KD1-44 prokMSA_id:84317 Antarctic R-9284 strain R-9284 prokMSA_id:85508 clone 96 prokMSA_id:88585 Hydrogenophaga sp. clone B-10 AF523058 prokMSA_id:94008 beta- clone Gitt-GS-98 AJ582189 2.28.2.9.4.4 STR.T41_SUBGROUP 1 seq 2.28.2.9.4.4.8006 OTU 1 seq prokMSA_id:6969 clone T96 2.28.2.9.4.5 AQSP.GRACILE 1 seq 2.28.2.9.4.5.8027 OTU 1 seq prokMSA_id:6974 Aquaspirillum gracile str. D4 ATCC 19624 2.28.2.9.4.6 STR.BERLIN7_SUBGROUP 1 seq 2.28.2.9.4.6.8028 OTU 1 seq prokMSA_id:6975 unnamed organism 2.28.2.9.4.8 RHF.FERMENTANS_SUBGROUP 108 seqs 2.28.2.9.4.8.7662 OTU 1 seq prokMSA_id:62979 Aquaspirillum sp. clone T5-1 rrn 2.28.2.9.4.8.7704 OTU 1 seq prokMSA_id:72635 beta clone PRD01b009B 2.28.2.9.4.8.7705 OTU 1 seq prokMSA_id:81902 clone KD4-7 2.28.2.9.4.8.7725 OTU 1 seq prokMSA_id:82574 beta clone TLM04/TLMdgge03 2.28.2.9.4.8.7746 OTU 1 seq prokMSA_id:70503 FukuN55 2.28.2.9.4.8.7775 OTU 1 seq prokMSA_id:6999 str. D8 2.28.2.9.4.8.7786 OTU 1 seq prokMSA_id:7005 Polaromonas vacuolata str. 34-P 2.28.2.9.4.8.7801 OTU 1 seq prokMSA_id:84443 beta clone TLM05/TLMdgge10 2.28.2.9.4.8.7822 OTU 16 seqs prokMSA_id:7006 str. from Lake Gossenkoellesee prokMSA_id:18901 clone RB13C13 prokMSA_id:51248 clone RA13C10 prokMSA_id:76891 Coccomonas naphthalovorans prokMSA_id:81748 clone KD4-57 prokMSA_id:82777 clone 3 prokMSA_id:82904 clone 34 prokMSA_id:83234 clone 124 prokMSA_id:83874 clone 95 prokMSA_id:84106 clone 44 prokMSA_id:84163 clone 61 prokMSA_id:84478 clone 38 prokMSA_id:85176 clone 59 prokMSA_id:85808 clone 72 prokMSA_id:86525 clone 75 prokMSA_id:86562 clone 27 2.28.2.9.4.8.7821 OTU 1 seq prokMSA_id:23857 Banisveld landfill BVB72 2.28.2.9.4.8.7829 OTU 11 seqs prokMSA_id:7033 Xylophilus ampelinus ATCC 33914 prokMSA_id:22998 Xylophilus ampelinus strain DSM 7250 prokMSA_id:51397 Beta A0637 prokMSA_id:53922 beta clone 16 prokMSA_id:59726 Variovorax sp. WDL1 prokMSA_id:71257 beta clone PRD01a007B prokMSA_id:72353 beta clone PRD01b001B prokMSA_id:72406 beta clone PRD01b002B prokMSA_id:74457 beta clone PRD01b004B prokMSA_id:78615 Comamonadaceae clone EarCan103 AY189630 prokMSA_id:81851 Variovorax paradoxus clone 1-95 AY169432 2.28.2.9.4.8.7847 OTU 1 seq prokMSA_id:81130 clone KD2-104 2.28.2.9.4.8.7920 OTU 2 seqs prokMSA_id:24121 beta clone Spb98 prokMSA_id:73322 clone 25/4-32 AJ007642 2.28.2.9.4.8.7928 OTU 1 seq prokMSA_id:82193 clone KD5-43 2.28.2.9.4.8.7941 OTU 1 seq prokMSA_id:46854 clone RB9C10 2.28.2.9.4.8.7986 OTU 11 seqs prokMSA_id:39868 clone RB7C2 prokMSA_id:44459 clone RB13C6 prokMSA_id:45498 clone RB13C10 prokMSA_id:50642 clone RB9C6 prokMSA_id:80799 Arctic sea ice ARK10281 prokMSA_id:81368 clone ZZ9C2 prokMSA_id:81427 clone ZZ9C5 prokMSA_id:81879 clone ZZ9C12 prokMSA_id:81934 clone ZZ9C11 prokMSA_id:82365 clone ZZ9C20 prokMSA_id:82413 clone ZZ12C5 2.28.2.9.4.8.8045 OTU 1 seq prokMSA_id:6988 clone T67 2.28.2.9.4.8.8057 OTU 1 seq prokMSA_id:6987 clone T73 2.28.2.9.4.8.8065 OTU 1 seq prokMSA_id:51377 SY6-105 2.28.2.9.4.8.8067 OTU 11 seqs prokMSA_id:62408 beta clone FTL236 prokMSA_id:81090 clone KD5-110 prokMSA_id:81503 clone KD4-83 prokMSA_id:81515 clone KD4-45 prokMSA_id:81758 clone KD2-60 prokMSA_id:82256 clone KD4-65 prokMSA_id:82291 clone KD3-141 prokMSA_id:82377 clone KD1-118 prokMSA_id:82828 clone 161 prokMSA_id:83945 Antarctic R-7724 strain R-7724 prokMSA_id:84889 clone 50 2.28.2.9.4.8.8083 OTU 1 seq prokMSA_id:6994 clone LB3-27 2.28.2.9.4.8.8115 OTU 1 seq prokMSA_id:44278 SY6-67 2.28.2.9.4.8.8117 OTU 1 seq prokMSA_id:36075 beta clone 08 2.28.2.9.4.8.8139 OTU 26 seqs prokMSA_id:6904 Comamonas acidovorans IAM 12409 prokMSA_id:6905 Comamonas MC1 str. MC1 prokMSA_id:7073 Acidovorax anthurii str. CFBP 3232. AJ007013 prokMSA_id:18730 beta clone Elb263 prokMSA_id:20305 beta clone Elb154 prokMSA_id:22797 Variovorax sp. clone KL-93-1-6 prokMSA_id:29558 rape rhizosphere wr0041 prokMSA_id:33410 beta clone BIvii32 AJ318196 prokMSA_id:33769 clone RB7C8 AF407386 prokMSA_id:48031 Rape rhizosphere tsb068 prokMSA_id:62983 Variovorax sp. clone T6-5 rrn prokMSA_id:79891 clone KD4-2 AY188310 prokMSA_id:80703 clone ARKMP-77 prokMSA_id:80790 clone ARKMP-16 AF468326 prokMSA_id:81482 clone KD7-112 AY218703 prokMSA_id:81834 clone KD1-133 prokMSA_id:81969 clone KD1-19 AY218556 prokMSA_id:88367 Comamonadaceae clone G-5 AF523029 prokMSA_id:88852 Glacier FJS17 AY315175 prokMSA_id:89052 Glacier FXS1 AY315177 prokMSA_id:89506 Comamonadaceae clone G-2 AF523052 prokMSA_id:89522 Glacier FJS31 AY315178 prokMSA_id:89727 Comamonadaceae clone B-21 AF523019 prokMSA_id:89861 Glacier FXS33 AY315176 prokMSA_id:89980 Glacier FJI50 AY315174 prokMSA_id:90133 Comamonadaceae clone D-7 AF523015 2.28.2.9.4.8.8138 OTU 13 seqs prokMSA_id:6995 Aquaspirillum delicatum str. 146 LMG 4328 prokMSA_id:6997 Pseudomonas lanceolata ATCC 14669 prokMSA_id:21463 clone TAF-A31 AY038710 prokMSA_id:25053 clone FBR-E AJ319679 prokMSA_id:25979 clone GOUTB19 prokMSA_id:43083 clone HTA10 prokMSA_id:50976 oxSCC-4 AJ387862 prokMSA_id:56377 beta clone ccs221 prokMSA_id:59902 beta clone ccslm256 prokMSA_id:62982 Aquaspirillum sp. clone T5-4 rrn prokMSA_id:62986 Aquaspirillum sp. clone T8-4 rrn prokMSA_id:80304 clone ARKMP-51 AF468333 prokMSA_id:88413 Comamonadaceae isolate ODP1176A22X_18_B AY191346 2.28.2.9.4.10 VRV.PARADOXUS_SUBGROUP 26 seqs 2.28.2.9.4.10.7689 OTU 1 seq prokMSA_id:41200 Beta A0837 2.28.2.9.4.10.7745 OTU 1 seq prokMSA_id:58864 UNSW5 2.28.2.9.4.10.7856 OTU 7 seqs prokMSA_id:35360 Variovorax paradoxus strain DSM 66 prokMSA_id:50112 Variovorax sp. 34 prokMSA_id:62971 Variovorax sp. clone 81-4 rrn prokMSA_id:62974 Variovorax sp. clone 84-23 rrn prokMSA_id:62976 Variovorax sp. clone 84-3 rrn prokMSA_id:78833 Variovorax sp. isolate 4f48 prokMSA_id:82437 Variovorax paradoxus clone 1-94 2.28.2.9.4.10.7882 OTU 1 seq prokMSA_id:56155 Variovorax sp. clone 83-5 rrn 2.28.2.9.4.10.7964 OTU 1 seq prokMSA_id:86368 clone 76 2.28.2.9.4.10.7978 OTU 15 seqs prokMSA_id:7022 Variovorax paradoxus IAM 12373 prokMSA_id:7028 Variovorax paradoxus IAM 12373 prokMSA_id:7029 Variovorax WFF52 str. WFF52 prokMSA_id:29134 Variovorax sp. HAB-24 prokMSA_id:31737 Variovorax sp. HAB-21 prokMSA_id:41243 Variovorax sp. HAB-27 prokMSA_id:43527 Variovorax sp. HAB-30 prokMSA_id:47559 Variovorax sp. HAB-29 prokMSA_id:49651 Variovorax sp. HAB-23 prokMSA_id:58871 Beta '#33 spreading' prokMSA_id:60338 clone Nap240 prokMSA_id:71064 Beta '#33 clear' prokMSA_id:74636 WD2115 clone WD2115 prokMSA_id:78024 Variovorax sp. TUT1027 prokMSA_id:86262 Variovorax sp. MN 45.2b.1 strain MN 45.2b.1 2.28.2.9.4.12 XP.AMPELINUS_SUBGROUP 6 seqs 2.28.2.9.4.12.7719 OTU 1 seq prokMSA_id:81611 clone KD2-46 2.28.2.9.4.12.7739 OTU 1 seq prokMSA_id:45606 BA128 2.28.2.9.4.12.7849 OTU 1 seq prokMSA_id:7034 clone T15 2.28.2.9.4.12.7850 OTU 1 seq prokMSA_id:7035 clone T65 2.28.2.9.4.12.7851 OTU 1 seq prokMSA_id:7036 clone T59 2.28.2.9.4.12.8025 OTU 1 seq prokMSA_id:38267 WD291 clone WD291 2.28.2.9.4.13 AV.AVENAE_SUBGROUP 182 seqs 2.28.2.9.4.13.7735 OTU 1 seq prokMSA_id:78738 Acidovorax sp 2.28.2.9.4.13.7888 OTU 119 seqs prokMSA_id:6941 Hydrogenophaga flava CCUG 1658 prokMSA_id:6942 Hydrogenophaga flava DSM 619 prokMSA_id:6943 Hydrogenophaga pseudoflava str. GA3 ATCC 33668 prokMSA_id:6945 clone SJA-155 prokMSA_id:6949 Hydrogenophaga palleronii str. S1 DSM 63 . AF019073 prokMSA_id:6954 str. T25. X95836 prokMSA_id:6955 str. mz1L prokMSA_id:6956 unnamed organism prokMSA_id:6957 clone T25. Z93971 prokMSA_id:6958 clone T19 prokMSA_id:6962 clone 19523 prokMSA_id:6965 str. T41. X95838 prokMSA_id:6967 clone T71 prokMSA_id:6968 clone T83 prokMSA_id:6970 clone T41. Z93973 prokMSA_id:6971 clone T70 prokMSA_id:6972 clone T47 prokMSA_id:6979 Rhodoferax fermentans str. FR3 prokMSA_id:6980 Rhodoferax fermentans str. FR2 prokMSA_id:7037 Ramlibacter tataouinensis TTB310 AF144383 prokMSA_id:7046 unnamed organism. AF035049 prokMSA_id:7056 Acidovorax temperans CCUG 11779 prokMSA_id:7057 str. BrG1 prokMSA_id:7058 str. BrG4 prokMSA_id:19472 beta clone:TSL-2-3 AB076881 prokMSA_id:20007 beta clone:OS1L-1 AB076860 prokMSA_id:21895 Arsenite-oxidizing NT-14 prokMSA_id:22529 Acidovorax sp. KSP2 prokMSA_id:24115 beta clone:OS1L-19 AB076871 prokMSA_id:24701 beta clone:TSL-1-7 AB076879 prokMSA_id:25859 beta clone:OS1L-18 AB076870 prokMSA_id:27570 Beta OS-19 prokMSA_id:28287 beta clone:OS1L-20 AB076872 prokMSA_id:30654 Hydrogenophaga flava strain DSM 619 prokMSA_id:31108 sludge H21 prokMSA_id:31610 beta clone 36-111 AF351224 prokMSA_id:32764 beta clone:TSL-2-2 AB076880 prokMSA_id:34909 beta clone Spb249 prokMSA_id:35165 GKS2-122 prokMSA_id:39244 Beta K601 strain K601 prokMSA_id:39467 Beta OS-9 prokMSA_id:40028 Arsenite-oxidizing NT-6 prokMSA_id:40752 Ramlibacter henchirensis AF439400 prokMSA_id:41470 Comamonas testosteroni SB2 AY050494 prokMSA_id:41585 beta clone:TSL-1-1 AB076876 prokMSA_id:42753 Arsenite-oxidizing NT-5 AY027498 prokMSA_id:45318 beta clone:OS1L-6 AB076864 prokMSA_id:47512 Hydrogenophaga pseudoflava strain DSM 1034 prokMSA_id:50786 epsilon 1016 prokMSA_id:51135 Acidovorax sp. KSP1 prokMSA_id:52575 WD2100 clone WD2100 AJ292623 prokMSA_id:55345 Acidovorax sp. 'smarlab 133815' prokMSA_id:55628 clone:R6-01 prokMSA_id:56031 beta clone DC11-51-0 prokMSA_id:58604 Comamonas sp. SFCD1 AY134850 prokMSA_id:59344 clone HP1B35 AF502223 prokMSA_id:61807 beta clone CLs95 prokMSA_id:61820 beta clone CLi96 AF529344 prokMSA_id:61826 beta clone CLi60 prokMSA_id:61833 beta clone CLi28 prokMSA_id:62392 beta clone FTLM27 prokMSA_id:62968 clone LPB10 AF527581 prokMSA_id:65472 clone a13103 AY102310 prokMSA_id:66109 beta clone:KB17 AB074944 prokMSA_id:66230 Acidovorax avenae isolate C1 AF508114 prokMSA_id:66684 Comamonas terrigena strain LMG 5323 AJ430348 prokMSA_id:66952 Acidovorax sp. C1 strain C1 AJ457191 prokMSA_id:68619 clone KRA30+15 prokMSA_id:69400 Comamonadaceae BP-1b prokMSA_id:70139 Comamonadaceae PIV-3D strain PIV-3D prokMSA_id:71078 1484 bp prokMSA_id:72267 beta clone PRD01b008B prokMSA_id:72607 beta clone PRD01a008B AF289156 prokMSA_id:73303 clone GOUTB7 prokMSA_id:73849 Comamonadaceae BP-1 prokMSA_id:73890 Bromate-reducing B7 prokMSA_id:76513 beta clone Gitt-KF-42 AJ532685 prokMSA_id:76907 earthworm intestine clone wi89 AY154496 prokMSA_id:81589 clone ZZ14C11 prokMSA_id:81772 clone KD8-125 AY218684 prokMSA_id:82958 Acidovorax sp. clone 11.2-15 prokMSA_id:83818 Acidovorax sp. clone 4.7-1 prokMSA_id:84159 Acidovorax sp. clone 4.3-1 prokMSA_id:86274 Acidovorax sp. clone 4.2-9 prokMSA_id:88128 Hydrogenophaga sp. clone D-20 AF523050 prokMSA_id:88170 DSSD38 AY328737 prokMSA_id:88200 Hydrogenophaga sp. clone D-17 AF523048 prokMSA_id:88425 Hydrogenophaga sp. clone B-3 AF523000 prokMSA_id:88667 DSSD96 AY328793 prokMSA_id:88790 DSSD22 AY328721 prokMSA_id:88831 Comamonadaceae clone B-5 AF523023 prokMSA_id:88878 Hydrogenophaga sp. clone B-20 AF523021 prokMSA_id:88897 DSSD17 AY328716 prokMSA_id:89022 DSSD28 AY328727 prokMSA_id:89066 DSSD37 AY328736 prokMSA_id:89279 DSSD73 AY328771 prokMSA_id:89333 Hylemonella sp. WQH1 isolate WQH1 AJ565430 prokMSA_id:89424 DSSD24 AY328723 prokMSA_id:89461 DSSD85 AY328782 prokMSA_id:89504 Hydrogenophaga sp. clone H-12 AF523009 prokMSA_id:89666 DSSD35 AY328734 prokMSA_id:89678 DSSD89 AY328786 prokMSA_id:89752 DSSD93 AY328790 prokMSA_id:89840 DSSD94 AY328791 prokMSA_id:89970 Hylemonella gracilis isolate WQT2 AJ565424 prokMSA_id:90034 DSSD83 AY328780 prokMSA_id:90056 DSSD77 AY328775 prokMSA_id:90139 Hydrogenophaga sp. clone B-11 AF523054 prokMSA_id:90164 DSSD99 AY328796 prokMSA_id:90243 DSSD36 AY328735 prokMSA_id:90313 DSSD14 AY328713 prokMSA_id:90350 DSSD2 AY328702 prokMSA_id:90602 Hydrogenophaga sp. clone B-6 AF523037 prokMSA_id:90625 DSSD43 AY328741 prokMSA_id:90735 DSSD98 AY328795 prokMSA_id:90742 DSSD79 AY328776 prokMSA_id:92030 Acidovorax sp. 040703/8067L AY360350 prokMSA_id:95932 clone COB P5-8 AY160868 prokMSA_id:97627 Acidovorax sp. AHL 5 AY379977 2.28.2.9.4.13.7904 OTU 1 seq prokMSA_id:76621 beta clone Gitt-KF-21 2.28.2.9.4.13.7919 OTU 1 seq prokMSA_id:7061 str. rM4 2.28.2.9.4.13.7949 OTU 1 seq prokMSA_id:66240 Variovorax paradoxus isolate TG27 2.28.2.9.4.13.7982 OTU 1 seq prokMSA_id:80070 clone KD1-99 2.28.2.9.4.13.7987 OTU 3 seqs prokMSA_id:7062 str. rM9 prokMSA_id:7063 Comamonas sp. str. MBIC3885 prokMSA_id:28959 Acidovorax sp. OS-6 2.28.2.9.4.13.7995 OTU 1 seq prokMSA_id:78916 Ottowia thiooxidans strain K11T 2.28.2.9.4.13.8003 OTU 1 seq prokMSA_id:17198 clone AF1-8 2.28.2.9.4.13.8009 OTU 1 seq prokMSA_id:64871 clone 81 2.28.2.9.4.13.8012 OTU 5 seqs prokMSA_id:7052 Acidovorax konjaci str. K2 ATCC 33996 prokMSA_id:7053 Acidovorax konjaci str. K2 ICMP 7733 prokMSA_id:7064 Acidovorax IMI 357678 str. IMI 357678 prokMSA_id:52263 Acidovorax konjaci strain DSM 7481 prokMSA_id:64550 Acidovorax valerianelle strain CFBP 4730 2.28.2.9.4.13.8018 OTU 8 seqs prokMSA_id:7074 Acidovorax delafieldii ATCC 17505 prokMSA_id:7076 Acidovorax 7078 str. 7078 prokMSA_id:24480 0803 filamentous strain Ben04B prokMSA_id:24938 0803 filamentous strain Ben05B prokMSA_id:37472 Acidovorax delafieldii strain DSM 50263 prokMSA_id:42288 Acidovorax sp. BSB421 prokMSA_id:45559 SJA-23 clone SJA-23 prokMSA_id:84438 clone 151 2.28.2.9.4.13.8020 OTU 1 seq prokMSA_id:74685 Acidovorax wohlfahrtii strain B2/74 2.28.2.9.4.13.8021 OTU 8 seqs prokMSA_id:7038 Acidovorax facilis CCUG 2113 prokMSA_id:7077 str. P51 prokMSA_id:19277 Acidovorax sp. UFZ-B530 prokMSA_id:19406 rape rhizosphere wr0020 prokMSA_id:24374 Acidovorax facilis strain DSM 649 prokMSA_id:25119 Acidovorax sp. UFZ-B517 prokMSA_id:49770 clone GOUTB16 prokMSA_id:76895 beta clone S15A-MN11 2.28.2.9.4.13.8022 OTU 6 seqs prokMSA_id:7047 Acidovorax avenae subsp. cattleyae NCPPB 961 prokMSA_id:7054 Acidovorax avenae subsp. citrulli ATCC 29625 prokMSA_id:7067 Acidovorax avenae subsp. avenae ATCC 19860 prokMSA_id:7070 Acidovorax avenae subsp. cattleyae ICMP 2826 prokMSA_id:7071 Acidovorax avenae subsp. avenae ICMP 3183 prokMSA_id:7072 Acidovorax avenae subsp. citrulli ICMP 7500 2.28.2.9.4.13.8031 OTU 1 seq prokMSA_id:7068 str. rJ10 2.28.2.9.4.13.8046 OTU 5 seqs prokMSA_id:7043 Acidovorax defluvii str. BSB411 prokMSA_id:7044 Acidovorax G7A1 str. G7A1 prokMSA_id:7045 Acidovorax G8B1 str. G8B1 prokMSA_id:81755 clone ZZ15C1 prokMSA_id:82409 clone ZZ15C2 2.28.2.9.4.13.8049 OTU 1 seq prokMSA_id:7040 clone T22 2.28.2.9.4.13.8051 OTU 2 seqs prokMSA_id:7041 clone T36 prokMSA_id:7106 str. T36. X97598 2.28.2.9.4.13.8071 OTU 1 seq prokMSA_id:33590 Banisveld landfill BVB58 2.28.2.9.4.13.8076 OTU 10 seqs prokMSA_id:71849 clone 19512 prokMSA_id:73233 clone 19510 AF097787 prokMSA_id:75555 beta isolate WB-56 AY157103 prokMSA_id:76075 beta isolate HS-41 AY157127 prokMSA_id:76221 beta isolate PG-40 AY157141 prokMSA_id:76424 beta isolate WD-41 AY157077 prokMSA_id:76947 beta isolate WD-40 AY157080 prokMSA_id:77013 beta isolate WB-40 AY157095 prokMSA_id:77028 beta isolate WB-68 AY157101 prokMSA_id:77251 beta isolate WB-41 AY157086 2.28.2.9.4.13.8079 OTU 2 seqs prokMSA_id:83933 Acidovorax sp. isolate EfNe2 prokMSA_id:83935 Acidovorax sp. isolate EfNe1 2.28.2.9.4.13.8088 OTU 1 seq prokMSA_id:7060 str. rJ12 2.28.2.9.4.13.8152 OTU 1 seq prokMSA_id:83899 Acidovorax sp. clone Ol2-2 2.28.2.9.4.14 AQSP.PSYCHROPHILUM_SUBGROUP 29 seqs 2.28.2.9.4.14.7807 OTU 20 seqs prokMSA_id:7088 Aquaspirillum psychrophilum str. CA 1 LMG 5408 prokMSA_id:7090 str. rJ1 prokMSA_id:7091 str. rJ16 prokMSA_id:7092 str. rM5 prokMSA_id:7093 str. rA10 prokMSA_id:7096 Aquaspirillum metamorphum LMG 4339 prokMSA_id:7097 clone T33 prokMSA_id:7098 Aquaspirillum metamorphum DSM 1837 prokMSA_id:16841 clone GIF15 prokMSA_id:34473 clone GIF2 prokMSA_id:35415 Beta NOS3 prokMSA_id:35695 clone d034 prokMSA_id:44893 Beta NOS8 prokMSA_id:45919 clone GIF5 prokMSA_id:47038 clone GOUTA11 prokMSA_id:52690 clone d078 prokMSA_id:58579 Comamonadaceae PIV-8-1 strain PIV-8-1 prokMSA_id:70987 Comamonadaceae PIV-8-2 strain PIV-8-2 prokMSA_id:79199 clone KD8-10 prokMSA_id:81909 clone KD1-96 2.28.2.9.4.14.7863 OTU 3 seqs prokMSA_id:7101 Aquaspirillum sinuosum LMG 4393 prokMSA_id:66300 Aquaspirillum anulus prokMSA_id:66303 Aquaspirillum giesbergeri 2.28.2.9.4.14.7879 OTU 1 seq prokMSA_id:7094 clone T69 2.28.2.9.4.14.7916 OTU 1 seq prokMSA_id:80589 clone KD1-23 2.28.2.9.4.14.7946 OTU 1 seq prokMSA_id:81545 clone KD2-15 2.28.2.9.4.14.8043 OTU 1 seq prokMSA_id:37583 clone d156 2.28.2.9.4.14.8098 OTU 1 seq prokMSA_id:35320 beta clone:OS1L-5 2.28.2.9.4.14.8147 OTU 1 seq prokMSA_id:7089 Comamonas sp. str. R7 2.28.2.9.5 LEPTOTHRIX_SUBGROUP 168 seqs 2.28.2.9.5.1 RUB.GELATINOSUS_SUBGROUP 26 seqs 2.28.2.9.5.1.7686 OTU 1 seq prokMSA_id:29302 beta clone Elb252 2.28.2.9.5.1.7812 OTU 1 seq prokMSA_id:33614 clone LO13.11 2.28.2.9.5.1.7827 OTU 1 seq prokMSA_id:75493 clone HC-23 2.28.2.9.5.1.7872 OTU 4 seqs prokMSA_id:7120 clone AI301. U45674 prokMSA_id:7172 clone AI303. U45675 prokMSA_id:22856 beta clone Spb03 prokMSA_id:65622 soil clone S1200 AF507778 2.28.2.9.5.1.7871 OTU 1 seq prokMSA_id:26649 beta clone Elb271 2.28.2.9.5.1.7908 OTU 1 seq prokMSA_id:51718 beta clone Elb197 2.28.2.9.5.1.7990 OTU 1 seq prokMSA_id:51665 Beta A0640 2.28.2.9.5.1.8002 OTU 4 seqs prokMSA_id:7115 Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011 prokMSA_id:7118 Rubrivivax gelatinosus str. IL144 prokMSA_id:7122 Rubrivivax gelatinosus str. A3 prokMSA_id:68337 Rubrivivax gelatinosus strain OK3O3 2.28.2.9.5.1.8038 OTU 1 seq prokMSA_id:30949 Crater Lake CL500-36 2.28.2.9.5.1.8055 OTU 1 seq prokMSA_id:21288 clone TRS7 2.28.2.9.5.1.8074 OTU 1 seq prokMSA_id:73442 synthetic wastewater tmbr15-22 complete 2.28.2.9.5.1.8082 OTU 1 seq prokMSA_id:81087 clone KD5-22 2.28.2.9.5.1.8087 OTU 1 seq prokMSA_id:7110 clone T10 2.28.2.9.5.1.8091 OTU 1 seq prokMSA_id:21411 beta clone Elb136 2.28.2.9.5.1.8102 OTU 1 seq prokMSA_id:7124 str. DhA-73 2.28.2.9.5.1.8100 OTU 1 seq prokMSA_id:7123 Alcaligenes latus IAM 12599 2.28.2.9.5.1.8113 OTU 2 seqs prokMSA_id:17679 sludge A26b prokMSA_id:48162 sludge A2 2.28.2.9.5.1.8121 OTU 1 seq prokMSA_id:38002 sludge A15 2.28.2.9.5.1.8140 OTU 1 seq prokMSA_id:73389 Leptothrix sp. oral clone AW043 2.28.2.9.5.2 LPTX.MOBILIS_SUBGROUP 27 seqs 2.28.2.9.5.2.7785 OTU 1 seq prokMSA_id:51243 beta OM156 2.28.2.9.5.2.7884 OTU 1 seq prokMSA_id:40205 beta clone Elb37 2.28.2.9.5.2.7917 OTU 3 seqs prokMSA_id:7133 str. DhA-71 prokMSA_id:79664 Schlegelia thermodepolymerans prokMSA_id:80077 Caenibacterium thermophilum strain N2-680T 2.28.2.9.5.2.7944 OTU 5 seqs prokMSA_id:26793 Limnobacter thiooxidans strain CS-K2 AJ289885 prokMSA_id:27619 rape rhizosphere wr0017 prokMSA_id:89016 Limnobacter sp. clone I-1 AF523005 prokMSA_id:90229 Drinking water MB16 AY328846 prokMSA_id:90492 Limnobacter sp. clone D-15 AF522999 2.28.2.9.5.2.7961 OTU 1 seq prokMSA_id:41229 isolate HuCC33 2.28.2.9.5.2.8030 OTU 1 seq prokMSA_id:17255 Ralstonia sp. P-4CB2 2.28.2.9.5.2.8047 OTU 13 seqs prokMSA_id:7129 Sphaerotilus IF4 str. IF4. AF072914 prokMSA_id:7130 Sphaerotilus IF5 str. IF5 prokMSA_id:7131 Sphaerotilus IF9 str. IF9 prokMSA_id:7132 Sphaerotilus IF14 str. IF14 prokMSA_id:79648 Sphaerotilus sp. L6 prokMSA_id:79669 Sphaerotilus sp. L12 AB087566 prokMSA_id:79735 Sphaerotilus sp. L19 prokMSA_id:79774 Sphaerotilus sp. L7 AB087564 prokMSA_id:79792 Sphaerotilus sp. L1 AB087560 prokMSA_id:80068 Sphaerotilus sp. L2 prokMSA_id:80513 Sphaerotilus sp. L3 AB087562 prokMSA_id:80525 Sphaerotilus sp. L8 prokMSA_id:80616 Sphaerotilus sp. L13 AB087567 2.28.2.9.5.2.8104 OTU 1 seq prokMSA_id:7126 Leptothrix mobilis str. Feox-1 DSM 10617 2.28.2.9.5.2.8107 OTU 1 seq prokMSA_id:7127 unnamed organism 2.28.2.9.5.3 SPT.NATANS_SUBGROUP 1 seq 2.28.2.9.5.3.8070 OTU 1 seq prokMSA_id:7139 Sphaerotilus natans str. 565 2.28.2.9.5.4 LPTX.DISCOPHORA_SUBGROUP 114 seqs 2.28.2.9.5.4.7738 OTU 2 seqs prokMSA_id:7164 Leptothrix discophora str. SS-1 ATCC 43182 prokMSA_id:7173 Leptothrix discophora str. SS-1 ATCC 43182 2.28.2.9.5.4.7741 OTU 2 seqs prokMSA_id:7170 Leptothrix discophora str. SP-6 ATCC 51168 prokMSA_id:7171 Leptothrix cholodnii str. Mulder 5 CCM 1827 2.28.2.9.5.4.7742 OTU 2 seqs prokMSA_id:20107 beta clone Elb101 AJ421920 prokMSA_id:29425 beta clone Elb123 2.28.2.9.5.4.7790 OTU 1 seq prokMSA_id:61836 beta clone CLi117 2.28.2.9.5.4.7816 OTU 1 seq prokMSA_id:82250 clone KD3-41 2.28.2.9.5.4.7820 OTU 1 seq prokMSA_id:45838 Beta A1004 2.28.2.9.5.4.7855 OTU 1 seq prokMSA_id:7174 clone RB11 2.28.2.9.5.4.7860 OTU 1 seq prokMSA_id:7175 Leptothrix sp. str. HS 2.28.2.9.5.4.7876 OTU 1 seq prokMSA_id:31150 clone AF2.2 2.28.2.9.5.4.7929 OTU 1 seq prokMSA_id:7147 clone VC2.1 Bac29 2.28.2.9.5.4.7943 OTU 1 seq prokMSA_id:7151 Aquabacterium parvum str. B6 2.28.2.9.5.4.7965 OTU 97 seqs prokMSA_id:7109 Ideonella dechloratans CCUG 30898 prokMSA_id:7145 Roseateles depolymerans str. 61A DSM 11813 prokMSA_id:7146 DSM 654. AB021407 prokMSA_id:7148 str. MBIC3293 prokMSA_id:7149 Roseateles depolymerans str. 61B2 DSM 11814 prokMSA_id:7150 Matsuebacter chitosanotabidus prokMSA_id:7154 Aquabacterium commune str. B8 prokMSA_id:7155 str. BrG2 prokMSA_id:7156 Aquabacterium Aqua2 str. Aqua2 prokMSA_id:7157 Roseateles depolymerans str. 61B2 prokMSA_id:7160 str. MC11 prokMSA_id:7161 str. MC12 prokMSA_id:7163 Roseateles depolymerans str. 61B2 DSM 11814 prokMSA_id:7165 Aquabacterium citratiphilum str. B4 prokMSA_id:19409 Beta A1040 AF236008 prokMSA_id:19861 Pseudomonas saccharophila AF368755 prokMSA_id:21295 beta clone pA3178 AF324205 prokMSA_id:24241 mle1-19 AF280853 prokMSA_id:24880 Beta S-N1-18A AB074727 prokMSA_id:25579 beta clone Spb111 prokMSA_id:28560 beta clone SM1G08 AF445700 prokMSA_id:30280 beta clone BIci13 prokMSA_id:34633 beta clone Spb132 prokMSA_id:35403 Leptothrix sp. oral clone AV011a prokMSA_id:37495 Green Bay ferromanganous micronodule MNE12 AF293003 prokMSA_id:37907 Matsuebacter chitosanotabidus prokMSA_id:37911 Matsuebacter sp. 13 prokMSA_id:38900 Ideonella sp. B511 AB049106 prokMSA_id:39488 Ideonella sp. B508-1 AB049105 prokMSA_id:39593 Beta S-N0-9A AB074725 prokMSA_id:40398 Ideonella sp. B513 AB049107 prokMSA_id:40534 Beta A0647 AF236007 prokMSA_id:40687 beta clone Spb298 prokMSA_id:42662 clone p-3415-SwA2 AF371861 prokMSA_id:42874 clone GOUTA14 prokMSA_id:43210 Beta A0618 AF236006 prokMSA_id:43917 sludge A37 AF234753 prokMSA_id:45926 Burkholderia cepacia AF244133 prokMSA_id:48820 beta clone pA42B412 AF324206 prokMSA_id:51521 beta clone Elb59 AJ421916 prokMSA_id:51906 beta clone BIci13b prokMSA_id:55284 beta clone Michigan-11 AJ319543 prokMSA_id:56024 beta clone Thailand-3-QC AJ319572 prokMSA_id:56335 beta clone Michigan-6 prokMSA_id:58127 Ellin321 AF498703 prokMSA_id:61846 beta clone CLi22 prokMSA_id:64751 beta clone Thailand-4-QC AJ319573 prokMSA_id:64752 beta clone Thailand-5-QC prokMSA_id:64756 beta clone Thailand-12-QC AJ319568 prokMSA_id:64758 beta clone Thailand-19-QC AJ319570 prokMSA_id:64759 beta clone Poland-20-QC AJ319566 prokMSA_id:64763 beta clone Poland-10-QC AJ319562 prokMSA_id:64774 beta clone Poland-18 AJ319548 prokMSA_id:64776 beta clone Michigan-8 AJ319547 prokMSA_id:64779 beta clone Michigan-5 AJ319545 prokMSA_id:65415 clone 8 prokMSA_id:65432 clone 15 prokMSA_id:74515 Glacial ice CanDirty12 AF479324 prokMSA_id:74807 WD2102 clone WD2102 AJ292626 prokMSA_id:77923 Beta CTE108 strain CTE108 prokMSA_id:79085 Phenanthrene-degrading 90 AY177371 prokMSA_id:79115 clone csbio160166 AY187391 prokMSA_id:79181 clone csbio160390 AY187348 prokMSA_id:79206 clone csbio160143 AY187389 prokMSA_id:79268 clone csbio160365 AY187349 prokMSA_id:79302 clone KD5-121 prokMSA_id:79334 clone csbio160307 AY187343 prokMSA_id:79354 clone csbio160193 AY187390 prokMSA_id:79460 clone csbio160321 AY187346 prokMSA_id:79492 clone csbio160367 AY187342 prokMSA_id:79724 Leptothrix sp. L10 prokMSA_id:80990 clone ARKMP-82 prokMSA_id:81133 clone ZZ15C9 prokMSA_id:81341 clone ZZ15C11 prokMSA_id:81389 clone KD8-118 prokMSA_id:81741 beta clone ARKMP-94 prokMSA_id:81953 Variovorax paradoxus clone 1-42 AY169418 prokMSA_id:82480 Comamonadaceae MWH55 prokMSA_id:84642 Antarctic R-8875 strain R-8875 AJ440994 prokMSA_id:88640 Aquabacterium sp. clone C-19 AF523020 prokMSA_id:88708 Aquabacterium sp. clone D-24 AF523055 prokMSA_id:88758 DSSD55 AY328753 prokMSA_id:88838 Aquabacterium sp. clone D-5 AF523016 prokMSA_id:89073 Aquabacterium sp. clone I-17 AF522997 prokMSA_id:89113 Aquabacterium sp. clone C-12 AF523027 prokMSA_id:89169 Aquabacterium sp. clone C-20 AF523017 prokMSA_id:89220 Aquabacterium sp. clone J-21 AF522998 prokMSA_id:89328 Aquabacterium sp. clone D-11 AF523024 prokMSA_id:89760 Aquabacterium sp. clone C-11 AF523034 prokMSA_id:90197 Aquabacterium sp. clone C-23 AF523043 prokMSA_id:90347 Beta KNU3 AY299334 prokMSA_id:90433 Aquabacterium sp. clone I-18 AF523025 prokMSA_id:90435 Aquabacterium sp. clone D-2 AF523044 prokMSA_id:90472 Aquabacterium sp. clone C-9 AF523004 prokMSA_id:91495 clone W4-B56 AY345493 prokMSA_id:91986 G23 AY345396 prokMSA_id:96716 clone B35 AY375072 2.28.2.9.5.4.8075 OTU 3 seqs prokMSA_id:19727 beta clone Spb87 AJ422159 prokMSA_id:26468 beta clone Spb293 AJ422175 prokMSA_id:50434 beta clone Spb280 2.28.2.9.6 STR.SBR1074_SUBGROUP 1 seq 2.28.2.9.6.7912 OTU 1 seq prokMSA_id:29208 clone Tc71 2.28.2.10 BURKHOLDERIA_GROUP 245 seqs 2.28.2.10.1 BUR.NORIMBERGENSIS_SUBGROUP 28 seqs 2.28.2.10.1.7934 OTU 28 seqs prokMSA_id:7183 Burkholderia norimbergensis str. R2 DSM 11628 . Y09879 prokMSA_id:7184 Burkholderia IpA-51 str. IpA-51 prokMSA_id:7185 Burkholderia JB1 str. JB1 prokMSA_id:17884 Pandoraea sp. G5056 prokMSA_id:22226 Pandoraea sp. G7835 prokMSA_id:25682 Pandoraea sp. H652 AF247698 prokMSA_id:35338 Pandoraea pulmonicola prokMSA_id:35988 Pandoraea sp. G8107 prokMSA_id:46842 Pandoraea sp. G9278 prokMSA_id:48497 Burkholderia sp. MN 182.2 isolate MN 182.2 prokMSA_id:49796 Pandoraea sp. G3308 AF247691 prokMSA_id:52177 Pandoraea apista strain LMG 16407 AF139173 prokMSA_id:60992 Pandoraea sp. LY AF532595 prokMSA_id:63605 Pandoraea sp. AU1775 prokMSA_id:70261 Pandoraea sp. G9805 AF247697 prokMSA_id:70742 Pandoraea sp. G3307 prokMSA_id:70855 Pandoraea sp. G5084 prokMSA_id:72667 Pandoraea norimbergensis prokMSA_id:72789 Pandoraea sputorum prokMSA_id:72865 Pandoraea apista strain LMG 18089 AF139172 prokMSA_id:73443 Pandoraea pnomenusa AF139174 prokMSA_id:88090 Pandoraea pnomenusa strain 2001008157 AY268168 prokMSA_id:88183 Pandoraea norimbergensis strain CCUG 39188 AY268174 prokMSA_id:89030 Pandoraea pulmonicola strain CCUG 38759 AY268173 prokMSA_id:89390 Pandoraea apista strain CCUG 38412 AY268172 prokMSA_id:89534 Pandoraea pnomenusa strain CCUG 38742 AY268170 prokMSA_id:90020 Pandoraea sp. CCUG 39680 AY268171 prokMSA_id:90734 Pandoraea sp. 2001032141 AY268169 2.28.2.10.2 MEALYBUG_SYMBIONTS 14 seqs 2.28.2.10.2.7887 OTU 1 seq prokMSA_id:7186 endosymbiont of mealybug Pseudococcus longispinus 2.28.2.10.2.7897 OTU 1 seq prokMSA_id:7187 endosymbiont of mealybug Dysmicoccus neobrivipes 2.28.2.10.2.7898 OTU 1 seq prokMSA_id:7188 endosymbiont of mealybug Pseudococcus maritimus 2.28.2.10.2.7935 OTU 1 seq prokMSA_id:63946 Candidatus Tremblaya princeps from Vryburgia brevicruris and 2.28.2.10.2.7952 OTU 3 seqs prokMSA_id:55005 Planococcus citri beta- endosymbiont AF322017 prokMSA_id:63949 Candidatus Tremblaya princeps from Planococcus ficus and 23S prokMSA_id:63951 Candidatus Tremblaya princeps from Planococcus citri and 23S 2.28.2.10.2.7959 OTU 1 seq prokMSA_id:63957 Candidatus Tremblaya princeps from Maconellicoccus australie 2.28.2.10.2.7960 OTU 1 seq prokMSA_id:63958 Candidatus Tremblaya princeps from Ferrisia sp. and 23S gene 2.28.2.10.2.7957 OTU 1 seq prokMSA_id:63955 Candidatus Tremblaya princeps from Maconellicoccus hirsutus 2.28.2.10.2.7963 OTU 1 seq prokMSA_id:63959 Candidatus Tremblaya princeps from Erium globosum and 23S ge 2.28.2.10.2.7985 OTU 1 seq prokMSA_id:63963 Candidatus Tremblaya princeps from Australicoccus grevilleae 2.28.2.10.2.7983 OTU 1 seq prokMSA_id:63960 Candidatus Tremblaya princeps from Ferrisia malvastra and 23 2.28.2.10.2.8061 OTU 1 seq prokMSA_id:42363 Beta-symbiont of Antonina crawii 2.28.2.10.3 BUR.ANDROPOGONIS_SUBGROUP 7 seqs 2.28.2.10.3.7707 OTU 1 seq prokMSA_id:18748 clone Tc63 2.28.2.10.3.7766 OTU 1 seq prokMSA_id:64015 clone:F31 2.28.2.10.3.7899 OTU 1 seq prokMSA_id:7189 Burkholderia andropogonis ATCC 23061 2.28.2.10.3.7914 OTU 1 seq prokMSA_id:7190 Pseudomonas woodsii ATCC 19311 2.28.2.10.3.8077 OTU 2 seqs prokMSA_id:74893 beta clone GuBH2-AG-43 prokMSA_id:76131 beta clone GuBH2-AD-29 2.28.2.10.3.8086 OTU 1 seq prokMSA_id:41478 Beta S-Nnd-12A 2.28.2.10.4 BUR.GLATHEI_SUBGROUP 76 seqs 2.28.2.10.4.7671 OTU 1 seq prokMSA_id:84108 clone CCU24 2.28.2.10.4.7680 OTU 1 seq prokMSA_id:73771 clone p-3623-18B3 2.28.2.10.4.7681 OTU 1 seq prokMSA_id:21765 sludge A21b 2.28.2.10.4.7708 OTU 1 seq prokMSA_id:39961 Burkholderia sp. STM678 strain STM678 2.28.2.10.4.7727 OTU 3 seqs prokMSA_id:17531 clone Tc30 prokMSA_id:44507 clone Tc3 prokMSA_id:52348 clone Tc39 AF445105 2.28.2.10.4.7730 OTU 1 seq prokMSA_id:26920 clone BItii37 2.28.2.10.4.7771 OTU 12 seqs prokMSA_id:7211 Burkholderia caribensis str. MWAP64. Y17009 prokMSA_id:7212 str. TFD2. AF184927 prokMSA_id:7220 Burkholderia caribiensis str. MWAP84. Y17011 prokMSA_id:7227 Burkholderia glathei str. N 15 LMG 14190 prokMSA_id:7228 Burkholderia glathei str. N 15 LMG 14190 prokMSA_id:7229 Burkholderia glathei str. N 15 ATCC 29195 . AB021374 prokMSA_id:7230 Burkholderia NF100 prokMSA_id:16881 Burkholderia sp. GR34 strain GR34 prokMSA_id:38074 WD2109 clone WD2109 AJ292646 prokMSA_id:40645 Burkholderia sp. STM815 strain STM815 AJ302312 prokMSA_id:41082 Burkholderia sp. S4.9 AF247496 prokMSA_id:50723 Burkholderia sp. NF23 strain NF23 2.28.2.10.4.7782 OTU 10 seqs prokMSA_id:7213 Burkholderia EN-B3 prokMSA_id:7214 Burkholderia EN-B9 prokMSA_id:7218 str. BD1-33 prokMSA_id:19103 Diazotroph str. BA126 prokMSA_id:26180 str. 96444 prokMSA_id:37791 Burkholderia sp. AB119 AF364859 prokMSA_id:69874 Diazotroph str. AB48 AF164043 prokMSA_id:71461 beta clone BIsii8 prokMSA_id:71936 Burkholderia hospita AY040365 prokMSA_id:92786 Burkholderia sp. 14 AY238506 2.28.2.10.4.7818 OTU 1 seq prokMSA_id:76574 beta clone JG36-TzT-215 2.28.2.10.4.7830 OTU 1 seq prokMSA_id:38190 WD2106 clone WD2106 2.28.2.10.4.7835 OTU 1 seq prokMSA_id:49415 Burkholderia sp. PJ431 2.28.2.10.4.7841 OTU 1 seq prokMSA_id:7223 Burkholderia RP007 str. RP007 2.28.2.10.4.7848 OTU 1 seq prokMSA_id:34343 Amoebobacter pedioformis 2.28.2.10.4.7846 OTU 1 seq prokMSA_id:7225 unnamed organism 2.28.2.10.4.7895 OTU 2 seqs prokMSA_id:7215 Burkholderia kuranei prokMSA_id:7216 Burkholderia brasilensis str. M130 2.28.2.10.4.7969 OTU 6 seqs prokMSA_id:7202 Burkholderia sp prokMSA_id:7203 Burkholderia 'SAP II' str. SAP II prokMSA_id:34989 clone GL182.9 prokMSA_id:58605 Burkholderia sp. ICD prokMSA_id:68457 Symbiont cf. Burkholderia of Acromyrmex octospinosus prokMSA_id:78791 Burkholderia sp. 56 2.28.2.10.4.8011 OTU 22 seqs prokMSA_id:7192 Burkholderia sp prokMSA_id:7193 str. TFD6 prokMSA_id:7198 Burkholderia sp. str. DhA-54 prokMSA_id:7209 Burkholderia graminis str. AUS35 prokMSA_id:7210 Burkholderia caryophylli str. MCII-8 prokMSA_id:7221 Burkholderia phenazinium str. 1A LMG 2247 prokMSA_id:17921 WD266 clone WD266 prokMSA_id:19267 Beta A30-1 prokMSA_id:19558 WD285 clone WD285 prokMSA_id:26306 WD202 clone WD202 prokMSA_id:27725 Burkholderia sp. OY715 strain OY715 prokMSA_id:37450 Burkholderia sp. 13SM strain 13SM prokMSA_id:40058 Burkholderia sp. HY1 complete prokMSA_id:42224 Burkholderia sp. LMG 19076 prokMSA_id:42336 Burkholderia sp. RW36 strain RW36 prokMSA_id:51147 Beta A40-2 prokMSA_id:66264 Burkholderia sp. TNFYE-5 prokMSA_id:73256 Burkholderia sp. LMG 21262 prokMSA_id:75150 Burkholderia phenazinium isolate Hg 16 prokMSA_id:75878 Burkholderia phenazinium isolate Hg 10 prokMSA_id:76456 Burkholderia phenazinium isolate Hg 14 prokMSA_id:76898 Burkholderia phenazinium isolate Hg 8 2.28.2.10.4.8059 OTU 1 seq prokMSA_id:7219 Burkholderia caribiensis str. MWAP71 2.28.2.10.4.8068 OTU 2 seqs prokMSA_id:7224 Burkholderia caryophylli ATCC 25418 prokMSA_id:7226 Burkholderia caryophylli ATCC 25418 2.28.2.10.4.8069 OTU 3 seqs prokMSA_id:63247 clone FW145 prokMSA_id:63263 clone FW2 prokMSA_id:63267 clone FW66 2.28.2.10.4.8093 OTU 1 seq prokMSA_id:36067 Agricultural soil clone SC-I-39 2.28.2.10.4.8101 OTU 1 seq prokMSA_id:7197 clone RB23 2.28.2.10.4.8120 OTU 1 seq prokMSA_id:24899 Burkholderia sp. NAP1 2.28.2.10.4.8148 OTU 1 seq prokMSA_id:46075 Agricultural soil clone SC-I-84 2.28.2.10.5 BUR.THAILANDENSIS_SUBGROUP 13 seqs 2.28.2.10.5.7747 OTU 1 seq prokMSA_id:7236 Burkholderia mallei str. China 7 ATCC 23344 2.28.2.10.5.7870 OTU 10 seqs prokMSA_id:7237 Burkholderia thailandensis str. E264 ATCC 700388 prokMSA_id:7238 Burkholderia pseudomallei prokMSA_id:7239 Burkholderia pseudomallei str. 1026b prokMSA_id:17136 Burkholderia pseudomallei isolate L2 prokMSA_id:24062 Burkholderia pseudomallei Ara+ biotype isolate S94019 prokMSA_id:36691 Burkholderia pseudomallei isolate V685 prokMSA_id:39013 Burkholderia pseudomallei isolate V688 prokMSA_id:46605 Burkholderia pseudomallei isolate V684 prokMSA_id:48735 Burkholderia pseudomallei isolate H1 prokMSA_id:82150 Burkholderia pseudomallei 2.28.2.10.5.8095 OTU 2 seqs prokMSA_id:30439 Scutellospora persica E28 endosymbiont prokMSA_id:50390 Scutellospora persica E09 endosymbiont 2.28.2.10.6 BUR.CEPACIA_SUBGROUP 107 seqs 2.28.2.10.6.7736 OTU 1 seq prokMSA_id:74696 Pseudomonas sp. 679-2 2.28.2.10.6.7762 OTU 1 seq prokMSA_id:50273 Elbe River snow isolate Iso18 2.28.2.10.6.7813 OTU 1 seq prokMSA_id:56109 Xanthomonas sp. clone 88_5_1 2.28.2.10.6.7837 OTU 7 seqs prokMSA_id:21561 Burkholderia cepacia isolate LS2.4 prokMSA_id:27839 Burkholderia sp. ON1 strain ON1 prokMSA_id:35609 Burkholderia sp. AB2 prokMSA_id:45950 Burkholderia cepacia isolate WS11.7 prokMSA_id:56209 Burkholderia sp. BPC2 prokMSA_id:77747 Burkholderia pyrrocinia strain R1904 prokMSA_id:78347 Burkholderia pyrrocinia strain R11805 2.28.2.10.6.7918 OTU 1 seq prokMSA_id:7280 Burkholderia sp 2.28.2.10.6.8037 OTU 1 seq prokMSA_id:59538 Enrichment culture clone 0.1LB-F 2.28.2.10.6.8044 OTU 5 seqs prokMSA_id:27685 Burkholderia sp. CAB-02 prokMSA_id:32496 Burkholderia cepacia prokMSA_id:52847 Burkholderia anthina strain R-4183 prokMSA_id:80730 Burkholderia anthina strain BHS1 prokMSA_id:81718 Burkholderia cepacia strain B9 2.28.2.10.6.8097 OTU 87 seqs prokMSA_id:7194 str. TFD3 prokMSA_id:7199 Burkholderia VUN10013 str. VUN 10 013 prokMSA_id:7200 Burkholderia LB400 str. LB400. U86373 prokMSA_id:7242 Burkholderia cepacia str. G4 prokMSA_id:7247 Burkholderia sp prokMSA_id:7248 Burkholderia multivorans LMG 13010 prokMSA_id:7249 Burkholderia vietnamiensis str. AMMD prokMSA_id:7250 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541 prokMSA_id:7251 Burkholderia multivorans LMG 14293 prokMSA_id:7252 Burkholderia cepacia LMG 12614t2 prokMSA_id:7253 Burkholderia cepacia LMG 14294 prokMSA_id:7254 Burkholderia vietnamiensis str. TVV75 LMG 10929 prokMSA_id:7255 Burkholderia cepacia str. KP24 prokMSA_id:7258 Burkholderia sp. str. MBIC3837 prokMSA_id:7261 Burkholderia vietnamiensis str. TVV75 prokMSA_id:7264 Burkholderia glumae LMG 2196 prokMSA_id:7265 Burkholderia gladioli LMG 11626 . U96934 prokMSA_id:7266 Burkholderia vietnamiensis str. TVV70 prokMSA_id:7267 Burkholderia gladioli ATCC 10248 prokMSA_id:7269 Burkholderia gladioli subsp. gladioli str. NIAS 1065 prokMSA_id:7270 Burkholderia gladioli prokMSA_id:7271 Burkholderia gladioli prokMSA_id:7272 Burkholderia plantarii str. AZ 8201 LMG 9035 . U96933 prokMSA_id:7273 Burkholderia pyrrocinia str. 2327 LMG 14191 prokMSA_id:7275 Burkholderia m35b str. m35b prokMSA_id:7276 Burkholderia C3B1M str. C3B1M prokMSA_id:7279 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541 prokMSA_id:17335 Burkholderia cocovenenans strain ATCC 33664T prokMSA_id:17796 Burkholderia sp. BM16 complete prokMSA_id:19015 Burkholderia sp. S512 strain S512 AJ300688 prokMSA_id:19447 Burkholderia ambifaria prokMSA_id:20853 Burkholderia sp. WR19X strain WR19X AJ300693 prokMSA_id:27908 Burkholderia sp. casida prokMSA_id:30241 Burkholderia tropicalis strain AB98 prokMSA_id:31797 Burkholderia sp. JR7B3 prokMSA_id:32065 Burkholderia sp. SH1 strain SH1a prokMSA_id:39502 Burkholderia sp. JRB1 prokMSA_id:40802 Burkholderia cepacia prokMSA_id:46233 Burkholderia sp. AB101 prokMSA_id:48688 Burkholderia cepacia prokMSA_id:49014 Burkholderia sp. NCPPB3025 strain NCPPB 3025 prokMSA_id:49852 Burkholderia tropicalis strain Ppe8 prokMSA_id:50006 Burkholderia sp. C4.7 prokMSA_id:51110 WD2114 clone WD2114 prokMSA_id:53380 Burkholderia sp. S2.1 prokMSA_id:53682 Burkholderia gladioli prokMSA_id:54199 Burkholderia sp. RR8 strain RR8 prokMSA_id:59707 Burkholderia cepacia complete prokMSA_id:62903 Pseudomonas prokMSA_id:71097 Burkholderia stabilis prokMSA_id:72468 Burkholderia multivorans prokMSA_id:74106 Burkholderia cepacia genomovar III prokMSA_id:74760 WD206 clone WD206 prokMSA_id:77289 Burkholderia tropicalis strain MOc-725 complete prokMSA_id:77461 Burkholderia tropicalis strain MTo-672 complete prokMSA_id:77530 Burkholderia tropicalis strain MTo-293 complete prokMSA_id:77828 Burkholderia sp. VE22 prokMSA_id:78142 Burkholderia pyrrocinia strain R13058 prokMSA_id:80462 Burkholderia unamae strain MTl-641 prokMSA_id:82944 Burkholderia sp. MN 101.b strain MN 101.b prokMSA_id:84996 Burkholderia multivorans prokMSA_id:89744 Burkholderia pyrrocinia HI2715 AY321587 prokMSA_id:90244 Burkholderia gladioli AY297695 prokMSA_id:91019 Burkholderia cepacia strain 1996031073 AY268144 prokMSA_id:91039 Burkholderia gladioli strain 1993027208 AY268167 prokMSA_id:91062 Burkholderia pseudomallei strain 2002721619 complete AY30581 prokMSA_id:91069 Burkholderia pseudomallei strain 2002721626 complete AY30580 prokMSA_id:91105 Burkholderia cepacia strain 1995019362 AY268149 prokMSA_id:91267 Burkholderia cepacia strain 1997030236 AY268150 prokMSA_id:91294 Burkholderia pseudomallei strain 2002721618 complete AY30581 prokMSA_id:91313 Burkholderia cepacia strain 2001008925 AY268152 prokMSA_id:91324 Burkholderia cepacia strain 1996031071 AY268147 prokMSA_id:91383 Burkholderia pseudomallei strain 2001029240 complete AY30577 prokMSA_id:91413 Burkholderia cepacia strain 1997019658 AY268140 prokMSA_id:91511 Burkholderia cepacia strain 1995030549 AY268146 prokMSA_id:91555 Burkholderia mallei strain 2002734303 complete AY305742 prokMSA_id:91595 Burkholderia gladioli strain 2002721590 AY268163 prokMSA_id:91633 Burkholderia cepacia strain 1995035407 AY268148 prokMSA_id:91654 Burkholderia cepacia strain 1996034502 AY268141 prokMSA_id:91737 Burkholderia pseudomallei strain 2000032027 complete AY30576 prokMSA_id:91750 Burkholderia cepacia strain 1996031072 AY268145 prokMSA_id:91794 Burkholderia cepacia strain 1997024024 AY268143 prokMSA_id:91849 Burkholderia cepacia strain 2002721599 AY268151 prokMSA_id:91916 Burkholderia gladioli strain 1995009253 AY268165 prokMSA_id:91924 Burkholderia gladioli strain 1996012911 AY268166 prokMSA_id:91991 Burkholderia gladioli strain 2002721589 AY268164 prokMSA_id:92151 Burkholderia sp. 45250588-5 AY353696 2.28.2.10.6.8118 OTU 2 seqs prokMSA_id:7244 Burkholderia gladioli EY 3258 prokMSA_id:32920 Burkholderia gladioli Genomic 1343 nt 2 segments 2.28.2.10.6.8132 OTU 1 seq prokMSA_id:7260 Thiomonas cuprina str. Hö5 DSM 5495 2.28.2.11 OXALOBACTER_GROUP 147 seqs 2.28.2.11.7663 OTU 1 seq prokMSA_id:20952 Duganella clone MT18 2.28.2.11.7743 OTU 1 seq prokMSA_id:74451 Herbaspirillum sp. NAH4 2.28.2.11.7793 OTU 1 seq prokMSA_id:16620 Zoogloea sp. clone F8 2.28.2.11.7799 OTU 1 seq prokMSA_id:43089 beta 1275a 2.28.2.11.7804 OTU 1 seq prokMSA_id:27849 #0319-7F2 2.28.2.11.7825 OTU 1 seq prokMSA_id:75756 beta clone JG37-AG-125 2.28.2.11.7826 OTU 1 seq prokMSA_id:43158 Beta A0823 2.28.2.11.7843 OTU 5 seqs prokMSA_id:7352 unnamed organism prokMSA_id:74938 Massilia timonae strain 97A4424 prokMSA_id:75063 Massilia timonae strain 99A9205 prokMSA_id:75326 Massilia timonae strain 85A2206 prokMSA_id:78767 Massilia sp. 72 2.28.2.11.7845 OTU 1 seq prokMSA_id:19906 Syncytium endosymbiont of Diaphorina citri 2.28.2.11.7861 OTU 1 seq prokMSA_id:27357 oxSCC-6 2.28.2.11.7866 OTU 2 seqs prokMSA_id:7343 Pseudomonas lemoignei prokMSA_id:7344 ATCC 17989 2.28.2.11.7878 OTU 1 seq prokMSA_id:83836 clone 29 2.28.2.11.7883 OTU 1 seq prokMSA_id:7326 clone env_25 2.28.2.11.7900 OTU 1 seq prokMSA_id:70208 Banisveld landfill BVC71 2.28.2.11.7913 OTU 1 seq prokMSA_id:7335 Duganella zoogloeoides IAM 12670 2.28.2.11.7921 OTU 74 seqs prokMSA_id:7288 str. MY14 prokMSA_id:7289 str. D-6 prokMSA_id:7290 str. D-7 prokMSA_id:7291 str. ND5 prokMSA_id:7295 Herbaspirillum rubrisubalbicans ATCC 19308 prokMSA_id:7316 Telluria mixta ACM 1762 prokMSA_id:7347 Telluria chitinolytica str. 20M ACM 3522 prokMSA_id:7365 Oxalobacter formigenes str. BA4 prokMSA_id:7366 Oxalobacter formigenes str. BLISS prokMSA_id:7369 Oxalobacter formigenes str. OXCR prokMSA_id:7371 Oxalobacter formigenes str. OXK prokMSA_id:18940 Beta Ter6 isolate Ter6 prokMSA_id:19827 Beta Wuba26 prokMSA_id:21324 clone RB13C5 AF407411 prokMSA_id:26437 clone LO13.5 AF358019 prokMSA_id:27239 rape rhizosphere wr0040 AJ295498 prokMSA_id:32705 Beta Ter331 isolate Ter331 prokMSA_id:34084 sp. isolate K1 prokMSA_id:35397 hydrocarbon seep BPC087 AF154097 prokMSA_id:37561 mRNA clone sipK84 prokMSA_id:43640 Herbaspirillum sp. B65 AB049103 prokMSA_id:50320 clone p-2518-18B5 prokMSA_id:57762 Collimonas fungivorans strain CTE227 AJ496445 prokMSA_id:57763 Collimonas fungivorans strain CTE118 prokMSA_id:58574 Herbaspirillum sp. PIV-34-1 strain PIV-34-1 prokMSA_id:59892 beta clone ccspost237 AY133107 prokMSA_id:59896 beta clone ccspost2128 AY133100 prokMSA_id:60344 clone Glu14 AF534196 prokMSA_id:61829 beta clone CLi51 AF529336 prokMSA_id:62403 beta clone FTL254 prokMSA_id:62413 beta clone FTL217 prokMSA_id:62422 beta clone FTL205 AF529095 prokMSA_id:63192 Oxalobacter sp. p8E prokMSA_id:68775 Glacial ice CanDirty89 AF479326 prokMSA_id:75668 Herbaspirillum sp. Hg 1 prokMSA_id:76423 Herbaspirillum lusitanum complete AF543312 prokMSA_id:76810 Massilia cf. timonae strain 96A14209 prokMSA_id:78721 isolate 5g06 AY177773 prokMSA_id:79075 Phenanthrene-degrading 70-2 prokMSA_id:79614 clone ARKMP90 prokMSA_id:79646 clone ARKMP91 AY198109 prokMSA_id:79836 Arctic sea ice ARK10157 AF468345 prokMSA_id:79839 clone ARKMP-27 AF468325 prokMSA_id:79895 clone ARKDMS-28 AF468241 prokMSA_id:79901 Arctic sea ice ARK10172 prokMSA_id:79952 clone ARKMP-113 AF468331 prokMSA_id:80242 Arctic sea ice ARK10299 AF468350 prokMSA_id:80296 clone ARKMP92 AY198108 prokMSA_id:80338 clone ARKMP-56 AF468329 prokMSA_id:80342 Arctic sea ice ARK10162 AF468346 prokMSA_id:80494 Herbaspirillum seropedicae strain Z78 AY191275 prokMSA_id:80693 clone ARKMP-20 AF468324 prokMSA_id:80776 clone ARKMP-22 prokMSA_id:80818 clone ARKMP80 AY198106 prokMSA_id:80915 clone ARKICE-119 AF468301 prokMSA_id:80971 clone ARKMP10 AY198105 prokMSA_id:80972 clone ARKMP-110 AF468330 prokMSA_id:81248 Arctic sea ice ARK10167 isolate ARK10167 AY227004 prokMSA_id:81252 clone ZZ15C3 AY214204 prokMSA_id:81596 clone KD7-1 prokMSA_id:81640 clone KD6-99 AY218774 prokMSA_id:82198 clone ZZ15C16 AY214208 prokMSA_id:82371 clone KD5-6 prokMSA_id:90518 Glacier FJI10 AY315180 prokMSA_id:91268 G9 AY345390 prokMSA_id:91343 H12 AY345556 prokMSA_id:91642 H9 AY345545 prokMSA_id:93350 Herbaspirillum sp. Chnp3-5 AY367037 prokMSA_id:93490 Ultramicrobacterium str. Um1 AY367012 prokMSA_id:94041 beta- clone Gitt-GS-155 AJ582196 prokMSA_id:94149 beta- clone Gitt-GS-102 AJ582190 prokMSA_id:96354 beta clone SW20 AJ575693 prokMSA_id:96491 beta clone SW38 AJ575692 prokMSA_id:98773 beta clone SW15 AJ575691 2.28.2.11.7936 OTU 2 seqs prokMSA_id:39233 isolate HRV10 prokMSA_id:44013 isolate HRV40 2.28.2.11.7954 OTU 4 seqs prokMSA_id:25535 earthworm cast clone C016 AY037674 prokMSA_id:83752 beta clone SL2-1-F1 prokMSA_id:83755 beta clone SL2-1-F9 AY214615 prokMSA_id:84959 beta clone SL2-1-D10 2.28.2.11.7968 OTU 1 seq prokMSA_id:7364 Oxalobacter formigenes str. OxB ATCC 35274 2.28.2.11.7997 OTU 1 seq prokMSA_id:65795 soil clone S0173 2.28.2.11.8013 OTU 2 seqs prokMSA_id:23044 Beta A1020 prokMSA_id:36180 Beta Wuba70 2.28.2.11.8034 OTU 8 seqs prokMSA_id:7282 str. PUS10.40 prokMSA_id:7333 str. HTC018 prokMSA_id:7334 str. HTB091 prokMSA_id:22305 J.agaricidamnosum prokMSA_id:83280 Janthinobacterium lividum prokMSA_id:83537 Antarctic R-7687 strain R-7687 prokMSA_id:84410 Antarctic R-7614 strain R-7614 prokMSA_id:91072 clone K2-30-5 AY344370 2.28.2.11.8032 OTU 11 seqs prokMSA_id:7327 Pseudomonas mephitica ATCC 33665. AB021388 prokMSA_id:17456 Vestimentiferan symbiont TW-5 AB042420 prokMSA_id:22796 Beta Wuba73 prokMSA_id:26824 Agricultural soil isolate SI-5 AJ252575 prokMSA_id:55297 beta clone CLi13 prokMSA_id:61808 beta clone CLs99 prokMSA_id:61811 beta clone CLs79 prokMSA_id:66301 Aquaspirillum arcticum prokMSA_id:75470 beta clone Gitt-KF-125 prokMSA_id:85781 Oxalobacteraceae MWH73 prokMSA_id:97163 beta clone SW57 AJ575697 2.28.2.11.8058 OTU 19 seqs prokMSA_id:7283 Herbaspirillum seropedicae str. Z67 DSM 6445 prokMSA_id:7300 Herbaspirillum frisingense str. 75B prokMSA_id:7301 Herbaspirillum frisingense str. GSF30 prokMSA_id:7302 Herbaspirillum frisingense str. Mb11 prokMSA_id:7306 Herbaspirillum sp. BA10 prokMSA_id:7308 Herbaspirillum sp. BA12 prokMSA_id:7309 Herbaspirillum sp. BA14 prokMSA_id:7310 Herbaspirillum sp. BA15 prokMSA_id:7313 Herbaspirillum seropedicae strain BA153 prokMSA_id:7314 Herbaspirillum sp. BA161 prokMSA_id:16576 Herbaspirillum sp. B501 prokMSA_id:29908 Nitrogen-fixing COL prokMSA_id:30348 Herbaspirillum seropedicae strain X8 prokMSA_id:47876 Pseudomonas huttiensis prokMSA_id:63611 Herbaspirillum frisingense prokMSA_id:63615 Pseudomonas huttiensis prokMSA_id:69647 Herbaspirillum chlorophenolicum prokMSA_id:80103 Herbaspirillum seropedicae strain M2 prokMSA_id:80182 Herbaspirillum seropedicae strain Z152 2.28.2.11.8124 OTU 1 seq prokMSA_id:44186 Agricultural soil clone SC-I-14 2.28.2.11.8141 OTU 2 seqs prokMSA_id:43330 rape rhizosphere wr0025 prokMSA_id:49894 rape rhizosphere wr0070 2.28.2.11.8158 OTU 2 seqs prokMSA_id:7345 str. Mena 23/3-3c DSM 6920 prokMSA_id:32294 beta 2.28.2.12 PNB.NECESSARIUS_GROUP 44 seqs 2.28.2.12.7661 OTU 24 seqs prokMSA_id:7373 Polynucleobacter necessarius prokMSA_id:7374 clone ACK-L5 prokMSA_id:7376 clone ACK-C4 prokMSA_id:16472 FukuN33 prokMSA_id:18436 beta clone CRE-FL14 AF141443 prokMSA_id:22870 FukuS36 AJ290074 prokMSA_id:24264 FukuS183 AJ290052 prokMSA_id:25062 FukuS99 AJ290020 prokMSA_id:41436 beta clone CRE-FL79 AF141492 prokMSA_id:44315 beta clone 06 prokMSA_id:48589 FukuS21 AJ290076 prokMSA_id:51668 beta clone CRE-FL26 AF141453 prokMSA_id:52483 FukuN60 AJ290077 prokMSA_id:70009 beta clone PRD01a006B prokMSA_id:72324 FukuS35 prokMSA_id:82748 Beta MWH-MoK7 prokMSA_id:83428 Beta MWH-MoIso1 AJ550671 prokMSA_id:83449 Beta MWH-MoK4 prokMSA_id:84229 Beta MWH-HuK1 prokMSA_id:84339 Beta MWH-JaK3 prokMSA_id:84619 Beta MWH-T2W17 prokMSA_id:85167 Beta MWH-T1W11 AJ550670 prokMSA_id:86341 beta clone TLM03/TLMdgge33 prokMSA_id:86483 Beta MWH-HuW1 AJ550666 2.28.2.12.7677 OTU 1 seq prokMSA_id:7375 clone ACK-L6 2.28.2.12.7678 OTU 1 seq prokMSA_id:7378 str. LD17 2.28.2.12.7859 OTU 17 seqs prokMSA_id:82497 Beta MWH-T2W3 prokMSA_id:82561 Beta MWH-MoIso2 prokMSA_id:83527 Beta MWH-CaK1 prokMSA_id:83765 Beta MWH-JaW7 prokMSA_id:83856 Beta MWH-T1W13 prokMSA_id:84154 Beta MWH-VicM1 prokMSA_id:84500 Beta MWH-MoNR2 prokMSA_id:84562 Beta MWH-TaW3 AJ550661 prokMSA_id:84831 Beta MWH-JaW21 prokMSA_id:85207 Beta MWH-T1W2 prokMSA_id:85249 Beta MWH-MoNR1 prokMSA_id:85445 Beta MWH-BeK4 prokMSA_id:85580 Beta MWH-CaK5 prokMSA_id:85777 Beta MWH-T2W13 prokMSA_id:85828 Beta MWH-MoK3 prokMSA_id:86040 Beta MWH-MoK1 prokMSA_id:86152 Beta MWH-JaW9 2.28.2.12.8163 OTU 1 seq prokMSA_id:23357 beta clone 27 2.28.2.13 RAL.EUTROPHA_GROUP 80 seqs 2.28.2.13.7755 OTU 1 seq prokMSA_id:33253 Ralstonia sp. NAH8 2.28.2.13.7767 OTU 2 seqs prokMSA_id:81590 clone SB2 prokMSA_id:82219 clone SB1 2.28.2.13.7776 OTU 1 seq prokMSA_id:82952 soil clone Tc131-42 2.28.2.13.7798 OTU 1 seq prokMSA_id:76540 beta clone S36.51SM 2.28.2.13.7823 OTU 7 seqs prokMSA_id:7398 Ralstonia sp. str. BKME-6 prokMSA_id:7402 Ralstonia MBIC3902 str. MBIC3902 prokMSA_id:21182 Ralstonia sp. HAB-02 prokMSA_id:50357 Ralstonia sp. KN1 prokMSA_id:50666 Ralstonia basilensis prokMSA_id:70450 Ralstonia basilensis strain ER121 prokMSA_id:73500 Ralstonia basilensis strain DSM 11853 2.28.2.13.7993 OTU 4 seqs prokMSA_id:27267 soil clone 1326-2 AF423222 prokMSA_id:82483 soil clone Tc119-F01 prokMSA_id:85125 soil clone Tc133-98 prokMSA_id:85756 soil clone Tc122-E07 AY242701 2.28.2.13.8015 OTU 1 seq prokMSA_id:63266 clone FW119 2.28.2.13.8110 OTU 8 seqs prokMSA_id:7384 str. TM24 prokMSA_id:7385 str. JHH 1448 prokMSA_id:7392 Ralstonia paucula LMG 3413 prokMSA_id:7401 Ralstonia FRA01 str. FRA01 prokMSA_id:22192 Ralstonia sp. S23 prokMSA_id:62980 Ralstonia sp. clone T5-13 rrn prokMSA_id:85415 Ralstonia paucula prokMSA_id:86697 Ralstonia sp. 50 2.28.2.13.8128 OTU 55 seqs prokMSA_id:7380 Ralstonia eutropha str. 335 R.Y. Stanier ATCC 17697 prokMSA_id:7381 str. TFD43 prokMSA_id:7382 Ralstonia eutropha str. DS185 prokMSA_id:7383 Ralstonia sp. str. MBIC3838 prokMSA_id:7386 Ralstonia eutropha DSM 2839 prokMSA_id:7387 Ralstonia sp. str. CT14 prokMSA_id:7388 Cupriavidus necator ATCC 43291 prokMSA_id:7389 Ralstonia eutropha str. KT1 prokMSA_id:7391 Ralstonia eutropha str. CH34 prokMSA_id:7397 Ralstonia TFD41 str. TFD41 prokMSA_id:7399 Ralstonia sp. str. CT12 prokMSA_id:7400 Ralstonia eutropha str. JS705 prokMSA_id:17535 Ralstonia sp. JMP134 complete AF139729 prokMSA_id:20648 Ralstonia taiwanensis strain LMG 19424 AF300324 prokMSA_id:20728 Ralstonia sp. PHS1 AF239160 prokMSA_id:22497 Ralstonia sp. HAB-01 AB051680 prokMSA_id:24387 Ralstonia sp. HAB-08 prokMSA_id:25026 Burkholderia sp. oral strain C37KA prokMSA_id:27222 Ralstonia sp. 1249 complete prokMSA_id:27700 Ralstonia sp. BA-0323 prokMSA_id:29604 Ralstonia sp. P-10 prokMSA_id:34687 Ralstonia oxalatica complete AF155567 prokMSA_id:40792 Ralstonia sp. U2 prokMSA_id:41961 Ralstonia sp. LD35 prokMSA_id:47468 Ralstonia taiwanensis strain LMG 19425 prokMSA_id:52220 Ralstonia sp. HAB-18 prokMSA_id:52615 and method detecting KB1 strain by using in the prokMSA_id:53615 Ralstonia campinensis strain WS2 AF312020 prokMSA_id:56268 Ralstonia sp. AU3369 prokMSA_id:56519 Ralstonia sp. AU0626 prokMSA_id:56669 Ralstonia sp. AU626 prokMSA_id:58406 Ralstonia eutropha prokMSA_id:62981 Ralstonia sp. clone T5-19 rrn prokMSA_id:66050 Ralstonia sp. AU1618 prokMSA_id:66058 Ralstonia sp. AU3801 prokMSA_id:66059 Ralstonia sp. AU3313 prokMSA_id:67342 Ralstonia sp. BPC3 prokMSA_id:71428 Ralstonia campinensis strain LMG 20579 prokMSA_id:72179 Ralstonia campinensis strain LMG 20568 AY040349 prokMSA_id:72788 Ralstonia campinensis strain LMG 20576 AY040355 prokMSA_id:73191 Ralstonia sp. MN 43 isolate MN 43 prokMSA_id:83846 Ralstonia basilensis strain:KF708 AB109778 prokMSA_id:85683 clone CCMC0 AY221074 prokMSA_id:88067 Ralstonia taiwanensis strain MS1 AY303977 prokMSA_id:92814 Ralstonia sp. 80 AY238507 prokMSA_id:95536 Ralstonia sp. 1245 AB121221 prokMSA_id:96429 Ralstonia sp. 1244a complete AB054960 prokMSA_id:96723 Ralstonia sp. 1266 AB121227 prokMSA_id:96923 Ralstonia sp. 1265a AB121226 prokMSA_id:97047 Ralstonia sp. 1278a AB121228 prokMSA_id:97064 Ralstonia sp. 1259 AB121225 prokMSA_id:97344 Ralstonia sp. 1243 AB121220 prokMSA_id:97465 Ralstonia sp. 1247 AB121223 prokMSA_id:98039 Ralstonia sp. 1250 AB121224 prokMSA_id:98665 Ralstonia sp. 1246a AB121222 2.28.2.14 RAL.SOLANACEARUM_GROUP 84 seqs 2.28.2.14.1 PS.SYZYGII_SUBGROUP 80 seqs 2.28.2.14.1.7761 OTU 80 seqs prokMSA_id:7404 Ralstonia solanacearum str. R780. U28232 prokMSA_id:7405 Ralstonia solanacearum str. R142 prokMSA_id:7406 Pseudomonas syzygii str. R058 prokMSA_id:7407 Pseudomonas syzygii str. R001 prokMSA_id:7408 Ralstonia Pseudomonas syzygii ATCC 49543 prokMSA_id:7410 str. R223 prokMSA_id:7411 str. R233 prokMSA_id:7412 str. R506 prokMSA_id:7415 Ralstonia pickettii str. PKO1 prokMSA_id:7417 Ralstonia pickettii str. K 550 ATCC 27512. X67042 prokMSA_id:7422 Ralstonia solanacearum ACH 0171 prokMSA_id:7423 Ralstonia solanacearum ACH 092 prokMSA_id:7424 Ralstonia solanacearum ACH 0732 prokMSA_id:7427 Ralstonia solanacearum str. R288. U27984 prokMSA_id:7428 Ralstonia solanacearum ACH 092 prokMSA_id:7429 Ralstonia solanacearum ACH 0171. U27986 prokMSA_id:7430 Ralstonia solanacearum str. R791. U27987 prokMSA_id:7431 Ralstonia solanacearum CIP 365 prokMSA_id:7434 Ralstonia solanacearum str. PDDCC1727; K60 ATCC 1696 prokMSA_id:7435 Ralstonia solanacearum str. Br150. U28225 prokMSA_id:7436 Ralstonia solanacearum str. R207 prokMSA_id:7437 Ralstonia solanacearum str. R639. U28231 prokMSA_id:7438 Ralstonia solanacearum CIP 210 prokMSA_id:7439 Ralstonia solanacearum CIP 10. U28227 prokMSA_id:7441 Ralstonia solanacearum ATCC 11696 . S55002 prokMSA_id:7442 Ralstonia solanacearum str. R633. U28230 prokMSA_id:7443 Ralstonia solanacearum str. R634. U28229 prokMSA_id:7444 Ralstonia solanacearum CIP 238. U28226 prokMSA_id:7445 Ralstonia solanacearum ACH 0158 prokMSA_id:7448 Ralstonia solanacearum ACH 0158 prokMSA_id:7449 Ralstonia solanacearum ATCC 11696 prokMSA_id:7450 Ralstonia solanacearum str. R483. U28228 prokMSA_id:18760 AT425_EubE3 prokMSA_id:19239 Ralstonia solanacearum strain CFBP1036 prokMSA_id:23650 Ralstonia thomasii strain RAL4 MC5 prokMSA_id:24261 Ralstonia detusculanense AF280433 prokMSA_id:26889 Pseudomonas sp. BUV1 AF396930 prokMSA_id:27013 Ralstonia solanacearum strain MAFF211266 AF207897 prokMSA_id:29028 Ralstonia thomasii strain LBV407 UCL310 AJ270257 prokMSA_id:31873 Ralstonia pickettii strain RAL01 LMG 7160 prokMSA_id:33270 Ralstonia solanacearum isolate:MAFF 301520 AB024607 prokMSA_id:37841 Ralstonia thomasii strain RAL13 LBV371 AJ270256 prokMSA_id:38402 Ralstonia solanacearum isolate:MAFF 211271 AB024609 prokMSA_id:39252 Ralstonia solanacearum isolate:MAFF 301527 AB024605 prokMSA_id:39540 Ralstonia sp. APF11 AB045276 prokMSA_id:40253 Ralstonia solanacearum isolate:MAFF 301559 AB024608 prokMSA_id:41733 Burkholderia solanacearum ATCC 10696 Genomic 1345 nt 2 segme prokMSA_id:42127 Ralstonia solanacearum strain NCPPB342 AF207896 prokMSA_id:42763 Ralstonia solanacearum strain CFBP734 AF207895 prokMSA_id:43651 Ralstonia solanacearum isolate:MAFF 301522 AB024606 prokMSA_id:44709 Pseudomonas sp. MF254A prokMSA_id:44713 Ralstonia solanacearum strain NCPPB1018 AF207893 prokMSA_id:47343 Ralstonia solanacearum strain CFBP712 prokMSA_id:48001 Ralstonia solanacearum strain CFBP2146 AF207894 prokMSA_id:48140 Ralstonia thomasii strain LMG6866 prokMSA_id:50403 Ralstonia solanacearum megaplasmid complete NC_003296 prokMSA_id:50898 Ralstonia solanacearum isolate:MAFF 211266 AB024604 prokMSA_id:57520 Blood disease BananaE prokMSA_id:57720 Ralstonia sp. CCUG 46389 strain CCUG 46389 prokMSA_id:58388 Ralstonia solanacearum GMI1000 chromosome complete ; segment prokMSA_id:58389 Ralstonia solanacearum GMI1000 megaplasmid complete ; segmen prokMSA_id:58390 Ralstonia solanacearum GMI1000 chromosome complete ; segment prokMSA_id:58391 Ralstonia solanacearum GMI1000 chromosome complete ; segment prokMSA_id:61100 Ralstonia solanacearum complete genome NC_003295 prokMSA_id:63606 Ralstonia sp. AU378 prokMSA_id:64267 prokMSA_id:67749 Ralstonia sp. AU2944 AF488779 prokMSA_id:72352 Ralstonia sp. AV5BG prokMSA_id:72714 Burkholderia sp. oral clone AK168 prokMSA_id:78927 Ralstonia sp. 97 prokMSA_id:81066 Ralstonia solanacearum prokMSA_id:82456 Ralstonia sp. Q3-8/14 prokMSA_id:88218 Ralstonia pickettii strain 2000032023 AY268176 prokMSA_id:88249 Ralstonia pickettii strain 2000030791 AY268179 prokMSA_id:89041 clone O-F-8 AF443572 prokMSA_id:89721 Ralstonia pickettii strain 2002721591 AY268178 prokMSA_id:89827 Ralstonia pickettii strain 2000030635 AY268180 prokMSA_id:90376 Ralstonia pickettii strain 2002721592 AY268177 prokMSA_id:90720 Ralstonia sp. 1999043680 AY268181 prokMSA_id:91538 K2-21 AY345430 2.28.2.14.3 RAL.SOLAN4_SUBGROUP 4 seqs 2.28.2.14.3.7778 OTU 1 seq prokMSA_id:79758 Ralstonia insidiosa strain CCUG 46388 2.28.2.14.3.7832 OTU 1 seq prokMSA_id:16927 Ralstonia CtaxAus-5 2.28.2.14.3.7922 OTU 2 seqs prokMSA_id:7432 Ralstonia solanacearum str. H1 prokMSA_id:70664 Ralstonia solanacearum 2.28.3 GAMMA_SUBDIVISION 4359 seqs 2.28.3.1 HALORHODOSPIRA_GROUP 5 seqs 2.28.3.1.9371 OTU 1 seq prokMSA_id:7452 Halorhodospira halochloris str. BN 9851; 51/12 2.28.3.1.9373 OTU 1 seq prokMSA_id:7453 clone QSSC9L-5 2.28.3.1.9375 OTU 1 seq prokMSA_id:7457 Halorhodospira halophila str. BN 9624; 51/1 2.28.3.1.9450 OTU 2 seqs prokMSA_id:62637 Halorhodospira neutrophila strain SG3301 prokMSA_id:62638 Halorhodospira neutrophila strain SG3304 2.28.3.2 ARHODOMONAS_AND_NITROCOCCUS_GROUP 18 seqs 2.28.3.2.8218 OTU 1 seq prokMSA_id:52546 thermal soil clone YNPFFP50 2.28.3.2.8306 OTU 1 seq prokMSA_id:62495 Ectothiorhodospiraceae clone LA7-B9 2.28.3.2.8792 OTU 1 seq prokMSA_id:23032 gamma clone MPD-09 2.28.3.2.8889 OTU 5 seqs prokMSA_id:55809 gamma clone ML310M-42 prokMSA_id:56490 gamma clone ML110J-20 prokMSA_id:62733 gamma clone ML617.5J-3 prokMSA_id:63855 gamma clone ML110J-5 prokMSA_id:79965 gamma clone ML812M-17 2.28.3.2.8917 OTU 2 seqs prokMSA_id:49121 gamma MERTZ_2CM_54 prokMSA_id:54801 gamma MERTZ_2CM_24 AF424060 2.28.3.2.8933 OTU 1 seq prokMSA_id:41406 gamma MERTZ_21CM_15 2.28.3.2.9378 OTU 1 seq prokMSA_id:7459 clone EKHO-2 2.28.3.2.9429 OTU 1 seq prokMSA_id:7461 Alkalispirillum mobilis 2.28.3.2.9427 OTU 1 seq prokMSA_id:7460 Nitrococcus mobilis ATCC 25380 2.28.3.2.9598 OTU 4 seqs prokMSA_id:62740 gamma clone ML602J-47 prokMSA_id:63857 gamma clone ML110J-38 prokMSA_id:79794 gamma clone ML812M-2 prokMSA_id:80413 gamma clone ML615J-15 2.28.3.3 ECTOTHIORHODOSPIRA_GROUP 31 seqs 2.28.3.3.8258 OTU 4 seqs prokMSA_id:7464 Ectothiorhodospira haloalkaliphila str. BN 9902; C prokMSA_id:7465 Ectothiorhodospira 'Bogoria Red' str. Bogoria Red prokMSA_id:28189 Ectothiorhodospira sp. 'Bogoria Red' strain RB1 prokMSA_id:32582 Ectothiorhodospira sp. 'Bogoria Red' strain RM1 2.28.3.3.8671 OTU 6 seqs prokMSA_id:20571 HOC49 AB054183 prokMSA_id:21103 HOC47 AB054181 prokMSA_id:33232 HOC40 AB054174 prokMSA_id:49286 HOC5 prokMSA_id:49861 HOC36 prokMSA_id:52080 HOC38 2.28.3.3.8747 OTU 1 seq prokMSA_id:78921 clone JG30-KF-CM35 2.28.3.3.8858 OTU 2 seqs prokMSA_id:7469 clone BURTON-56 prokMSA_id:21294 gamma MERTZ_0CM_117 2.28.3.3.8872 OTU 1 seq prokMSA_id:62739 gamma clone ML623J-18 2.28.3.3.8984 OTU 1 seq prokMSA_id:22774 gamma MERTZ_0CM_102 2.28.3.3.9059 OTU 1 seq prokMSA_id:58382 clone SBRH10 2.28.3.3.9206 OTU 1 seq prokMSA_id:54886 gamma MERTZ_21CM_39 2.28.3.3.9246 OTU 1 seq prokMSA_id:83068 clone CCD24 2.28.3.3.9455 OTU 1 seq prokMSA_id:7468 Ectothiorhodospira vacuolata str. BN 9512; beta1 DSM 2111 2.28.3.3.9451 OTU 1 seq prokMSA_id:7467 Ectothiorhodospira shaposhnikovii str. BN 9912; Truper 8115 2.28.3.3.9480 OTU 1 seq prokMSA_id:7471 Ectothiorhodospira marina str. BN 9914; Matheron BA 1010 DSM 2.28.3.3.9519 OTU 1 seq prokMSA_id:71608 Thioalcalovibrio nitratus 2.28.3.3.9585 OTU 8 seqs prokMSA_id:21557 HOC3 AB054137 prokMSA_id:30803 HOC28 prokMSA_id:40999 HOC37 AB054171 prokMSA_id:46213 HOC46 prokMSA_id:47851 HOC50 prokMSA_id:50717 HOC31 prokMSA_id:51009 HOC12 prokMSA_id:54932 HOC33 2.28.3.3.9657 OTU 1 seq prokMSA_id:69845 Thioalcalovibrio versutus 2.28.3.4 THIOBACILLUS_GROUP 135 seqs 2.28.3.4.1 THB.FERROOXIDANS_SUBGROUP 45 seqs 2.28.3.4.1.8320 OTU 1 seq prokMSA_id:58315 clone BA11 2.28.3.4.1.8495 OTU 1 seq prokMSA_id:32422 Acidithiobacillus cuprithermicus 2.28.3.4.1.8552 OTU 24 seqs prokMSA_id:7484 Thiobacillus ferrooxidans str. N-Fe2 prokMSA_id:7487 str. NFe4 prokMSA_id:7489 clone cOS1 prokMSA_id:7491 Thiobacillus ferrooxidans str. N-Fe4 prokMSA_id:7500 Thiobacillus ferrooxidans str. N-Fe3 prokMSA_id:18606 Acidithiobacillus sp. NO-25 AF376019 prokMSA_id:19600 clone RA13C4 prokMSA_id:23599 Acidithiobacillus ferrooxidans strain ATCC33020 prokMSA_id:26996 Acidithiobacillus ferrooxidans strain SS6 prokMSA_id:29211 clone RA13C22 prokMSA_id:29934 Acidithiobacillus sp. NO-8 prokMSA_id:31580 Acidithiobacillus sp. NO-37 AF376020 prokMSA_id:38200 Acidithiobacillus sp. SSP prokMSA_id:38412 clone RB13C4 prokMSA_id:43942 clone RA13C21 prokMSA_id:45494 Acidithiobacillus sp. KSC1 prokMSA_id:53234 Acidithiobacillus ferrooxidans 23S and internal transcribed prokMSA_id:53334 Acidithiobacillus ferrooxidans 23S and internal transcribed prokMSA_id:67351 Acidithiobacillus ferrooxidans strain ATCC19859 AJ457808 prokMSA_id:67355 Acidithiobacillus ferrooxidans strain CC1 prokMSA_id:67356 Acidithiobacillus ferrooxidans strain BRGM1 prokMSA_id:70237 Acidithiobacillus ferrooxidans strain ATCC23270T prokMSA_id:79379 Acidithiobacillus ferrooxidans strain ATCC23270 prokMSA_id:79580 Acidithiobacillus ferrooxidans strain TFI 2.28.3.4.1.8719 OTU 1 seq prokMSA_id:60589 clone G73 2.28.3.4.1.8951 OTU 7 seqs prokMSA_id:7480 Thiobacillus thiooxidans prokMSA_id:7494 Thiobacillus caldus str. KU DSM 8584 prokMSA_id:7498 TC 1 prokMSA_id:7499 str. GO-1 prokMSA_id:48511 Acidithiobacillus caldus P5-10 prokMSA_id:48523 Enrichment culture clone ECC44 AF226672 prokMSA_id:65356 Acidithiobacillus caldus 2.28.3.4.1.9204 OTU 2 seqs prokMSA_id:7495 Thiobacillus sp. str. C prokMSA_id:66601 Thermithiobacillus tepidarius strain DSM 3134 2.28.3.4.1.9224 OTU 5 seqs prokMSA_id:7482 str. NFe4 prokMSA_id:7483 Thiobacillus sp prokMSA_id:7485 Thiobacillus thiooxidans str. B-53 prokMSA_id:22453 Acidithiobacillus sp. SH prokMSA_id:56606 Acidithiobacillus albertensis strain DSM 14366 2.28.3.4.1.9498 OTU 2 seqs prokMSA_id:79344 clone csbio160361 prokMSA_id:79587 clone csbio160382 2.28.3.4.1.9497 OTU 1 seq prokMSA_id:53544 Acidithiobacillus ferrooxidans strain ATCC 19859 ; -23S inte 2.28.3.4.1.9578 OTU 1 seq prokMSA_id:7497 VC2.1 Bac43 complete 2.28.3.4.2 NSC.OCEANI_SUBGROUP 6 seqs 2.28.3.4.2.8407 OTU 1 seq prokMSA_id:77717 Nitrosococcus halophilus isolate Nc4 2.28.3.4.2.8718 OTU 1 seq prokMSA_id:51207 Nitrosococcus halophilus Nc4 2.28.3.4.2.9279 OTU 1 seq prokMSA_id:44340 gamma clone R202 2.28.3.4.2.9568 OTU 1 seq prokMSA_id:63326 clone RCP2-96 2.28.3.4.2.9571 OTU 2 seqs prokMSA_id:7502 Nitrosococcus oceani str. C-107 prokMSA_id:78358 Nitrosococcus oceani isolate Nc10 2.28.3.4.3 BEG.ALBA_SUBGROUP 23 seqs 2.28.3.4.3.8321 OTU 2 seqs prokMSA_id:60451 Beggiatoa sp. clone Limfjorden L9 prokMSA_id:73639 Beggiatoa sp. clone Dangast A9 2.28.3.4.3.8477 OTU 3 seqs prokMSA_id:60452 Beggiatoa sp. clone Limfjorden L8 prokMSA_id:60454 Beggiatoa sp. clone Limfjorden L22 prokMSA_id:60456 Beggiatoa sp. clone Limfjorden D4 2.28.3.4.3.8559 OTU 4 seqs prokMSA_id:7509 Thioploca ingrica. L40998 prokMSA_id:62226 Thioploca sp. 'Lake Constance' prokMSA_id:67230 Thioploca sp. 'Lake Biwa' prokMSA_id:70714 Thioploca ingrica L40998 2.28.3.4.3.8677 OTU 1 seq prokMSA_id:7510 Beggiatoa 'Monterey Canyon' 2.28.3.4.3.8678 OTU 1 seq prokMSA_id:7511 Beggiatoa 'Bay of Concepcion' str. Bay of Concepcion 2.28.3.4.3.8741 OTU 1 seq prokMSA_id:60455 Beggiatoa sp. clone Limfjorden L10 2.28.3.4.3.8752 OTU 1 seq prokMSA_id:81307 Beggiatoa sp. MS-81-1c 2.28.3.4.3.9015 OTU 1 seq prokMSA_id:81779 Beggiatoa alba 2.28.3.4.3.9013 OTU 1 seq prokMSA_id:7506 str. TM20 2.28.3.4.3.9321 OTU 1 seq prokMSA_id:84651 Beggiatoa sp. clone:Tokyo Bay D 2.28.3.4.3.9374 OTU 6 seqs prokMSA_id:20938 gamma YNPRH65B AF465652 prokMSA_id:25123 DGGE band YNPRH-B13 AF465671 prokMSA_id:58104 Ellin339 AF498721 prokMSA_id:63327 clone RCP1-57 AF523889 prokMSA_id:64005 clone:CF49 AB087369 prokMSA_id:73838 Ellin307 2.28.3.4.3.9510 OTU 1 seq prokMSA_id:70923 Thiomargarita namibiensis 2.28.3.4.4 THC.GELATINOSA_ASSEMBLAGE 13 seqs 2.28.3.4.4.8583 OTU 3 seqs prokMSA_id:7520 Chromatium okenii DSM 169 prokMSA_id:7521 Chromatium okenii prokMSA_id:7522 str. clone 359 2.28.3.4.4.8784 OTU 2 seqs prokMSA_id:7516 Thiocystis gelatinosa str. 2611 DSMZ 215 prokMSA_id:7517 Thiocystis gelatinosa 2.28.3.4.4.9048 OTU 1 seq prokMSA_id:78198 Allochromatium sp. AT2202 2.28.3.4.4.9078 OTU 1 seq prokMSA_id:7519 Thiocystis minor DSM 178 2.28.3.4.4.9077 OTU 1 seq prokMSA_id:7518 Thiocystis violascens DSM 198 2.28.3.4.4.9138 OTU 1 seq prokMSA_id:7523 Thiocystis violacea str. 2711 N. Pfennig DSM 207 2.28.3.4.4.9164 OTU 1 seq prokMSA_id:7525 Marichromatium PENDANT-18 2.28.3.4.4.9282 OTU 1 seq prokMSA_id:57798 clone SBRC_30 2.28.3.4.4.9610 OTU 2 seqs prokMSA_id:20680 Chromatium sp. RW prokMSA_id:22729 Chromatium sp. NM2 2.28.3.4.5 TCP.ROSEA_SUBGROUP 4 seqs 2.28.3.4.5.8546 OTU 1 seq prokMSA_id:74025 Thiocapsa sp. BM-5 2.28.3.4.5.8736 OTU 1 seq prokMSA_id:7531 Thiocapsa roseopersicina str. ML2 2.28.3.4.5.9170 OTU 1 seq prokMSA_id:7526 Thiorhodococcus minor str. HA2P ATCC 700259 2.28.3.4.5.9173 OTU 1 seq prokMSA_id:7529 str. BD1-1 2.28.3.4.6 MCH.PURPURATUM_SUBGROUP 44 seqs 2.28.3.4.6.8273 OTU 1 seq prokMSA_id:71945 Thiocapsa sp. strain 8320 2.28.3.4.6.8342 OTU 1 seq prokMSA_id:71248 Thiocapsa pfennigii 2.28.3.4.6.8346 OTU 1 seq prokMSA_id:7539 Rhabdochromatium marinum str. 8315-5 DSM 5261 2.28.3.4.6.8376 OTU 2 seqs prokMSA_id:62475 Chromatiaceae clone LA7-B30N prokMSA_id:62498 Chromatiaceae clone LA4-B63N 2.28.3.4.6.8400 OTU 3 seqs prokMSA_id:7544 clone 335 prokMSA_id:7545 clone 371. AJ006061 prokMSA_id:73594 Chromatiaceae Cad16 AJ511274 2.28.3.4.6.8399 OTU 1 seq prokMSA_id:7542 clone BPC022 2.28.3.4.6.8408 OTU 1 seq prokMSA_id:7573 Thiorhodovibrio sp 2.28.3.4.6.8412 OTU 1 seq prokMSA_id:7546 clone Sva0091 2.28.3.4.6.8449 OTU 1 seq prokMSA_id:7550 endosymbiont of Inanidrilus leukodermatus S-oxidizing 2.28.3.4.6.8451 OTU 1 seq prokMSA_id:7553 unnamed organism 2.28.3.4.6.8455 OTU 1 seq prokMSA_id:7554 Halochromatium glycolicum str. BN 3201 2.28.3.4.6.8456 OTU 1 seq prokMSA_id:7557 Halochromatium salexigens str. 6310 DSM 4395 2.28.3.4.6.8461 OTU 1 seq prokMSA_id:7559 str. Thd2 2.28.3.4.6.8479 OTU 1 seq prokMSA_id:31275 gamma MERTZ_2CM_291 2.28.3.4.6.8494 OTU 1 seq prokMSA_id:17355 gamma MERTZ_2CM_164 2.28.3.4.6.8499 OTU 1 seq prokMSA_id:7568 Marichromatium gracile str. BN 5210 DSM 203 2.28.3.4.6.8527 OTU 1 seq prokMSA_id:26490 gamma MERTZ_21CM_129 2.28.3.4.6.8526 OTU 1 seq prokMSA_id:7572 Amoebobacter purpureus str. ML1 2.28.3.4.6.8525 OTU 1 seq prokMSA_id:7571 Isochromatium ACE-31 2.28.3.4.6.8548 OTU 1 seq prokMSA_id:18791 gamma Sva1005 2.28.3.4.6.8697 OTU 1 seq prokMSA_id:77961 Thiococcus sp. AT2204 2.28.3.4.6.8735 OTU 1 seq prokMSA_id:29624 PHOS-HE54 2.28.3.4.6.8815 OTU 1 seq prokMSA_id:7560 clone SRang2.5 2.28.3.4.6.8816 OTU 1 seq prokMSA_id:7561 str. JTB148 2.28.3.4.6.8875 OTU 1 seq prokMSA_id:37395 gamma Sva0535 2.28.3.4.6.8967 OTU 1 seq prokMSA_id:42824 gamma MERTZ_2CM_204 2.28.3.4.6.9033 OTU 5 seqs prokMSA_id:7541 Lamprocystis roseopersicina DSM 229 prokMSA_id:7543 clone 136 prokMSA_id:7564 Amoebobacter purpureus str. ThSchl2 DSM 4197 prokMSA_id:7565 clone 261 prokMSA_id:7566 clone 345. AJ006060 2.28.3.4.6.9054 OTU 1 seq prokMSA_id:78112 Thiococcus sp. AT2205 2.28.3.4.6.9097 OTU 1 seq prokMSA_id:43810 Olavius algarvensis sulfur-oxidizing endosymbiont 2.28.3.4.6.9217 OTU 1 seq prokMSA_id:70247 Thiorhodovobrio winogradskyi strain 4910/06511 2.28.3.4.6.9251 OTU 3 seqs prokMSA_id:7470 Thiorhodovibrio sibirica AJ010297 prokMSA_id:7548 Thiorhodospira sibirica str. A12. AJ006530 prokMSA_id:71426 Thiococcus sp. A31 2.28.3.4.6.9418 OTU 1 seq prokMSA_id:75050 gamma clone JG37-AG-14 2.28.3.4.6.9545 OTU 2 seqs prokMSA_id:47560 gamma MERTZ_2CM_261 prokMSA_id:59789 clone BB2_140 2.28.3.4.6.9595 OTU 1 seq prokMSA_id:42746 Rhabdochromatium MT58 2.28.3.5 ACHROMATIUM_ASSEMBLAGE 178 seqs 2.28.3.5.8169 OTU 1 seq prokMSA_id:55388 clone RCP2-54 2.28.3.5.8179 OTU 1 seq prokMSA_id:39317 gamma n7d 2.28.3.5.8183 OTU 1 seq prokMSA_id:7620 unnamed organism 2.28.3.5.8213 OTU 1 seq prokMSA_id:50129 gamma MERTZ_2CM_66 2.28.3.5.8214 OTU 1 seq prokMSA_id:7629 clone BPC023 2.28.3.5.8229 OTU 1 seq prokMSA_id:7634 str. 46.m 2.28.3.5.8227 OTU 7 seqs prokMSA_id:7621 unnamed organism prokMSA_id:7622 unnamed organism prokMSA_id:81388 Endosymbiont of Escarpia laminata prokMSA_id:81446 Endosymbiont of Lamellibrachia barhami AY129091 prokMSA_id:81571 Endosymbiont of Lamellibrachia barhami prokMSA_id:81637 Endosymbiont of Escarpia laminata AY129106 prokMSA_id:82463 Endosymbiont of Lamellibrachia barhami 2.28.3.5.8234 OTU 2 seqs prokMSA_id:7639 marine snow associated clone agg47 prokMSA_id:31566 gamma KTc1113 AF235115 2.28.3.5.8243 OTU 2 seqs prokMSA_id:63759 Gamma IR prokMSA_id:65375 Selenate-reducing AK4OH1 2.28.3.5.8240 OTU 1 seq prokMSA_id:59167 Gamma RED77 2.28.3.5.8249 OTU 1 seq prokMSA_id:66569 Acidithiobacillus ferrooxidans strain DSM 2392 2.28.3.5.8261 OTU 1 seq prokMSA_id:7628 symbiont of Solemya reidi gill 2.28.3.5.8275 OTU 1 seq prokMSA_id:7641 str. Shinkai #6500 2.28.3.5.8287 OTU 1 seq prokMSA_id:7649 symbiont of Solemya velum 2.28.3.5.8285 OTU 1 seq prokMSA_id:7646 clone Sva0115 2.28.3.5.8291 OTU 1 seq prokMSA_id:49895 gamma MERTZ_0CM_220 2.28.3.5.8293 OTU 1 seq prokMSA_id:37274 Sulfur-oxidizing OBII5 2.28.3.5.8304 OTU 1 seq prokMSA_id:7642 str. JTB35 2.28.3.5.8311 OTU 1 seq prokMSA_id:7643 str. JTB254 2.28.3.5.8314 OTU 1 seq prokMSA_id:40388 gamma clone CTD27B 2.28.3.5.8324 OTU 1 seq prokMSA_id:20997 gamma MERTZ_21CM_269 2.28.3.5.8328 OTU 1 seq prokMSA_id:7650 unnamed organism 2.28.3.5.8349 OTU 2 seqs prokMSA_id:7636 clone Sva0864 prokMSA_id:7651 clone Sva0071 2.28.3.5.8354 OTU 1 seq prokMSA_id:36334 gamma MERTZ_0CM_372 2.28.3.5.8375 OTU 1 seq prokMSA_id:79838 clone ARKIA-12 2.28.3.5.8381 OTU 1 seq prokMSA_id:20074 isolate HNSS31 2.28.3.5.8382 OTU 1 seq prokMSA_id:48268 alpha MERTZ_0CM_244 2.28.3.5.8391 OTU 1 seq prokMSA_id:52144 gamma DSS54 2.28.3.5.8390 OTU 1 seq prokMSA_id:45822 gamma MERTZ_2CM_89 2.28.3.5.8397 OTU 1 seq prokMSA_id:77715 gamma clone Hyd24-13 2.28.3.5.8405 OTU 1 seq prokMSA_id:22965 gamma clone 33-FL111B98 2.28.3.5.8403 OTU 1 seq prokMSA_id:65374 Selenate-reducing KE4OH1 2.28.3.5.8423 OTU 6 seqs prokMSA_id:25316 WD235 clone WD235 prokMSA_id:46141 clone WR176 AJ233555 prokMSA_id:47916 WD260 clone WD260 AJ292673 prokMSA_id:61519 gamma clone NOS7.145WL AY043699 prokMSA_id:76527 gamma clone C47.11PG AF431379 prokMSA_id:76553 clone N29.17SM AF432807 2.28.3.5.8425 OTU 1 seq prokMSA_id:36242 SBRH70 2.28.3.5.8447 OTU 1 seq prokMSA_id:41625 gamma SA28 2.28.3.5.8472 OTU 1 seq prokMSA_id:66921 clone SHA-100 2.28.3.5.8488 OTU 1 seq prokMSA_id:84942 clone D145 2.28.3.5.8507 OTU 1 seq prokMSA_id:74333 isolate CS_B046 2.28.3.5.8512 OTU 1 seq prokMSA_id:37006 gamma B2M54 2.28.3.5.8515 OTU 1 seq prokMSA_id:39848 clone KS86 2.28.3.5.8522 OTU 1 seq prokMSA_id:51403 gamma kpj02f 2.28.3.5.8566 OTU 1 seq prokMSA_id:47907 gamma MERTZ_2CM_277 2.28.3.5.8588 OTU 1 seq prokMSA_id:43149 gamma SB21 2.28.3.5.8638 OTU 1 seq prokMSA_id:24022 Maorithyas hadalis gill thioautotophic symbiont II ssrRNA 2.28.3.5.8639 OTU 1 seq prokMSA_id:57450 gamma clone P. palm A 79 2.28.3.5.8646 OTU 1 seq prokMSA_id:78034 clone s30 2.28.3.5.8651 OTU 1 seq prokMSA_id:18389 gamma MERTZ_0CM_58 2.28.3.5.8676 OTU 1 seq prokMSA_id:37316 gamma DSS65 2.28.3.5.8675 OTU 1 seq prokMSA_id:45719 gamma MERTZ_0CM_77 2.28.3.5.8724 OTU 1 seq prokMSA_id:76026 gamma clone JG34-KF-155 2.28.3.5.8731 OTU 2 seqs prokMSA_id:7609 Achromatium JD2 prokMSA_id:7610 Achromatium JD13 2.28.3.5.8733 OTU 1 seq prokMSA_id:30959 clone KS75 2.28.3.5.8759 OTU 1 seq prokMSA_id:20176 Agricultural soil clone SC-I-87 2.28.3.5.8774 OTU 1 seq prokMSA_id:73147 gamma MERTZ_2CM_135 2.28.3.5.8791 OTU 1 seq prokMSA_id:51730 gamma MERTZ_2CM_304 2.28.3.5.8789 OTU 1 seq prokMSA_id:32932 gamma clone:TYM--7 2.28.3.5.8818 OTU 1 seq prokMSA_id:25726 gamma MERTZ_2CM_114 2.28.3.5.8817 OTU 1 seq prokMSA_id:78950 gamma clone JG30-KF-C10 2.28.3.5.8829 OTU 1 seq prokMSA_id:43949 gamma MERTZ_0CM_387 2.28.3.5.8834 OTU 1 seq prokMSA_id:7578 str. BD7-8 2.28.3.5.8832 OTU 1 seq prokMSA_id:37621 gamma MERTZ_2CM_53 2.28.3.5.8833 OTU 1 seq prokMSA_id:7577 str. Alvin #2837 2.28.3.5.8839 OTU 1 seq prokMSA_id:32189 marine ZD0408 2.28.3.5.8867 OTU 1 seq prokMSA_id:39796 Metal-contaminated soil clone K20-18 2.28.3.5.8874 OTU 2 seqs prokMSA_id:55790 isolate CS_B021 prokMSA_id:67774 isolate C1_B038 2.28.3.5.8871 OTU 2 seqs prokMSA_id:25823 clone KS59 prokMSA_id:36493 clone KS72 2.28.3.5.8882 OTU 1 seq prokMSA_id:74812 Gamma KT0813 2.28.3.5.8881 OTU 1 seq prokMSA_id:32280 Solemya terraeregina gill symbiont 2.28.3.5.8911 OTU 1 seq prokMSA_id:7600 clone BURTON-10 2.28.3.5.8920 OTU 1 seq prokMSA_id:7601 clone ACE-21 2.28.3.5.8926 OTU 1 seq prokMSA_id:79212 sequences clone: IheB2-13 2.28.3.5.8941 OTU 1 seq prokMSA_id:7606 symbiont of Lucina pectinata gill 2.28.3.5.8942 OTU 2 seqs prokMSA_id:7607 Achromatium minus. AJ010595 prokMSA_id:7608 Achromatium minus 2.28.3.5.8957 OTU 1 seq prokMSA_id:45930 gamma Arctic97C-5 2.28.3.5.8960 OTU 1 seq prokMSA_id:41892 gamma MERTZ_2CM_55 2.28.3.5.8971 OTU 2 seqs prokMSA_id:17654 Agricultural soil clone SC-I-47 AJ252637 prokMSA_id:34477 Agricultural soil clone SC-I-85 2.28.3.5.8985 OTU 1 seq prokMSA_id:26590 gamma MERTZ_2CM_252 2.28.3.5.8982 OTU 3 seqs prokMSA_id:7591 Achromatium oxaliferum prokMSA_id:7592 Achromatium oxaliferum prokMSA_id:7595 Achromatium HK9 2.28.3.5.8990 OTU 1 seq prokMSA_id:42308 clone 2.28.3.5.8998 OTU 1 seq prokMSA_id:7614 str. BD2-7 2.28.3.5.9007 OTU 3 seqs prokMSA_id:37302 Thiothrix sp. EJ1M-B prokMSA_id:38006 Thiothrix sp. EJ2M-B prokMSA_id:43018 Thiothrix sp. SNR-3 2.28.3.5.9018 OTU 1 seq prokMSA_id:48991 gamma MERTZ_2CM_279 2.28.3.5.9022 OTU 1 seq prokMSA_id:7619 str. Alvin #2839 2.28.3.5.9021 OTU 1 seq prokMSA_id:7618 str. KI89C 2.28.3.5.9051 OTU 1 seq prokMSA_id:70339 Sulfur-oxidizing NDII1.2 2.28.3.5.9052 OTU 1 seq prokMSA_id:78110 clone s18 2.28.3.5.9086 OTU 1 seq prokMSA_id:7580 symbiont of Solemya reidi 2.28.3.5.9094 OTU 1 seq prokMSA_id:35114 clone SL6 2.28.3.5.9090 OTU 1 seq prokMSA_id:7585 symbiont of Anodontia phillipiana bivalve mollusc gill 2.28.3.5.9107 OTU 2 seqs prokMSA_id:7583 symbiont of Lucina floridana gill prokMSA_id:7640 symbiont of Codakia costata gill 2.28.3.5.9105 OTU 1 seq prokMSA_id:37275 sponge symbiont JAWS6 2.28.3.5.9114 OTU 1 seq prokMSA_id:7593 Achromatium JD1 2.28.3.5.9120 OTU 1 seq prokMSA_id:17560 clone KS90 2.28.3.5.9119 OTU 1 seq prokMSA_id:7594 Achromatium JD8 2.28.3.5.9128 OTU 1 seq prokMSA_id:7617 symbiont of Lucina nassula 2.28.3.5.9124 OTU 1 seq prokMSA_id:69316 gamma clone DC8-80-1 2.28.3.5.9125 OTU 1 seq prokMSA_id:7596 Achromatium HK13 2.28.3.5.9129 OTU 1 seq prokMSA_id:40146 gamma B2M23 2.28.3.5.9130 OTU 1 seq prokMSA_id:7598 symbiont of Codakia orbicularis gill 2.28.3.5.9155 OTU 1 seq prokMSA_id:27330 gamma MERTZ_2CM_110 2.28.3.5.9178 OTU 6 seqs prokMSA_id:7602 Achromatium HK3 prokMSA_id:7603 Achromatium HK6 prokMSA_id:7604 Achromatium HK24 prokMSA_id:7611 Achromatium HK1. AF129552 prokMSA_id:7612 Achromatium HK2 prokMSA_id:7613 Achromatium HK15 2.28.3.5.9187 OTU 1 seq prokMSA_id:52794 gamma MERTZ_0CM_113 2.28.3.5.9195 OTU 1 seq prokMSA_id:24728 gamma MERTZ_2CM_182 2.28.3.5.9220 OTU 7 seqs prokMSA_id:81173 Endosymbiont of Escarpia laminata AY129108 prokMSA_id:81211 Endosymbiont of Lamellibrachia sp. 1 prokMSA_id:81526 Endosymbiont of Lamellibrachia barhami prokMSA_id:81727 Endosymbiont of Lamellibrachia barhami prokMSA_id:81952 Endosymbiont of Escarpia laminata prokMSA_id:82094 Endosymbiont of Escarpia laminata AY129109 prokMSA_id:82451 Endosymbiont of Lamellibrachia barhami 2.28.3.5.9229 OTU 1 seq prokMSA_id:18424 Thiobacillus prosperus 2.28.3.5.9278 OTU 1 seq prokMSA_id:41685 gamma MERTZ_2CM_265 2.28.3.5.9317 OTU 1 seq prokMSA_id:38399 gamma MERTZ_2CM_167 2.28.3.5.9315 OTU 1 seq prokMSA_id:37738 ECS42 2.28.3.5.9316 OTU 1 seq prokMSA_id:34593 gamma ARCT1-45 2.28.3.5.9338 OTU 1 seq prokMSA_id:23199 gamma MERTZ_2CM_300 2.28.3.5.9354 OTU 1 seq prokMSA_id:76053 gamma clone JG37-AG-87 2.28.3.5.9356 OTU 1 seq prokMSA_id:34480 gamma SA50 2.28.3.5.9387 OTU 1 seq prokMSA_id:7616 clone Sva1046 2.28.3.5.9396 OTU 1 seq prokMSA_id:72638 Sulfur-oxidizing OAII2 2.28.3.5.9394 OTU 1 seq prokMSA_id:59790 clone BB2_230 2.28.3.5.9413 OTU 1 seq prokMSA_id:83295 clone CCM19a 2.28.3.5.9434 OTU 1 seq prokMSA_id:31156 gamma MERTZ_0CM_330 2.28.3.5.9452 OTU 1 seq prokMSA_id:7586 Dechloromarinus chlorophilus str. NSS 2.28.3.5.9456 OTU 1 seq prokMSA_id:7587 str. JTB23 2.28.3.5.9461 OTU 1 seq prokMSA_id:45103 PENDANT-13 2.28.3.5.9482 OTU 1 seq prokMSA_id:43943 gamma MERTZ_0CM_369 2.28.3.5.9485 OTU 1 seq prokMSA_id:7599 clone HstpL26 2.28.3.5.9492 OTU 1 seq prokMSA_id:24359 gamma MERTZ_21CM_112 2.28.3.5.9490 OTU 1 seq prokMSA_id:36950 gamma clone R13 2.28.3.5.9521 OTU 1 seq prokMSA_id:49500 gamma MERTZ_0CM_85 2.28.3.5.9524 OTU 1 seq prokMSA_id:48069 gamma MERTZ_0CM_211 2.28.3.5.9531 OTU 1 seq prokMSA_id:17992 marine ZD0417 2.28.3.5.9544 OTU 1 seq prokMSA_id:53877 gamma MERTZ_21CM_103 2.28.3.5.9549 OTU 1 seq prokMSA_id:31454 gamma B2M60 2.28.3.5.9555 OTU 1 seq prokMSA_id:42118 gamma TK12 2.28.3.5.9556 OTU 6 seqs prokMSA_id:81502 Endosymbiont of Seepiophila jonesi prokMSA_id:81773 Endosymbiont of Lamellibrachia sp. 2 prokMSA_id:81896 Endosymbiont of Seepiophila jonesi AY129087 prokMSA_id:82009 Endosymbiont of Seepiophila jonesi prokMSA_id:82064 Endosymbiont of Seepiophila jonesi prokMSA_id:82292 Endosymbiont of Lamellibrachia sp. 2 2.28.3.5.9559 OTU 1 seq prokMSA_id:67775 isolate C1_B021 2.28.3.5.9574 OTU 1 seq prokMSA_id:32355 gamma clone Ebpr13 2.28.3.5.9577 OTU 1 seq prokMSA_id:24814 gamma B2M61 2.28.3.5.9583 OTU 1 seq prokMSA_id:44804 gamma clone:TYM--8 2.28.3.5.9596 OTU 1 seq prokMSA_id:34312 gamma SB09 2.28.3.5.9605 OTU 1 seq prokMSA_id:42463 MS11 2.28.3.5.9609 OTU 1 seq prokMSA_id:48635 gamma clone 123 2.28.3.6 FRANCISELLA_GROUP 106 seqs 2.28.3.6.1 THTX.NIVEA_SUBGROUP 20 seqs 2.28.3.6.1.8176 OTU 5 seqs prokMSA_id:18561 Thiothrix eikelboomii strain:COM-A AB042542 prokMSA_id:19111 Thiothrix eikelboomii strain:T2-1 AB042541 prokMSA_id:39802 Thiothrix eikelboomii strain:KR-A prokMSA_id:43111 Thiothrix eikelboomii prokMSA_id:46905 Thiothrix eikelboomii strain:T1-4 AB042540 2.28.3.6.1.8221 OTU 7 seqs prokMSA_id:18257 Thiothrix sp. B2-8 AB042537 prokMSA_id:29316 Thiothrix sp. OS-F AB042538 prokMSA_id:30988 Thiothrix sp. B2-7 AB042534 prokMSA_id:31294 Thiothrix sp. B5-1 AB042536 prokMSA_id:34556 Thiothrix sp. B3-1 prokMSA_id:47122 Thiothrix sp. SCM-A AB042535 prokMSA_id:71364 Thiothrix sp. B4-1 2.28.3.6.1.8264 OTU 1 seq prokMSA_id:38771 Leucothrix kpa90rc 2.28.3.6.1.8332 OTU 1 seq prokMSA_id:7652 Leucothrix mucor 2.28.3.6.1.8355 OTU 1 seq prokMSA_id:7656 Thiothrix ramosa 2.28.3.6.1.8353 OTU 1 seq prokMSA_id:7655 Thiothrix nivea str. JP2 DSM 5205 2.28.3.6.1.8804 OTU 3 seqs prokMSA_id:29860 mRNA clone sipK4 AJ307933 prokMSA_id:82296 Thiothrix sp. clone BIOEST-42 AJ548931 prokMSA_id:86244 gamma clone LKC2.127-27 2.28.3.6.1.9189 OTU 1 seq prokMSA_id:18746 Thiothrix sp. CT3 2.28.3.6.2 CALYPTOGENA_SYMBIONTS_SUBGROUP 24 seqs 2.28.3.6.2.8357 OTU 1 seq prokMSA_id:7659 symbiont of mussel thioautotrophic gill 2.28.3.6.2.8383 OTU 1 seq prokMSA_id:7660 symbiont of Vesicomya chordata gill 2.28.3.6.2.8424 OTU 1 seq prokMSA_id:7675 symbiont of Calyptogena elongata gill 2.28.3.6.2.8605 OTU 15 seqs prokMSA_id:7662 unnamed organism. AF035722 prokMSA_id:7664 unnamed organism prokMSA_id:7669 unnamed organism prokMSA_id:7670 unnamed organism prokMSA_id:7671 symbiont of Calyptogena sp. L25708 prokMSA_id:7672 unnamed organism prokMSA_id:7674 unnamed organism prokMSA_id:7676 unnamed organism. AF035719 prokMSA_id:39558 marine ZD0405 prokMSA_id:67478 Endosymbiont of Bathymodiolus sp prokMSA_id:67479 Endosymbiont of Calyptogena laubieri prokMSA_id:79242 clone ZA2525c AF382104 prokMSA_id:79277 clone ZA2329c AF382101 prokMSA_id:79347 clone ZA2514c prokMSA_id:90283 Endosymbiont of Calyptogena packardana AY310508 2.28.3.6.2.8654 OTU 1 seq prokMSA_id:79550 sequences clone: IheB2-31 2.28.3.6.2.8953 OTU 1 seq prokMSA_id:45202 gamma Arctic96BD-19 2.28.3.6.2.8961 OTU 1 seq prokMSA_id:7673 symbiont of Calyptogena magnifica 2.28.3.6.2.8965 OTU 1 seq prokMSA_id:7677 symbiont of Bathymodiolus thermophilus gill 2.28.3.6.2.8966 OTU 1 seq prokMSA_id:21943 Maorithyas hadalis gill thioautotophic symbiont I ssrRNA 2.28.3.6.2.9474 OTU 1 seq prokMSA_id:41094 Bathymodiolus septemdierum thioautotrophic gill symbiont 2.28.3.6.3 TMS.FRISIA_SUBGROUP 28 seqs 2.28.3.6.3.8452 OTU 1 seq prokMSA_id:7680 Hydrogenovibrio marinus str. MH-110 JCM 7688 2.28.3.6.3.8498 OTU 1 seq prokMSA_id:7692 Thiomicrospira SL-1 str. SL-1 2.28.3.6.3.8500 OTU 1 seq prokMSA_id:7695 Thiomicrospira kuenenii str. JB-A1 2.28.3.6.3.8501 OTU 1 seq prokMSA_id:7696 Thiomicrospira chilensis str. Ch-1 2.28.3.6.3.8623 OTU 2 seqs prokMSA_id:7691 Thiomicrospira sp. str. MA2-6 prokMSA_id:7693 clone SB-3 2.28.3.6.3.8664 OTU 2 seqs prokMSA_id:7698 Thiomicrospira Milos-T2 str. Milos-T2 prokMSA_id:7700 Thiomicrospira sp. str. Milos T-2 2.28.3.6.3.8806 OTU 1 seq prokMSA_id:72885 DS-1 2.28.3.6.3.8845 OTU 2 seqs prokMSA_id:62494 Piscirickettsia group clone LA1-B44N prokMSA_id:62496 Piscirickettsia group clone LA7-B48N 2.28.3.6.3.9006 OTU 2 seqs prokMSA_id:7681 Thiomicrospira Milos-T1 str. Milos-T1. AJ237757 prokMSA_id:7682 Thiomicrospira sp. str. Milos T-1 2.28.3.6.3.9027 OTU 6 seqs prokMSA_id:7683 Thiomicrospira sp. str. L12 prokMSA_id:7687 Thiomicrospira L-12 str. L-12 prokMSA_id:7688 Thiomicrospira crunogena str. XCL-2 prokMSA_id:7689 Thiomicrospira crunogena str. MA-3 ATCC 700270 prokMSA_id:7690 Thiomicrospira JB-B2 str. JB-B2 prokMSA_id:75896 Thiomicrospira crunogena isolate HY-62 2.28.3.6.3.9299 OTU 4 seqs prokMSA_id:23549 Thiomicrospira sp. Tms-MPN/4-6 mm depth prokMSA_id:70822 Thiomicrospira sp. Tms-MPN/10-12 mm depth prokMSA_id:71356 Thiomicrospira sp. Tms-MPN/22-24 mm depth AJ011072 prokMSA_id:72319 Thiomicrospira sp. Tms-MPN/14-16 mm depth AJ011071 2.28.3.6.3.9405 OTU 1 seq prokMSA_id:44251 gamma Arctic96AD-9 2.28.3.6.3.9557 OTU 1 seq prokMSA_id:61883 gamma clone R76-B23 2.28.3.6.3.9652 OTU 3 seqs prokMSA_id:7697 Thiomicrospira frisia str. JB-A2 prokMSA_id:7699 Thiomicrospira Art-3 str. Art-3 prokMSA_id:82186 clone KM53 2.28.3.6.4 TMS.THYASIRAE_SUBGROUP 6 seqs 2.28.3.6.4.8799 OTU 1 seq prokMSA_id:7706 Thiomicrospira thyasirae str. TG-2 DSM 5322 2.28.3.6.4.8849 OTU 1 seq prokMSA_id:62732 gamma clone ML617.5J-13 2.28.3.6.4.9352 OTU 1 seq prokMSA_id:7704 Thioalcalomicrobium sibericum str. AL7 2.28.3.6.4.9362 OTU 3 seqs prokMSA_id:7702 Thiomicrospira thyasirae str. TG-2 DSM 5322 prokMSA_id:7705 Thiomicrospira JB-A1F str. JB-A1F prokMSA_id:75723 gamma clone Gitt-KF-166 2.28.3.6.5 MP.MARINA_SUBGROUP 21 seqs 2.28.3.6.5.8595 OTU 1 seq prokMSA_id:81639 Dibenzofuran-degrading DBF-MAK 2.28.3.6.5.8644 OTU 2 seqs prokMSA_id:7719 Methylophaga thalassica ATCC 33146 prokMSA_id:7720 Methylophaga sulfidovorans str. RB-1; 94-792 LMD 95.210 . X9 2.28.3.6.5.9271 OTU 10 seqs prokMSA_id:7709 Cycloclasticus G str. G prokMSA_id:7710 Cycloclasticus E str. E prokMSA_id:7711 Cycloclasticus W str. W prokMSA_id:7712 Cycloclasticus oligotrophus prokMSA_id:7713 Cycloclasticus N3-PA321 str. N3-PA321 prokMSA_id:19033 Cycloclasticus spirillensus prokMSA_id:56290 Cycloclasticus sp. E3 prokMSA_id:61169 Cycloclasticus sp. H4 prokMSA_id:61170 Cycloclasticus sp. E2 prokMSA_id:61177 Cycloclasticus sp. A5 AB080111 2.28.3.6.5.9291 OTU 2 seqs prokMSA_id:66020 Methylophaga alcalica prokMSA_id:86185 Methylophaga buryatica 2.28.3.6.5.9303 OTU 1 seq prokMSA_id:80637 clone ARKIA-123 2.28.3.6.5.9392 OTU 3 seqs prokMSA_id:61960 Methylophaga sp. V4.MO.19 prokMSA_id:71369 Methylophaga sp. V4.ME.29 prokMSA_id:71631 Methylophaga sp. V4.MS.17 2.28.3.6.5.9538 OTU 1 seq prokMSA_id:7718 clone HstpL93 2.28.3.6.5.9536 OTU 1 seq prokMSA_id:7715 clone FL5 2.28.3.6.6 FNC.TULARENSIS_SUBGROUP 7 seqs 2.28.3.6.6.8692 OTU 5 seqs prokMSA_id:7733 Piscirickettsia salmonis str. LF-89 prokMSA_id:7734 Piscirickettsia salmonis str. ATL-4-91. U36915 prokMSA_id:7735 Piscirickettsia salmonis str. EM-90 prokMSA_id:7736 Piscirickettsia salmonis str. NOR-92 prokMSA_id:71348 Piscirickettsia salmonis complete 2.28.3.6.6.9180 OTU 1 seq prokMSA_id:7757 Francisella tularensis subsp. tularensis str. lvs ATCC 6223 2.28.3.6.6.9554 OTU 1 seq prokMSA_id:26984 Tilapia parasite TPT-541 2.28.3.7 DICHELOBACTER_GROUP 21 seqs 2.28.3.7.8231 OTU 1 seq prokMSA_id:78828 gamma clone JG30a-KF-21 2.28.3.7.8536 OTU 2 seqs prokMSA_id:7763 Cardiobacterium hominis ATCC 15826 prokMSA_id:7766 Cardiobacterium A str. AB 2167 2.28.3.7.8704 OTU 1 seq prokMSA_id:7760 clone BPC028 2.28.3.7.8721 OTU 1 seq prokMSA_id:7764 clone v1 2.28.3.7.8756 OTU 1 seq prokMSA_id:7759 Thiobacillus sp. str. W5 2.28.3.7.8765 OTU 1 seq prokMSA_id:7765 Cardiobacterium B str. AB 2168 2.28.3.7.8823 OTU 2 seqs prokMSA_id:84768 clone CCD9 prokMSA_id:85458 clone CCU5 2.28.3.7.8857 OTU 2 seqs prokMSA_id:7768 Dichelobacter nodosus prokMSA_id:7769 Dichelobacter nodosus str. 198A ATCC 27521 2.28.3.7.8884 OTU 1 seq prokMSA_id:66337 Halothiobacillus sp. RA13 2.28.3.7.9153 OTU 1 seq prokMSA_id:19288 Halothiobacillus kellyi 2.28.3.7.9181 OTU 1 seq prokMSA_id:44985 Thiobacillus neapolitanus DSM 581 2.28.3.7.9306 OTU 3 seqs prokMSA_id:7758 Thiobacillus hydrothermalis str. R3 DSM 7121 prokMSA_id:19960 Thiobacillus sp. MS02 prokMSA_id:76987 Halothiobacillus hydrothermalis isolate HY-66 2.28.3.7.9441 OTU 2 seqs prokMSA_id:7761 Thiobacillus halophilus prokMSA_id:62497 Chromatiaceae clone LAS-B37N 2.28.3.7.9448 OTU 1 seq prokMSA_id:66599 Halothiobacillus sp. WJ18 2.28.3.7.9453 OTU 1 seq prokMSA_id:65940 Cardiobacterium valvarum 2.28.3.8 XANTHOMONAS_GROUP 353 seqs 2.28.3.8.1 NV.RAMOSA_SUBGROUP 26 seqs 2.28.3.8.1.8238 OTU 1 seq prokMSA_id:51220 WD280 clone WD280 2.28.3.8.1.8339 OTU 7 seqs prokMSA_id:29007 rape rhizosphere wr0008 prokMSA_id:46403 WD284 clone WD284 prokMSA_id:65452 clone a13140 prokMSA_id:65456 clone a13133 prokMSA_id:65459 clone a13128 AY102326 prokMSA_id:65468 clone a13109 prokMSA_id:77626 gamma clone:APe4_56 2.28.3.8.1.8360 OTU 1 seq prokMSA_id:17673 gamma MN 154.3 isolate MN 154.3 2.28.3.8.1.8411 OTU 1 seq prokMSA_id:24744 gamma GR-296.I.104 2.28.3.8.1.8532 OTU 1 seq prokMSA_id:76705 gamma clone JG36-TzT-191 2.28.3.8.1.8585 OTU 3 seqs prokMSA_id:7774 str. rJ4 prokMSA_id:7775 str. rJ5 prokMSA_id:7776 str. LX1 2.28.3.8.1.8847 OTU 3 seqs prokMSA_id:7771 Nevskia ramosa str. Soe1 DSM 11499 prokMSA_id:7772 Nevskia ramosa prokMSA_id:7773 Nevskia ramosa str. OL1 2.28.3.8.1.8943 OTU 1 seq prokMSA_id:82757 clone CCM14b 2.28.3.8.1.9053 OTU 1 seq prokMSA_id:19213 2.28.3.8.1.9167 OTU 1 seq prokMSA_id:78320 gamma clone:APe4_38 2.28.3.8.1.9403 OTU 1 seq prokMSA_id:36572 clone t002 2.28.3.8.1.9458 OTU 1 seq prokMSA_id:75633 gamma clone JG37-AG-94 2.28.3.8.1.9459 OTU 2 seqs prokMSA_id:49006 clone t041 prokMSA_id:49267 clone t022 2.28.3.8.1.9590 OTU 2 seqs prokMSA_id:29157 Lake Michigan sediment LMBA45 prokMSA_id:32297 Lake Michigan sediment LMBA45 2.28.3.8.2 RHN.LINDANICLASTICUS_SUBGROUP 63 seqs 2.28.3.8.2.8210 OTU 1 seq prokMSA_id:16767 Pietermaritzburg Y17-8 2.28.3.8.2.8241 OTU 1 seq prokMSA_id:21240 gamma clone BIsii4 2.28.3.8.2.8271 OTU 1 seq prokMSA_id:50142 mRNA clone sipK9 2.28.3.8.2.8325 OTU 1 seq prokMSA_id:81595 clone KD2-145 2.28.3.8.2.8482 OTU 1 seq prokMSA_id:17177 Gamma A40-1 2.28.3.8.2.8518 OTU 1 seq prokMSA_id:20263 Arsenic resistant soil 7-03 2.28.3.8.2.8620 OTU 1 seq prokMSA_id:43741 GR-Sh1-148 clone GR-Sh1-148 2.28.3.8.2.8689 OTU 31 seqs prokMSA_id:26239 Gamma S-N1-6B AB074730 prokMSA_id:31970 Rhodanobacter sp. D46 AF250415 prokMSA_id:39014 Gamma S-N2-25A AB074734 prokMSA_id:63037 Denitrifying JA2 AY122309 prokMSA_id:63045 Denitrifying JA1 AY122297 prokMSA_id:63047 Denitrifying IA1 AY122296 prokMSA_id:68655 clone KRA30-20 AY081991 prokMSA_id:71415 Fulvimonas soli strain LMG 19981T prokMSA_id:74583 Denitrifying LA2 AY122310 prokMSA_id:77470 gamma pIF16S1-2 AY139001 prokMSA_id:77578 gamma clone:APe2_19 AB074599 prokMSA_id:78230 gamma clone:APe2_13 AB074598 prokMSA_id:81095 clone KD9-60 prokMSA_id:81116 clone KD9-21 AY218663 prokMSA_id:81191 clone KD8-79 AY218693 prokMSA_id:81358 clone KD7-52 prokMSA_id:81396 clone KD8-97 AY218698 prokMSA_id:81522 clone KD9-56 prokMSA_id:81676 clone KD5-100 prokMSA_id:81711 clone KD5-9 AY218742 prokMSA_id:81832 clone KD9-164 AY218660 prokMSA_id:81880 clone KD6-1 prokMSA_id:82101 clone KD3-139 prokMSA_id:82208 clone KD6-121 AY218750 prokMSA_id:82232 clone KD7-103 prokMSA_id:82238 clone KD5-73 prokMSA_id:82264 clone KD9-127 AY218655 prokMSA_id:82308 clone KD9-70 AY218675 prokMSA_id:82392 clone KD9-126 AY218654 prokMSA_id:82446 clone KD7-5 AY218712 prokMSA_id:83501 clone ABLCf21 2.28.3.8.2.8717 OTU 1 seq prokMSA_id:50262 Frateuria sp. NO-16 2.28.3.8.2.8793 OTU 1 seq prokMSA_id:7780 Frateuria aurantia IFO 3245 2.28.3.8.2.8794 OTU 1 seq prokMSA_id:7781 clone BURTON-35 2.28.3.8.2.8807 OTU 1 seq prokMSA_id:7777 Rhodanobacter lindaniclasticus str. RP5557 LMG 18385 2.28.3.8.2.8824 OTU 1 seq prokMSA_id:7778 clone TRA5-3 2.28.3.8.2.8909 OTU 1 seq prokMSA_id:80066 clone KD4-116 2.28.3.8.2.9001 OTU 1 seq prokMSA_id:28808 Pietermaritzburg Y14-2 2.28.3.8.2.9045 OTU 1 seq prokMSA_id:67341 Rhodanobacter sp. BPC1 2.28.3.8.2.9160 OTU 1 seq prokMSA_id:81447 clone KD6-7 2.28.3.8.2.9211 OTU 1 seq prokMSA_id:81089 clone KD8-80 2.28.3.8.2.9277 OTU 1 seq prokMSA_id:79105 clone KD8-68 2.28.3.8.2.9281 OTU 1 seq prokMSA_id:26701 gamma clone BIci4 2.28.3.8.2.9284 OTU 1 seq prokMSA_id:34580 gamma clone BIhiii13 2.28.3.8.2.9319 OTU 8 seqs prokMSA_id:79255 clone KD5-58 prokMSA_id:79780 clone KD3-82 prokMSA_id:79852 clone KD1-149 prokMSA_id:81132 clone KD6-20 prokMSA_id:81196 clone KD6-83 prokMSA_id:81363 clone KD7-89 prokMSA_id:81461 clone KD9-36 prokMSA_id:82402 clone KD8-16 2.28.3.8.2.9330 OTU 1 seq prokMSA_id:79383 Swingsiella fulva 2.28.3.8.2.9332 OTU 1 seq prokMSA_id:66606 Gamma WJ2 2.28.3.8.2.9379 OTU 1 seq prokMSA_id:82442 clone KD3-39 2.28.3.8.2.9644 OTU 1 seq prokMSA_id:82320 clone KD2-87 2.28.3.8.4 LYB.ANTIBIOTICUS_SUBGROUP 45 seqs 2.28.3.8.4.8392 OTU 1 seq prokMSA_id:81039 clone KD2-14 2.28.3.8.4.8414 OTU 1 seq prokMSA_id:81488 clone KD5-24 2.28.3.8.4.8925 OTU 2 seqs prokMSA_id:25970 gamma clone SM2E06 prokMSA_id:44041 gamma clone SM1E08 2.28.3.8.4.8972 OTU 1 seq prokMSA_id:75877 gamma clone S15A-MN135 2.28.3.8.4.8983 OTU 16 seqs prokMSA_id:7783 Pele's Vents clone PVB_25 prokMSA_id:7784 Pele's Vents clone PVB_3 PVB_5 prokMSA_id:7785 str. N4-7 prokMSA_id:7786 str. ES-1 prokMSA_id:7788 Xanthomonas sp. str. AK prokMSA_id:7789 Pele's Vents clone PVB_47. U15113 prokMSA_id:7790 Lysobacter antibioticus str. Ly a2 DSM 2044 prokMSA_id:20839 Soil S65D1 prokMSA_id:27494 Lysobacter sp. C3 prokMSA_id:35183 clone UASB_brew_B36 AF332715 prokMSA_id:52059 Lysobacter enzymogenes strain DSM 2043T prokMSA_id:59175 Beta KIN190 AY136098 prokMSA_id:60837 clone SG2-145 prokMSA_id:61184 Lysobacter sp. IB-9374 prokMSA_id:73870 Xanthomonas sp. 1018 prokMSA_id:93932 gamma- clone Gitt-GS-126 AJ582198 2.28.3.8.4.9031 OTU 1 seq prokMSA_id:59535 Enrichment culture LB-P clone LB-P 2.28.3.8.4.9040 OTU 1 seq prokMSA_id:40248 clone t027 2.28.3.8.4.9055 OTU 2 seqs prokMSA_id:7792 Xanthomonas ML-122 str. ML-122 prokMSA_id:50378 Xanthomonas sp. ML-168b 2.28.3.8.4.9241 OTU 3 seqs prokMSA_id:66232 Thermomonas haemolytica isolate TG15 prokMSA_id:76111 Thermomonas fusca strain LMG 21739 prokMSA_id:76350 Thermomonas fusca strain LMG 21738 2.28.3.8.4.9259 OTU 2 seqs prokMSA_id:17521 Lysobacter sp. XL1 prokMSA_id:83249 Lysobacter sp. 2CBAB 2.28.3.8.4.9320 OTU 5 seqs prokMSA_id:60986 clone a13161 prokMSA_id:65454 clone a13138 prokMSA_id:65466 clone a13112 AY102319 prokMSA_id:65469 clone a13106 prokMSA_id:74443 gamma clone BIyi3 AJ318204 2.28.3.8.4.9426 OTU 1 seq prokMSA_id:7791 str. rJ15 2.28.3.8.4.9449 OTU 1 seq prokMSA_id:7793 Luteimonas mephitis str. B1953/27.1 2.28.3.8.4.9464 OTU 1 seq prokMSA_id:72899 candidate division BD clone BDfull1 2.28.3.8.4.9623 OTU 2 seqs prokMSA_id:39084 gamma clone SM1E05 prokMSA_id:39919 gamma clone SM1E04 2.28.3.8.4.9639 OTU 5 seqs prokMSA_id:66233 Thermomonas haemolytica isolate TJ7 prokMSA_id:66235 Thermomonas haemolytica isolate S5 prokMSA_id:66236 Thermomonas haemolytica isolate S2 prokMSA_id:66237 Thermomonas haemolytica isolate N22 prokMSA_id:66239 Thermomonas haemolytica isolate N4 2.28.3.8.5 STE.MALTOPHILIA_SUBGROUP 148 seqs 2.28.3.8.5.8541 OTU 1 seq prokMSA_id:60330 clone Phe2 2.28.3.8.5.8577 OTU 144 seqs prokMSA_id:7795 Stenotrophomonas africae str. MGB prokMSA_id:7800 Stenotrophomonas maltophilia str. N4-15 prokMSA_id:7801 Pseudomonas pictorum ATCC 23328. AB021392 prokMSA_id:7803 Pseudomonas hibiscicola ATCC 19867 prokMSA_id:7806 Stenotrophomonas sp. Y13836 prokMSA_id:7807 Stenotrophomonas maltophilia LMG 957 prokMSA_id:7808 Stenotrophomonas maltophilia LMG 10991 prokMSA_id:7809 Stenotrophomonas maltophilia LMG 981. AJ131116 prokMSA_id:7810 Stenotrophomonas maltophilia str. VUN 10 010 prokMSA_id:7811 Stenotrophomonas maltophilia str. VUN 10 012 prokMSA_id:7812 Stenotrophomonas nitritireducens str. L2. AJ012229 prokMSA_id:7813 Stenotrophomonas nitritireducens str. B1910/29.1 prokMSA_id:7815 Stenotrophomonas maltophilia LMG 11114 prokMSA_id:7816 Stenotrophomonas maltophilia str. BL prokMSA_id:7819 Stenotrophomonas maltophilia LMG 10879 prokMSA_id:7820 Stenotrophomonas maltophilia LMG 10882. AJ131905 prokMSA_id:7821 Stenotrophomonas maltophilia LMG 10883. AJ131906 prokMSA_id:7822 Stenotrophomonas maltophilia LMG 10989 prokMSA_id:7826 Stenotrophomonas maltophilia ATCC 13637 prokMSA_id:7828 Stenotrophomonas maltophilia str. VUN10075 prokMSA_id:7829 Stenotrophomonas maltophilia LMG 10851 prokMSA_id:7834 Stenotrophomonas maltophilia LMG 10853. AJ131914 prokMSA_id:7856 Xanthomonas bromi LMG 947 prokMSA_id:7857 Xanthomonas vesicatoria LMG 911 prokMSA_id:7858 Xanthomonas oryzae LMG 5047 prokMSA_id:7861 Xanthomonas populi LMG 5743 prokMSA_id:7862 Xanthomonas sacchari LMG 471 . Y10766 prokMSA_id:7866 Xanthomonas pisi LMG 847 prokMSA_id:7869 Xanthomonas fragariae LMG 708 prokMSA_id:7871 Xanthomonas axonopodis LMG 538 prokMSA_id:7872 Xanthomonas campestris LMG 568 prokMSA_id:7874 Xanthomonas campestris pv. campestris AF188831 prokMSA_id:7876 Xanthomonas campestris str. Xc17 prokMSA_id:7878 Xanthomonas melonis LMG 8670 prokMSA_id:7879 Xanthomonas translucens LMG 876 prokMSA_id:7880 Xanthomonas campestris LMG 726 prokMSA_id:7883 Xanthomonas codiaei LMG 8678 prokMSA_id:7887 Xanthomonas arboricola LMG 747 . Y10757 prokMSA_id:7888 Xanthomonas cucurbitae str. LMG prokMSA_id:7889 Xanthomonas hyacinthi LMG 739 prokMSA_id:7890 Xanthomonas cassavae LMG 673 prokMSA_id:7891 Xanthomonas theicola LMG 8684 prokMSA_id:7892 Xanthomonas hortorum LMG 733 . Y10759 prokMSA_id:7894 Xanthomonas albilineans LMG 494 prokMSA_id:7896 Xanthomonas vasicola LMG 736 prokMSA_id:7897 Xanthomonas campestris str. L2 prokMSA_id:7898 Pseudomonas cissicola ATCC 33616 prokMSA_id:7901 Xanthomonas campestris LMG 682 prokMSA_id:16822 Xanthomonas cynarae prokMSA_id:16875 clone GL178.1 prokMSA_id:17727 Pseudoxanthomonas sp. M1-2 AB039329 prokMSA_id:17961 Stenotrophomonas sp. 3A3C AF368754 prokMSA_id:18200 Stenotrophomonas maltophilia clone IrT-JG14-12 prokMSA_id:18402 Stenotrophomonas maltophilia isolate VUN10075 prokMSA_id:18889 clone GL182.12 prokMSA_id:20575 clone GL182.13 prokMSA_id:22089 Stenotrophomonas sp. clone KL-59-7-5 prokMSA_id:22707 gamma clone BIgi7 prokMSA_id:22966 beta clone KL-15-2-16 prokMSA_id:23220 Stenotrophomonas maltophilia strain e-a22 prokMSA_id:27006 Xanthomonas sp. oral clone AY088 AF385546 prokMSA_id:29468 Xanthomonas sp. 36A prokMSA_id:31789 Pseudoxanthomonas taiwanensis strain CB-225 prokMSA_id:34396 Stenotrophomonas maltophilia isolate VUN10035 prokMSA_id:36460 clone GL178.11 prokMSA_id:38163 Stenotrophomonas acidaminiphila AF273079 prokMSA_id:38863 clone GL178.2 prokMSA_id:38887 Stenotrophomonas maltophilia prokMSA_id:39016 Gamma S-Nnd-23A AB074736 prokMSA_id:39908 clone GL184.10 prokMSA_id:40651 Stenotrophomonas sp. LMG 19833 strain LMG 19833 AJ300772 prokMSA_id:41363 beta clone KL-59-7-1 prokMSA_id:43081 Gamma S-A2-11 AB074713 prokMSA_id:43218 Stenotrophomonas maltophilia strain c5 prokMSA_id:43406 Stenotrophomonas acidaminiphila AF273080 prokMSA_id:43441 Blackwater bioreactor BW3 prokMSA_id:43546 Stenotrophomonas maltophilia strain c6 prokMSA_id:45132 clone GL182.22 prokMSA_id:45466 clone GL184.24 prokMSA_id:45548 Stenotrophomonas maltophilia strain e-p19 prokMSA_id:46966 Stenotrophomonas maltophilia strain e-a23 prokMSA_id:47527 Stenotrophomonas maltophilia clone IrT-JG14-28 prokMSA_id:48518 Pseudoxanthomonas sp. M1-7 prokMSA_id:48694 Pseudoxanthomonas sp. M1-3 prokMSA_id:49109 clone GL184.21 prokMSA_id:49849 Rape rhizosphere tsb011 prokMSA_id:50487 Stenotrophomonas maltophilia strain c20 prokMSA_id:50679 AT425_EubD3 prokMSA_id:51923 Stenotrophomonas maltophilia SB5 AY050496 prokMSA_id:52247 Stenotrophomonas maltophilia strain e-a1 prokMSA_id:52510 Stenotrophomonas sp. clone KL-15-2-22 AF408330 prokMSA_id:53196 clone GL184.31 prokMSA_id:55295 gamma clone CLi132 prokMSA_id:55391 Xanthomonas campestris pv. campestris str. ATCC 33913 sectio prokMSA_id:57805 SG-3 complete prokMSA_id:59334 clone HP1B89 prokMSA_id:59558 Xanthomonas axonopodis pv. allii prokMSA_id:59922 gamma clone ccs2170 prokMSA_id:60353 clone Caf5 prokMSA_id:60387 Xanthomonas group LA37 prokMSA_id:61805 gamma clone CLs90 prokMSA_id:61818 gamma clone CLs71 prokMSA_id:61900 Xanthomonas-like sp. V4.BO.41 prokMSA_id:62418 gamma clone FTL14 prokMSA_id:62420 gamma clone FTL204 prokMSA_id:64373 Xanthomonas axonopodis pv. citri str. 306 complete genome NC prokMSA_id:64761 gamma clone Poland-16-QC AJ319565 prokMSA_id:65384 Stenotrophomonas maltophilia isolate SaO5lg prokMSA_id:65388 Stenotrophomonas maltophilia isolate SaO5sm prokMSA_id:65525 Xanthomonas campestris pv. campestris str. ATCC 33913 comple prokMSA_id:66133 Xanthomonas axonopodis pv. citri str. 306 section 460 of 469 prokMSA_id:66134 Xanthomonas axonopodis pv. citri str. 306 section 417 of 469 prokMSA_id:66211 Xanthomonas campestris pv. campestris str. ATCC 33913 sectio prokMSA_id:68652 clone KRA30-21 prokMSA_id:68800 Xanthomonas axonopodis pv. citri strain MA ; intergenic spac prokMSA_id:68801 Xanthomonas axonopodis pv. citri strain Lw ; intergenic spac prokMSA_id:68803 Xanthomonas axonopodis pv. aurantifolii strain X341 ; interg prokMSA_id:68804 Xanthomonas axonopodis pv. aurantifolii strain X84 ; interge prokMSA_id:70550 mle1-45 prokMSA_id:70857 Stenotrophomonas maltophilia isolate VUN10003 prokMSA_id:71314 Stenotrophomonas maltophilia isolate ON2 prokMSA_id:71585 Stenotrophomonas maltophilia isolate VUN10002 prokMSA_id:72795 Pseudoxanthomonas taiwanensis prokMSA_id:73182 Xanthomonas campestris prokMSA_id:73868 synthetic wastewater tmbr11-3 complete prokMSA_id:74268 Nitrogen-fixing MAGDE3 prokMSA_id:74521 Stenotrophomonas maltophilia strain e-p13 prokMSA_id:74547 Stenotrophomonas sp prokMSA_id:76525 Thermomonas brevis strain LMG 21746T prokMSA_id:77719 gamma clone:APe9_10 prokMSA_id:78291 gamma clone:APe4_53 prokMSA_id:78802 Stenotrophomonas sp. DW100 isolate DW100 prokMSA_id:79389 Xanthomonas axonopodis complete strain:S11 prokMSA_id:81159 Stenotrophomonas maltophilia clone 15 prokMSA_id:82333 Stenotrophomonas maltophilia clone 1-24 prokMSA_id:83056 Xanthomonas translucens pv. graminis ; -23S intergenic space prokMSA_id:85823 Xanthomonas translucens pv. poae ; intergenic spacer complet prokMSA_id:86511 'Smarlab BioMol-2301083' prokMSA_id:86987 Xanthomonas axonopodis pv. vesicatoria strain CNPH411 and -2 prokMSA_id:87040 Xanthomonas vesicatoria strain CNPH345 and -23S intergenic s prokMSA_id:87180 Xanthomonas gardneri strain CNPH467 and -23S intergenic spac prokMSA_id:87353 Xanthomonas gardneri strain CNPH496 and -23S intergenic spac prokMSA_id:91305 clone LWSR-59 AY345544 prokMSA_id:93887 gamma clone KCM-B-65 AJ581600 2.28.3.8.5.8681 OTU 1 seq prokMSA_id:34452 Gram negative W5P-1 2.28.3.8.5.9150 OTU 1 seq prokMSA_id:7805 Stenotrophomonas QSSC1-10 str. QSSC1-10 2.28.3.8.5.9579 OTU 1 seq prokMSA_id:44870 gamma clone BIsiii14 2.28.3.8.6 XYL.FASTIDIOSA_SUBGROUP 40 seqs 2.28.3.8.6.9569 OTU 40 seqs prokMSA_id:7843 Xylella fastidiosa str. PWT-100 ATCC 35880. M26601 prokMSA_id:7844 Xylella fastidiosa str. PCE-FG ATCC 35881 prokMSA_id:7845 Xylella fastidiosa str. r116v11 prokMSA_id:7846 Xylella fastidiosa str. PD28-5 prokMSA_id:7847 Xylella fastidiosa str. CVC93-2 prokMSA_id:7848 Xylella fastidiosa str. Mul-2 prokMSA_id:7849 Xylella fastidiosa str. OSL92-3. AF159577 prokMSA_id:7850 Xylella fastidiosa str. PWT-22 ATCC 35878 prokMSA_id:7851 Xylella fastidiosa str. PLS2-9 prokMSA_id:7852 Xylella fastidiosa str. PP4-5 prokMSA_id:7853 str. PCE-FF ATCC 35879 prokMSA_id:19013 Xylella fastidiosa AF224734 prokMSA_id:19739 Xylella fastidiosa isolate plant#5 CVC AF224736 prokMSA_id:20550 Xylella fastidiosa strain CO.01 AF203390 prokMSA_id:21170 Xylella fastidiosa strain PL.788 prokMSA_id:21608 Xylella fastidiosa strain GR.8935 AF203391 prokMSA_id:25098 Xylella fastidiosa strain PE.PLS prokMSA_id:27520 Xylella fastidiosa strain ATCC 35874 prokMSA_id:30732 Xylella fastidiosa 9a5c section 7 of 229 of the complete gen prokMSA_id:40772 Xylella fastidiosa isolate MUL1 AF224740 prokMSA_id:50284 Xylella fastidiosa 9a5c complete genome NC_002488 prokMSA_id:50520 Xylella fastidiosa strain CI.52 AF203389 prokMSA_id:50654 Xylella fastidiosa isolate Found 4 AF224737 prokMSA_id:51235 Xylella fastidiosa 9a5c section 16 of 229 of the complete ge prokMSA_id:51545 Xylella fastidiosa strain ATCC 35873 AF224738 prokMSA_id:51876 Xylella fastidiosa 9a5c complete genome AE003849 prokMSA_id:56224 Xylella fastidiosa isolate PLM G83 prokMSA_id:56414 Xylella fastidiosa isolate P3 AF536769 prokMSA_id:59937 Xylella fastidiosa isolate ALS-BC prokMSA_id:59938 Xylella fastidiosa isolate CRS2 prokMSA_id:59939 Xylella fastidiosa isolate CM1 prokMSA_id:59940 Xylella fastidiosa isolate SL1 AF536766 prokMSA_id:59941 Xylella fastidiosa isolate B14 prokMSA_id:59942 Xylella fastidiosa isolate ELM-1 prokMSA_id:59943 Xylella fastidiosa isolate MUL-3 prokMSA_id:59944 Xylella fastidiosa isolate RGW-R prokMSA_id:59945 Xylella fastidiosa isolate Temecula prokMSA_id:74745 Xylella fastidiosa isolate Cafe 20 AF224739 prokMSA_id:79259 Xylella fastidiosa Temecula1 section 1 of 9 of the complete prokMSA_id:79335 Xylella fastidiosa Temecula1 complete genome NC_004556 2.28.3.8.7 XAN.CAMPESTRIS_SUBGROUP 31 seqs 2.28.3.8.7.8297 OTU 1 seq prokMSA_id:18867 sp. Lake Natron isolate 97NT4 2.28.3.8.7.8440 OTU 3 seqs prokMSA_id:7873 str. BrG3 prokMSA_id:75052 Thermomonas fusca strain LMG 21736 AJ519985 prokMSA_id:77152 Thermomonas fusca strain LMG 21737T AJ519986 2.28.3.8.7.8453 OTU 1 seq prokMSA_id:7877 Pseudoxanthomonas broegbernensis str. B1616/1 2.28.3.8.7.8538 OTU 2 seqs prokMSA_id:7854 Xanthomonas campestris str. XC53 prokMSA_id:7870 Xanthomonas campestris str. XC53 2.28.3.8.7.8542 OTU 1 seq prokMSA_id:73958 clone SBR2076 2.28.3.8.7.8563 OTU 4 seqs prokMSA_id:7875 str. 12-3 prokMSA_id:41720 Stenotrophomonas minatitlanensis prokMSA_id:62235 Pseudoxanthomonas sp. UR374_02 prokMSA_id:66929 clone SHA-39 2.28.3.8.7.8573 OTU 1 seq prokMSA_id:27216 gamma clone BIrii42 2.28.3.8.7.8612 OTU 1 seq prokMSA_id:44682 Rhizosphere soil clone RSC-II-42 2.28.3.8.7.8616 OTU 1 seq prokMSA_id:71744 clone TAF-A205 E49 2.28.3.8.7.8622 OTU 1 seq prokMSA_id:64660 Xanthomonas sp. clone burs_22 2.28.3.8.7.8674 OTU 1 seq prokMSA_id:7881 clone SRang1.33 2.28.3.8.7.8682 OTU 1 seq prokMSA_id:7885 Pseudomonas boreopolis ATCC 33662 2.28.3.8.7.8680 OTU 1 seq prokMSA_id:7884 str. DY01 2.28.3.8.7.9093 OTU 1 seq prokMSA_id:62951 clone LPU81 2.28.3.8.7.9270 OTU 9 seqs prokMSA_id:7899 Stenotrophomonas maltophilia LMG 10857 prokMSA_id:7900 Stenotrophomonas maltophilia str. HK40 prokMSA_id:34542 Stenotrophomonas maltophilia strain e-p10 prokMSA_id:38820 Stenotrophomonas maltophilia strain e-p14 prokMSA_id:52297 Stenotrophomonas maltophilia strain e-p17 prokMSA_id:57539 Stenotrophomonas maltophilia strain LE/61 prokMSA_id:61947 Stentrophomonas-like sp. V4.BP.15 prokMSA_id:64287 Stenotrophomonas maltophilia strain LMG 20578 prokMSA_id:68651 clone KRA30-39 2.28.3.8.7.9286 OTU 1 seq prokMSA_id:7859 Stenotrophomonas maltophilia LMG 11104 2.28.3.8.7.9433 OTU 1 seq prokMSA_id:43798 Stenotrophomonas sp. S8 2.28.3.9 LEGIONELLA_GROUP 127 seqs 2.28.3.9.1 LEGIONELLA_SUBGROUP 91 seqs 2.28.3.9.1.1 FLU.DUMOFFII_SUBGROUP 4 seqs 2.28.3.9.1.1.9342 OTU 1 seq prokMSA_id:45405 Crater Lake CL120-7 2.28.3.9.1.1.9612 OTU 1 seq prokMSA_id:7906 Fluoribacter dumoffii str. NY-23 ATCC 33279 2.28.3.9.1.1.9616 OTU 1 seq prokMSA_id:7907 Fluoribacter dumoffii NCTC 11370 2.28.3.9.1.1.9621 OTU 1 seq prokMSA_id:7908 Legionella sp. str. LLAP8 2.28.3.9.1.2 LEG.WADSWORTHII_SUBGROUP 12 seqs 2.28.3.9.1.2.8181 OTU 1 seq prokMSA_id:7911 Fluoribacter gormanii NCTC 11401 2.28.3.9.1.2.8184 OTU 1 seq prokMSA_id:7912 Legionella wadsworthii NCTC 11532 2.28.3.9.1.2.8190 OTU 1 seq prokMSA_id:7915 Legionella cherrii 2.28.3.9.1.2.8220 OTU 8 seqs prokMSA_id:7913 Legionella wadsworthii ATCC 33877 prokMSA_id:7914 Legionella cherrii ATCC 35252 prokMSA_id:7921 Legionella anisa ATCC 35292 prokMSA_id:7928 Legionella sainthelensi ATCC 35248 prokMSA_id:7933 Legionella cincinnatiensis ATCC 43753 prokMSA_id:7934 Legionella steigerwaltii ATCC 35302 prokMSA_id:7960 Legionella pneumophila subsp. pneumophila str. Chicago 2 ATC prokMSA_id:8007 Legionella brunensis 2.28.3.9.1.2.8865 OTU 1 seq prokMSA_id:80375 clone ARKCH2Br2-23 2.28.3.9.1.3 LEG.PARISIENSIS_SUBGROUP 2 seqs 2.28.3.9.1.3.8193 OTU 1 seq prokMSA_id:7916 Legionella parisiensis NCTC 11983 2.28.3.9.1.3.8199 OTU 1 seq prokMSA_id:7917 Legionella parisiensis str. Lyon96010011; FLP2 ATCC 700174 2.28.3.9.1.4 LEG.ANISA_SUBGROUP 1 seq 2.28.3.9.1.4.8235 OTU 1 seq prokMSA_id:7920 Legionella FM-1-679 str. FM-1-679 2.28.3.9.1.5 FLU.BOZEMANAE_SUBGROUP 2 seqs 2.28.3.9.1.5.9244 OTU 2 seqs prokMSA_id:7922 Fluoribacter bozemanae str. Mi-15 sgp1 NCTC 11369 prokMSA_id:7924 Fluoribacter bozemanae str. spg2 NCTC 11975 2.28.3.9.1.6 LEG.CINCINNATIENSIS_SUBGROUP 5 seqs 2.28.3.9.1.6.8252 OTU 1 seq prokMSA_id:7932 Legionella cincinnatiensis NCTC 12438 2.28.3.9.1.6.8259 OTU 1 seq prokMSA_id:7927 Legionella sainthelensi NCTC 11988 2.28.3.9.1.6.8274 OTU 1 seq prokMSA_id:7929 Legionella gratiana NCTC 12788 2.28.3.9.1.6.8292 OTU 1 seq prokMSA_id:7931 Legionella santicrucis NCTC 11999 2.28.3.9.1.6.8962 OTU 1 seq prokMSA_id:60646 gamma clone AEGEAN_234 2.28.3.9.1.7 LEG.LYTICA_SUBGROUP 28 seqs 2.28.3.9.1.7.8307 OTU 1 seq prokMSA_id:7935 Legionella steigerwaltii NCTC 11991 2.28.3.9.1.7.8372 OTU 1 seq prokMSA_id:7944 clone WCHA1-85 2.28.3.9.1.7.8373 OTU 1 seq prokMSA_id:7946 Legionella sp. str. LLAP10 2.28.3.9.1.7.8836 OTU 23 seqs prokMSA_id:7918 Legionella anisa NCTC 11974 prokMSA_id:7937 Legionella lytica str. LLAP-3 PCM 2298 prokMSA_id:7938 Legionella lytica str. LLAP-3 PCM 2298 prokMSA_id:7939 Legionella sp. str. LLAP12. X97366 prokMSA_id:7940 Legionella lytica str. LLAP-3 PCM 2298 prokMSA_id:7941 unnamed organism prokMSA_id:7942 unnamed organism prokMSA_id:7945 Legionella lyticum str. LLAP3 prokMSA_id:7947 Legionella sp. str. LLAP11 prokMSA_id:7948 Legionella sp. str. LLAP2 prokMSA_id:7949 Legionella sp. str. LLAP4 prokMSA_id:7950 Legionella sp. str. LLAP6 prokMSA_id:7951 Legionella sp. str. LLAP7 prokMSA_id:7952 Legionella sp. str. LLAP9 prokMSA_id:7953 Legionella sp. str. LLAP-3 prokMSA_id:7962 Legionella pneumophila subsp. pascullei str. U8W ATCC 33737 prokMSA_id:8001 Legionella rubrilucens NCTC 11987 prokMSA_id:8004 Legionella erythra str. SE-32A-C8 ATCC 35303 prokMSA_id:51847 Legionella pneumophila strain E5C1 prokMSA_id:58869 Legionella busanensis strain K9970 prokMSA_id:62834 Legionella pneumophila serogroup 6 avirulent mutant prokMSA_id:66336 Legionella sp. strain LLAP12 prokMSA_id:73593 Legionella sp. strain LLAP4 X97357 2.28.3.9.1.7.9038 OTU 1 seq prokMSA_id:21751 clone GOUTA10 2.28.3.9.1.7.9253 OTU 1 seq prokMSA_id:52016 clone GOUTB2 2.28.3.9.1.8 LEG.SHAKESPEAREI_SUBGROUP 4 seqs 2.28.3.9.1.8.8417 OTU 1 seq prokMSA_id:7954 Legionella moravica NCTC 12239 2.28.3.9.1.8.8444 OTU 1 seq prokMSA_id:7958 Legionella quateirensis NCTC 12370 2.28.3.9.1.8.8901 OTU 1 seq prokMSA_id:7957 str. LLAP-14 2.28.3.9.1.8.8899 OTU 1 seq prokMSA_id:7955 Legionella worsleiensis NCTC 13277 2.28.3.9.1.9 LEG.PNEUMOPHILA_SUBGROUP 3 seqs 2.28.3.9.1.9.8516 OTU 1 seq prokMSA_id:7963 Legionella waltersii str. 2074-AUS-E ATCC 51914 2.28.3.9.1.9.8698 OTU 1 seq prokMSA_id:73127 clone TAF-B96 2.28.3.9.1.9.8937 OTU 1 seq prokMSA_id:7961 Legionella gresilensis str. Greoux 11 D13 ATCC 700509 2.28.3.9.1.11 LEG.ISRAELENSIS_SUBGROUP 12 seqs 2.28.3.9.1.11.8544 OTU 1 seq prokMSA_id:7972 Legionella fairfieldensis NCTC 12488 2.28.3.9.1.11.8547 OTU 1 seq prokMSA_id:7973 Legionella lansingensis NCTC 12830 2.28.3.9.1.11.8550 OTU 1 seq prokMSA_id:7974 Legionella birminghamensis NCTC 12437 2.28.3.9.1.11.9079 OTU 1 seq prokMSA_id:7975 clone WCHA1-76 2.28.3.9.1.11.9080 OTU 1 seq prokMSA_id:7976 Legionella quinlivanii NCTC 12433 2.28.3.9.1.11.9084 OTU 1 seq prokMSA_id:7977 Legionella geestiana NCTC 12373 2.28.3.9.1.11.9085 OTU 1 seq prokMSA_id:7978 Legionella adelaidensis NCTC 12735 2.28.3.9.1.11.9113 OTU 1 seq prokMSA_id:7981 Legionella oakridgensis NCTC 11531 2.28.3.9.1.11.9112 OTU 1 seq prokMSA_id:7980 Legionella oakridgensis ATCC 33761 2.28.3.9.1.11.9115 OTU 1 seq prokMSA_id:7982 Legionella nautarum NCTC 12375 2.28.3.9.1.11.9117 OTU 1 seq prokMSA_id:7983 Legionella israelensis ATCC 43119 2.28.3.9.1.11.9146 OTU 1 seq prokMSA_id:7984 Legionella israelensis NCTC 12010 2.28.3.9.1.13 TAT.MICDADEI_SUBGROUP 11 seqs 2.28.3.9.1.13.8337 OTU 4 seqs prokMSA_id:7991 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982 prokMSA_id:7993 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982 prokMSA_id:48785 Legionella maceachernii prokMSA_id:52462 Legionella micdadei AF227162 2.28.3.9.1.13.8457 OTU 1 seq prokMSA_id:47939 gamma CHAB-XI-27 5' 2.28.3.9.1.13.9042 OTU 2 seqs prokMSA_id:7995 str. LLAP 1. U64034 prokMSA_id:7996 Legionella sp. str. LLAP1 2.28.3.9.1.13.9198 OTU 2 seqs prokMSA_id:71246 KF-JG30-B15 AJ295651 prokMSA_id:78512 gamma clone JG30a-KF-94 2.28.3.9.1.13.9617 OTU 2 seqs prokMSA_id:7997 Legionella feeleii str. WO-44C ATCC 35072 prokMSA_id:7998 Legionella feeleii str. 691-WI-H ATCC 35849 2.28.3.9.1.14 LEG.ERYTHRA_SUBGROUP 1 seq 2.28.3.9.1.14.9099 OTU 1 seq prokMSA_id:8002 Legionella rubrilucens ATCC 35304 2.28.3.9.1.15 LEG.BRUNENSIS_SUBGROUP 1 seq 2.28.3.9.1.15.9104 OTU 1 seq prokMSA_id:8008 Legionella beliardensis str. Montbeliard A1 2.28.3.9.1.16 LEG.JAMESTOWNIENSIS_SUBGROUP 3 seqs 2.28.3.9.1.16.9136 OTU 1 seq prokMSA_id:8010 Legionella jamestowniensis ATCC 35298 2.28.3.9.1.16.9140 OTU 1 seq prokMSA_id:8012 Legionella jamestowniensis NCTC 11981 2.28.3.9.1.16.9139 OTU 1 seq prokMSA_id:8011 str. NKB5 2.28.3.9.1.17 LEG.JORDANIS_SUBGROUP 2 seqs 2.28.3.9.1.17.8168 OTU 1 seq prokMSA_id:8013 Legionella jordanis NCTC 11533 2.28.3.9.1.17.9168 OTU 1 seq prokMSA_id:8014 Legionella jordanis ATCC 33623 2.28.3.9.2 COX.BURNETII_SUBGROUP 36 seqs 2.28.3.9.2.8198 OTU 1 seq prokMSA_id:50747 Endosymbiont of Folsomia candida 2.28.3.9.2.8256 OTU 1 seq prokMSA_id:46260 Ornithodoros moubata symbiote A 2.28.3.9.2.8298 OTU 1 seq prokMSA_id:8028 Rickettsiella grylli 2.28.3.9.2.8296 OTU 1 seq prokMSA_id:8026 str. JTB256 2.28.3.9.2.8301 OTU 1 seq prokMSA_id:8029 clone Sva0714 2.28.3.9.2.8378 OTU 1 seq prokMSA_id:74504 gamma KTc0924 2.28.3.9.2.8438 OTU 1 seq prokMSA_id:74455 gamma clone R14 2.28.3.9.2.8459 OTU 1 seq prokMSA_id:30360 gamma KEppiB7 2.28.3.9.2.8568 OTU 1 seq prokMSA_id:16391 Rickettsiella sp. GSU 2.28.3.9.2.8657 OTU 1 seq prokMSA_id:51432 gamma MERTZ_21CM_277 2.28.3.9.2.8663 OTU 10 seqs prokMSA_id:19290 Legionella sp. IUB43 prokMSA_id:19657 Legionella sp. IA55 prokMSA_id:22506 Legionella sp. OA32 prokMSA_id:24832 Legionella sp. OUA34 prokMSA_id:33240 Legionella sp. IUA36 prokMSA_id:41926 Legionella sp. OI36 prokMSA_id:45382 Legionella sp. IY2 prokMSA_id:49165 Legionella sp. II29 prokMSA_id:49724 Legionella sp. OY6 prokMSA_id:51890 Legionella sp. OUB41 2.28.3.9.2.8668 OTU 1 seq prokMSA_id:48746 gamma MERTZ_2CM_122 2.28.3.9.2.8771 OTU 10 seqs prokMSA_id:8018 Coxiella burnetii str. 58T prokMSA_id:8019 Coxiella burnetii str. 50F. D89796 prokMSA_id:8020 Coxiella burnetii str. Q212. D89797 prokMSA_id:8021 Coxiella burnetii str. VR730. D89798 prokMSA_id:8022 Coxiella burnetii str. 1M. D89799 prokMSA_id:8023 Coxiella burnetii str. 27M. D89800 prokMSA_id:8024 Coxiella burnetii str. Ohio. D89791 prokMSA_id:8025 Coxiella burnetii str. 607. D89792 prokMSA_id:83477 Coxiella burnetii RSA 493 complete genome NC_002971 prokMSA_id:84670 Coxiella burnetii strain RSA 493 section 1 of 7 of the compl 2.28.3.9.2.8969 OTU 1 seq prokMSA_id:79079 gamma clone JG30-KF-C15 2.28.3.9.2.9076 OTU 1 seq prokMSA_id:73506 from Cecidotrioza sozanica 2.28.3.9.2.9171 OTU 1 seq prokMSA_id:8017 Coxiella sp 2.28.3.9.2.9489 OTU 1 seq prokMSA_id:45765 clone HTA4 2.28.3.9.2.9581 OTU 1 seq prokMSA_id:35529 gamma MERTZ_0CM_353 2.28.3.10 METHYLOMONAS_GROUP 100 seqs 2.28.3.10.1 ENDOSYMBIONT_OF_HELIOTHIS 1 seq 2.28.3.10.1.8356 OTU 1 seq prokMSA_id:8030 endosymbiont of Heliothis virescens testis 2.28.3.10.3 MLC.CAPSULATUS_SUBGROUP 18 seqs 2.28.3.10.3.8299 OTU 1 seq prokMSA_id:40198 gamma M84-D36 clone M84-D36 2.28.3.10.3.8359 OTU 1 seq prokMSA_id:8035 Methylococcus thermophilus str. IMV-B-3037 2.28.3.10.3.8418 OTU 1 seq prokMSA_id:40285 Methylococcaceae clone GW70-10-16 2.28.3.10.3.8427 OTU 1 seq prokMSA_id:8045 Methylocaldum szegediense str. OR2 2.28.3.10.3.8587 OTU 1 seq prokMSA_id:55626 clone T5-3 rrn 2.28.3.10.3.8667 OTU 1 seq prokMSA_id:8036 Methylococcus capsulatus str. Bath ACM 3302 2.28.3.10.3.8810 OTU 1 seq prokMSA_id:54364 gamma M90-D37 clone M90-D37 2.28.3.10.3.8980 OTU 1 seq prokMSA_id:57791 clone SBRL2_19 2.28.3.10.3.9008 OTU 6 seqs prokMSA_id:56539 clone SBRQ152 prokMSA_id:56552 clone SBRQ157 prokMSA_id:58384 clone SBRQ196 prokMSA_id:58385 clone SBRQ191 AF361091 prokMSA_id:58386 clone SBRQ185 prokMSA_id:58387 clone SBRQ171 2.28.3.10.3.9121 OTU 1 seq prokMSA_id:21269 isolate BUG-114 2.28.3.10.3.9322 OTU 1 seq prokMSA_id:8037 Methylococcus capsulatus str. Texas ACM 1292 2.28.3.10.3.9468 OTU 1 seq prokMSA_id:57801 clone SBRL2_40 2.28.3.10.3.9572 OTU 1 seq prokMSA_id:21930 gamma clone 4-25 2.28.3.10.4 MLM.METHANICA_SUBGROUP 72 seqs 2.28.3.10.4.8187 OTU 1 seq prokMSA_id:8089 clone BPC036 2.28.3.10.4.8197 OTU 1 seq prokMSA_id:33884 gamma M90-D1 clone M90-D1 2.28.3.10.4.8219 OTU 1 seq prokMSA_id:17922 I methanotroph T1-04 2.28.3.10.4.8232 OTU 1 seq prokMSA_id:19000 gamma MERTZ_21CM_119 2.28.3.10.4.8250 OTU 1 seq prokMSA_id:24860 clone 1605-59 2.28.3.10.4.8284 OTU 2 seqs prokMSA_id:8051 str. AML-C10 prokMSA_id:8052 str. AML-D4 2.28.3.10.4.8402 OTU 2 seqs prokMSA_id:8086 Methylobacter luteus ACM 3304 prokMSA_id:8091 Methylobacter whittenburyi ACM 3309 2.28.3.10.4.8420 OTU 1 seq prokMSA_id:47633 SY6-106 2.28.3.10.4.8625 OTU 1 seq prokMSA_id:29378 gamma CE102 2.28.3.10.4.8645 OTU 14 seqs prokMSA_id:8057 Methylomonas scandinavica. AJ131369 prokMSA_id:8060 Methylomicrobium alcaliphilum str. 5z prokMSA_id:8063 Methylomicrobium NI str. NI prokMSA_id:8066 Methylomonas methanica prokMSA_id:8067 Methylomonas LW21 str. LW21 prokMSA_id:8068 Methylomonas LW19 str. LW19 prokMSA_id:8069 Methylomonas LW16 str. LW16 prokMSA_id:8070 Methylomonas LW15 str. LW15 prokMSA_id:8071 Methylomonas LW13 str. LW13 prokMSA_id:8078 Methylomonas sp. str. KSPIII prokMSA_id:8081 Methylomicrobium agile str. A30 ACM 3308 prokMSA_id:45263 Methylomonas methanica S1 complete prokMSA_id:70707 strain AMO 1 prokMSA_id:81028 gamma clone ML513M-26 2.28.3.10.4.8729 OTU 1 seq prokMSA_id:48494 gamma clone 8-4 2.28.3.10.4.8776 OTU 1 seq prokMSA_id:29708 Marinomonas SIC.163 2.28.3.10.4.8788 OTU 1 seq prokMSA_id:20195 gamma MERTZ_2CM_276 2.28.3.10.4.8821 OTU 7 seqs prokMSA_id:8097 Methylobacter T20 str. T20 prokMSA_id:8098 Methylobacter psychrophilus str. Z-0021 prokMSA_id:31630 clone LO13.6 prokMSA_id:40043 Methylobacter luteus NCIMB 11914 complete prokMSA_id:41292 gamma clone 8-65 prokMSA_id:42401 FukuN13 prokMSA_id:43109 Methylobacter sp. SV96 strain SV96 2.28.3.10.4.8826 OTU 1 seq prokMSA_id:24674 gamma MERTZ_2CM_211 2.28.3.10.4.8840 OTU 2 seqs prokMSA_id:22040 Methylobacter sp. LW12 prokMSA_id:40125 Methylobacter sp. LW14 2.28.3.10.4.8893 OTU 2 seqs prokMSA_id:29983 I methanotroph T1-14 prokMSA_id:51129 I methanotroph T1-13 2.28.3.10.4.8913 OTU 1 seq prokMSA_id:77645 gamma clone Hyd89-87 2.28.3.10.4.8915 OTU 1 seq prokMSA_id:8050 Methylomicrobium album str. VKM-BG8 ACM 3314 2.28.3.10.4.8919 OTU 2 seqs prokMSA_id:8084 Methylomonas aurantiaca str. JB103 phenon3 ACM 3406 prokMSA_id:8090 Methylomonas fodinarum str. JB13 phenon2 ACM 3268 2.28.3.10.4.8929 OTU 1 seq prokMSA_id:8059 Methylomicrobium pelagicum ACM 3505 2.28.3.10.4.8940 OTU 1 seq prokMSA_id:41887 I methanotroph T1-09 2.28.3.10.4.8949 OTU 1 seq prokMSA_id:64552 Caedibacter taeniospiralis 2.28.3.10.4.9017 OTU 1 seq prokMSA_id:20538 I methanotroph T1-08 2.28.3.10.4.9065 OTU 1 seq prokMSA_id:56096 gamma clone 1-27 2.28.3.10.4.9070 OTU 1 seq prokMSA_id:52100 gamma M90-D9 clone M90-D9 2.28.3.10.4.9182 OTU 5 seqs prokMSA_id:8087 Methylobacter LW1 str. LW1. AF150784 prokMSA_id:8096 Methylobacter BB5.1 prokMSA_id:37065 Methylobacter marinus A45 complete prokMSA_id:40524 Methylococcaceae clone GW70-10-42 prokMSA_id:54307 Methylococcaceae clone GW70-20-8 2.28.3.10.4.9188 OTU 1 seq prokMSA_id:8076 unnamed organism 2.28.3.10.4.9269 OTU 1 seq prokMSA_id:20100 gamma SA51 2.28.3.10.4.9304 OTU 1 seq prokMSA_id:47576 SY6-109 2.28.3.10.4.9311 OTU 1 seq prokMSA_id:33214 I methanotroph T1-05 2.28.3.10.4.9313 OTU 1 seq prokMSA_id:8092 Methylobacter Methylobacter pAMC419 2.28.3.10.4.9314 OTU 1 seq prokMSA_id:8095 clone RB07 2.28.3.10.4.9415 OTU 1 seq prokMSA_id:50819 gamma M84-D42 clone M84-D42 2.28.3.10.4.9419 OTU 1 seq prokMSA_id:34897 gamma MERTZ_2CM_5 2.28.3.10.4.9438 OTU 1 seq prokMSA_id:77724 gamma clone Hyd24-01 2.28.3.10.4.9503 OTU 5 seqs prokMSA_id:8082 Methylomicrobium Methylomicrobium pAMC466 prokMSA_id:8083 Methylomicrobium Methylomicrobium pAMC421 prokMSA_id:31246 I methanotroph R4 AF182499 prokMSA_id:49658 I methanotroph R2 AF182497 prokMSA_id:67240 Methylobacter sp. HG-1 AF495887 2.28.3.10.4.9547 OTU 1 seq prokMSA_id:45451 gamma M84-D45 clone M84-D45 2.28.3.10.4.9597 OTU 1 seq prokMSA_id:36761 gamma MERTZ_2CM_121 2.28.3.10.4.9637 OTU 1 seq prokMSA_id:42477 gamma MERTZ_0CM_61 2.28.3.10.5 MBC.LUTEUS_SUBGROUP 9 seqs 2.28.3.10.5.8186 OTU 1 seq prokMSA_id:8100 symbiont of methanotrophic symbiont of Louisiana Slope musse 2.28.3.10.5.8358 OTU 1 seq prokMSA_id:22752 Bathymodiolus sp. symbiont I 2.28.3.10.5.8435 OTU 1 seq prokMSA_id:50455 Bathymodiolus japonicus methanotrophic gill symbiont 2.28.3.10.5.8744 OTU 1 seq prokMSA_id:36844 Methylophaga sp. Loihi-Chm-3 2.28.3.10.5.8877 OTU 1 seq prokMSA_id:16413 Bathymodiolus platifrons methanotrophic gill symbiont 2.28.3.10.5.8963 OTU 3 seqs prokMSA_id:16464 gamma clone 33-PA121B98 AF469289 prokMSA_id:26347 gamma clone 33-PA129B98 prokMSA_id:51649 gamma clone CTD47B 2.28.3.10.5.9318 OTU 1 seq prokMSA_id:8099 symbiont of mussel methanotrophic gill 2.28.3.11 OCEANOSPIRILLUM_GROUP 261 seqs 2.28.3.11.1 HALOMONAS_SUBGROUP 179 seqs 2.28.3.11.1.1 OSP.JAPONICUM_SUBGROUP 1 seq 2.28.3.11.1.1.8194 OTU 1 seq prokMSA_id:8109 Oceanospirillum japonicum ATCC 19191 2.28.3.11.1.3 ZYB.PALMAE_SUBGROUP 38 seqs 2.28.3.11.1.3.8233 OTU 1 seq prokMSA_id:8115 Carnomonas nigrifaciens str. CTCBS1 2.28.3.11.1.3.8247 OTU 1 seq prokMSA_id:54683 Carsonella ruddii natural-host Spanioneura fonscolombii 23S 2.28.3.11.1.3.8290 OTU 1 seq prokMSA_id:19432 Primary endosymbiont of Cecidotrioza sozanica 2.28.3.11.1.3.8309 OTU 14 seqs prokMSA_id:8121 symbiont of Bemisia tabaci sweetpotato whitefly. Z11925 prokMSA_id:19222 Primary endosymbiont of Bemisia tabaci clone MEX4 prokMSA_id:20005 Primary endosymbiont of Bemisia tabaci clone MEX12 prokMSA_id:28101 Primary endosymbiont of Bemisia tabaci clone AZA prokMSA_id:29094 Primary endosymbiont of Bemisia tabaci clone TANZ15 AF400463 prokMSA_id:34503 Primary endosymbiont of Bemisia tabaci clone AUS prokMSA_id:36328 Primary endosymbiont of Bemisia tabaci clone UG23 prokMSA_id:39721 Primary endosymbiont of Bemisia tabaci clone UG39 prokMSA_id:42418 Primary endosymbiont of Bemisia tabaci clone CAMW15 prokMSA_id:43103 Primary endosymbiont of Bemisia tabaci clone TANZ18 prokMSA_id:43537 Primary endosymbiont of Bemisia tabaci clone TANZ3 prokMSA_id:49640 Primary endosymbiont of Bemisia tabaci clone IND34 prokMSA_id:73878 Primary endosymbiont of Bemisia argentifolii ; tRNA-Ile comp prokMSA_id:88180 Candidatus Portiera aleyrodidarum genomic AY268081 2.28.3.11.1.3.8331 OTU 1 seq prokMSA_id:46892 Primary endosymbiont of Bemisia tabaci clone UG26 2.28.3.11.1.3.8365 OTU 1 seq prokMSA_id:54086 Carsonella ruddii natural-host Trioza urticae 23S and genes 2.28.3.11.1.3.8470 OTU 1 seq prokMSA_id:53696 Carsonella ruddii natural-host Glycaspis brimblecombei 23S a 2.28.3.11.1.3.8709 OTU 1 seq prokMSA_id:53577 Carsonella ruddii endosymbiont of Arytaina genistae and 23S 2.28.3.11.1.3.8841 OTU 1 seq prokMSA_id:52996 Carsonella ruddii natural-host Panisopelma fulvescens 23S an 2.28.3.11.1.3.8855 OTU 2 seqs prokMSA_id:27044 Primary endosymbiont of Psylla ?floccosa prokMSA_id:53049 Carsonella ruddii natural-host Psylla sp. 23S and genes 2.28.3.11.1.3.8895 OTU 1 seq prokMSA_id:54984 Carsonella ruddii natural-host Heteropsylla texana 23S and g 2.28.3.11.1.3.8979 OTU 1 seq prokMSA_id:54580 Carsonella ruddii natural-host Psylla buxi 23S and genes 2.28.3.11.1.3.8994 OTU 1 seq prokMSA_id:25150 Primary endosymbiont of Trialeurodes abutilonea 2.28.3.11.1.3.9004 OTU 1 seq prokMSA_id:8120 unnamed organism 2.28.3.11.1.3.9012 OTU 2 seqs prokMSA_id:46529 Mycetocyte endosymbiont of Diaphorina citri prokMSA_id:54539 Carsonella ruddii natural-host Diaphorina citri 23S and gene 2.28.3.11.1.3.9176 OTU 1 seq prokMSA_id:54499 Carsonella ruddii and 23S genes 2.28.3.11.1.3.9463 OTU 1 seq prokMSA_id:51913 Primary endosymbiont of Aleurodicus dugesii 2.28.3.11.1.3.9513 OTU 2 seqs prokMSA_id:22092 Primary endosymbiont of Paratrioza cockerelli prokMSA_id:68911 Carsonella ruddii natural-host cockerelli tryptophanyl-tRNA 2.28.3.11.1.3.9535 OTU 1 seq prokMSA_id:54310 Carsonella ruddii natural-host Cacopsylla peregrina 23S and 2.28.3.11.1.3.9558 OTU 1 seq prokMSA_id:69260 Carsonella ruddii natural-host Russelliana intermedia 23S an 2.28.3.11.1.3.9631 OTU 2 seqs prokMSA_id:54585 Carsonella ruddii country Chile 23S and genes prokMSA_id:68912 Carsonella ruddii country USA tryptophanyl-tRNA synthetase t 2.28.3.11.1.5 CH.MARISMORTUI_SUBGROUP 13 seqs 2.28.3.11.1.5.8317 OTU 3 seqs prokMSA_id:8126 Pseudomonas beijerinckii ATCC 19372 prokMSA_id:43878 Chromohalobacter canadensis prokMSA_id:46277 Chromohalobacter canadensis strain ATCC 43984 T 2.28.3.11.1.5.8514 OTU 9 seqs prokMSA_id:8127 Chromohalobacter marismortui str. A-100 prokMSA_id:8128 Chromohalobacter marismortui str. A-492 prokMSA_id:8129 Chromohalobacter marismortui str. T1093 prokMSA_id:8130 Chromohalobacter marismortui str. A-65 prokMSA_id:35612 Halomonas elongata strain ATCC 33174 prokMSA_id:37191 Chromohalobacter israelensis strain ATCC 43985 T prokMSA_id:43545 Chromohalobacter israelensis prokMSA_id:48786 Halomonas elongata strain DSM 3043 prokMSA_id:52988 Halophilic TAG C11 2.28.3.11.1.5.9421 OTU 1 seq prokMSA_id:45184 antarctic soil clone bh4.45 2.28.3.11.1.6 HLM.DESIDERATA_SUBGROUP 22 seqs 2.28.3.11.1.6.8334 OTU 1 seq prokMSA_id:8133 Halomonas campusalis 2.28.3.11.1.6.9255 OTU 12 seqs prokMSA_id:22868 Halomonas marina strain DSM 4741 AJ306890 prokMSA_id:31691 Halomonas sp. KMM 3550 AF316143 prokMSA_id:34862 Halomonas sp. Msw1.1556b complete AF212205 prokMSA_id:80433 Marine P_wp0224 prokMSA_id:92002 Halomonas sp. WHOI JT-29 AY349462 prokMSA_id:93482 Halomonas sp. wp38 isolate wp38 AJ551113 prokMSA_id:93560 Halomonas sp. wp39 isolate wp39 AJ551114 prokMSA_id:93721 Halomonas sp. mp1 isolate mp1 AJ551115 prokMSA_id:93868 Halomonas sp. mp6 isolate mp6 AJ551120 prokMSA_id:93962 Halomonas sp. wp31 isolate wp31 AJ551108 prokMSA_id:94081 Halomonas sp. wp29 isolate wp29 AJ551106 prokMSA_id:94104 Halomonas sp. wp34 isolate wp34 AJ551111 2.28.3.11.1.6.9446 OTU 2 seqs prokMSA_id:26569 Halomonas sp. IB-I6 strain IB-I6 AJ302088 prokMSA_id:46054 Deleya sp. ASE1315 2.28.3.11.1.6.9526 OTU 2 seqs prokMSA_id:38608 Halomonas marisflava AF251143 prokMSA_id:60375 Halomonadaceae PH17 2.28.3.11.1.6.9530 OTU 5 seqs prokMSA_id:8132 Halomonas MBIC2031 str. MBIC2031. AB025599 prokMSA_id:8135 Haererehalobacter ostenderis. U78786 prokMSA_id:69979 Pseudomonas sp. Fsur-1 AB055789 prokMSA_id:82029 Halomonas sp. 3012dK AY196981 prokMSA_id:82752 Halomonas sp. clone ABBB-82 2.28.3.11.1.7 HLM.SUBGLACIESCOLA_SUBGROUP 88 seqs 2.28.3.11.1.7.8242 OTU 1 seq prokMSA_id:38116 Halomonas subglaciescola strain DSM 4683 2.28.3.11.1.7.8429 OTU 26 seqs prokMSA_id:8149 Halomonas aquamarina str. DS40M3 prokMSA_id:8150 Halomonas MBIC1142 str. MBIC1142 prokMSA_id:8151 str. HTB143 prokMSA_id:8152 str. HTB069 prokMSA_id:8153 str. HTB123 prokMSA_id:8154 str. HTB111 prokMSA_id:8156 str. HTB138 prokMSA_id:8157 str. HTB122 prokMSA_id:18077 Halomonas sp. Althf1.1723a complete prokMSA_id:19859 Halomonas aquamarina strain DSM 30161 prokMSA_id:25345 Halomonas sp. Eplume2.B1 complete prokMSA_id:30624 Halomonas meridiana strain DSM 5425 prokMSA_id:33775 Slope strain DII1a prokMSA_id:35815 Halomonas sp. Ssw1.1818c complete prokMSA_id:42510 Halomonas sp. Slthf1.1874b complete prokMSA_id:42563 Halomonas sp. NIBH P1H13 prokMSA_id:42780 Halomonas sp. NIBH P1H25 prokMSA_id:44149 Halomonas sp. NIBH P1H14 prokMSA_id:54333 Halomonas sp. NIBH P1H22 prokMSA_id:71069 Halomonas sp. V4.MS.05 prokMSA_id:75016 Halomonas sp. HY-101 isolate HY-101 prokMSA_id:75806 Halomonas sp. HY-51m isolate HY-51m prokMSA_id:76518 Halomonas sp. HY-23k isolate HY-23k prokMSA_id:80894 Halomonas sp. P_wp0221 prokMSA_id:84393 Marine arctic deep-sea FB8 prokMSA_id:84649 Marine arctic deep-sea HF13 2.28.3.11.1.7.8562 OTU 1 seq prokMSA_id:61014 Halomonas sp. TNB I20 2.28.3.11.1.7.8576 OTU 9 seqs prokMSA_id:61004 Halomonas sp. SYM P12 prokMSA_id:61005 Halomonas sp. NT N100 prokMSA_id:61006 Halomonas sp. NT N97 prokMSA_id:61010 Halomonas sp. SMT L4 prokMSA_id:76319 Halomonas sp. Ko502 prokMSA_id:76753 Halomonas sp. Ko501 prokMSA_id:84290 Halomonas sp. E23 prokMSA_id:85461 Halomonas sp. E21 prokMSA_id:86698 Halomonas sp. R21 2.28.3.11.1.7.8598 OTU 30 seqs prokMSA_id:8131 Halomonas desiderata str. FB2 DSM 9502 . X92417 prokMSA_id:8147 Halomonas ML-028 str. ML-028 prokMSA_id:8148 Halomonas meridiana ACAM 246 . M93356 prokMSA_id:17793 Halomonas sp. TAG C4 prokMSA_id:22626 Arctic seawater R7079 prokMSA_id:22659 Halomonas sp. EF43 AF280796 prokMSA_id:22745 Halomonas sp. BYS-1 AY062217 prokMSA_id:23983 Halomonas sp. Splume4.1864c complete AF212216 prokMSA_id:24039 Halomonas sp. Sbplume1.1840c complete AF212214 prokMSA_id:30146 Halomonas sp. NIBH P1H8 prokMSA_id:31671 Arctic seawater R7103 prokMSA_id:34303 sp. Lake Bogoria isolate WB4 X92145 prokMSA_id:35481 sp. Lake Nakuru isolate 19N1 prokMSA_id:36640 Halomonas sp. Slthf2.1878c complete AF212218 prokMSA_id:40862 Halomonas venusta strain DSM 4743 AJ306894 prokMSA_id:51148 sp. Lake Magadi isolate 21M1 prokMSA_id:52762 clone p-860-a5 prokMSA_id:63144 Halomonas sp. YIM-kkny11 prokMSA_id:70966 Halomonas sp. Dsur-1 prokMSA_id:71016 Halomonas variabilis prokMSA_id:71534 gamma strain OS-1488 AJ311970 prokMSA_id:75036 Halomonas variabilis isolate HY-B3 prokMSA_id:75357 Halomonas sp. HY-B2 isolate HY-B2 prokMSA_id:75482 Halomonas sp. HY-23g isolate HY-23g AJ294344 prokMSA_id:75638 Halomonas variabilis isolate HY-51g prokMSA_id:81690 Halomonas variabilis strain HTG7 AY204638 prokMSA_id:81790 Halomonas frigidi strain DD 39 prokMSA_id:91936 Halomonas sp. EF11 AY332559 prokMSA_id:93527 Halomonas sp. es11 isolate es11 AJ551130 prokMSA_id:96155 Halomonas sp. DY8-1 AY383044 2.28.3.11.1.7.8854 OTU 14 seqs prokMSA_id:8143 Halomonas variabilis str. SW04 prokMSA_id:8144 Halomonas variabilis str. SW32 prokMSA_id:8145 Halomonas variabilis str. SW48 prokMSA_id:33823 Halomonas variabilis strain DSM 3051 prokMSA_id:35278 Halomonas sp. Eplume3.D3 complete prokMSA_id:40996 Halomonas sp. Eplume1.A1 complete prokMSA_id:61007 Halomonas sp. ARD M36 prokMSA_id:61008 Halomonas sp. ARD M34 prokMSA_id:61013 Halomonas sp. TNB I24 prokMSA_id:75905 Halomonas variabilis isolate HY-61 prokMSA_id:81833 Halomonas boliviensis strain LC2 prokMSA_id:82157 Halomonas variabilis strain ANT9112 prokMSA_id:82388 Halomonas boliviensis strain LC1 prokMSA_id:82406 Halomonas sp. ANT9086 2.28.3.11.1.7.8939 OTU 1 seq prokMSA_id:8146 Halomonas QSSC9-11 str. QSSC9-11 2.28.3.11.1.7.8981 OTU 1 seq prokMSA_id:24119 Halomonas sp. ML-027 2.28.3.11.1.7.8989 OTU 1 seq prokMSA_id:44057 Halomonas sp. Loihi-Chm-5 2.28.3.11.1.7.9025 OTU 1 seq prokMSA_id:34220 Halomonas sp. UT103 2.28.3.11.1.7.9471 OTU 1 seq prokMSA_id:79151 Gamma UMB18C 2.28.3.11.1.7.9534 OTU 2 seqs prokMSA_id:61011 Halomonas sp. SYO J42 prokMSA_id:61012 Halomonas sp. TNB I26 2.28.3.11.1.8 HLM.ELONGATA_SUBGROUP 17 seqs 2.28.3.11.1.8.8262 OTU 1 seq prokMSA_id:36784 Halomonas cupida 2.28.3.11.1.8.8466 OTU 1 seq prokMSA_id:73550 O11D12 2.28.3.11.1.8.8728 OTU 2 seqs prokMSA_id:8162 Halomonas halmophila ATCC 19717 . M59153 prokMSA_id:26353 Halomonas halmophila strain ATCC 19717 2.28.3.11.1.8.8879 OTU 1 seq prokMSA_id:39499 antarctic soil clone bh3.31 2.28.3.11.1.8.8903 OTU 4 seqs prokMSA_id:8165 Halomonas salina ATCC 49509 prokMSA_id:8166 Halomonas salina DSM 5928 prokMSA_id:25638 Halomonas salina strain F8-11 T prokMSA_id:52868 Halomonas salina AF301407 2.28.3.11.1.8.9071 OTU 1 seq prokMSA_id:8170 Halomonas halodenitrificans ATCC 13511 2.28.3.11.1.8.9141 OTU 1 seq prokMSA_id:67708 Halomonas sp. SK1 2.28.3.11.1.8.9201 OTU 1 seq prokMSA_id:8171 Halomonas salina ATCC 49509 2.28.3.11.1.8.9328 OTU 1 seq prokMSA_id:46225 sp. Lake Bogoria isolate 8B1 2.28.3.11.1.8.9382 OTU 1 seq prokMSA_id:79723 clone:OHKB7.22 2.28.3.11.1.8.9592 OTU 1 seq prokMSA_id:28015 Halomonas alimentaria 2.28.3.11.1.8.9629 OTU 1 seq prokMSA_id:33427 sp. Lake Bogoria isolate 65B4 2.28.3.11.1.8.9645 OTU 1 seq prokMSA_id:43696 sp. Lake Magadi isolate 27M1 2.28.3.11.2 OSP.MARIS_SUBGROUP 48 seqs 2.28.3.11.2.8202 OTU 1 seq prokMSA_id:59151 Oceanospirillum sp. MED92 2.28.3.11.2.8351 OTU 7 seqs prokMSA_id:35476 Marine 'Sippewissett 2-32' AF055821 prokMSA_id:51065 Microbulbifer salipaludis strain SM-1 AF479688 prokMSA_id:55775 Pseudomonas elongata strain DSM 6810 prokMSA_id:85971 Pseudomonas sp. CJ11075 prokMSA_id:92740 Microbulbifer sp. NRL-TS4 AY357901 prokMSA_id:93132 Microbulbifer sp. NRL-CB10 AY357895 prokMSA_id:95512 Microbulbifer sp. JAMB-A7 AB107975 2.28.3.11.2.8596 OTU 6 seqs prokMSA_id:22558 gamma clone Arctic95B-7 prokMSA_id:26646 gamma clone Arctic95B-13 prokMSA_id:79764 clone ARKICE-72 prokMSA_id:80311 clone ARKDMS-13 prokMSA_id:80534 clone ARKIA-75 prokMSA_id:81989 Arctic sea ice clone ARKXVI/2-134 2.28.3.11.2.8655 OTU 1 seq prokMSA_id:29312 sponge symbiont JAWS20 2.28.3.11.2.8705 OTU 1 seq prokMSA_id:60370 Halomonadaceae PH27A 2.28.3.11.2.8722 OTU 1 seq prokMSA_id:8189 Oceanospirillum linum ATCC 11336 2.28.3.11.2.8726 OTU 1 seq prokMSA_id:33570 gamma MERTZ_2CM_259 2.28.3.11.2.8779 OTU 3 seqs prokMSA_id:8184 Oceanospirillum beijerinckii subsp. pelagicum str. SWC UF1 I prokMSA_id:8186 Oceanospirillum beijerinckii subsp. beijerinckii IFO 15445 prokMSA_id:8187 Oceanospirillum beijerinckii subsp. beijerinckii ATCC 12754 2.28.3.11.2.8797 OTU 4 seqs prokMSA_id:8178 Oceanospirillum maris subsp. williamsae str. 2b IFO 15468 prokMSA_id:8180 Oceanospirillum maris subsp. hiroshimense IFO 13616 prokMSA_id:8182 Oceanospirillum maris subsp. maris ATCC 27649 prokMSA_id:8183 Oceanospirillum maris subsp. maris str. Jannasch 10 ATCC 275 2.28.3.11.2.9016 OTU 1 seq prokMSA_id:45957 gamma KTc1119 2.28.3.11.2.9035 OTU 1 seq prokMSA_id:83738 Microbulbifer sp. CJ11049 2.28.3.11.2.9092 OTU 1 seq prokMSA_id:8176 Oceanospirillum multiglobuliferum IFO 13614 2.28.3.11.2.9103 OTU 1 seq prokMSA_id:8179 clone HstpL43 2.28.3.11.2.9161 OTU 1 seq prokMSA_id:8181 str. BD1-7 2.28.3.11.2.9191 OTU 1 seq prokMSA_id:31816 marine 2.28.3.11.2.9340 OTU 1 seq prokMSA_id:50920 gamma MERTZ_2CM_227 2.28.3.11.2.9454 OTU 1 seq prokMSA_id:37312 gamma MERTZ_0CM_134 2.28.3.11.2.9495 OTU 1 seq prokMSA_id:81830 Antarctic sea ice clone ANTXI/4_14-16 2.28.3.11.2.9514 OTU 1 seq prokMSA_id:26630 Unknown marine gamma NOR5 2.28.3.11.2.9648 OTU 13 seqs prokMSA_id:8177 clone OCS44 prokMSA_id:8790 clone OM10 prokMSA_id:18452 isolate HRV33 Z88589 prokMSA_id:18789 gamma NAC11-19 prokMSA_id:21417 gamma MB11E02 prokMSA_id:22651 gamma NAC11-11 prokMSA_id:54612 gamma MB12D03 ; and 23S complete prokMSA_id:54824 gamma MB11B08 and 23S genes prokMSA_id:54972 gamma MB11G09 and 23S genes prokMSA_id:55020 gamma MB12G11 and 23S genes prokMSA_id:60645 gamma clone AEGEAN_146 AF406528 prokMSA_id:72166 gamma clone AEGEAN_209 prokMSA_id:92279 gamma clone PLY-P1-108 AY354844 2.28.3.11.3 MARINOMONAS_ASSEMBLAGE 34 seqs 2.28.3.11.3.8230 OTU 1 seq prokMSA_id:63932 gamma MERTZ_2CM_247 2.28.3.11.3.8289 OTU 1 seq prokMSA_id:71553 gamma clone BIyi10 2.28.3.11.3.8322 OTU 1 seq prokMSA_id:8192 ATCC 27130 2.28.3.11.3.8330 OTU 1 seq prokMSA_id:8211 clone OM241 2.28.3.11.3.8329 OTU 1 seq prokMSA_id:8210 Marinomonas protea 2.28.3.11.3.8345 OTU 1 seq prokMSA_id:8195 Oceanospirillum ML-158 str. ML-158 2.28.3.11.3.8348 OTU 1 seq prokMSA_id:80239 Arctic sea ice ARK10038 2.28.3.11.3.8496 OTU 1 seq prokMSA_id:53230 Marinomonas sp. kbs31 2.28.3.11.3.8653 OTU 1 seq prokMSA_id:79342 clone ZA3706c 2.28.3.11.3.8673 OTU 3 seqs prokMSA_id:43675 Neptunomonas SIC.9029 AF277515 prokMSA_id:79245 UMB8C prokMSA_id:79509 Gamma UMB6E 2.28.3.11.3.8696 OTU 1 seq prokMSA_id:16507 gamma Arctic95D-6 2.28.3.11.3.8769 OTU 2 seqs prokMSA_id:39985 gamma clone Arctic95B-19 AF353240 prokMSA_id:44003 gamma clone Arctic95B-8 2.28.3.11.3.8828 OTU 1 seq prokMSA_id:31898 Marinomonas sp. kbs18 2.28.3.11.3.8894 OTU 1 seq prokMSA_id:79615 clone ARKDMS-38 2.28.3.11.3.8950 OTU 1 seq prokMSA_id:70226 Marine Tw-1 2.28.3.11.3.9010 OTU 2 seqs prokMSA_id:79486 clone ZA3411c prokMSA_id:79531 clone ZA3313c 2.28.3.11.3.9127 OTU 1 seq prokMSA_id:79806 clone ARKIA-132 2.28.3.11.3.9131 OTU 1 seq prokMSA_id:38461 gamma clone:TYM--6 2.28.3.11.3.9351 OTU 1 seq prokMSA_id:79392 clone ZA2333c 2.28.3.11.3.9444 OTU 1 seq prokMSA_id:63249 clone FW23 2.28.3.11.3.9515 OTU 1 seq prokMSA_id:50527 Marinomonas SIC.129 2.28.3.11.3.9560 OTU 1 seq prokMSA_id:8202 clone HstpL70 2.28.3.11.3.9564 OTU 1 seq prokMSA_id:8206 Oceanospirillum jannaschii IFO 15466 2.28.3.11.3.9563 OTU 1 seq prokMSA_id:30213 Marinomonas sp. GOBB3-320 2.28.3.11.3.9580 OTU 1 seq prokMSA_id:25472 gamma MERTZ_2CM_175 2.28.3.11.3.9614 OTU 2 seqs prokMSA_id:8200 Oceanospirillum kriegii ATCC 27133 prokMSA_id:8201 Oceanospirillum kriegii IFO 15467 2.28.3.11.3.9634 OTU 1 seq prokMSA_id:8213 clone HstpL58 2.28.3.11.3.9650 OTU 1 seq prokMSA_id:8214 Marinomonas vaga ATCC 27119 2.28.3.11.3.9653 OTU 1 seq prokMSA_id:8216 clone HstpL38 2.28.3.12 ALCANIVORAX_AND_FUNDIBACTER_GROUP 60 seqs 2.28.3.12.8237 OTU 1 seq prokMSA_id:53763 gamma clone MPD-13 2.28.3.12.8335 OTU 1 seq prokMSA_id:28452 Alcanivorax sp. K3-3 2.28.3.12.8367 OTU 1 seq prokMSA_id:23790 Gamma KT0221 2.28.3.12.8434 OTU 28 seqs prokMSA_id:8229 Alcanivorax borkumensis str. SK2 DSM 11573 . Y12579 prokMSA_id:8230 Alcanivorax borkumensis str. LE4. AF062642 prokMSA_id:8231 str. ST1. AB005655 prokMSA_id:8232 Fundibacter jadensis str. T9. AJ001150 prokMSA_id:17943 gamma Arctic95B-15 AF354609 prokMSA_id:19155 gamma 0%N-26d-6 AF432314 prokMSA_id:20619 clone 4-Org2-35 prokMSA_id:30293 gamma Arctic96AD-24 AF354604 prokMSA_id:32531 clone 4-Org2-25 AF143832 prokMSA_id:33663 Alcanivorax sp. ST-T1 AB055206 prokMSA_id:35297 Alcanivorax borkumensis isolate ME103 AJ302701 prokMSA_id:36780 gamma 0%N-26d-48 AF432315 prokMSA_id:40587 Alcanivorax sp. K2-1 AB055204 prokMSA_id:40847 gamma Arctic96A-12 AF354610 prokMSA_id:41172 Alcanivorax sp. Cro1 AB053123 prokMSA_id:41476 gamma Arctic96BD-24 AF354603 prokMSA_id:45125 Alcanivorax sp. Shm-2 AB058675 prokMSA_id:48177 Alcanivorax sp. Mho1 AB053124 prokMSA_id:49307 Alcanivorax sp. Wf-1 AB055208 prokMSA_id:49326 Alcanivorax sp. Nag1 AB053122 prokMSA_id:77297 Alcanivorax sp. clone SR11d6 AF548762 prokMSA_id:77561 Alcanivorax sp. clone 1%N-6d-3 AF548763 prokMSA_id:79284 clone ZA3711c AF382125 prokMSA_id:82525 Marine arctic deep-sea HE12 prokMSA_id:97143 Alcanivorax sp. EPR 17 AY394875 prokMSA_id:97214 Alcanivorax sp. EPR 27 W AY394880 prokMSA_id:97257 Alcanivorax sp. EPR 19 AY394876 prokMSA_id:97776 Alcanivorax sp. EPR 20 AY394877 2.28.3.12.8441 OTU 1 seq prokMSA_id:20992 gamma MERTZ_2CM_38 2.28.3.12.8647 OTU 1 seq prokMSA_id:25089 gamma kpj53f 2.28.3.12.8772 OTU 6 seqs prokMSA_id:24418 Alcanivorax sp. TE-9 AB055207 prokMSA_id:72421 Alcanivorax sp. PR-1 AB053132 prokMSA_id:80125 Alcanivorax sp. B-5 prokMSA_id:88713 Alcanivorax sp. clone MBAE17 AJ567578 prokMSA_id:96374 Alcanivorax sp. EPR 10 AY394868 prokMSA_id:97379 Alcanivorax sp. EPR 6 AY394865 2.28.3.12.8844 OTU 8 seqs prokMSA_id:8233 str. POO-15 prokMSA_id:19510 gamma U78931 prokMSA_id:23132 Marine obligately oligotrophic POO-7 AB022205 prokMSA_id:24863 Marine obligately oligotrophic POO-3 AB022201 prokMSA_id:64885 Alcanivorax venusti strain ISO1 AF328761 prokMSA_id:68293 clone MN13BT4-47 AF361673 prokMSA_id:68301 clone MN12BT3-35 prokMSA_id:74819 Marine obligately oligotrophic POO-13 AB022208 2.28.3.12.8927 OTU 1 seq prokMSA_id:51048 gamma clone MPD-12 2.28.3.12.9043 OTU 4 seqs prokMSA_id:8234 clone OM60. U70696 prokMSA_id:62464 Gamma HTCC160 prokMSA_id:96552 Marine gamma HTCC2223 AY386336 prokMSA_id:96871 Marine gamma HTCC2080 AY386339 2.28.3.12.9075 OTU 1 seq prokMSA_id:49300 Marine obligately oligotrophic POO-9 2.28.3.12.9442 OTU 5 seqs prokMSA_id:49655 gamma MERTZ_0CM_226 prokMSA_id:59780 clone OB3_140 AY133412 prokMSA_id:59783 clone BB2_126 AY133409 prokMSA_id:91523 clone ANT18/2_88 AY135666 prokMSA_id:91662 clone ANT18/2_35 AY135664 2.28.3.12.9602 OTU 1 seq prokMSA_id:17600 Marine obligately oligotrophic POO-10 2.28.3.12.9658 OTU 1 seq prokMSA_id:16850 Alcanivorax sp. Haw1 2.28.3.13 PSEUDOMONAS_AND_RELATIVES 813 seqs 2.28.3.13.1 ACINETOBACTER_SUBGROUP 162 seqs 2.28.3.13.1.1 MRX.CATARRHALIS_SUBGROUP 94 seqs 2.28.3.13.1.1.8178 OTU 2 seqs prokMSA_id:52903 Psychrophilic marine PS03 complete and -23S intergenic space prokMSA_id:79201 UMB8G 2.28.3.13.1.1.8208 OTU 3 seqs prokMSA_id:8280 Moraxella caviae. X79220 prokMSA_id:8281 Moraxella caviae str. GP 11 CCUG 355 prokMSA_id:8282 Moraxella caviae str. GP 11 ATCC 14659 . AJ247220 2.28.3.13.1.1.8245 OTU 1 seq prokMSA_id:64956 Moraxellaceae OS3.5K-35 2.28.3.13.1.1.8281 OTU 3 seqs prokMSA_id:8296 Psychrobacter phenylpyruvicus NCTC 10526 . X74898 prokMSA_id:8297 Psychrobacter phenylpyruvicus ATCC 23333 prokMSA_id:8298 Moraxella phenylpyruvica str. 752/52. AF005192 2.28.3.13.1.1.8366 OTU 28 seqs prokMSA_id:8257 Psychrobacter QSSC5-4 str. QSSC5-4. AF170743 prokMSA_id:8305 Psychrobacter QSSC8-7 str. QSSC8-7 prokMSA_id:18681 Psychrobacter pacificensis strain:NIBH P2J13 prokMSA_id:24089 Psychrobacter pacificensis strain:NIBH P2J2 prokMSA_id:32985 Psychrobacter glacincola strain DSM 12194T AJ312213 prokMSA_id:33577 Psychrobacter pacificensis strain:NIBH P2K18 prokMSA_id:36033 Psychrobacter pacificensis strain:NIBH P2K17 prokMSA_id:39704 Marine psychrotrophic MstK25 strain MstK25 prokMSA_id:43031 Psychrobacter pacificensis strain:NIBH P2J3 prokMSA_id:43380 Psychrobacter aff. glacinola A1/C-aer/OII AJ297439 prokMSA_id:51114 Psychrobacter immobilis strain DSM 7229T prokMSA_id:51808 Psychrobacter pacificensis strain:NIBH P2K6=IFO 16279 prokMSA_id:62417 gamma clone FTL207 AF529097 prokMSA_id:63467 Psychrobacter sp. p3C AJ495805 prokMSA_id:69091 Psychrobacter sp. TAD1 strain TAD1 prokMSA_id:75020 Psychrobacter luti strain LMG 21276 AJ430828 prokMSA_id:75092 Psychrobacter glacincola strain LMG 21274 AJ430830 prokMSA_id:75780 Psychrobacter glacincola strain LMG 21273 AJ430829 prokMSA_id:77174 Psychrobacter fozii strain LMG 21280 prokMSA_id:79001 Psychrobacter sp. MJYP.15.12 prokMSA_id:79292 Gamma UMB3G prokMSA_id:79312 Psychrobacter glacialis strain DD43 AJ539102 prokMSA_id:79546 Gamma UMB21A prokMSA_id:79867 Arctic sea ice ARK9987 AF468405 prokMSA_id:80063 clone ARKCH4-25 AF468271 prokMSA_id:82102 Psychrobacter glacincola strain ANT9276b prokMSA_id:86349 Antarctic R-8160 strain R-8160 AJ440989 prokMSA_id:88187 Psychrobacter okhotskensis AB094794 2.28.3.13.1.1.8369 OTU 1 seq prokMSA_id:8249 Moraxella cuniculi CCUG 27179 2.28.3.13.1.1.8574 OTU 1 seq prokMSA_id:34561 Moraxella canis strain LMG 11186 P37 2.28.3.13.1.1.8582 OTU 2 seqs prokMSA_id:8253 Psychrobacter immobilis prokMSA_id:8255 Psychrobacter immobilis ACAM 286 2.28.3.13.1.1.8604 OTU 1 seq prokMSA_id:56708 Moraxella sp. ATCC 29468 strain:IAM 14971 2.28.3.13.1.1.8626 OTU 8 seqs prokMSA_id:8262 Moraxella osloensis str. 5873 prokMSA_id:8266 str. rJ3 prokMSA_id:8267 Moraxella osloensis str. Ben 58 prokMSA_id:8283 Moraxella sp. str. S2-11. X86616 prokMSA_id:30731 Gamma S-St0-7B prokMSA_id:63603 Moraxella osloensis prokMSA_id:72890 Moraxella osloensis strain PIV-10-1 prokMSA_id:86658 Enhydrobacter aerosaccus strain LMG 21877 2.28.3.13.1.1.8656 OTU 1 seq prokMSA_id:48597 Moraxella ovis 2.28.3.13.1.1.8710 OTU 2 seqs prokMSA_id:8259 Moraxella bovis ATCC 10900 prokMSA_id:8260 Moraxella bovis str. 5 2.28.3.13.1.1.8838 OTU 5 seqs prokMSA_id:79510 Psychrobacter salsus strain DD48 prokMSA_id:79652 Arctic sea ice ARK10012 AF468384 prokMSA_id:96330 Psychrobacter psychrophila isolate CMS 30 AJ584831 prokMSA_id:97236 Psychrobacter sp. DY9-2 AY383045 prokMSA_id:98657 Psychrobacter sp. 9-2 AY382586 2.28.3.13.1.1.8873 OTU 1 seq prokMSA_id:8254 Psychrobacter immobilis str. IC040 2.28.3.13.1.1.8878 OTU 10 seqs prokMSA_id:8265 Moraxella catarrhalis ATCC 25238 prokMSA_id:8278 Moraxella catarrhalis ATCC 25238 prokMSA_id:8279 Moraxella catarrhalis ATCC 25238 . AJ247218 prokMSA_id:8289 Moraxella catarrhalis. L13736 prokMSA_id:8295 Moraxella catarrhalis NCTC 11020 . X74903 prokMSA_id:28350 M.catarrhalis prokMSA_id:37189 Moraxella catarrhalis 3 AF192341 prokMSA_id:37220 Moraxella catarrhalis 1 AF192339 prokMSA_id:41825 Moraxella catarrhalis 2 AF192340 prokMSA_id:51485 Moraxella catarrhalis AJ247219 2.28.3.13.1.1.8897 OTU 1 seq prokMSA_id:19444 Moraxella lincolnii strain CCUG 9405T 2.28.3.13.1.1.8931 OTU 1 seq prokMSA_id:8261 Moraxella cuniculi CCUG 2154 2.28.3.13.1.1.8993 OTU 2 seqs prokMSA_id:8250 Moraxella atlantae str. 1922T prokMSA_id:20040 Moraxella atlantae strain 104/948 AJ312378 2.28.3.13.1.1.9087 OTU 3 seqs prokMSA_id:40637 antarctic soil clone bh5.53 prokMSA_id:54940 antarctic soil clone bh3.5 prokMSA_id:68934 antarctic soil clone bh1.11 AF417867 2.28.3.13.1.1.9110 OTU 15 seqs prokMSA_id:21208 Psychrobacter sp. SKA18 AF261040 prokMSA_id:24648 Psychrobacter marincola strain KMM 277 prokMSA_id:27945 Psychrobacter submarinus strain KMM 225 prokMSA_id:68772 Glacial ice Trans12 prokMSA_id:78979 Psychrobacter sp. 2216.25.11 AB094460 prokMSA_id:79638 Arctic sea ice ARK10000 prokMSA_id:80205 clone:OHKB11.18 prokMSA_id:93270 Psychrobacter sp. mp2 isolate mp2 AJ551116 prokMSA_id:93441 Psychrobacter sp. wp37 isolate wp37 AJ551112 prokMSA_id:93479 Psychrobacter sp. es3 isolate es3 AJ551125 prokMSA_id:93494 Pseudomonas sp. wp33 isolate wp33 AJ551110 prokMSA_id:93781 Hyphomicrobium sp. wp14 isolate wp14 AJ551095 prokMSA_id:93964 Psychrobacter sp. es5 isolate es5 AJ551127 prokMSA_id:94032 Psychrobacter sp. mp9 isolate mp9 AJ551122 prokMSA_id:94097 Psychrobacter sp. wp16 isolate wp16 AJ551096 2.28.3.13.1.1.9573 OTU 3 seqs prokMSA_id:28643 Psychrobacter sp. ikaite c11 isolate ikaite c11 AJ431338 prokMSA_id:74450 Psychrobacter faecalis strain Iso-46 AJ421528 prokMSA_id:85442 Psychrobacter pulmonis strain CECT 5989T 2.28.3.13.1.5 ACN.CALCOACETICUS_SUBGROUP 1 seq 2.28.3.13.1.5.8565 OTU 1 seq prokMSA_id:8315 Acinetobacter sp. str. 942 2.28.3.13.1.6 ACN.BAUMANNII_SUBGROUP 3 seqs 2.28.3.13.1.6.8619 OTU 1 seq prokMSA_id:8322 Acinetobacter sp. DSM 587 2.28.3.13.1.6.8796 OTU 2 seqs prokMSA_id:8320 clone T58 prokMSA_id:8321 clone T23 2.28.3.13.1.7 ACN.LWOFFII_SUBGROUP 64 seqs 2.28.3.13.1.7.8203 OTU 1 seq prokMSA_id:34411 clone BIfciv2 2.28.3.13.1.7.8727 OTU 1 seq prokMSA_id:84904 Alkanindiges hongkongensis 2.28.3.13.1.7.8790 OTU 1 seq prokMSA_id:30973 Marine obligately oligotrophic POO-6 2.28.3.13.1.7.9063 OTU 1 seq prokMSA_id:30013 GR-B1-2-35 clone GR-B1-2-35 2.28.3.13.1.7.9359 OTU 47 seqs prokMSA_id:8310 Acinetobacter calcoaceticus ATCC 33604 prokMSA_id:8311 Acinetobacter calcoaceticus str. group one ATCC 23055 prokMSA_id:8312 Acinetobacter sp. str. Ben 59. X95305 prokMSA_id:8313 Acinetobacter sp. str. Group TU14 ATCC 17905 prokMSA_id:8314 Acinetobacter sp. str. 382 prokMSA_id:8318 Acinetobacter baumannii str. IGSchaub Biol 1 DSM 30008. X816 prokMSA_id:8326 Acinetobacter baumannii str. 2208 DSM 30007 . X81660 prokMSA_id:8327 Acinetobacter junii str. 2723/59 DSM 6964 . X81664 prokMSA_id:8330 clone T27. Z93987 prokMSA_id:8333 Acinetobacter 'SMCC B0445' SMCC B0445. U87125 prokMSA_id:8334 str. HTC042. AB010848 prokMSA_id:8335 str. HTC038. AB010849 prokMSA_id:8336 Acinetobacter junii DSM 1532. X81658 prokMSA_id:8342 Acinetobacter sp. DSM 590 prokMSA_id:8343 Acinetobacter OM-E81 str. OM-H10 prokMSA_id:8344 Acinetobacter sp. str. Group ten ATCC 17924 prokMSA_id:8347 Acinetobacter radioresistens str. FO-1 DSM 6976 . X81666 prokMSA_id:8349 Acinetobacter sp. str. M 17694. Z93445 prokMSA_id:8386 Acinetobacter johnsonii. X89775 prokMSA_id:17792 Acinetobacter junii AF417863 prokMSA_id:18584 O11F12 AF220313 prokMSA_id:29502 Acinetobacter sp. ST-550 AB062283 prokMSA_id:30135 Acinetobacter sp. IrT-R5M2-7 prokMSA_id:31677 Acinetobacter sp. Sea-12 AF392991 prokMSA_id:31911 clone AF1.3 prokMSA_id:33723 O18A5 AF220328 prokMSA_id:36199 Acinetobacter venetianus strain ATCC 31012 AJ295007 prokMSA_id:43948 Acinetobacter sp. strain ATCC 11171 prokMSA_id:48977 Acinetobacter sp. BC187 prokMSA_id:49347 Acinetobacter sp. Sea-9 AF390087 prokMSA_id:52109 Acinetobacter sp. phenon 3 strain LUH1742T Aci651 prokMSA_id:56588 clone Phe66 prokMSA_id:58796 Acinetobacter sp. ATCC 31012 AF542963 prokMSA_id:60333 clone Phe12 prokMSA_id:60335 clone Phe100 prokMSA_id:60337 clone Nap34 prokMSA_id:60341 clone Glu57 prokMSA_id:61831 gamma clone CLi289 prokMSA_id:62949 Acinetobacter radioresistens strain 50v1 rrn AF526908 prokMSA_id:70076 Acinetobacter sp. phenon 2 strain LUH 4591 AJ275040 prokMSA_id:70104 O11G12 AF220315 prokMSA_id:78070 gamma clone:APe9_1 prokMSA_id:78191 gamma clone:Ape4_17 AB074592 prokMSA_id:79198 Acinetobacter junii complete strain:S33 AB101444 prokMSA_id:87534 Acinetobacter genomosp. C1 AY278636 prokMSA_id:94043 Acinetobacter sp. An17 isolate An17 AJ551155 prokMSA_id:96760 Acinetobacter sp. BCH290703A AY380830 2.28.3.13.1.7.9404 OTU 1 seq prokMSA_id:19349 Acinetobacter sp. EVA13 strain EVA13 2.28.3.13.1.7.9428 OTU 1 seq prokMSA_id:69970 clone AF2-1D 2.28.3.13.1.7.9447 OTU 1 seq prokMSA_id:63614 Acinetobacter sp. AU1523 2.28.3.13.1.7.9466 OTU 1 seq prokMSA_id:56661 Acinetobacter tandoii 2.28.3.13.1.7.9483 OTU 1 seq prokMSA_id:8387 clone T39 2.28.3.13.1.7.9641 OTU 8 seqs prokMSA_id:8351 Acinetobacter haemolyticus DSM 6962 prokMSA_id:31749 Acinetobacter haemolyticus strain ATCC 17906T prokMSA_id:64652 Acinetobacter sp. clone 91_11 prokMSA_id:64656 Acinetobacter sp. clone 88_17 prokMSA_id:64658 Acinetobacter sp. clone 91_28 prokMSA_id:64662 Acinetobacter sp. clone 91_18 prokMSA_id:64666 Acinetobacter sp. clone 349_19 prokMSA_id:72138 Acinetobacter sp. clone 349_15 2.28.3.13.2 TEREDINIBACTER_SUBGROUP 18 seqs 2.28.3.13.2.8204 OTU 1 seq prokMSA_id:27115 Gamma EHK-1 2.28.3.13.2.8491 OTU 1 seq prokMSA_id:80469 clone ARKDMS-49 2.28.3.13.2.8517 OTU 1 seq prokMSA_id:36509 marine ZD0117 2.28.3.13.2.8813 OTU 1 seq prokMSA_id:77437 Symbiont LP2 of Lyrodus pedicellatus 2.28.3.13.2.8891 OTU 2 seqs prokMSA_id:64893 Clostridiaceae pT-428 prokMSA_id:74482 Clostridiaceae pT-427 2.28.3.13.2.9061 OTU 1 seq prokMSA_id:50315 gamma TIHP368-52 2.28.3.13.2.9134 OTU 1 seq prokMSA_id:8404 Microbulbifer hydrolyticus str. IRE-31 2.28.3.13.2.9152 OTU 1 seq prokMSA_id:8405 str. SCB11 2.28.3.13.2.9158 OTU 1 seq prokMSA_id:8406 Microbulbifer 2-40 str. 2-40 2.28.3.13.2.9159 OTU 1 seq prokMSA_id:8407 str. BD2-13 2.28.3.13.2.9163 OTU 1 seq prokMSA_id:8408 str. NKB4 2.28.3.13.2.9169 OTU 1 seq prokMSA_id:8409 Endobugula sertula str. BnPV 2.28.3.13.2.9272 OTU 1 seq prokMSA_id:38752 Pseudomonas sp. ND137 2.28.3.13.2.9300 OTU 1 seq prokMSA_id:77433 Symbiont LP1 of Lyrodus pedicellatus 2.28.3.13.2.9336 OTU 1 seq prokMSA_id:39706 Unclassified Pseudomonas group 2.28.3.13.2.9622 OTU 2 seqs prokMSA_id:39120 gamma HOC2 prokMSA_id:52455 gamma HOC27 2.28.3.13.4 PS.OLEOVORANS 2 seqs 2.28.3.13.4.9389 OTU 2 seqs prokMSA_id:8413 Pseudomonas oleovorans IAM 1508 prokMSA_id:71549 Pseudomonas oleovorans complete 2.28.3.13.5 PS.AERUGINOSA_SUBGROUP 75 seqs 2.28.3.13.5.8487 OTU 1 seq prokMSA_id:8443 Pseudomonas aeruginosa str. CW-96-1 2.28.3.13.5.8508 OTU 6 seqs prokMSA_id:8426 Pseudomonas citronellolis DSM 50332 prokMSA_id:8427 Pseudomonas citronellolis ATCC 13674 prokMSA_id:8428 str. A3 prokMSA_id:32513 Pseudomonas sp. AT2 prokMSA_id:58403 Pseudomonas sp. WAS2 prokMSA_id:70116 Pseudomonas citronellolis strain TERIDB26 complete 2.28.3.13.5.8691 OTU 38 seqs prokMSA_id:8435 Pseudomonas aeruginosa LMG 1242 prokMSA_id:8437 Pseudomonas aeruginosa prokMSA_id:8438 unnamed organism prokMSA_id:8441 clone SJA-38 prokMSA_id:8442 clone SJA-64 prokMSA_id:8444 Pseudomonas aeruginosa str. AL98 prokMSA_id:8446 Pseudomonas aeruginosa str. 86351 prokMSA_id:8448 str. BD1-3 prokMSA_id:8449 str. BD3-13. AB015554 prokMSA_id:8450 str. BD4-16 prokMSA_id:8452 str. BD6-3 prokMSA_id:8454 str. JTB12 prokMSA_id:8455 Pseudomonas Bu34 str. Bu34 prokMSA_id:16918 Pseudomonas aeruginosa strain:#790 prokMSA_id:18018 Pseudomonas aeruginosa complete prokMSA_id:30696 Pseudomonas aeruginosa prokMSA_id:31055 Pseudomonas aeruginosa strain:#129 prokMSA_id:33622 Pseudomonas aeruginosa strain:#797 prokMSA_id:35045 Pseudomonas aeruginosa strain ATCC 10145 prokMSA_id:38254 Pseudomonas aeruginosa strain:H636 prokMSA_id:43659 Pseudomonas aeruginosa strain:#985-02 prokMSA_id:44181 str. 61716 prokMSA_id:45396 Pseudomonas sp. strain OLB-1 prokMSA_id:50970 Pseudomonas aeruginosa prokMSA_id:51883 Pseudomonas aeruginosa strain:#796 prokMSA_id:52590 Pseudomonas aeruginosa strain:#649 prokMSA_id:52867 Pseudomonas aeruginosa strain:H707 prokMSA_id:59263 Pseudomonas aeruginosa PA01 section 62 of 529 of the complet prokMSA_id:61832 gamma clone CLi288 prokMSA_id:62409 gamma clone FTL229 prokMSA_id:70154 P.aeruginosa strain DSM 50071T prokMSA_id:70447 Pseudomonas aeruginosa strain ATCC 33350 prokMSA_id:71400 Pseudomonas aeruginosa strain ATCC 27316 prokMSA_id:73809 Pseudomonas aeruginosa strain ATCC 27853 prokMSA_id:74648 Pseudomonas aeruginosa strain:H706 prokMSA_id:76656 Pseudomonas aeruginosa strain BHP7-6 prokMSA_id:78808 Pseudomonas thermaerum prokMSA_id:81887 Pseudomonas aeruginosa isolate OK1 2.28.3.13.5.8754 OTU 5 seqs prokMSA_id:8417 str. rJ11 prokMSA_id:8418 str. rJ17 prokMSA_id:8419 str. IpA-1 prokMSA_id:20529 Pseudomonas sp. P400Y-1 prokMSA_id:35995 Pseudomonas sp. isolate ON3 2.28.3.13.5.8802 OTU 1 seq prokMSA_id:46393 Cellvibrio sp. R4069 2.28.3.13.5.8918 OTU 1 seq prokMSA_id:71972 sp. Lake Elmenteita isolate 45E3 2.28.3.13.5.9002 OTU 5 seqs prokMSA_id:29570 Paederus melanurus endosymbiont prokMSA_id:30919 Paederidus ruficollis endosymbiont prokMSA_id:34658 Paederus riparius endosymbiont prokMSA_id:37950 Paederus sabaeus endosymbiont prokMSA_id:46183 Paederus fuscipes endosymbiont 2.28.3.13.5.9056 OTU 16 seqs prokMSA_id:8431 Pseudomonas sp. str. CRE 11 prokMSA_id:8440 Pseudomonas aeruginosa. AF137358 prokMSA_id:8451 str. BD5-7 prokMSA_id:21740 Pseudomonas aeruginosa strain:#777 prokMSA_id:24949 Pseudomonas aeruginosa strain:ATCC 27853 prokMSA_id:36294 Pseudomonas aeruginosa DL1 prokMSA_id:41268 Pseudomonas aeruginosa strain:#985 AB037556 prokMSA_id:47079 Pseudomonas aeruginosa strain:#47 prokMSA_id:49042 prokMSA_id:52395 Pseudomonas aeruginosa strain:#780 prokMSA_id:59706 Pseudomonas aeruginosa complete prokMSA_id:64390 Pseudomonas sp. Gu5828 prokMSA_id:72949 Pseudomonas aeruginosa strain ATCC 4207 prokMSA_id:85661 Pseudomonas aeruginosa complete prokMSA_id:85816 Pseudomonas aeruginosa prokMSA_id:88574 Pseudomonas aeruginosa strain ATCC 27853 AY268175 2.28.3.13.5.9074 OTU 1 seq prokMSA_id:43286 sp. Lake Nakuru isolate 52N3 2.28.3.13.5.9588 OTU 1 seq prokMSA_id:61102 Pseudomonas citronellolis strain TERIDB18 complete 2.28.3.13.6 AZO.VINELANDII 1 seq 2.28.3.13.6.8628 OTU 1 seq prokMSA_id:43151 clone KS38 2.28.3.13.7 PS.STUTZERI_SUBGROUP 35 seqs 2.28.3.13.7.8215 OTU 1 seq prokMSA_id:44798 Pseudomonas sp. Loihi-Chm-9 2.28.3.13.7.8288 OTU 1 seq prokMSA_id:49890 Halomonas sp. Loihi-Chm-8 2.28.3.13.7.8549 OTU 1 seq prokMSA_id:43178 Pseudomonas sp. Loihi-Chm-10 2.28.3.13.7.8760 OTU 1 seq prokMSA_id:8513 clone HstpL23 2.28.3.13.7.8777 OTU 2 seqs prokMSA_id:8500 Pseudomonas PK str. PK prokMSA_id:71836 Pseudomonas sp. KNA6-5 2.28.3.13.7.8852 OTU 12 seqs prokMSA_id:8498 Pseudomonas stutzeri str. KC prokMSA_id:8499 Pseudomonas stutzeri str. WM88 prokMSA_id:8502 Pseudomonas stutzeri str. KC. AF063219 prokMSA_id:18824 Pseudomonas stutzeri strain 11C2 prokMSA_id:22736 Pseudomonas stutzeri strain 3C59 prokMSA_id:25407 Pseudomonas chloritidismutans prokMSA_id:60916 Pseudomonas stutzeri strain 24a51 prokMSA_id:60917 Pseudomonas stutzeri strain 24a43 prokMSA_id:60920 Pseudomonas stutzeri strain 24a97 prokMSA_id:60925 Pseudomonas stutzeri strain 20G prokMSA_id:72822 Pseudomonas stutzeri strain 24a112 prokMSA_id:87959 Pseudomonas stutzeri strain 4C74 AJ312160 2.28.3.13.7.8988 OTU 1 seq prokMSA_id:29864 gamma clone R187 2.28.3.13.7.9068 OTU 1 seq prokMSA_id:8477 Pseudomonas stutzeri str. A1501 2.28.3.13.7.9228 OTU 1 seq prokMSA_id:76785 Pseudomonas stutzeri isolate HY-105 2.28.3.13.7.9280 OTU 1 seq prokMSA_id:8488 Pseudomonas mendocina str. KR 2.28.3.13.7.9295 OTU 11 seqs prokMSA_id:8471 Pseudomonas fragi IAM 12402 prokMSA_id:8476 Pseudomonas stutzeri str. Stanier 221 CCUG 11256 . U26262 prokMSA_id:8489 Pseudomonas stutzeri str. DNSP21 DSM 6082 prokMSA_id:8496 Pseudomonas stutzeri str. Stanier 222 ATCC 17589. U25432 prokMSA_id:19945 Nitrogen-fixing MIS prokMSA_id:41253 Pseudomonas stutzeri strain phen8 complete prokMSA_id:48469 Pseudomonas stutzeri prokMSA_id:64654 Pseudomonas sp. clone 349_11 prokMSA_id:71825 Pseudomonas fragi complete D84014 prokMSA_id:91116 K65 AY345461 prokMSA_id:91395 K2-20 AY345431 2.28.3.13.7.9297 OTU 1 seq prokMSA_id:48401 Azotobacter beijerinckii isolate ICMP 8673; ATCC 19360 2.28.3.13.7.9540 OTU 1 seq prokMSA_id:71026 Teredinibacter turnerae 2.28.3.13.8 PS.MENDOCINA_SUBGROUP 58 seqs 2.28.3.13.8.8344 OTU 1 seq prokMSA_id:55384 UNSW3 2.28.3.13.8.8553 OTU 8 seqs prokMSA_id:8517 Pseudomonas mendocina LMG 1223 prokMSA_id:39176 Pseudomonas sp. HMD H5 prokMSA_id:62345 Pseudomonas straminea strain:IAM 1587 prokMSA_id:66624 Pseudomonas sp. SMCC B0138 prokMSA_id:70462 Pseudomonas mendocina isolate ICMP 13540; ATCC 25411 AJ30831 prokMSA_id:71894 P.mendocina strain DSM 50017T prokMSA_id:91103 JB17 AY345382 prokMSA_id:91717 K49 AY345470 2.28.3.13.8.8725 OTU 2 seqs prokMSA_id:47897 Pseudomonas sp. 2N1-1 prokMSA_id:75837 gamma clone Gitt-KF-67 2.28.3.13.8.8827 OTU 1 seq prokMSA_id:8525 Pseudomonas pseudoalcaligenes str. ML-A04 2.28.3.13.8.8831 OTU 2 seqs prokMSA_id:27037 Pseudomonas sp. 2FB9 prokMSA_id:87080 Pseudomonas stutzeri strain 24a75 AJ312229 2.28.3.13.8.8850 OTU 1 seq prokMSA_id:8531 Agrobacterium agile IAM 12615 2.28.3.13.8.8859 OTU 3 seqs prokMSA_id:44232 Sulfide-oxidizing N9-1 AF393509 prokMSA_id:82664 clone CARB_ESS_2 prokMSA_id:83437 clone CARB_ESS_10 2.28.3.13.8.8868 OTU 1 seq prokMSA_id:8532 Azotobacter chroococcum ATCC 9043 2.28.3.13.8.9037 OTU 2 seqs prokMSA_id:25543 clone T12-4 AF332355 prokMSA_id:66758 Pseudomonas sp. AST1 2.28.3.13.8.9050 OTU 1 seq prokMSA_id:53970 Pseudomonas sp. ML-124 2.28.3.13.8.9238 OTU 33 seqs prokMSA_id:8516 Pseudomonas mendocina ATCC 25413 prokMSA_id:8520 Pseudomonas pseudoalcaligenes subsp. pseudoalcaligenes LMG 1 prokMSA_id:8526 Pseudomonas pseudoalcaligenes str. ML-A02 prokMSA_id:8528 Pseudomonas pseudoalcaligenes str. ML-052 prokMSA_id:8530 str. HTB147 prokMSA_id:8534 str. HTB110 prokMSA_id:8535 str. HTB139. AB010852 prokMSA_id:8536 str. HTB095 prokMSA_id:8543 str. LE1 prokMSA_id:22044 Saltmarsh clone LCP-79 prokMSA_id:26691 Pseudomonas mendocina prokMSA_id:32340 Elbe River snow isolate Iso6 prokMSA_id:33037 Pseudomonas alcalophila prokMSA_id:34621 Pseudomonas sp. GP11 prokMSA_id:44974 Pseudomonas sp. SMCC D0715 prokMSA_id:56329 Pseudomonas sp. SMCC B0310 prokMSA_id:57400 Pseudomonas sp. K50 prokMSA_id:66615 Pseudomonas sp. SMCC B0252 prokMSA_id:66616 Pseudomonas sp. SMCC B0280 prokMSA_id:66618 Pseudomonas sp. SMCC B0259 prokMSA_id:66619 Pseudomonas sp. SMCC B0251 prokMSA_id:66623 Pseudomonas sp. SMCC B0205 prokMSA_id:66759 Pseudomonas sp. SMCC B0307 prokMSA_id:67521 Pseudomonas nitroreducens strain 0802 prokMSA_id:67862 Pseudomonas sp. clone DGG18 prokMSA_id:70216 Pseudomonas pseudoalcaligenes prokMSA_id:72702 Pseudomonas mendocina complete prokMSA_id:73478 Pseudomonas cf. pseudoalcaligenes prokMSA_id:73717 P.pseudoalcaligenes strain DSM 50018T prokMSA_id:73739 Pseudomonas oleovorans prokMSA_id:79844 Pseudomonas sp. P_wp0231 prokMSA_id:83866 Pseudomonas alcalophila prokMSA_id:88854 gamma clone HN4-26 AY221605 2.28.3.13.8.9424 OTU 1 seq prokMSA_id:71406 Pseudomonas sp. PCP2 2.28.3.13.8.9561 OTU 1 seq prokMSA_id:30870 Azorhizophilus paspali isolate ICMP 7469; ATCC 23833 2.28.3.13.8.9638 OTU 1 seq prokMSA_id:56532 clone SHA-35 2.28.3.13.11 PS.STRAMINEA_SUBGROUP 5 seqs 2.28.3.13.11.9005 OTU 1 seq prokMSA_id:66199 Pseudomonas sp. strain KY 2.28.3.13.11.9599 OTU 1 seq prokMSA_id:8561 IAM 12023 2.28.3.13.11.9613 OTU 2 seqs prokMSA_id:8562 Pseudomonas flavescens str. B62 NCPPB 3063 prokMSA_id:52398 Pseudomonas flavescens isolate ICMP 13539; ATCC 51555 AJ3083 2.28.3.13.11.9618 OTU 1 seq prokMSA_id:8563 clone SRang1.28 2.28.3.13.12 PS.LUTEOLA_SUBGROUP 4 seqs 2.28.3.13.12.9258 OTU 1 seq prokMSA_id:57488 Gamma Y-134 2.28.3.13.12.9520 OTU 3 seqs prokMSA_id:8566 Pseudomonas luteola IAM 13000 prokMSA_id:25281 Pseudomonas sp. 13BT prokMSA_id:70387 Chryseomonas luteola complete 2.28.3.13.13 PS.PUTIDA_SUBGROUP 114 seqs 2.28.3.13.13.8474 OTU 1 seq prokMSA_id:75843 gamma clone S15A-MN7 2.28.3.13.13.8513 OTU 8 seqs prokMSA_id:8588 Pseudomonas monteilii str. CFML 90-60 CIP 104883 prokMSA_id:8594 Pseudomonas putida str. A10L prokMSA_id:8595 Pseudomonas putida str. BH. D85996 prokMSA_id:8599 Pseudomonas plecoglossicida str. FPC951 prokMSA_id:28946 Pseudomonas putida prokMSA_id:37877 Pseudomonas putida strain ATCC 17390 prokMSA_id:46291 Pseudomonas putida prokMSA_id:66895 Pseudomonas sp. HR 13 2.28.3.13.13.8540 OTU 3 seqs prokMSA_id:8598 Pseudomonas MBIC2027 str. MBIC2027 prokMSA_id:28224 S17sBac13 complete prokMSA_id:75047 Pseudomonas sp. HY-95/2-1 isolate HY-95/2-1 2.28.3.13.13.8685 OTU 1 seq prokMSA_id:25527 Cellvibrio fulvus NCIMB 8634 2.28.3.13.13.8786 OTU 1 seq prokMSA_id:73539 Cellvibrio sp. R4075 2.28.3.13.13.9049 OTU 1 seq prokMSA_id:32552 GR-Sh2-34 clone GR-Sh2-34 2.28.3.13.13.9193 OTU 1 seq prokMSA_id:25966 gamma MERTZ_2CM_319 2.28.3.13.13.9219 OTU 91 seqs prokMSA_id:8570 Pseudomonas fuscovaginae MAFF 301177 prokMSA_id:8580 Pseudomonas putida DSM 291 . Z76667 prokMSA_id:8591 Pseudomonas SF1 str. SF1 prokMSA_id:8592 str. R1 prokMSA_id:8596 Pseudomonas putida str. MnB1 prokMSA_id:8603 Pseudomonas mosselii CIP 105259 prokMSA_id:8609 Pseudomonas amygdali str. L7 LMG 5694 . Z76661 prokMSA_id:8633 Pseudomonas viridiflava LMG 2352 prokMSA_id:8647 Pseudomonas ficuserectae JCM 2400. AB021378 prokMSA_id:8657 Pseudomonas chlororaphis LMG 5004 . Z76657 prokMSA_id:8659 Pseudomonas coronafaciens LMG 13190. Z76660 prokMSA_id:8708 str. A177. U85870 prokMSA_id:8736 Pseudomonas fluorescens DSM 50090 . Z76662 prokMSA_id:8754 Pseudomonas sp. Y1000 X99676 prokMSA_id:8771 Pseudomonas QSSC1-9 str. QSSC1-9 prokMSA_id:8784 Pseudomonas agarici LMG 2112 . Z76652 prokMSA_id:8786 Pseudomonas agarici ATCC 25941 . D84005 prokMSA_id:8787 Pseudomonas graminis str. P 294/08 DSM 11363 . Y11150 prokMSA_id:19059 Pseudomonas sp. SV16 AF251336 prokMSA_id:21401 Pseudomonas putida strain Biotype A prokMSA_id:21746 Pseudomonas sp. ADP prokMSA_id:21815 Pseudomonas gingeri prokMSA_id:21829 Pseudomonas graminis strain JPL-8 AY030316 prokMSA_id:25113 Pseudomonas putida strain ATCC 17485 prokMSA_id:26064 Pseudomonas sp. NZ059 AY014812 prokMSA_id:27902 Pseudomonas sp. WBC-3 prokMSA_id:29172 Pseudomonas putida strain ATCC 17453 AF094746 prokMSA_id:29593 Pseudomonas cf. monteilii prokMSA_id:29844 Pseudomonas putida strain ATCC 17514 AF094741 prokMSA_id:30129 Pseudomonas putida strain Biotype A AJ308313 prokMSA_id:30528 Pseudomonas sp. NZ047 AY014810 prokMSA_id:33137 Pseudomonas putida strain ATCC 17494 AF094740 prokMSA_id:33976 Pseudomonas putida complete prokMSA_id:34665 sheep mite Welshpool 59 prokMSA_id:37815 Pseudomonas gingeri strain NCPPB 3146 AF332511 prokMSA_id:38466 Pseudomonas sp. ML2 prokMSA_id:41791 Arthrobacter siderocapsulatus complete AF226713 prokMSA_id:42527 Blackwater bioreactor BW32 prokMSA_id:43780 Pseudomonas sp. SV4 prokMSA_id:46435 Pseudomonas sp. LAB-27 AB051701 prokMSA_id:48399 Pseudomonas sp. KF/GS-Gitt2-41 prokMSA_id:51733 Pseudomonas agarici isolate ICMP 2656 prokMSA_id:53552 Pseudomonas putida strain ATCC 11172 prokMSA_id:56604 Pseudomonas viridiflava strain NZCX09 prokMSA_id:59723 Pseudomonas sp. WDL5 prokMSA_id:60438 Pseudomonas sp. Fa4 prokMSA_id:60439 Pseudomonas sp. Fa20 prokMSA_id:64655 Pseudomonas sp. clone burs_26 prokMSA_id:65390 Pseudomonas graminis isolate HhSaOsb AF511514 prokMSA_id:65395 Pseudomonas sp. SaU6sm AF511509 prokMSA_id:65396 Pseudomonas sp. SaU7 prokMSA_id:65399 Pseudomonas sp. SaO3 AF511508 prokMSA_id:65400 Pseudomonas fluorescens prokMSA_id:66755 Pseudomonas sp. SMCC B0608 AF501877 prokMSA_id:66814 Pseudomonas sp. dcm5B prokMSA_id:67339 Pseudomonas sp. HhSoUsc AY089990 prokMSA_id:67416 Pseudomonas palleroniana AY091527 prokMSA_id:70197 Pseudomonas chlororaphis isolate ICMP 13613; ATCC 9446 AJ308 prokMSA_id:71222 Pseudomonas sp. NZ092 AY014816 prokMSA_id:72079 Pseudomonas syringae isolate ICMP 3023; ATCC 19310 AJ308316 prokMSA_id:72969 Pseudomonas putida strain P1 prokMSA_id:73091 Pseudomonas putida strain ATCC 12633 AF094736 prokMSA_id:73648 Pseudomonas sp. NZ043 prokMSA_id:73990 Pseudomonas agarici D84005 prokMSA_id:74050 Pseudomonas alcaligenes prokMSA_id:74089 Pseudomonas putida strain GPo1 prokMSA_id:74199 Pseudomonas putida strain ATCC 17642 prokMSA_id:75144 Pseudomonas putida KT2440 section 3 of 21 of the complete ge prokMSA_id:75350 Pseudomonas putida KT2440 section 5 of 21 of the complete ge prokMSA_id:75962 Pseudomonas sp. STB17 AY162140 prokMSA_id:76313 Pseudomonas putida KT2440 section 2 of 21 of the complete ge prokMSA_id:76537 Pseudomonas sp. BW11M1 prokMSA_id:76538 Pseudomonas putida KT2440 section 18 of 21 of the complete g prokMSA_id:77022 Pseudomonas putida KT2440 section 1 of 21 of the complete ge prokMSA_id:78525 Pseudomonas viridiflava strain LPPA 144 AY180968 prokMSA_id:78571 Pseudomonas rhizosphaerae complete prokMSA_id:78774 Pseudomonas viridiflava strain LPPA 139 AY180967 prokMSA_id:78852 Pseudomonas viridiflava strain CECT 458 AY180972 prokMSA_id:78951 Pseudomonas viridiflava strain LPPA 84 AY180971 prokMSA_id:84327 Pseudomonas putida strain:KF703 prokMSA_id:84758 Pseudomonas sp. 4/11SKenr22# prokMSA_id:85824 Pseudomonas putida complete strain:NA3 prokMSA_id:86435 Pseudomonas putida strain:KF715 prokMSA_id:89243 Pseudomonas sp. KL28 AY324319 prokMSA_id:89310 Pseudomonas sp. KR9 AY327816 prokMSA_id:91631 Pseudomonas sp. K2 AF532866 prokMSA_id:91834 Pseudomonas filiscindens ; -23S intergenic spacer complete ; prokMSA_id:92897 Pseudomonas sp. WSCIII AY344806 prokMSA_id:93278 Pseudomonas sp. An7 isolate An7 AJ551146 prokMSA_id:93773 Pseudomonas lutea strain OK2 AY364537 prokMSA_id:98066 Pseudomonas putida AY395005 2.28.3.13.13.9343 OTU 2 seqs prokMSA_id:26354 Cellvibrio mixtus subsp. mixtus ACM 2601 prokMSA_id:48811 Cellvibrio mixtus subsp. mixtus strain ACM 2603 2.28.3.13.13.9422 OTU 1 seq prokMSA_id:30985 Cellvibrio sp. R4079 2.28.3.13.13.9469 OTU 1 seq prokMSA_id:37108 sheep mite Llangefni 52 2.28.3.13.13.9493 OTU 1 seq prokMSA_id:66813 Pseudomonas sp. dcm7B 2.28.3.13.13.9509 OTU 1 seq prokMSA_id:27805 clone Car16fa 2.28.3.13.13.9553 OTU 1 seq prokMSA_id:52677 Cellvibrio sp. R4001 2.28.3.13.14 PSEUDOMONAS_SUBGROUP 334 seqs 2.28.3.13.14.1 PS.AMYGDALI_SUBGROUP 140 seqs 2.28.3.13.14.1.8209 OTU 2 seqs prokMSA_id:65567 yard-trimming-compost clone S-23 prokMSA_id:76301 gamma clone JG37-AG-122 2.28.3.13.14.1.8263 OTU 1 seq prokMSA_id:40180 Pseudomonas migulae 2.28.3.13.14.1.8433 OTU 88 seqs prokMSA_id:8611 Pseudomonas caricapapayae ATCC 33615 prokMSA_id:8613 Pseudomonas PsJ str. PsJ prokMSA_id:8614 Pseudomonas PsG str. PsG prokMSA_id:8615 Pseudomonas PsE str. PsE prokMSA_id:8616 Pseudomonas PsD str. PsD prokMSA_id:8617 Pseudomonas PsB str. PsB prokMSA_id:8618 Pseudomonas PsA str. PsA prokMSA_id:8620 Pseudomonas corrugata ATCC 29736 prokMSA_id:8622 Pseudomonas brassicacearum str. DBK11 CFBP 11706 prokMSA_id:8639 Pseudomonas syringae subsp. syringae str. pathovar reference prokMSA_id:8641 Pseudomonas J1 str. J1 prokMSA_id:8648 Pseudomonas syringae ATCC 13522 prokMSA_id:8653 Pseudomonas mandelii CIP 105273 prokMSA_id:8658 Pseudomonas meliae MAFF 301463 prokMSA_id:8674 Pseudomonas PsI str. PsI prokMSA_id:8675 Pseudomonas PsH str. PsH prokMSA_id:8680 Pseudomonas brassicacearum str. NFM421 CFBP 11874 prokMSA_id:8681 Pseudomonas thivervalensis str. SBK26 CFBP 11261 prokMSA_id:8690 Pseudomonas DhA-91 str. DhA-91 prokMSA_id:8697 str. 35L prokMSA_id:8702 Pseudomonas aureofaciens DSM 6698 prokMSA_id:8741 Pseudomonas chlororaphis IFO 3904 prokMSA_id:16541 Pseudomonas syringae pv. phaseolicola prokMSA_id:17462 Pseudomonas migulae prokMSA_id:19236 Pseudomonas lini prokMSA_id:19470 Pseudomonas sp. NZ017 prokMSA_id:20085 Pseudomonas sp. MG1 prokMSA_id:20629 Pseudomonas syringae pv. broussonetiae prokMSA_id:20653 Pseudomonas sp. CM1'A2 strain CM1'A2 prokMSA_id:21916 Pseudomonas fluorescens strain F113 prokMSA_id:22611 Pseudomonas sp. PITR2 strain PITR2 prokMSA_id:24541 Pseudomonas sp. SMCC B0333 prokMSA_id:26680 Pseudomonas fluorescens strain Q2-87 prokMSA_id:30745 Pseudomonas sp. LAB-23 prokMSA_id:35287 Pseudomonas kilonensis strain 520-20 prokMSA_id:35650 Pseudomonas syringae prokMSA_id:37569 Pseudomonas sp. cb3 prokMSA_id:37605 Pseudomonas fluorescens strain Biotype F prokMSA_id:38949 Pseudomonas sp. Q65c-80 strain Q65c-80 prokMSA_id:38968 P.chlororaphis strain DSM 50083T prokMSA_id:42258 Pseudomonas syringae pv. mori prokMSA_id:43042 Pseudomonas syringae pv. glycinea prokMSA_id:43071 Pseudomonas sp. isolate EK1 prokMSA_id:43799 Pseudomonas syringae pv. eriobotryae prokMSA_id:45704 Pseudomonas syringae pv. myricae prokMSA_id:50915 Pseudomonas brassicacearum strain 520-1 prokMSA_id:51252 Pseudomonas sp. isolate ON1 prokMSA_id:52123 Pseudomonas syringae pv. tagetis prokMSA_id:52266 Pseudomonas sp. Q37-87 strain Q37-87 prokMSA_id:53538 Pseudomonas chlororaphis prokMSA_id:58730 Pseudomonas sp. 9-1 prokMSA_id:60339 clone Nap14 prokMSA_id:61845 gamma clone CLi21 prokMSA_id:63915 Pseudomonas congelans strain DSM 14939T prokMSA_id:63918 Pseudomonas tremae strain CFBP 6111T prokMSA_id:63919 Pseudomonas cannabina strain CFBP 2341T prokMSA_id:69781 Pseudomonas caricapapayae prokMSA_id:69974 Pseudomonas aureofaciens prokMSA_id:70054 Pseudomonas sp. GB13 prokMSA_id:70756 Pseudomonas chlororaphis isolate ICMP 13610; NRRL B-1576 prokMSA_id:77306 Pseudomonas sp. New10530 prokMSA_id:77313 Pseudomonas sp. gs14 prokMSA_id:77337 Pseudomonas sp. S55-6 prokMSA_id:77356 Pseudomonas sp. 34K4 prokMSA_id:77373 Pseudomonas sp. GS61 prokMSA_id:77380 Pseudomonas sp. S23-11 prokMSA_id:77396 Pseudomonas sp. 28R14a prokMSA_id:77402 Pseudomonas sp. GS49 prokMSA_id:77405 Pseudomonas sp. S57-2 prokMSA_id:77460 Pseudomonas sp. S67-2 prokMSA_id:77463 Pseudomonas sp. 34t20 prokMSA_id:77468 Pseudomonas sp. New10529 prokMSA_id:77477 Pseudomonas sp. gs7 prokMSA_id:77482 Pseudomonas sp. S67-3 prokMSA_id:79193 Pseudomonas sp. Ps 1-2 prokMSA_id:81754 Pseudomonas mandelii prokMSA_id:82755 Pseudomonas syringae pv. pisi prokMSA_id:83026 Pseudomonas sp. BTs10022 prokMSA_id:83047 Pseudomonas sp. BE1dil prokMSA_id:83510 Pseudomonas chlororaphis prokMSA_id:83659 Pseudomonas sp. SE22#2 prokMSA_id:83726 Pseudomonas sp. SE7#1 prokMSA_id:84130 Pseudomonas sp. BE3dil prokMSA_id:84597 Pseudomonas sp. BG2dil prokMSA_id:84747 Pseudomonas sp. WE7#1b prokMSA_id:85041 Pseudomonas sp. '11/20CMC control' prokMSA_id:85772 Pseudomonas sp. WG22#2 prokMSA_id:86377 Pseudomonas sp. R1enr 2.28.3.13.14.1.8476 OTU 1 seq prokMSA_id:24053 gamma clone R58 2.28.3.13.14.1.8635 OTU 1 seq prokMSA_id:22832 Pseudomonas putida 2.28.3.13.14.1.8670 OTU 1 seq prokMSA_id:35948 NWCu007 2.28.3.13.14.1.8679 OTU 1 seq prokMSA_id:79355 clone ZA3412c 2.28.3.13.14.1.8703 OTU 1 seq prokMSA_id:81842 Beggiatoa sp. AA5A 2.28.3.13.14.1.8853 OTU 3 seqs prokMSA_id:8637 Pseudomonas cichorii str. PC 1 LMG 2162 prokMSA_id:8638 Pseudomonas cichorii str. PC 1 ATCC 10857 prokMSA_id:30292 Pseudomonas cichorii isolate ICMP 5707; ATCC 10857 2.28.3.13.14.1.8856 OTU 3 seqs prokMSA_id:31704 marine isolate LQ-2001 prokMSA_id:62941 Leella ganghwensis strain JC2044 AY130994 prokMSA_id:70229 Leella ganghwensis strain JC2045 2.28.3.13.14.1.8883 OTU 1 seq prokMSA_id:37630 gamma MERTZ_2CM_253 2.28.3.13.14.1.9020 OTU 1 seq prokMSA_id:50734 marine ZD0433 2.28.3.13.14.1.9028 OTU 7 seqs prokMSA_id:8642 str. S2 prokMSA_id:36542 Pseudomonas sp. 'FSL D1-045' prokMSA_id:52524 Pseudomonas sp. 'FSL D1-024' prokMSA_id:60331 clone Phe13 prokMSA_id:60343 clone Glu3 prokMSA_id:76514 Pseudomonas sp. BHP7-11 prokMSA_id:79231 Pseudomonas sp. Ps 9-14 2.28.3.13.14.1.9044 OTU 1 seq prokMSA_id:67771 isolate C1_B045 2.28.3.13.14.1.9137 OTU 1 seq prokMSA_id:27856 gamma MERTZ_2CM_218 2.28.3.13.14.1.9240 OTU 10 seqs prokMSA_id:23945 Pseudomonas sp. PGNR1 strain PGNR1 AJ417071 prokMSA_id:29949 Pseudomonas fluorescens strain CHA0 AJ278812 prokMSA_id:31990 Pseudomonas sp. NZ102 AY014820 prokMSA_id:40472 Pseudomonas sp. NZ101 prokMSA_id:44937 Pseudomonas sp. NZ097 prokMSA_id:51887 Pseudomonas sp. PF strain PF AJ417073 prokMSA_id:58732 Pseudomonas sp. 7-1 prokMSA_id:66228 Pseudomonas sp. HS21 prokMSA_id:71021 Pseudomonas fluorescens strain ATCC 17386 prokMSA_id:81594 Pseudomonas fluorescens strain MM-B16 2.28.3.13.14.1.9267 OTU 5 seqs prokMSA_id:31850 Pseudomonas syringae pv. theae prokMSA_id:41675 Pseudomonas syringae prokMSA_id:47854 Pseudomonas syringae pv. actinidiae prokMSA_id:50673 Pseudomonas syringae pv. maculicola prokMSA_id:50962 Pseudomonas syringae pv. morsprunorum 2.28.3.13.14.1.9310 OTU 1 seq prokMSA_id:75209 Pseudomonas sp. AC-167 2.28.3.13.14.1.9329 OTU 1 seq prokMSA_id:36080 gamma MERTZ_2CM_255 2.28.3.13.14.1.9399 OTU 1 seq prokMSA_id:22889 alpha clone BIji17 2.28.3.13.14.1.9500 OTU 1 seq prokMSA_id:30992 Cellvibrio vulgaris NCIMB 8633 2.28.3.13.14.1.9620 OTU 8 seqs prokMSA_id:8643 clone OCS5 prokMSA_id:19508 marine ZD0107 prokMSA_id:33605 gamma KTc1112 prokMSA_id:40069 gamma Arctic97A-18 prokMSA_id:45850 OCS5 AF173975 prokMSA_id:53597 gamma MB12G02 and 23S genes prokMSA_id:54017 EBAC27G05 and 23S genes prokMSA_id:69857 gamma CHAB-III-1 5' 2.28.3.13.14.2 PS.TOLAASII_SUBGROUP 184 seqs 2.28.3.13.14.2.8175 OTU 1 seq prokMSA_id:21505 Pseudomonas cellulosa 2.28.3.13.14.2.8212 OTU 1 seq prokMSA_id:8712 clone ACE-4 2.28.3.13.14.2.8294 OTU 1 seq prokMSA_id:85548 clone 12 2.28.3.13.14.2.8295 OTU 1 seq prokMSA_id:47749 ECS30 2.28.3.13.14.2.8323 OTU 1 seq prokMSA_id:70607 isolate C1_B013 2.28.3.13.14.2.8338 OTU 33 seqs prokMSA_id:8666 Pseudomonas fluorescens IAM 12022 prokMSA_id:8668 str. BD4-3 prokMSA_id:8669 str. NKB1 prokMSA_id:8710 Pseudomonas fluorescens prokMSA_id:8716 str. BD6-5 prokMSA_id:19748 Pseudomonas tolaasii strain NCPPB 1116 prokMSA_id:21571 Pseudomonas tolaasii prokMSA_id:26547 Pseudomonas fluorescens strain ATCC 13525 prokMSA_id:27387 Pseudomonas sp. E102 prokMSA_id:29039 Pseudomonas fluorescens strain ATCC 17556 prokMSA_id:33184 Pseudomonas fluorescens strain Biotype A prokMSA_id:37361 Pseudomonas tolaasii strain NCPPB 2325 prokMSA_id:37579 Pseudomonas fluorescens strain Biotype G prokMSA_id:38915 Pseudomonas sp. NZ124 prokMSA_id:42961 Pseudomonas tolaasii prokMSA_id:46670 Pseudomonas sp. G2 prokMSA_id:48111 Pseudomonas synxantha prokMSA_id:50836 Pseudomonas tolaasii strain NCPPB 741 prokMSA_id:52401 Pseudomonas sp. NZ106 prokMSA_id:59919 gamma clone ccs242 prokMSA_id:60448 Pseudomonas sp. Fa3 prokMSA_id:63913 Pseudomonas trivialis strain DSM 14937T prokMSA_id:63914 Pseudomonas poae strain DSM 14936T prokMSA_id:67535 Pseudomonas costantinii prokMSA_id:71567 Pseudomonas fluorescens isolate ICMP 3512; ATCC 13525; NCIB prokMSA_id:72253 Pseudomonas sp. NZ006 prokMSA_id:73710 Pseudomonas sp. 'FSL R1-195' prokMSA_id:74047 Pseudomonas tolaasii strain NCPPB 2192 prokMSA_id:74265 Pseudomonas sp. NZ031 prokMSA_id:77892 Pseudomonas sp. TUT1023 prokMSA_id:79739 Arctic sea ice ARK9971 prokMSA_id:84439 Pseudomonas reactans prokMSA_id:86068 Pseudomonas sp. SE22#1a 2.28.3.13.14.2.8419 OTU 2 seqs prokMSA_id:30797 Car177 prokMSA_id:74502 Car166 2.28.3.13.14.2.8545 OTU 1 seq prokMSA_id:47070 gamma clone R140 2.28.3.13.14.2.8551 OTU 1 seq prokMSA_id:25219 gamma MERTZ_2CM_40 2.28.3.13.14.2.8561 OTU 1 seq prokMSA_id:45357 Pseudomonas sp. B65 2.28.3.13.14.2.8601 OTU 8 seqs prokMSA_id:8732 Pseudomonas marginalis str. pathovar reference strain LMG 22 prokMSA_id:8733 Pseudomonas marginalis str. pathovar reference strain ATCC 1 prokMSA_id:8734 Pseudomonas KB700A str. KB700A prokMSA_id:28467 Pseudomonas sp. SCD-7 AF448041 prokMSA_id:33387 Pseudomonas sp. SV23 prokMSA_id:35880 Pseudomonas veronii prokMSA_id:49007 Pseudomonas marginalis prokMSA_id:78991 Pseudomonas sp. isolate 4f57 2.28.3.13.14.2.8615 OTU 2 seqs prokMSA_id:27446 GR-Sh1-163 c GR-Sh1-lone AJ296560 prokMSA_id:66956 Pseudomonas sp. NMX 2.28.3.13.14.2.8687 OTU 14 seqs prokMSA_id:8685 Pseudomonas putida NCIMB 9816. D86000 prokMSA_id:8788 Pseudomonas putida ATCC 17522. D85995 prokMSA_id:24808 Pseudomonas putida strain ATCC 17472 prokMSA_id:32635 Pseudomonas corrugata SB4 prokMSA_id:33516 Pseudomonas putida strain Biotype B prokMSA_id:40738 Pseudomonas sp. LAB-36 prokMSA_id:43226 Pseudomonas sp. LAB-08 AB051694 prokMSA_id:51775 Pseudomonas sp. NZ039 AY014808 prokMSA_id:52364 Pseudomonas sp. LAB-26 prokMSA_id:75222 gamma clone JG34-KF-115 prokMSA_id:76308 gamma clone GuBH2-AG-52 AJ519660 prokMSA_id:78081 gamma clone:APe4_13 AB074630 prokMSA_id:85385 Antarctic R-9113 strain R-9113 prokMSA_id:93297 Pseudomonas sp. 'ARDRA PS2' AY364086 2.28.3.13.14.2.8708 OTU 19 seqs prokMSA_id:8665 Pseudomonas fluorescens IAM 12022 prokMSA_id:8714 Pseudomonas rhodesiae str. CFML 92-111 CIP 104664 . AB021410 prokMSA_id:8723 Azospirillum sp. str. AM-53 DSM 1727 prokMSA_id:8726 Azospirillum sp prokMSA_id:8767 Pseudomonas azotoformans IAM 1603 . D84009 prokMSA_id:16371 Pseudomonas sp. AH2 prokMSA_id:43326 Pseudomonas sp. NZ052 prokMSA_id:61816 gamma clone CLs104 prokMSA_id:67413 Pseudomonas salomonii prokMSA_id:70929 Pseudomonas azotoformans complete D84009 prokMSA_id:72372 Pseudomonas fluorescens complete D84013 prokMSA_id:72676 Glacial ice M3C4.1K-B34 AF479375 prokMSA_id:73522 Pseudomonas sp. NZ113 prokMSA_id:73574 Pseudomonas sp. NZ060 prokMSA_id:73740 Pseudomonas sp. NZ111 prokMSA_id:76605 gamma clone JG36-TzT-72 prokMSA_id:83167 Pseudomonas sp. clone IV prokMSA_id:85062 Pseudomonas sp. MWH1 prokMSA_id:90111 Pseudomonas sp. AZ22R11 AY308049 2.28.3.13.14.2.8737 OTU 1 seq prokMSA_id:47332 Oleispira antarcticam strain RB-9 2.28.3.13.14.2.8780 OTU 1 seq prokMSA_id:20181 GR-296.II.89 clone GR-296.II.89 2.28.3.13.14.2.8805 OTU 1 seq prokMSA_id:62458 Gamma HTCC153 2.28.3.13.14.2.8809 OTU 1 seq prokMSA_id:17947 gamma hs2_55 2.28.3.13.14.2.8995 OTU 1 seq prokMSA_id:53457 Pseudomonas sp. ML-120 2.28.3.13.14.2.9175 OTU 9 seqs prokMSA_id:8720 Pseudomonas tolaasii ATCC 33618 prokMSA_id:8721 str. NKB2 prokMSA_id:8769 ACAM 213 prokMSA_id:8770 Pseudomonas IC038 str. IC038 prokMSA_id:33806 Pseudomonas tolaasii strain NZ027 prokMSA_id:35009 Pseudomonas tolaasii strain NZ032 prokMSA_id:52734 Pseudomonas extremorientalis prokMSA_id:70883 Pseudomonas tolaasii D84028 prokMSA_id:79709 Arctic sea ice ARK10061 2.28.3.13.14.2.9221 OTU 71 seqs prokMSA_id:8672 Pseudomonas veronii str. CFML 92-134 CIP 104663 prokMSA_id:8678 Pseudomonas A2 str. A2 prokMSA_id:8679 Pseudomonas KA2 str. KA2 prokMSA_id:8686 Pseudomonas fluorescens DSM 50108 prokMSA_id:8687 Pseudomonas fluorescens NCIMB 9815 prokMSA_id:8688 Pseudomonas orientalis str. CFML 96-170 prokMSA_id:8689 Pseudomonas cedrella str. CFML 96-198 prokMSA_id:8695 Pseudomonas H1 str. H1 prokMSA_id:8698 Pseudomonas 'Shk 1' str. Shk 1 prokMSA_id:8699 Pseudomonas DSM12877 str. PS+ DSM 12877 prokMSA_id:8703 str. BD7-5 prokMSA_id:8704 str. 10-12.H prokMSA_id:8705 str. 4-5.l prokMSA_id:8706 str. 6-13.J prokMSA_id:8707 Pseudomonas rhodesiae str. CFML 92-111 CIP 104664 prokMSA_id:8709 str. 150 prokMSA_id:8711 Pseudomonas IpA-92 str. IpA-92 prokMSA_id:8727 str. BD5-14 prokMSA_id:8729 str. 9.j prokMSA_id:8730 str. JTB247 prokMSA_id:8765 Pseudomonas gessardii CIP 105469 prokMSA_id:8773 str. BD3-15 prokMSA_id:8775 Pseudomonas synxantha IAM 12356 prokMSA_id:8778 Pseudomonas libaniensis CIP 105460 prokMSA_id:16465 Pseudomonas fluorescens strain Biotype C prokMSA_id:16810 Pseudomonas fluorescens prokMSA_id:17216 sheep mite Llangefni 3 prokMSA_id:18648 sheep mite Llangefni 15 prokMSA_id:19517 sheep mite Welshpool 1 prokMSA_id:19794 Rape rhizosphere cse074 prokMSA_id:22349 Pseudomonas grimontii prokMSA_id:23585 Pseudomonas sp. 5N1-1 prokMSA_id:24702 Pseudomonas fluorescens strain Biotype B prokMSA_id:25298 sheep mite Welshpool 49 prokMSA_id:26170 Pseudomonas sp. NZ024 prokMSA_id:26453 Iron-reducing JLN-2 prokMSA_id:27133 Pseudomonas fluorescens bv. G prokMSA_id:29971 Pseudomonas sp. Circle strain Circle prokMSA_id:32498 Pseudomonas sp. 'FSL D1-015' prokMSA_id:32516 Pseudomonas sp. PM-2001 prokMSA_id:32794 Pseudomonas sp. NZ007 prokMSA_id:32814 KF/GS-JG36-13 prokMSA_id:34487 sheep mite Welshpool 13 prokMSA_id:37559 sheep mite Welshpool 46 prokMSA_id:41990 Pseudomonas fluorescens bv. C prokMSA_id:43407 Pseudomonas sp. CM10-2 prokMSA_id:44427 Pseudomonas brennerii complete prokMSA_id:44550 sheep mite Llangefni 6 prokMSA_id:47203 Pseudomonas fluorescens strain ATCC 49642 prokMSA_id:48560 Pseudomonas veronii strain:INA06 prokMSA_id:50036 Agricultural soil clone SC-I-88 prokMSA_id:50165 Pseudomonas fluorescens prokMSA_id:50895 Pseudomonas sp. NZ014 prokMSA_id:51863 Pseudomonas sp. CM10-1 prokMSA_id:59301 Pseudomonas veronii UFZ-B549 prokMSA_id:60445 Pseudomonas sp. Fa8 prokMSA_id:62875 Pseudomonas rhodesiae isolate PF1 prokMSA_id:63912 Pseudomonas fulgida strain DSM 14938T prokMSA_id:66023 Pseudomonas rhodesiae strain KK1 complete prokMSA_id:68456 Symbiont cf. Pseudomonas of Acromyrmex octospinosus prokMSA_id:68653 clone KRA30-19 prokMSA_id:69848 Pseudomonas fluorescens strain ATCC 17574 prokMSA_id:72334 clone MB-A2-106 prokMSA_id:74186 Pseudomonas fluorescens strain ATCC 17397 prokMSA_id:75129 Swine manure 37-8 prokMSA_id:77564 Pseudomonas sp. 10569 prokMSA_id:79157 Pseudomonas antarctica strain CMS 35T prokMSA_id:79186 Pseudomonas proteolytica strain CMS 64T prokMSA_id:79601 Pseudomonas meridiana strain CMS 38T prokMSA_id:81815 Pseudomonas veronii prokMSA_id:84113 Antarctic R-7616 strain R-7616 2.28.3.13.14.2.9231 OTU 1 seq prokMSA_id:81675 clone KD3-89 2.28.3.13.14.2.9243 OTU 1 seq prokMSA_id:8717 Pseudomonas tolaasii LMG 2342 2.28.3.13.14.2.9331 OTU 1 seq prokMSA_id:48531 Pseudomonas sp. CL-2 5'- 2.28.3.13.14.2.9334 OTU 1 seq prokMSA_id:83261 clone 158 2.28.3.13.14.2.9366 OTU 5 seqs prokMSA_id:8673 Pseudomonas MBIC3963 str. MBIC3963 prokMSA_id:29705 Arctic seawater R7366 prokMSA_id:68916 Antarctic seawater R7375 prokMSA_id:73068 Arctic seawater R7078 prokMSA_id:79706 Arctic sea ice associated ARK10142 2.28.3.13.14.2.9462 OTU 1 seq prokMSA_id:47143 gamma ARCT1-18 2.28.3.13.14.2.9467 OTU 1 seq prokMSA_id:17958 gamma Arctic96B-9 2.28.3.13.14.2.9487 OTU 1 seq prokMSA_id:42421 marine pN1-38 2.28.3.13.14.2.9548 OTU 1 seq prokMSA_id:45454 clone LRS6 2.28.3.13.14.7 PS.TAETROLENS_SUBGROUP 6 seqs 2.28.3.13.14.7.8755 OTU 1 seq prokMSA_id:73856 Pseudomonas sp. isolate SK-1-3-1 2.28.3.13.14.7.9172 OTU 5 seqs prokMSA_id:41050 Pseudomonas sp. E-3 prokMSA_id:73611 Pseudomonas sp. 'FSL D1-022' prokMSA_id:81514 Pseudomonas fragi prokMSA_id:82986 Pseudomonas sp. WR7#2 prokMSA_id:89274 Pseudomonas syringae isolate Lz4W AJ576247 2.28.3.13.14.9 PS.AZOTOFORMANS_SUBGROUP 4 seqs 2.28.3.13.14.9.8454 OTU 1 seq prokMSA_id:46424 gamma Arctic96A-14 2.28.3.13.14.9.8922 OTU 1 seq prokMSA_id:43655 clone KS30 2.28.3.13.14.9.9041 OTU 1 seq prokMSA_id:77535 Symbiont LP3 of Lyrodus pedicellatus 2.28.3.13.14.9.9095 OTU 1 seq prokMSA_id:44307 gamma MERTZ_21CM_217 2.28.3.13.15 PS.AGARICI_SUBGROUP 5 seqs 2.28.3.13.15.8200 OTU 1 seq prokMSA_id:21399 gamma kpj394f 2.28.3.13.15.8486 OTU 1 seq prokMSA_id:45928 clone t051 2.28.3.13.15.8896 OTU 1 seq prokMSA_id:86422 gamma clone ST01-SN4A 2.28.3.13.15.9046 OTU 1 seq prokMSA_id:8785 clone EKHO-14 2.28.3.13.15.9606 OTU 1 seq prokMSA_id:8791 clone BURTON-45 2.28.3.16 MRB.HYDROCARBONOCLASTICUS_GROUP 91 seqs 2.28.3.16.8170 OTU 1 seq prokMSA_id:8811 Pseudomonas halophila DSM 3050 2.28.3.16.8327 OTU 1 seq prokMSA_id:80231 Arctic sea ice associated ARK10148 2.28.3.16.8333 OTU 1 seq prokMSA_id:43550 antarctic soil clone bh8.50 2.28.3.16.8413 OTU 1 seq prokMSA_id:66917 clone SHA-37 2.28.3.16.8426 OTU 1 seq prokMSA_id:8800 Marinobacter sp. str. IC022 2.28.3.16.8428 OTU 1 seq prokMSA_id:8806 Marinobacter NK-1 str. NK-1 2.28.3.16.8448 OTU 1 seq prokMSA_id:47061 ECS35 2.28.3.16.8485 OTU 25 seqs prokMSA_id:8809 Marinobacter DS40M8 str. DS40M8 prokMSA_id:16390 Marinobacter sp. Aplume1.1727a complete prokMSA_id:20197 Marine ATAM407_2035 prokMSA_id:21222 Marinobacter aquaeolei prokMSA_id:22385 Marinobacter sp. NCE312 prokMSA_id:26877 Marinobacter sp. 407-13 strain 407-13 prokMSA_id:31320 Marinobacter sp. Asw2.1747a complete prokMSA_id:31627 Marinobacter sp. Splume3.1825c complete prokMSA_id:47395 Marinobacter sp. Splume1.1802c complete prokMSA_id:48119 Marinobacter sp. Splume2.1814c complete prokMSA_id:48682 Marinobacter sp. Asw1.1741a complete AF212208 prokMSA_id:80393 clone ARKICE-88 prokMSA_id:81723 Marinobacter sp. 3030dQ AY196982 prokMSA_id:82024 Arctic sea ice clone ARKXV/1-140 prokMSA_id:82079 Arctic sea ice clone ARKXV/1-157 prokMSA_id:83574 Marine arctic deep-sea FF7b prokMSA_id:83771 Marine arctic deep-sea FC10 prokMSA_id:84236 Marine arctic deep-sea HF12 prokMSA_id:84377 Marine arctic deep-sea FH8 prokMSA_id:84428 Marine arctic deep-sea FC8a prokMSA_id:85559 Marine arctic deep-sea FB9 prokMSA_id:85565 Marinobacter sp. 4301-10/2 isolate 4301-10/2 prokMSA_id:86527 Marine arctic deep-sea HK13 AJ557861 prokMSA_id:95295 Marinobacter sp. EPR 35 AY394884 prokMSA_id:95336 Marinobacter sp. EPR 21 AY394878 2.28.3.16.8484 OTU 1 seq prokMSA_id:60385 Alteromonadaceae LA50 2.28.3.16.8503 OTU 5 seqs prokMSA_id:80459 Arctic sea ice ARK10244 prokMSA_id:80672 clone ARKCH2Br2-12 prokMSA_id:80774 clone ARKICE-18 prokMSA_id:81478 Arctic sea ice clone ARKXV/1-103 prokMSA_id:81583 Marinobacter sp. ANT8277 2.28.3.16.8519 OTU 1 seq prokMSA_id:60391 Alteromonadaceae LA13 2.28.3.16.8578 OTU 13 seqs prokMSA_id:8801 Marinobacter sp. str. IC032. U85864 prokMSA_id:8819 Marinobacter PCOB-2 str. PCOB-2 prokMSA_id:8820 Marinobacter articus. AF148811 prokMSA_id:21327 Marinobacter sp prokMSA_id:38286 GR-Sh1-128 clone GR-Sh1-128 prokMSA_id:45418 Marinobacter sp. 2sq31 strain 2sq31 AJ429499 prokMSA_id:59259 Marinobacter sp. 2Asq64 strain 2Asq64 prokMSA_id:71127 Marinobacter sp. ME108 prokMSA_id:80143 Marinobacter sp. HS7 AB089803 prokMSA_id:80484 clone ARKICE-53 prokMSA_id:80533 clone ARKDMS-57 prokMSA_id:82214 Marinobacter lipolyticus prokMSA_id:91462 R10CA AY345358 2.28.3.16.8584 OTU 2 seqs prokMSA_id:25426 Marinobacter sp. Trimyema-2 isolate 2 prokMSA_id:73167 Marinobacter lutaoensis 2.28.3.16.8594 OTU 1 seq prokMSA_id:66955 Marinobacter sp. SBS 2.28.3.16.8606 OTU 2 seqs prokMSA_id:79903 clone BTM28 prokMSA_id:80244 clone BTM43 2.28.3.16.8714 OTU 7 seqs prokMSA_id:8807 Marinobacter aquaeolei str. VT8 prokMSA_id:8816 Marinobacter hydrocarbonoclasticus str. 179 ATCC 27132 prokMSA_id:8818 Marinobacter CAB str. CAB prokMSA_id:8821 str. HTB148 prokMSA_id:60388 Alteromonadaceae LA34A prokMSA_id:75064 Marinobacter sp. R2 prokMSA_id:80080 Marinobacter sp. HB7 2.28.3.16.8767 OTU 1 seq prokMSA_id:61967 Marinobacter-like sp. V4.MS.24 2.28.3.16.8814 OTU 3 seqs prokMSA_id:8696 str. MBIC3958. AB020600 prokMSA_id:8810 str. MBIC3957. AB021682 prokMSA_id:24515 Hahella chejuensis strain KCTC 2396 2.28.3.16.8835 OTU 1 seq prokMSA_id:80169 clone ARKDMS-76 2.28.3.16.8944 OTU 1 seq prokMSA_id:24422 gamma clone R180 2.28.3.16.8959 OTU 1 seq prokMSA_id:60644 gamma clone AEGEAN_133 2.28.3.16.9073 OTU 1 seq prokMSA_id:8799 Flectobacillus sp. str. S36-Wgv1 2.28.3.16.9089 OTU 2 seqs prokMSA_id:32995 gamma clone MPD-18 prokMSA_id:45195 gamma clone MPD-50 2.28.3.16.9122 OTU 1 seq prokMSA_id:81942 Arctic sea ice clone ARKXV/1-96 2.28.3.16.9239 OTU 5 seqs prokMSA_id:79688 Arctic sea ice ARK10228 prokMSA_id:79693 clone ARKIA-100 prokMSA_id:79868 Arctic sea ice ARK10251 prokMSA_id:79964 Arctic sea ice ARK10296 prokMSA_id:82935 Antarctic R-9035 strain R-9035 2.28.3.16.9254 OTU 1 seq prokMSA_id:37115 Marinobacter sp. Trimyema-1 isolate 1 2.28.3.16.9294 OTU 2 seqs prokMSA_id:82957 Marine arctic deep-sea FE8 prokMSA_id:84025 Marine arctic deep-sea HG11 2.28.3.16.9380 OTU 1 seq prokMSA_id:78569 Marinobacter excelentus strain KMM 3809 2.28.3.16.9484 OTU 1 seq prokMSA_id:20696 Marinobacter sp 2.28.3.16.9582 OTU 1 seq prokMSA_id:27082 Marine NBF32 2.28.3.16.9584 OTU 2 seqs prokMSA_id:20468 Marinobacter sp. MR-1 prokMSA_id:29755 Marinobacter sp. MR-6 2.28.3.16.9636 OTU 1 seq prokMSA_id:8805 Marinobacter ORGANIC-9 2.28.3.16.9635 OTU 1 seq prokMSA_id:8803 Marinobacter sp. str. IC184 2.28.3.16.9633 OTU 1 seq prokMSA_id:8802 Marinobacter sp. str. IC180 2.28.3.17 TCP.ROSEOPERSICINA_GROUP 13 seqs 2.28.3.17.8180 OTU 1 seq prokMSA_id:47714 Gamma F8 2.28.3.17.8483 OTU 3 seqs prokMSA_id:8823 Curacaobacter baltica str. OS 140 prokMSA_id:73653 Rheinheimera baltica strain OSBAC5 prokMSA_id:83055 Marine HP1 2.28.3.17.8502 OTU 1 seq prokMSA_id:8824 str. SELECT-1 2.28.3.17.9370 OTU 3 seqs prokMSA_id:8827 str. HTB021 prokMSA_id:8828 str. HTB019 prokMSA_id:55811 clone MB-A2-102 2.28.3.17.9542 OTU 5 seqs prokMSA_id:8825 str. HTB082 prokMSA_id:21087 clone p-261-o5 prokMSA_id:24038 clone p-502-o2 prokMSA_id:27315 sheep mite Llangefni 75 prokMSA_id:33192 Alishewanella fetalis AF144407 2.28.3.18 COLWELLIA_GROUP 90 seqs 2.28.3.18.8196 OTU 1 seq prokMSA_id:77803 clone 216 2.28.3.18.8211 OTU 1 seq prokMSA_id:8829 Colwellia maris str. ABE-1 JCM 10085 2.28.3.18.8222 OTU 1 seq prokMSA_id:78196 clone 240 2.28.3.18.8255 OTU 1 seq prokMSA_id:81437 Antarctic sea ice clone ANTXI/4_14-151 2.28.3.18.8266 OTU 1 seq prokMSA_id:8850 Colwellia rossensis str. S51-Wgv1 2.28.3.18.8600 OTU 50 seqs prokMSA_id:8836 Colwellia psychroerythrea ATCC 27364 prokMSA_id:8840 Colwellia psychroerythraea ACAM 604 prokMSA_id:8841 Colwellia psychroerythraea str. IC064 prokMSA_id:8843 Colwellia psychroerythrea ATCC 27364 prokMSA_id:36120 Colwellia psychroerythraea prokMSA_id:50180 Colwellia sp. 34H prokMSA_id:61116 Colwellia psychroerythraea prokMSA_id:66627 gamma clone 1-46 AY094497 prokMSA_id:79094 Gamma UMB8H AF505737 prokMSA_id:79163 Gamma UMB10B AF505738 prokMSA_id:79209 Gamma UMB7D AF505733 prokMSA_id:79265 Gamma UMB3E prokMSA_id:79426 Gamma UMB6B prokMSA_id:79516 Gamma UMB7C AF505732 prokMSA_id:79584 Gamma UMB7A prokMSA_id:80356 Arctic sea ice ARK10102 prokMSA_id:80357 clone ARKICE-3 prokMSA_id:80364 clone ARKICE-28 prokMSA_id:80708 clone ARKIA-71 prokMSA_id:80830 clone ARKIA-94 prokMSA_id:80889 clone ARKDMS-61 AF468254 prokMSA_id:81146 Psychrobacter sp. ARK10133 prokMSA_id:81177 Colwellia rossensis strain ANT8228 prokMSA_id:81289 Colwellia sp. ANT9196 prokMSA_id:81569 Colwellia sp. ANT9187 prokMSA_id:81575 Colwellia rossensis strain ANT9246 prokMSA_id:81600 Antarctic sea ice clone ANTXI/4_14-31 prokMSA_id:81615 Antarctic sea ice clone ANTXI/4_14-79 prokMSA_id:81632 Colwellia sp. ANT9381 prokMSA_id:81641 Colwellia rossensis strain ANT9250 prokMSA_id:81643 Colwellia sp. ANT9407 prokMSA_id:81695 Colwellia rossensis strain ANT9228 prokMSA_id:81749 Colwellia rossensis strain ANT9203 prokMSA_id:81807 Colwellia rossensis strain ANT9279 prokMSA_id:81818 Colwellia sp. ANT8203 prokMSA_id:82145 Roseobacter sp. ANT8230 AY167251 prokMSA_id:82218 Colwellia sp. ANT9176 AY167291 prokMSA_id:82290 Colwellia rossensis strain ANT9247 prokMSA_id:82300 Colwellia rossensis strain ANT8283 prokMSA_id:82309 Colwellia rossensis strain ANT9271 prokMSA_id:82359 Colwellia sp. ANT9207 prokMSA_id:82428 Colwellia sp. ANT9037 AY167272 prokMSA_id:82439 Colwellia sp. ANT8258 prokMSA_id:82465 Colwellia sp. ANT8279 prokMSA_id:94879 clone A84 complete AY373421 prokMSA_id:95362 clone B98 AY375079 prokMSA_id:96457 clone D12 AY375136 prokMSA_id:97399 clone B136 AY375086 prokMSA_id:97603 Colwellia piezophila strain:Y223G AB094412 prokMSA_id:97654 clone B344 AY375071 2.28.3.18.8753 OTU 4 seqs prokMSA_id:35914 Halophilic TAG C7 prokMSA_id:59885 Idiomarina baltica strain OS145 prokMSA_id:60389 Idiomarina sp. LA26 prokMSA_id:73468 Slope strain DIII1c 2.28.3.18.8808 OTU 1 seq prokMSA_id:8834 str. 62.f 2.28.3.18.8819 OTU 8 seqs prokMSA_id:8832 unnamed organism prokMSA_id:9054 str. BD1-9 prokMSA_id:9055 str. BD4-11 prokMSA_id:9056 str. BD6-1 prokMSA_id:67499 Idiomarina loihiensis strain 53 prokMSA_id:70055 Gamma KT11ds7 prokMSA_id:76315 Gamma HY-54 isolate HY-54 AJ294341 prokMSA_id:84841 Marine arctic deep-sea FI8 2.28.3.18.8825 OTU 1 seq prokMSA_id:8838 Colwellia -like sp. IC169 str. IC169 2.28.3.18.8900 OTU 1 seq prokMSA_id:8864 Pele's Vents clone PVB_54 2.28.3.18.8923 OTU 2 seqs prokMSA_id:26868 Thalassomonas viridans strain XOM5 CECT 5082 prokMSA_id:36824 Thalassomonas viridans strain XOM25T CECT 5083T 2.28.3.18.8928 OTU 1 seq prokMSA_id:44150 sp. Crater Lake isolate 11C1 2.28.3.18.9069 OTU 1 seq prokMSA_id:8833 clone 1_20 2.28.3.18.9102 OTU 1 seq prokMSA_id:45973 Marine KM231 2.28.3.18.9132 OTU 1 seq prokMSA_id:8854 marine snow associated clone agg53 2.28.3.18.9203 OTU 1 seq prokMSA_id:81968 Gamma JC2041 2.28.3.18.9209 OTU 1 seq prokMSA_id:24004 Colwellia sp. clone MERTZ_0CM_312 2.28.3.18.9402 OTU 2 seqs prokMSA_id:43155 Alteromonas sp. KT1101 AF235128 prokMSA_id:76778 Alteromonadaceae SN-1009 2.28.3.18.9407 OTU 1 seq prokMSA_id:46300 Colwellia sp. clone MERTZ_0CM_122 2.28.3.18.9445 OTU 2 seqs prokMSA_id:46123 Thalassomonas sp. MERTZ_0CM_55 AF424133 prokMSA_id:79736 Colwellia sp. HLC 2.28.3.18.9472 OTU 1 seq prokMSA_id:50517 Colwellia sp. MERTZ_2CM_50 2.28.3.18.9486 OTU 1 seq prokMSA_id:65942 Marine GK-2001 2.28.3.18.9491 OTU 1 seq prokMSA_id:79530 Gamma UMB6D 2.28.3.18.9507 OTU 1 seq prokMSA_id:80254 clone ARKCH2Br2-29 2.28.3.18.9528 OTU 1 seq prokMSA_id:81127 Antarctic sea ice clone ANTXI/13-90 2.28.3.18.9550 OTU 1 seq prokMSA_id:79936 clone ARKDMS-64 2.28.3.18.9647 OTU 1 seq prokMSA_id:37948 sp. Lake Bogoria isolate 10B1 2.28.3.19 ALTM.MACLEODII_GROUP 111 seqs 2.28.3.19.8167 OTU 1 seq prokMSA_id:31197 Marine ATAM173a_5 2.28.3.19.8174 OTU 1 seq prokMSA_id:8878 str. SUR ATT 2.28.3.19.8188 OTU 1 seq prokMSA_id:71399 Alteromonas macleodii 2.28.3.19.8318 OTU 1 seq prokMSA_id:84007 Gamma JC2042 2.28.3.19.8363 OTU 4 seqs prokMSA_id:80765 clone ARKICE-110 prokMSA_id:81094 Antarctic sea ice clone ANTXI/4_14-132 prokMSA_id:81840 Arctic sea ice clone ARKXV/1-106 prokMSA_id:82034 Arctic sea ice clone ARKXV/1-127 2.28.3.19.8374 OTU 3 seqs prokMSA_id:56430 Marine gamma MKT112 prokMSA_id:60314 Marine gamma MKT106 AB076561 prokMSA_id:60316 Marine gamma MKT89 AB076560 2.28.3.19.8410 OTU 1 seq prokMSA_id:73940 gamma CHAB-XII-8 5' 2.28.3.19.8511 OTU 2 seqs prokMSA_id:8890 marine prokMSA_id:45496 Alteromonas sp. D 2.28.3.19.8533 OTU 1 seq prokMSA_id:42798 gamma 400m-ATT-24 complete 2.28.3.19.8659 OTU 1 seq prokMSA_id:19556 Facultatively oligotrophic PFO-2 2.28.3.19.8695 OTU 1 seq prokMSA_id:80428 clone ARKIA-34 2.28.3.19.8762 OTU 1 seq prokMSA_id:74015 gamma CHAB-V-29 5' 2.28.3.19.8863 OTU 25 seqs prokMSA_id:8891 Alteromonas macleodii DSM 6062 prokMSA_id:8894 Alteromonas macleodii prokMSA_id:8899 str. HTC 34 prokMSA_id:8900 Alteromonas sp. str. KE10 prokMSA_id:8901 str. HTC036 prokMSA_id:8903 str. HTC032 prokMSA_id:23327 Alteromonas sp. AS-31 prokMSA_id:26409 gamma Arctic95A-15 prokMSA_id:33294 clone 318 prokMSA_id:35156 Alteromonas sp. AS-30 prokMSA_id:44702 Alteromonas sp. 4BT prokMSA_id:45350 gamma CHAB-VI-3 5' prokMSA_id:46469 Alteromonas sp. 407-2 strain 407-2 prokMSA_id:55521 Alteromonas macleodii subsp. fijiensi strain medioatlantica prokMSA_id:55687 Alteromonadaceae clone LAS-B5N prokMSA_id:60377 Alteromonadaceae PH5 prokMSA_id:60990 Alteromonas marina strain SW-49 prokMSA_id:60991 Alteromonas marina strain SW-47 prokMSA_id:62501 Alteromonadaceae clone LAS-B15N prokMSA_id:63591 Alteromonas sp. SHY1-1 prokMSA_id:71090 Alteromonas sp. ANSW2-2 prokMSA_id:71568 Alteromonas macleodii subsp. abyssi strain HYD657 prokMSA_id:71626 Alteromonas alvinellae prokMSA_id:73913 Marine ATAM407_18 prokMSA_id:83231 Gamma JC2043 2.28.3.19.8908 OTU 1 seq prokMSA_id:8868 clone HstpL30 2.28.3.19.8970 OTU 15 seqs prokMSA_id:47176 Polar sea R9879 prokMSA_id:79900 clone ARKIA-115 prokMSA_id:80204 clone ARKDMS-52 prokMSA_id:80755 Arctic sea ice ARK10047 prokMSA_id:80881 Arctic sea ice ARK10218 AF468399 prokMSA_id:81035 Glaciecola sp. ANT9230 prokMSA_id:81075 Glaciecola sp. ANT9183b prokMSA_id:81097 Glaciecola sp. ANT9218 prokMSA_id:81148 Antarctic sea ice clone ANTXI/4_14-97 prokMSA_id:81511 Glaciecola sp. ANT9094 prokMSA_id:81573 Glaciecola sp. ANT9148 AY167285 prokMSA_id:81756 Antarctic sea ice clone ANTXI/4_14-32 prokMSA_id:81831 Glaciecola sp. ANT9029 AY167271 prokMSA_id:82072 Glaciecola sp. ANT9177 AY167292 prokMSA_id:82435 Glaciecola sp. ANT8284 AY167270 2.28.3.19.8978 OTU 6 seqs prokMSA_id:79998 Arctic sea ice ARK10128 prokMSA_id:80404 Arctic sea ice ARK10130 prokMSA_id:80564 Arctic sea ice ARK10108 prokMSA_id:81949 Glaciecola punicea strain ANT9189 prokMSA_id:82266 Glaciecola sp. ANT9258 AY167309 prokMSA_id:82306 Glaciecola sp. ANT9159 2.28.3.19.8992 OTU 1 seq prokMSA_id:8882 str. 400m ATT 2.28.3.19.9003 OTU 9 seqs prokMSA_id:81210 Glaciecola sp. ANT9142 prokMSA_id:81369 Glaciecola sp. ANT9061 prokMSA_id:81376 Glaciecola sp. ANT9166 prokMSA_id:81720 Glaciecola sp. ANT9133 prokMSA_id:81743 Glaciecola sp. ANT9175 prokMSA_id:81777 Glaciecola sp. ANT9081 prokMSA_id:81795 Glaciecola sp. ANT9154 prokMSA_id:82048 Glaciecola sp. ANT9085 prokMSA_id:82405 Glaciecola sp. ANT9055 2.28.3.19.9023 OTU 1 seq prokMSA_id:8893 Alteromonas macleodii 2.28.3.19.9024 OTU 1 seq prokMSA_id:8895 Alteromonas macleodii str. CH-460 2.28.3.19.9177 OTU 6 seqs prokMSA_id:39858 Arctic seawater R7215 AJ293820 prokMSA_id:65357 Glaciecola sp. KMM 241 strain KMM 241 AJ488501 prokMSA_id:74198 Glaciecola sp. HA02 prokMSA_id:79499 Gamma UMB8E prokMSA_id:88454 Glaciecola polaris strain strain LMG 21854 AJ548478 prokMSA_id:89023 Glaciecola gelidimarina strain LMG 21855 AJ548479 2.28.3.19.9194 OTU 1 seq prokMSA_id:8873 Glaciecola pallidula str. IC079 ACAM 615 2.28.3.19.9230 OTU 1 seq prokMSA_id:82404 Antarctic sea ice clone ANTXI/4_14-62 2.28.3.19.9236 OTU 1 seq prokMSA_id:8880 str. SUR ATT 2.28.3.19.9288 OTU 15 seqs prokMSA_id:8874 str. 400m ATT prokMSA_id:8877 str. SUR ATT prokMSA_id:8879 str. DCM ATT prokMSA_id:8883 str. DCM ATT prokMSA_id:8884 str. 400m ATT prokMSA_id:8885 str. 400m ATT prokMSA_id:8892 Alteromonas macleodii prokMSA_id:8896 Alteromonas macleodii str. CH-516 prokMSA_id:22311 Alteromonas sp. TO01 prokMSA_id:26192 Alteromonas sp. 2c3 strain 2c3 prokMSA_id:62005 Alteromonas sp. V4.BE.32 prokMSA_id:67709 Alteromonas sp. KC98716-13 prokMSA_id:72274 Alteromonas sp. V4.ME.16 prokMSA_id:73259 Polar sea R9875 prokMSA_id:73896 Alteromonas sp. 253-19 strain 253-19 strain 253-19 2.28.3.19.9292 OTU 5 seqs prokMSA_id:8866 Alteromonas macleodii. L10938 prokMSA_id:8875 str. DCM ATT prokMSA_id:8876 str. SUR ATT prokMSA_id:8881 str. 400m ATT prokMSA_id:72384 Pseudoalteromonas sp. KT0812A AF239705 2.28.3.19.9501 OTU 1 seq prokMSA_id:81621 Biphenyl-degrading BP-PH 2.28.3.19.9562 OTU 1 seq prokMSA_id:62499 Alteromonadaceae clone PH-B55N 2.28.3.19.9575 OTU 1 seq prokMSA_id:42742 gamma clone 33-FL26B99 2.28.3.19.9625 OTU 1 seq prokMSA_id:35256 marine complete strain:GY9501 2.28.3.19.9649 OTU 1 seq prokMSA_id:8898 str. 214.6 2.28.3.20 PSEUDOALTEROMONAS_GROUP 353 seqs 2.28.3.20.1 PAL.HALOPLANKTIS_SUBGROUP 136 seqs 2.28.3.20.1.8172 OTU 2 seqs prokMSA_id:73410 Pseudoalteromonas sp. Bdeep-1 prokMSA_id:73474 Pseudoalteromonas sp. Ideep-1 2.28.3.20.1.8260 OTU 1 seq prokMSA_id:45605 Pseudoalteromonas kps67f 2.28.3.20.1.8336 OTU 5 seqs prokMSA_id:37299 Marine Tw-7 prokMSA_id:39843 gamma Arctic96AD-16 prokMSA_id:40549 Alteromonas sp. MS23 prokMSA_id:43301 Pseudoalteromonas sp. AS-28 prokMSA_id:51268 Pseudoalteromonas sp. AS-27 2.28.3.20.1.8368 OTU 4 seqs prokMSA_id:8921 Pseudoalteromonas RE10F/2 str. RE10F/2 prokMSA_id:42828 Pseudoalteromonas porphyrae prokMSA_id:59526 Pseudoalteromonas sp. KMM 3635 strain KMM 3635 prokMSA_id:79398 Pseudoalteromonas sp. MMM18 2.28.3.20.1.8580 OTU 28 seqs prokMSA_id:8905 Pseudoalteromonas nigrifaciens NCIMB 8614 prokMSA_id:8907 Pseudoalteromonas gracilis str. B9 prokMSA_id:8914 Pseudoalteromonas ANG.ro2 str. ANG.strain ro2 prokMSA_id:8926 Pseudoalteromonas sp. str. IC006 prokMSA_id:8927 Pseudoalteromonas sp. str. MB6-03 prokMSA_id:8928 Pseudoalteromonas sp. str. MB8-02 prokMSA_id:8931 Pseudoalteromonas sp. str. SW08 prokMSA_id:8944 Pseudoalteromonas antarctica str. NF3 CECT 4664 prokMSA_id:8945 Alteromonas fuliginea KMM 216 prokMSA_id:21879 Pseudoalteromonas sp. KMM 520 prokMSA_id:33697 Pseudoalteromonas sp. 22b prokMSA_id:45332 Pseudoalteromonas sp. JLN-A013 strain prokMSA_id:54098 Psychrophilic marine PS39 complete and -23S intergenic space prokMSA_id:54633 Psychrophilic marine PS10 complete and -23S intergenic space prokMSA_id:54983 Psychrophilic sea water PS16 complete and -23S intergenic sp prokMSA_id:60988 Pseudoalteromonas citrea strain CIP 105339 prokMSA_id:61120 Pseudoalteromonas sp. MGP-34 prokMSA_id:67502 Pseudoalteromonas sp. 39 strain 39 prokMSA_id:72158 Polar sea R7076 prokMSA_id:73595 Pseudoalteromonas sp. V4.BE.18 prokMSA_id:77391 Psychrophilic marine WP-1 prokMSA_id:83467 Pseudoalteromonas sp. R46 prokMSA_id:84561 Pseudoalteromonas sp. R30 prokMSA_id:84933 Pseudoalteromonas sp. E48 prokMSA_id:85564 Pseudoalteromonas sp. E29 prokMSA_id:85635 Pseudoalteromonas antarctica strain PS18 prokMSA_id:85898 Pseudoalteromonas sp. E30 prokMSA_id:86092 Pseudoalteromonas sp. E47 2.28.3.20.1.8591 OTU 1 seq prokMSA_id:17452 Pseudoalteromonas sp. UST991130-041 2.28.3.20.1.8602 OTU 1 seq prokMSA_id:47224 Pseudoalteromonas kps58rc 2.28.3.20.1.8617 OTU 1 seq prokMSA_id:8920 str. KI89A 2.28.3.20.1.8713 OTU 3 seqs prokMSA_id:26362 Alteromonas sp. KT0232 prokMSA_id:37967 Marine Tw-2 prokMSA_id:73001 Pseudoalteromonas 2.28.3.20.1.8768 OTU 1 seq prokMSA_id:51156 Pseudoalteromonas kps64f 2.28.3.20.1.8932 OTU 1 seq prokMSA_id:8946 Pseudoalteromonas antarctica str. N-1 2.28.3.20.1.8975 OTU 7 seqs prokMSA_id:17084 Pseudoalteromonas SIC.8123 AF277504 prokMSA_id:37660 Pseudoalteromonas sp. 2b prokMSA_id:37970 Alteromonas sp. strain NIBH P3M26 complete prokMSA_id:40554 C16S prokMSA_id:43190 x3 prokMSA_id:83123 Pseudoalteromonas sp. R44 prokMSA_id:97790 Pseudoalteromonas sp. 2-3-6-2 AY383040 2.28.3.20.1.9019 OTU 1 seq prokMSA_id:33026 Marine adapted facultatively oligotrophic PAF-2 2.28.3.20.1.9058 OTU 3 seqs prokMSA_id:8908 Pseudoalteromonas carrageenovora IAM 12662 prokMSA_id:8916 str. 12-13 prokMSA_id:85933 Pseudoalteromonas sp. RE2-12b 2.28.3.20.1.9111 OTU 1 seq prokMSA_id:84384 Pseudoalteromonas sp. E36 2.28.3.20.1.9143 OTU 43 seqs prokMSA_id:8909 Pseudoalteromonas sp. str. FU0605 prokMSA_id:8910 str. H120 prokMSA_id:8912 Pseudoalteromonas atlantica IAM 12927 prokMSA_id:8918 Pseudoalteromonas haloplanktis subsp. tetraodonis str. GFC I prokMSA_id:8919 Pseudoalteromonas sp. str. AR0307 prokMSA_id:8925 Alteromonas elyakovii str. 40MC KMM 162 prokMSA_id:8929 Pseudoalteromonas sp. str. IC013 prokMSA_id:8930 Pseudoalteromonas sp. str. MB6-05 prokMSA_id:8932 Pseudoalteromonas elyakovii str. O22 prokMSA_id:8934 Pseudoalteromonas ER72M2 prokMSA_id:8947 Alteromonas distincta KMM 638 prokMSA_id:17585 Pseudoalteromonas elyakovii prokMSA_id:18568 Pseudoalteromonas sp. P-1P41 prokMSA_id:18661 Pseudoalteromonas atlantica prokMSA_id:20215 Pseudoalteromonas sp. AS-41 prokMSA_id:22902 Alteromonas distincta prokMSA_id:23058 Pseudoalteromonas sp. EH-2-1 prokMSA_id:30396 Marine Tw-5 prokMSA_id:32584 Pseudoalteromonas sp. SUR560 prokMSA_id:33435 Marine BB2AT2 prokMSA_id:35558 Pseudoalteromonas sp. TE1-1 strain TE1-1 prokMSA_id:37455 Pseudoalteromonas issachenkonii strain KMM 3558 prokMSA_id:39984 Pseudoalteromonas haloplanktis subsp. tetraodonis strain KMM prokMSA_id:46309 Pseudoalteromonas sp. KMM 3548 prokMSA_id:46753 Pseudoalteromonas agarovorans strain KMM 255 prokMSA_id:50106 Pseudoalteromonas sp. KM-Y92-001 prokMSA_id:51317 Pseudoalteromonas atlantica prokMSA_id:52453 Pseudoalteromonas sp. TE2-2 strain TE2-2 prokMSA_id:61131 Pseudoalteromonas sp. MGP-2 prokMSA_id:70360 Abyssal strain AIII3* prokMSA_id:71431 Pseudoalteromonas sp. V4.BE.07 prokMSA_id:71998 Polar sea R7852 prokMSA_id:77092 Pseudoalteromonas sp. AC-144 prokMSA_id:80048 Pseudoalteromonas atlantica prokMSA_id:81950 Pseudoalteromonas sp. ANT9388 prokMSA_id:82882 Pseudoalteromonas sp. E33 prokMSA_id:83200 Pseudoalteromonas sp. CAM25 prokMSA_id:83556 Marine arctic deep-sea HA10b prokMSA_id:83930 Marine arctic deep-sea FK8b prokMSA_id:84567 Pseudoalteromonas sp. FRA000006 prokMSA_id:84881 Alteromonadaceae T8 prokMSA_id:86352 Pseudoalteromonas sp. CAM36 prokMSA_id:86404 Marine arctic deep-sea HA10a 2.28.3.20.1.9205 OTU 1 seq prokMSA_id:19398 gamma Arctic96B-17 2.28.3.20.1.9218 OTU 14 seqs prokMSA_id:8915 str. H7 prokMSA_id:8935 Pseudoalteromonas haloplanktis subsp. haloplanktis ATCC 1439 prokMSA_id:16478 Pseudoalteromonas sp. LT13 complete prokMSA_id:17633 Pseudoalteromonas sp. PF30-23 prokMSA_id:20578 Pseudoalteromonas sp. JLN-U1 strain prokMSA_id:23413 Pseudoalteromonas sp. DC1 complete prokMSA_id:25530 Pseudoalteromonas sp prokMSA_id:27905 Marine gamma BB2AT2 prokMSA_id:41181 Pseudoalteromonas sp. SE1-2red strain SE1-2red prokMSA_id:42494 Pseudoalteromonas sp. SE1-2ox strain SE1-2ox prokMSA_id:71344 Marine ATAM173a_36 prokMSA_id:75690 Pseudoalteromonas sp. AC-205 prokMSA_id:82342 Pseudoalteromonas sp. ANT9377 prokMSA_id:86246 Pseudoalteromonas sp. R14 2.28.3.20.1.9248 OTU 1 seq prokMSA_id:38050 Pseudoalteromonas sp. MERTZ_2CM_95 2.28.3.20.1.9298 OTU 2 seqs prokMSA_id:69611 gamma isolate DGGE band C30 AF466889 prokMSA_id:84028 Pseudoalteromonas sp. UST020129-026 2.28.3.20.1.9324 OTU 10 seqs prokMSA_id:8906 Pseudoalteromonas sp. str. SW29 prokMSA_id:8939 Moritella marina str. MP-1 ATCC 15381 . X74709 prokMSA_id:8963 Pseudoalteromonas S9 str. S9 prokMSA_id:8966 Pseudoalteromonas piscicida str. C201 CERBOM. X82141 prokMSA_id:31455 Pseudoalteromonas ruthenica strain KMM290 prokMSA_id:36812 Pseudoalteromonas sp. Edeep-1 prokMSA_id:40223 Pseudoalteromonas ruthenica strain KMM300 prokMSA_id:43347 Vestimentiferan symbiont TW-4 prokMSA_id:43482 Pseudoalteromonas sp. AS-29 AJ391190 prokMSA_id:79319 Gamma UMB11F 2.28.3.20.1.9364 OTU 2 seqs prokMSA_id:8913 Pseudoalteromonas sp. str. MB8-11 prokMSA_id:79339 Gamma UMB20C 2.28.3.20.1.9386 OTU 1 seq prokMSA_id:52182 Alteromonas sp. strain NIBH P3M26 complete 2.28.3.20.1.9627 OTU 1 seq prokMSA_id:23171 Pseudoalteromonas sp 2.28.3.20.1.9640 OTU 1 seq prokMSA_id:43095 Marine Tw-10 2.28.3.20.2 PAL.AURANTIA_SUBGROUP 47 seqs 2.28.3.20.2.8572 OTU 1 seq prokMSA_id:46627 Pseudoalteromonas sp. A25 2.28.3.20.2.8643 OTU 21 seqs prokMSA_id:8948 Pele's Vents clone PVB_18 prokMSA_id:8949 Pseudoalteromonas RE10F/5 str. RE10F/5 prokMSA_id:8950 Pseudoalteromonas S511-1 str. S511-1 prokMSA_id:22024 Marine gamma SWAT5 AF366050 prokMSA_id:29044 Pseudoalteromonas sp. A28 prokMSA_id:30320 clone Car70fc AF224867 prokMSA_id:34196 Pseudoalteromonas sp. Bsur-1 prokMSA_id:36441 Marine Tw-4 prokMSA_id:37218 Pseudoalteromonas espejiana strain kpa58 AF195465 prokMSA_id:55382 clone BB2_15 prokMSA_id:60461 Alteromonas sp. O-TC11A AY007201 prokMSA_id:64941 gamma CS4K-109 AY095801 prokMSA_id:64943 gamma CS4K-106 AY095799 prokMSA_id:64951 gamma CS4K-1 AY095794 prokMSA_id:69339 Pseudoalteromonas sp. 33-3 AF513404 prokMSA_id:74244 Marine Tw-8 AY028203 prokMSA_id:76654 Pseudoalteromonas sp. KJ 2-4 prokMSA_id:80967 gamma clone WCPAP5 AY220709 prokMSA_id:89387 Bacillus sp. LEBHAM-01 strain LEBHAM-01 AJ575803 prokMSA_id:93544 Pseudoalteromonas sp. es32 isolate es32 AJ551132 prokMSA_id:97834 Pseudoalteromonas sp. EPR 1 AY394862 2.28.3.20.2.9145 OTU 2 seqs prokMSA_id:8952 Pseudoalteromonas aurantia ATCC 33046 prokMSA_id:8957 Pseudoalteromonas citrea NCIMB 1889 2.28.3.20.2.9149 OTU 11 seqs prokMSA_id:8967 Pseudoalteromonas piscicida KMM 636 prokMSA_id:8968 Pseudoalteromonas peptidysin str. F12-50-A1 prokMSA_id:8969 Pseudoalteromonas piscicida str. Cura-d prokMSA_id:8970 Pseudoalteromonas Y str. Y prokMSA_id:8971 Pseudoalteromonas piscicida ATCC 15057 prokMSA_id:8972 Pseudoalteromonas rubra ATCC 29570 prokMSA_id:23900 Pseudoalteromonas piscicida clone NCIMB645 prokMSA_id:26328 Pseudoalteromonas flavipulchra prokMSA_id:39091 Pseudoalteromonas piscicida prokMSA_id:71138 Pseudoalteromonas sp. AS-43 prokMSA_id:84026 Pseudoalteromonas sp. RE2-5b 2.28.3.20.2.9148 OTU 7 seqs prokMSA_id:8954 Pseudoalteromonas UL14 str. UL14 prokMSA_id:8955 Pseudoalteromonas UL15 str. UL15 prokMSA_id:8956 Pseudoalteromonas UL1 str. UL1 prokMSA_id:8964 Pseudoalteromonas UL12 str. UL12 prokMSA_id:8965 Pseudoalteromonas UL13 str. UL13 prokMSA_id:44193 Pseudoalteromonas SIC.999 AF277522 prokMSA_id:85529 Pseudoalteromonas sp. R6 AF539776 2.28.3.20.2.9339 OTU 1 seq prokMSA_id:71107 Pseudoalteromonas sp. 05 2.28.3.20.2.9369 OTU 1 seq prokMSA_id:8961 Pseudoalteromonas luteoviolacea NCIMB 1893 2.28.3.20.2.9511 OTU 1 seq prokMSA_id:21860 SBR2113 2.28.3.20.2.9576 OTU 1 seq prokMSA_id:19424 Pseudoalteromonas sp. ACEM-4 2.28.3.20.2.9591 OTU 1 seq prokMSA_id:8962 clone HstpL94 2.28.3.20.3 PAL.BACTERIOLYTICA 2 seqs 2.28.3.20.3.8254 OTU 1 seq prokMSA_id:50424 Marine B-10-31 2.28.3.20.3.9414 OTU 1 seq prokMSA_id:8974 Pseudoalteromonas str. E8R IAM 14595 2.28.3.20.4 MRT.MARINA_SUBGROUP 77 seqs 2.28.3.20.4.8201 OTU 1 seq prokMSA_id:83672 Shewanella surugaensis strain:c959 2.28.3.20.4.8520 OTU 1 seq prokMSA_id:20204 Moritella sp. PS10-13 2.28.3.20.4.8581 OTU 38 seqs prokMSA_id:8998 Vibrio sp. str. DB172F prokMSA_id:9007 Vibrio sp. str. DB6906 prokMSA_id:9008 Shewanella violacea str. DSS12 prokMSA_id:9012 Shewanella benthica str. DB21MT-2 prokMSA_id:9013 Shewanella sp. str. 7-10.B prokMSA_id:9021 Vibrio sp. str. DB172R prokMSA_id:9022 Shewanella benthica str. PT99 prokMSA_id:9023 ATCC 33888 prokMSA_id:9025 Shewanella gelidimarina str. ICP6 ACAM 456 prokMSA_id:9026 Shewanella ANG.Sq2 str. ANG.strain Sq2 prokMSA_id:9030 Shewanella SQ10 prokMSA_id:9031 Shewanella SQ26 prokMSA_id:18498 Shewanella fidelia strain KMM3582T prokMSA_id:40030 Shewanella sp. GIT-33 prokMSA_id:44629 Shewanella sp. SG133 prokMSA_id:46491 Shewanella sp. clone D1Mn prokMSA_id:47896 Shewanella fidelia strain KMM3589 prokMSA_id:55880 Shewanella sp. SM2-1 AB081762 prokMSA_id:56028 Shewanella sp. IK-1 AB081757 prokMSA_id:60926 Shewanella sp. HRKC24 AB081761 prokMSA_id:60928 Shewanella sp. HRKA1 AB081760 prokMSA_id:60929 Shewanella sp. 2T11 AB081759 prokMSA_id:60933 Shewanella sp. HZ17 AB081758 prokMSA_id:61112 Shewanella gelidimarina prokMSA_id:69583 Shewanella fidelis prokMSA_id:70185 Shewanella sp. strain DB172R prokMSA_id:71566 Shewanella sp. strain:DB5501 prokMSA_id:71630 Shewanella sp. strain DB172F D63488 prokMSA_id:71831 Shewanella violacea prokMSA_id:72541 Shewanella sp. strain:DB6101 prokMSA_id:72743 Shewanella sp. strain:DB6906 D21223 prokMSA_id:83294 Shewanella kaireiae strain:c931 prokMSA_id:88004 Shewanella japonica isolate KMM 3582 AF500079 prokMSA_id:88382 Shewanella sp. clone MBAE19 AJ567580 prokMSA_id:89202 Shewanella sp. clone MBAE71 AJ567612 prokMSA_id:89280 Shewanella sp. clone MBAE53 AJ567602 prokMSA_id:89499 Shewanella sp. clone MBAE39 AJ567593 prokMSA_id:90286 Shewanella sp. clone MBAE52 AJ567601 2.28.3.20.4.8641 OTU 7 seqs prokMSA_id:8975 Moritella japonica str. DSK1 prokMSA_id:8989 Moritella DB21MT-5 str. DB21MT-5 prokMSA_id:8992 Moritella sp. str. 9-3.G. AB013840 prokMSA_id:8994 Shewanella sp. str. 7-1.E prokMSA_id:24239 Moritella sp. strain 2693 prokMSA_id:70982 Moritella sp. MGP-6 prokMSA_id:94578 Moritella sp. 2D2 AB120660 2.28.3.20.4.8743 OTU 1 seq prokMSA_id:23606 Gamma MTW-13 2.28.3.20.4.8904 OTU 1 seq prokMSA_id:32285 Gamma PS12-4 2.28.3.20.4.8921 OTU 1 seq prokMSA_id:9017 Shewanella sp. str. 3-8.C 2.28.3.20.4.8956 OTU 1 seq prokMSA_id:9014 barophile WHB 46 clone 2 2.28.3.20.4.8958 OTU 1 seq prokMSA_id:9016 Vibrio sp. str. DB6101 2.28.3.20.4.9009 OTU 1 seq prokMSA_id:9027 Shewanella ANG.209 str. ANG.strain 209 2.28.3.20.4.9011 OTU 1 seq prokMSA_id:9029 Shewanella ANG.231 str. ANG.strain 231 2.28.3.20.4.9039 OTU 1 seq prokMSA_id:9034 str. 3.b 2.28.3.20.4.9081 OTU 1 seq prokMSA_id:43120 Shewanella sp. MTW-1 2.28.3.20.4.9222 OTU 7 seqs prokMSA_id:9001 Shewanella sp. str. 16.k prokMSA_id:9004 Shewanella woodyi str. MS32 DSM 12036 prokMSA_id:9005 Shewanella woodyi str. MS1 prokMSA_id:9020 barophile WHB 46 clone 1 prokMSA_id:9035 Shewanella hanedai CIP 103207 prokMSA_id:9036 Shewanella hanedai str. IC050 ACAM 585 prokMSA_id:9037 str. KMG427 2.28.3.20.4.9227 OTU 1 seq prokMSA_id:80118 clone:OHKB4.78 2.28.3.20.4.9384 OTU 12 seqs prokMSA_id:8976 Moritella marina str. MP-1 NCIMB 1144 prokMSA_id:8977 Moritella viscosa str. NVI 88/478T prokMSA_id:8978 Moritella ODA02 prokMSA_id:8979 Moritella HAS1123 prokMSA_id:8983 Moritella HAR13 prokMSA_id:8985 Moritella SC20 prokMSA_id:8986 Moritella SC22 prokMSA_id:8987 Moritella SC25 prokMSA_id:8988 Moritella SC27 prokMSA_id:8995 Moritella viscosa str. 478/88 prokMSA_id:33284 Moritella marina prokMSA_id:72172 Moritella sp. strain 2674 2.28.3.20.4.9411 OTU 1 seq prokMSA_id:69757 Shewanella waksmanii 2.28.3.20.5 SHE.PUTREFACIENS_SUBGROUP 91 seqs 2.28.3.20.5.8189 OTU 1 seq prokMSA_id:50125 Shewanella frigidimarina strain ACAM 562 2.28.3.20.5.8371 OTU 1 seq prokMSA_id:46569 gamma SIC.10369 2.28.3.20.5.8648 OTU 1 seq prokMSA_id:41357 clone t012 2.28.3.20.5.8662 OTU 66 seqs prokMSA_id:9044 Shewanella frigidimarina str. A173 ACAM 584. U85902 prokMSA_id:9047 Shewanella frigidimarina str. IC010 ACAM 600. U85906 prokMSA_id:9048 Shewanella sp. str. SC2A. AB003190 prokMSA_id:9050 Shewanella Ac10 str. Ac10. AF061557 prokMSA_id:9053 Shewanella frigidimarina NCIMB 400. Y13699 prokMSA_id:9057 Shewanella putrefaciens str. B.W. Hammer 95 ATCC 8071 . X821 prokMSA_id:9060 Shewanella oneidensis str. SP-22. AF039055 prokMSA_id:9068 Shewanella baltica NCTC 10735 . AJ000214 prokMSA_id:9069 Shewanella putrefaciens str. A6 prokMSA_id:9070 Shewanella putrefaciens str. F137 prokMSA_id:9071 Shewanella putrefaciens NCTC 10695 prokMSA_id:9072 Shewanella MR-4 str. MR-4. AF005252 prokMSA_id:9073 Shewanella MR-7 str. MR-7 prokMSA_id:9074 Shewanella MR-8 str. MR-8 prokMSA_id:9075 Shewanella baltica str. OS155 prokMSA_id:9076 Shewanella baltica str. OS195. AJ000216 prokMSA_id:9079 Shewanella massilia prokMSA_id:9094 Shewanella putrefaciens LMG 2268 . X81623 prokMSA_id:9097 Shewanella algae str. BrY. X81621 prokMSA_id:9098 Shewanella putrefaciens str. A31 prokMSA_id:9101 Shewanella putrefaciens ACAM 577. AF006672 prokMSA_id:9102 Shewanella putrefaciens ACAM 574. AF006670 prokMSA_id:9105 clone Aspo5 prokMSA_id:9106 Shewanella putrefaciens NCIMB 12577 prokMSA_id:9108 Shewanella putrefaciens str. MR-30 prokMSA_id:9110 Shewanella ML-S3 str. ML-S3. AF140017 prokMSA_id:9111 Shewanella ML-S2 str. ML-S2. AF140016 prokMSA_id:9113 Shewanella oneidensis str. MR-1 prokMSA_id:16931 Shewanella frigidimarina strain LMG19867 AJ300833 prokMSA_id:19933 Shewanella sp. isolate SK-3-30-1 prokMSA_id:20504 Shewanella frigidimarina strain ACAM 552 AF132871 prokMSA_id:24664 Shewanella oneidensis strain SP-7 AF039054 prokMSA_id:29356 Shewanella sp. SIS1 AB039739 prokMSA_id:32956 Shewanella sp. CL256/73 AF387346 prokMSA_id:33931 Shewanella oneidensis AF387347 prokMSA_id:35898 Polar sea R7216 AJ295714 prokMSA_id:37367 Shewanella sp. 184 AF387349 prokMSA_id:38945 Shewanella frigidimarina strain ACAM 557 prokMSA_id:47655 Shewanella sp. SIB1 AB039737 prokMSA_id:51097 W3 18-1 AF387350 prokMSA_id:55466 Shewanella oneidensis MR-1 section 272 of 457 of the complet prokMSA_id:57774 Shewanella oneidensis MR-1 section 431 of 457 of the complet prokMSA_id:57775 Shewanella oneidensis MR-1 section 455 of 457 of the complet prokMSA_id:57777 Shewanella oneidensis MR-1 section 430 of 457 of the complet prokMSA_id:57778 Shewanella oneidensis MR-1 section 343 of 457 of the complet prokMSA_id:57779 Shewanella oneidensis MR-1 section 402 of 457 of the complet prokMSA_id:57780 Shewanella oneidensis MR-1 section 24 of 457 of the complete prokMSA_id:57781 Shewanella oneidensis MR-1 section 19 of 457 of the complete prokMSA_id:57784 Shewanella oneidensis MR-1 section 4 of 457 of the complete prokMSA_id:70682 S.putrefaciens X81623 prokMSA_id:74152 Shewanella livingstonis strain LMG19866T AJ300834 prokMSA_id:75631 Shewanella sp. Ko702 AF550588 prokMSA_id:75869 Shewanella sp. Ko704 AF550589 prokMSA_id:79977 clone ARKCH4-100 AF468269 prokMSA_id:80135 clone ARKDMS-30 prokMSA_id:80288 clone ARKCH2Br2-49 AF468231 prokMSA_id:80425 Arctic sea ice ARK10035 AF468387 prokMSA_id:80569 clone ARKIA-82 prokMSA_id:81492 Shewanella sp. ANT9071 prokMSA_id:84722 Alteromonadaceae RE1-1 prokMSA_id:85371 Alteromonadaceae RE2-10 prokMSA_id:86253 Alteromonadaceae E1 prokMSA_id:86623 Antarctic R-12605 strain R-12605 prokMSA_id:87848 Shewanella livingstonensis strain GA-22 AJ563805 prokMSA_id:89905 Shewanella putrefaciens AY321590 prokMSA_id:93758 Shewanella sp. WW001 AB111109 2.28.3.20.5.8916 OTU 2 seqs prokMSA_id:9042 Shewanella algae str. OK-1 IAM 14159 prokMSA_id:9064 Shewanella alga str. 43940 2.28.3.20.5.9067 OTU 1 seq prokMSA_id:9067 Shewanella alga ACM 4733 2.28.3.20.5.9147 OTU 1 seq prokMSA_id:9041 Shewanella sp. ACAM 122 2.28.3.20.5.9247 OTU 4 seqs prokMSA_id:9077 Shewanella KMM3299 KMM 3299 prokMSA_id:87528 Shewanella japonica isolate KMM 3597 AF500075 prokMSA_id:87894 Shewanella japonica isolate KMM 3590 AF500076 prokMSA_id:87995 Shewanella japonica isolate KMM 3577 AF500078 2.28.3.20.5.9296 OTU 1 seq prokMSA_id:72648 gamma CHAB-I-7 5' 2.28.3.20.5.9344 OTU 9 seqs prokMSA_id:9062 Shewanella algae str. FeRed prokMSA_id:9063 Shewanella alga str. 14.80-A prokMSA_id:9065 Shewanella alga str. T# 8 prokMSA_id:9066 Shewanella alga str. 68872 prokMSA_id:9112 Shewanella algae ATCC 51192 prokMSA_id:28400 Shewanella alga prokMSA_id:46882 Shewanella sp. A6.mk prokMSA_id:71500 Alteromonadaceae PH39 prokMSA_id:72739 S.alga Bry 2.28.3.20.5.9367 OTU 1 seq prokMSA_id:47581 PV-4 2.28.3.20.5.9393 OTU 1 seq prokMSA_id:22553 Shewanella sp. isolate Bok-1-30-2 2.28.3.20.5.9416 OTU 1 seq prokMSA_id:84951 Alteromonadaceae R8 2.28.3.20.5.9586 OTU 1 seq prokMSA_id:79941 Shewanella gaetbuli 2.28.3.21 PSM.ANTARC_GROUP 23 seqs 2.28.3.21.8579 OTU 21 seqs prokMSA_id:9115 str. 90-Pgv1 prokMSA_id:9117 Psychromonas IC004 str. IC004 prokMSA_id:9120 str. 174 prokMSA_id:9121 Psychromonas antarctica str. star-1 DSM 10704. Y14697 prokMSA_id:21481 Psychromonas kaikoae strain:JT7304 prokMSA_id:25724 Psychromonas profunda prokMSA_id:32735 Marine Mst85 strain Mst85 AJ400705 prokMSA_id:38990 Psychromonas arctica complete prokMSA_id:39185 Psychromonas sp. Ant5-5 prokMSA_id:47163 Marine psychrotrophic MK242 prokMSA_id:61119 Psychromonas sp. MGP-29/AN1 prokMSA_id:71948 Alteromonas sp. KT1114 prokMSA_id:72165 Alteromonas sp. KT1102 AF235123 prokMSA_id:73094 Marine psychrotrophic Mst37 strain Mst37 prokMSA_id:73561 Alteromonas sp. KT1116 prokMSA_id:79713 clone ARKIA-79 prokMSA_id:80094 clone ARKDMS-45 prokMSA_id:81267 Psychromonas sp. ANT9248 prokMSA_id:81340 Psychromonas sp. ANT9265 prokMSA_id:81844 Psychromonas sp. ANT9282a prokMSA_id:98089 Psychromonas hadaliensis strain:K41G AB094413 2.28.3.21.8633 OTU 1 seq prokMSA_id:23426 Psychromonas sp. NTW-2 2.28.3.21.9508 OTU 1 seq prokMSA_id:9122 str. CNPT3 2.28.3.22 FRM.BALEARICA_GROUP 1 seq 2.28.3.22.8732 OTU 1 seq prokMSA_id:84401 Gamma YSK-2002 2.28.3.23 VIBRIO_GROUP 263 seqs 2.28.3.23.1 PHOTOBACTERIUM_SUBGROUP 56 seqs 2.28.3.23.1.1 V.HOLLISAE_SUBGROUP 4 seqs 2.28.3.23.1.1.8723 OTU 1 seq prokMSA_id:9130 Vibrio RE35F/12 str. RE35F/12 2.28.3.23.1.1.9516 OTU 1 seq prokMSA_id:9126 Vibrio hollisae CIP 101886 2.28.3.23.1.1.9517 OTU 1 seq prokMSA_id:9129 symbiont of Melanocetus johnsoni 2.28.3.23.1.1.9523 OTU 1 seq prokMSA_id:9131 symbiont of Cryptosaras couesi 2.28.3.23.1.2 SAV.COSTICOLA_SUBGROUP 11 seqs 2.28.3.23.1.2.8699 OTU 1 seq prokMSA_id:21048 ECS22 2.28.3.23.1.2.8749 OTU 1 seq prokMSA_id:9142 Salinivibrio vallismortis DSM 8285 2.28.3.23.1.2.8887 OTU 9 seqs prokMSA_id:9132 Vibrio aspartigenicus str. GSP-1 ATCC 49962. M98446 prokMSA_id:9133 Vibrio aspartigenicus str. GSP-1 ATCC 49962. M98446 prokMSA_id:9134 Salinivibrio costicola NCIMB 701 . X74699 prokMSA_id:9136 Salinivibrio costicola NCIMB 701 prokMSA_id:9137 Salinivibrio costicola subsp. pathovar str. AV3. X95528 prokMSA_id:9138 Salinivibrio costicola subsp. pathovar str. cepa 6. X95531 prokMSA_id:9139 Salinivibrio costicola subsp. pathovar str. E-367 prokMSA_id:9140 Salinivibrio costicola subsp. pathovar str. H-178 prokMSA_id:9141 Salinivibrio costicola subsp. pathovar str. V-15. X95530 2.28.3.23.1.3 PHB.DAMSELA_SUBGROUP 14 seqs 2.28.3.23.1.3.9083 OTU 14 seqs prokMSA_id:9143 Photobacterium damsela subsp. piscicida NCIMB 2058 prokMSA_id:9144 Photobacterium damsela str. wild isolate prokMSA_id:9145 Photobacterium damselae subsp. Piscicida str. Kre4 prokMSA_id:9147 Photobacterium damsela subsp. damsela CIP 102761 prokMSA_id:9148 Photobacterium damselae subsp. piscicida str. KP9038 prokMSA_id:9149 Photobacterium histaminum str. C-8 prokMSA_id:20588 Photobacterium damselae subsp. damselae prokMSA_id:41265 Photobacterium histaminum prokMSA_id:95505 Photobacterium damselae subsp. piscicida strain K12 AY147858 prokMSA_id:96255 Photobacterium damselae subsp. piscicida strain CVD3 AY14785 prokMSA_id:97403 Photobacterium damselae subsp. damselae strain CCRC15428 AY1 prokMSA_id:97821 Photobacterium damselae subsp. piscicida strain I736 AY14785 prokMSA_id:98163 Photobacterium damselae subsp. piscicida strain CVD1 AY14785 prokMSA_id:98324 Photobacterium damselae subsp. piscicida strain PN510 AY1478 2.28.3.23.1.4 PHB.LEIOGNATHI_SUBGROUP 6 seqs 2.28.3.23.1.4.8471 OTU 6 seqs prokMSA_id:9151 Photobacterium leiognathi str. L1 CIP 66.5 prokMSA_id:9152 Photobacterium leiognathi str. PL721. Z21730 prokMSA_id:9153 Photobacterium leiognathi str. L1 ATCC 25521 . D11184 prokMSA_id:9154 Photobacterium leiognathi str. L1 ATCC 25521 prokMSA_id:38240 Photobacterium sp. UST991130-005 AF465393 prokMSA_id:83564 Photobacterium sp. YS27-3 2.28.3.23.1.6 PHB.PROFUNDUM_SUBGROUP 8 seqs 2.28.3.23.1.6.8443 OTU 6 seqs prokMSA_id:9159 Photobacterium profundum str. DSJ4 prokMSA_id:9160 Photobacterium profundum str. SS9 prokMSA_id:9161 str. MBIC3157 prokMSA_id:71373 Hyphomicrobium sp. Ddeep-1 prokMSA_id:72659 Photobacterium sp. 16 prokMSA_id:94122 Hyphomicrobium sp. wp13 isolate wp13 AJ551094 2.28.3.23.1.6.8460 OTU 1 seq prokMSA_id:42976 clone Car123rc 2.28.3.23.1.6.9642 OTU 1 seq prokMSA_id:36478 Photobacterium sp. PS11-6 2.28.3.23.1.7 PHB.PHOSPHOREUM_SUBGROUP 13 seqs 2.28.3.23.1.7.8999 OTU 13 seqs prokMSA_id:9157 Photobacterium angustum ATCC 25915 prokMSA_id:9163 Photobacterium iliopiscarium str. PS1 ATCC 51760 prokMSA_id:9165 Photobacterium phosphoreum str. Og61 prokMSA_id:9167 Photobacterium phosphoreum ATCC 11040 prokMSA_id:9168 Photobacterium phosphoreum ATCC 11040 prokMSA_id:20048 Photobacterium sp. HAR72 AB038032 prokMSA_id:22086 Vibrio sp. strain NIBH P2K5 complete prokMSA_id:38706 Photobacterium sp. HAR23 prokMSA_id:67191 Photobacterium sp. D151 AF497998 prokMSA_id:83679 Photobacterium phosphoreum AB095446 prokMSA_id:92082 Photobacterium phosphoreum isolate AK1 AY345889 prokMSA_id:92256 Photobacterium phosphoreum isolate AK6 AY345891 prokMSA_id:92792 Photobacterium phosphoreum isolate AK8 AY345893 2.28.3.23.2 V.ORIENTALIS_SUBGROUP 3 seqs 2.28.3.23.2.8764 OTU 1 seq prokMSA_id:9170 Vibrio orientalis str. 717 CIP 102891 2.28.3.23.2.9425 OTU 1 seq prokMSA_id:9171 Vibrio orientalis str. 716 ATCC 33933 2.28.3.23.2.9567 OTU 1 seq prokMSA_id:63324 clone RCP2-22 2.28.3.23.3 VIBRIO_SUBGROUP 95 seqs 2.28.3.23.3.1 V.FURNISSII_SUBGROUP 2 seqs 2.28.3.23.3.1.8707 OTU 1 seq prokMSA_id:60374 Vibrio sp. PH19 2.28.3.23.3.1.8785 OTU 1 seq prokMSA_id:9175 Vibrio fluvialis str. VL 5125 NCTC 11327 2.28.3.23.3.2 V.NEREIS_SUBGROUP 3 seqs 2.28.3.23.3.2.8694 OTU 1 seq prokMSA_id:34147 Vibrio sp. UST991130-023 2.28.3.23.3.2.9465 OTU 1 seq prokMSA_id:26621 gamma TIHP302-28 2.28.3.23.3.2.9525 OTU 1 seq prokMSA_id:33548 Vibrio sp. UST991130-028 2.28.3.23.3.3 V.SALMONICIDA_SUBGROUP 4 seqs 2.28.3.23.3.3.8531 OTU 4 seqs prokMSA_id:9184 Vibrio wodanis str. NVI 88/441T. AJ132227 prokMSA_id:20390 Vibrio logei AF323992 prokMSA_id:33640 Vibrio logei strain NCIMB 2252 prokMSA_id:65248 Vibrio sp. Torgnes 1 2.28.3.23.3.4 V.FISCHERI_SUBGROUP 2 seqs 2.28.3.23.3.4.9473 OTU 1 seq prokMSA_id:80175 clone ARKDMS-58 2.28.3.23.3.4.9522 OTU 1 seq prokMSA_id:9195 clone HstpL49 2.28.3.23.3.5 V.PROTEOLYTICUS_SUBGROUP 4 seqs 2.28.3.23.3.5.8608 OTU 2 seqs prokMSA_id:26819 Vibrio sp. UST991130-007 AF465395 prokMSA_id:82011 Vibrio sp. BLI-41 2.28.3.23.3.5.9066 OTU 1 seq prokMSA_id:9201 Vibrio nigripulchritudo CIP 103195 2.28.3.23.3.5.9166 OTU 1 seq prokMSA_id:50709 Marine gamma SWAT2 2.28.3.23.3.6 V.HARVEYI_SUBGROUP 80 seqs 2.28.3.23.3.6.8543 OTU 1 seq prokMSA_id:50075 Vibrio sp. NBF10 2.28.3.23.3.6.8560 OTU 1 seq prokMSA_id:17817 gamma MERTZ_2CM_275 2.28.3.23.3.6.8665 OTU 72 seqs prokMSA_id:9180 Vibrio tubiashii CIP 102760 . X74725 prokMSA_id:9196 Vibrio proteolyticus str. 262 CIP 102892 prokMSA_id:9205 Vibrio campbellii str. 40 CIP 75.01 prokMSA_id:9207 Vibrio Lu1 str. Lu1 prokMSA_id:9208 Vibrio halioticoli str. A431 IAM 14596 prokMSA_id:9209 Vibrio halioticoli IAM 14597 prokMSA_id:9210 Vibrio halioticoli IAM 14598 prokMSA_id:9211 Vibrio halioticoli IAM 14599 prokMSA_id:9214 Vibrio harveyi ATCC 35084 prokMSA_id:9215 Vibrio carchariae prokMSA_id:9216 Vibrio Lu8 str. Lu8 prokMSA_id:9219 Vibrio campbellii str. 40 ATCC 25920 prokMSA_id:9223 Vibrio alginolyticus CIP 70.65 prokMSA_id:9226 Vibrio alginolyticus str. XII-53 ATCC 17749 prokMSA_id:9227 Vibrio parahaemolyticus CIP 73.30 prokMSA_id:9229 Vibrio NAP-4 str. NAP-4 prokMSA_id:9230 Vibrio natriegens str. 111 CIP 103193 prokMSA_id:9233 Vibrio mytili prokMSA_id:9234 Vibrio alginolyticus str. XII-53 CIP 75.03 prokMSA_id:9238 Vibrio natriegens str. 111 ATCC 14048 prokMSA_id:9240 Vibrio parahaemolyticus str. 113 CIP 75.02 prokMSA_id:9243 Vibrio harveyi CIP 103192 prokMSA_id:19456 Vibrio sp prokMSA_id:21967 Vibrio sp. 73 prokMSA_id:24526 Vibrio sp. Ex25 prokMSA_id:26876 Vibrio sp. AS-32 prokMSA_id:29344 Vibrio sp. BB4 prokMSA_id:31661 Vibrio campbellii prokMSA_id:34170 Vibrio sp. NLEP97-1598 prokMSA_id:36201 Vibrio parahaemolyticus clone F44 prokMSA_id:45699 Vibrio sp. AB003 prokMSA_id:47824 Vibrio parahaemolyticus clone Vp23 prokMSA_id:48633 Vibrio parahaemolyticus clone Vp 27 prokMSA_id:50883 Vibrio harveyi strain M4 prokMSA_id:55336 Vibrio alginolyticus prokMSA_id:59705 Vibrio sp. 442 prokMSA_id:60045 Vibrio sp. R-14939 strain R-14939 prokMSA_id:60376 Vibrio proteolyticus prokMSA_id:66026 Vibrio sp. C33 prokMSA_id:70114 Vibrio sp. R-15052 strain R-15052 prokMSA_id:71300 Vibrio sp. R-14968 strain R-14968 prokMSA_id:71462 Vibrio sp. 01 prokMSA_id:72620 Vibrio sp. LMG 20546 strain LMG 20546 AJ316172 prokMSA_id:72695 Vibrio sp. 98CJ11027 prokMSA_id:72857 Vibrio sp. LMG 20547 strain LMG 20547 prokMSA_id:72939 Vibrio trachuri strain LMG 19643 AJ312382 prokMSA_id:73398 Vibrio sp. NLEP97-1599 prokMSA_id:73534 Vibrio sp. LMG 19270 strain LMG 19270 prokMSA_id:74377 Vibrio sp. LMG 19970 strain LMG 19970 AJ316206 prokMSA_id:74411 Vibrio sp. LMG 19972 strain LMG 19972 AJ316205 prokMSA_id:81625 Vibrio parahaemolyticus RIMD 2210633 chromosome I complete prokMSA_id:82255 Vibrio parahaemolyticus RIMD 2210633 chromosome II complete prokMSA_id:82286 Vibrio parahaemolyticus chromosome 1 complete 11/11 prokMSA_id:82362 Vibrio parahaemolyticus chromosome 1 complete 1/11 prokMSA_id:83444 Vibrio parahaemolyticus isolate 15 prokMSA_id:84052 Vibrio gallicus strain CIP 107864 prokMSA_id:84057 Vibrio parahaemolyticus isolate L21 prokMSA_id:84064 Vibrio vulnificus isolate 7 prokMSA_id:84254 Vibrio sp. CJ11052 prokMSA_id:84441 Vibrio parahaemolyticus isolate 13 prokMSA_id:84838 Vibrio parahaemolyticus isolate 17 prokMSA_id:84937 Vibrio gallicus strain CIP 107867 AY257975 prokMSA_id:84964 Vibrio gallicus strain CIP 107866 AY257974 prokMSA_id:85262 Vibrio parahaemolyticus isolate 18 prokMSA_id:85428 Vibrio gallicus strain CIP 107865 prokMSA_id:86266 Vibrio parahaemolyticus isolate 21 prokMSA_id:86444 Vibrio gallicus strain CIP 107863 prokMSA_id:86641 Vibrio vulnificus isolate 9 prokMSA_id:86674 Vibrio vulnificus isolate 4 prokMSA_id:91201 Vibrio harveyi strain EcGY020401 AY332564 prokMSA_id:91969 Vibrio harveyi strain EcGS020802 AY332565 prokMSA_id:93965 Vibrio sp. CH-291 AJ580582 2.28.3.23.3.6.9174 OTU 1 seq prokMSA_id:30332 Vibrio sp. UST991130-046 2.28.3.23.3.6.9192 OTU 1 seq prokMSA_id:42368 gamma TIHP302-30 2.28.3.23.3.6.9223 OTU 1 seq prokMSA_id:83211 Vibrio parahaemolyticus isolate 22 2.28.3.23.3.6.9333 OTU 1 seq prokMSA_id:9213 Vibrio parahaemolyticus str. 113 ATCC 17802 2.28.3.23.3.6.9395 OTU 1 seq prokMSA_id:24993 Vibrio sp. GIT-14 2.28.3.23.3.6.9593 OTU 1 seq prokMSA_id:70729 Vibrio sp. 05 2.28.3.23.4 V.MEDITERRANEI_SUBGROUP 14 seqs 2.28.3.23.4.8223 OTU 8 seqs prokMSA_id:29041 Gamma NW4079 AF384142 prokMSA_id:38009 marine PP-145.98 prokMSA_id:60378 Vibrio sp. PH1 prokMSA_id:66767 Vibrio corallilyticus strain LMG 20984 prokMSA_id:70057 Vibrio corallilyticus strain LMG 21349 AJ440004 prokMSA_id:71152 Vibrio sp. LMG 20548 strain LMG 20548 AJ316170 prokMSA_id:72904 Vibrio sp. LMG 20536 strain LMG 20536 prokMSA_id:73319 Vibrio sp. LMG 10953 strain LMG 10953 2.28.3.23.4.9207 OTU 1 seq prokMSA_id:9246 symbiont of Anomalops katoptron 2.28.3.23.4.9430 OTU 1 seq prokMSA_id:9244 symbiont of Photoblepharon palpebratus 2.28.3.23.4.9432 OTU 1 seq prokMSA_id:9245 symbiont of Photoblepharon palpebratus 2.28.3.23.4.9457 OTU 1 seq prokMSA_id:9249 symbiont of Kryptophanaron alfredi 2.28.3.23.4.9478 OTU 1 seq prokMSA_id:9250 symbiont of Photoblepharon steinetzi 2.28.3.23.4.9624 OTU 1 seq prokMSA_id:51068 Vibrio sp. NBF4 2.28.3.23.5 V.SPLENDIDUS_SUBGROUP 69 seqs 2.28.3.23.5.8267 OTU 21 seqs prokMSA_id:9279 Vibrio tapetis str. B1090 CECT 4600 prokMSA_id:40343 Vibrio sp. Hdeep-1 prokMSA_id:42870 4c prokMSA_id:47083 Vibrio splendidus strain B17 prokMSA_id:56555 Vibrio splendidus strain TNEMF6 prokMSA_id:69396 Vibrio splendidus strain LMG 10952 prokMSA_id:70080 Vibrio chagasii strain LMG 13237 prokMSA_id:71509 Vibrio sp. R-3712 strain R-3712 prokMSA_id:71896 Vibrio sp. LMG 20539 strain LMG 20539 prokMSA_id:71902 Vibrio sp. AS-42 prokMSA_id:72056 Vibrio sp. PMV18 complete prokMSA_id:73227 Vibrio pomeroyi strain LMG 20537T AJ491290 prokMSA_id:73863 Vibrio sp. Cdeep-1 prokMSA_id:74459 Vibrio splendidus strain TNNIII7 prokMSA_id:78597 Vibrio tapetis strain LP2 prokMSA_id:82987 Vibrio sp. 3 prokMSA_id:83553 Vibrio sp. 6 prokMSA_id:84666 Vibrio splendidus prokMSA_id:85453 Vibrio sp. L5 prokMSA_id:86378 Pseudoalteromonas sp. R9 prokMSA_id:86584 Vibrio sp. 13a 2.28.3.23.5.8394 OTU 1 seq prokMSA_id:9282 Vibrio rumoiensis str. S-1 2.28.3.23.5.8589 OTU 6 seqs prokMSA_id:17434 Vibrio sp. OM02 prokMSA_id:23581 clone 249 prokMSA_id:25142 clone 272 prokMSA_id:28001 clone 253 prokMSA_id:38260 clone 247 prokMSA_id:39199 clone 334 2.28.3.23.5.8669 OTU 1 seq prokMSA_id:9280 clone HstpL66 2.28.3.23.5.8798 OTU 38 seqs prokMSA_id:9254 Vibrio splendidus CIP 102893 . X74724 prokMSA_id:9270 Vibrio sp. str. A053. AJ132987 prokMSA_id:9272 str. DPT1.2. AJ002567 prokMSA_id:16828 Vibrio lentus strain 40M4T CECT 5110T AJ278881 prokMSA_id:24584 Vibrio aestuarianus AF172840 prokMSA_id:26431 Vibrio sp. ED4 prokMSA_id:26484 Vibrio sp. EN280 AB038024 prokMSA_id:26716 Vibrio sp. Da2 prokMSA_id:31562 Vibrio sp. Sr3 prokMSA_id:43627 Vibrio sp. OC25 prokMSA_id:45173 Vibrio sp. TK327 AB038025 prokMSA_id:46227 Vibrio sp. Da4 prokMSA_id:46685 Vibrio sp. 3d clone 3d2 prokMSA_id:49860 Vibrio sp. Sk1 prokMSA_id:51176 Vibrio lentus strain 3OM21 CECT 5293 AJ278880 prokMSA_id:52051 Vibrio sp. 3d clone 3d7 prokMSA_id:54302 Vibrio sp. 3d clone 3d8 prokMSA_id:55282 Vibrio splendidus strain A053 clone a prokMSA_id:56212 Vibrio splendidus strain PMV18 prokMSA_id:67338 Vibrio sp. 3d clone 3d4 prokMSA_id:69386 Vibrio splendidus strain VS6turb prokMSA_id:69668 Vibrio splendidus strain LMG 4042 clone a prokMSA_id:69712 Vibrio splendidus strain LMG 4042 clone b prokMSA_id:72001 Vibrio splendidus strain A515 clone b prokMSA_id:72609 Vibrio sp. LT73 complete AF456335 prokMSA_id:73369 Vibrio sp. LT21 complete AF456338 prokMSA_id:73749 Vibrio sp. V4.BP.07 AJ244774 prokMSA_id:73914 Vibrio splendidus strain VC1 prokMSA_id:74026 Vibrio splendidus strain A515 clone a prokMSA_id:74168 Vibrio sp. R-3884 strain R-3884 AJ316200 prokMSA_id:74614 Vibrio splendidus strain LT06 prokMSA_id:78737 Vibrio splendidus strain LP1 prokMSA_id:78974 Vibrio sp. QY101 AY174869 prokMSA_id:82520 Vibrio sp. RE1-3 prokMSA_id:83795 Pseudoalteromonas sp. R12 prokMSA_id:85836 Pseudoalteromonas sp. RE1-12a prokMSA_id:85910 Vibrio sp. WYB prokMSA_id:86573 Vibrio sp. YWA 2.28.3.23.5.9100 OTU 1 seq prokMSA_id:18737 Vibrio kps60rc 2.28.3.23.5.9372 OTU 1 seq prokMSA_id:25702 Vibrio sp. 121 2.28.3.23.7 V.SCOPHTHALMI_SUBGROUP 13 seqs 2.28.3.23.7.8888 OTU 13 seqs prokMSA_id:9247 Vibrio mediterranei CIP 103203 prokMSA_id:9248 Vibrio shiloi str. AK-1 prokMSA_id:9268 Vibrio splendidus str. SCB8 prokMSA_id:9283 Vibrio pectenicida str. A365 CIP 105190 prokMSA_id:9286 Vibrio scophthalmi str. A089 CECT 4638 prokMSA_id:9288 Vibrio aestuarianus str. OY-0-002 CIP 102971 prokMSA_id:40425 Listonella anguillarum AY035897 prokMSA_id:48368 Vibrio ichthyoenteri strain DSM 14397T prokMSA_id:62643 Vibrio sp. No.6 prokMSA_id:70635 Listonella anguillarum serovar O1 AY069970 prokMSA_id:74258 Listonella anguillarum serovar O2a AY069971 prokMSA_id:83112 Vibrionaceae T16 prokMSA_id:85619 Vibrio sp. RE2-8 2.28.3.23.9 V.CHOLERAE_SUBGROUP 6 seqs 2.28.3.23.9.9225 OTU 6 seqs prokMSA_id:9295 Vibrio cholerae CECT 514 prokMSA_id:9299 Vibrio cholerae str. 1094 ATCC 14035 . Z21856 prokMSA_id:9301 Vibrio cholerae str. 1094 CIP 62.13 . X74694 prokMSA_id:9306 Vibrio mimicus CIP 101888 . X74713 prokMSA_id:9308 Vibrio cholerae str. 1062 INSERM U303. X74695 prokMSA_id:53406 Vibrio cholerae chromosome I complete chromosome NC_002505 2.28.3.23.10 V.DIAZOTROPHICUS_SUBGROUP 7 seqs 2.28.3.23.10.8224 OTU 2 seqs prokMSA_id:9321 Vibrio metschnikovii str. MV 2484 NCTC 11170 prokMSA_id:72041 Vibrio sp. LMG 4426 strain LMG 4426 AJ316180 2.28.3.23.10.8912 OTU 1 seq prokMSA_id:9318 clone HstpL17 2.28.3.23.10.8914 OTU 1 seq prokMSA_id:9319 Vibrio aerogenes str. FG1 ATCC 700797 2.28.3.23.10.8964 OTU 1 seq prokMSA_id:47306 Vibrio ruber 2.28.3.23.10.9512 OTU 1 seq prokMSA_id:9313 Vibrio cincinnatiensis ATCC 35912 2.28.3.23.10.9532 OTU 1 seq prokMSA_id:9322 Vibrio metschnikovii CIP 69.14 2.28.3.24 AEROMONAS_GROUP 125 seqs 2.28.3.24.1 RUM.AMYLOPHILUS_SUBGROUP 11 seqs 2.28.3.24.1.8822 OTU 1 seq prokMSA_id:60771 Anaerobiospirillum sp. 3J102 2.28.3.24.1.8860 OTU 2 seqs prokMSA_id:9352 clone JW27 prokMSA_id:9353 clone JW34 2.28.3.24.1.8977 OTU 1 seq prokMSA_id:9351 Succinimonas amylolytica DSM 2873 2.28.3.24.1.8976 OTU 3 seqs prokMSA_id:9348 Ruminobacter amylophilus ATCC 29744 . X06765 prokMSA_id:9349 Ruminobacter amylophilus DSM 1361 . Y15992 prokMSA_id:9350 Ruminobacter amylophilus str. Bovine rumen NIAH 3 2.28.3.24.1.8996 OTU 1 seq prokMSA_id:9356 Anaerobiospirillum succiniciproducens str. S411 ATCC 29305 2.28.3.24.1.8997 OTU 1 seq prokMSA_id:9357 Succinivibrio dextrinosolvens DSM 3072 2.28.3.24.1.9400 OTU 2 seqs prokMSA_id:29865 Anaerobiospirillum thomasii strain DSM 11806T AJ420985 prokMSA_id:60774 Anaerobiospirillum sp. B0101 2.28.3.24.2 ARM.HYDROPHILA_SUBGROUP 114 seqs 2.28.3.24.2.8340 OTU 6 seqs prokMSA_id:9386 Aeromonas ichthiosmia DSM 6393 prokMSA_id:9425 Aeromonas veronii ATCC 35624 prokMSA_id:9437 Aeromonas veronii NCIMB 13015 prokMSA_id:9438 Aeromonas 'CDC 964-83' CDC 964-83 prokMSA_id:49072 Aeromonas veronii prokMSA_id:58410 Aeromonas veronii clone 5 2.28.3.24.2.8364 OTU 4 seqs prokMSA_id:9361 Aeromonas allosaccharophila CECT 4199 prokMSA_id:9362 Aeromonas 'CDC 715-84' CDC 715-84 prokMSA_id:9426 Aeromonas 'CDC 437-84' CDC 437-84 prokMSA_id:58413 Aeromonas veronii clone 4 2.28.3.24.2.8406 OTU 4 seqs prokMSA_id:9401 str. MBIC1298 ATCC 27123 prokMSA_id:9402 str. MBIC1298 ATCC 27123. AB021371 prokMSA_id:35016 Oceanomonas baumannii prokMSA_id:73145 Pseudomonas doudoroffii AF094724 2.28.3.24.2.8621 OTU 1 seq prokMSA_id:25552 Aeromonas sp. PAR2A 2.28.3.24.2.8734 OTU 1 seq prokMSA_id:9403 Aeromonas jandaei str. ST19 2.28.3.24.2.8746 OTU 1 seq prokMSA_id:9405 Aeromonas hydrophila str. LB5 2.28.3.24.2.8812 OTU 1 seq prokMSA_id:84842 Oceanisphaera litoralis strain DSM 15406 2.28.3.24.2.9000 OTU 43 seqs prokMSA_id:9359 Aeromonas salmonicida subsp. smithia CCM 4103 prokMSA_id:9363 Aeromonas hydrophila ATCC 35654 prokMSA_id:9369 Aeromonas media ATCC 33907 prokMSA_id:9372 Aeromonas hydrophila subsp. hydrophila ATCC 7966 prokMSA_id:9381 Aeromonas hydrophila subsp. hydrophila CIP 76.14 prokMSA_id:9382 Aeromonas 'CDC 862-83' CDC 862-83 prokMSA_id:9384 Aeromonas jandaei ATCC 49568 prokMSA_id:9385 Aeromonas culicicola strain MTCC 3249 prokMSA_id:9399 Aeromonas trota ATCC 49657 prokMSA_id:9400 Aeromonas jandaei ATCC 49568 prokMSA_id:9410 Aeromonas jandaei CDC 787-80 prokMSA_id:9411 Aeromonas RC278 str. RC278MM85 prokMSA_id:9417 Aeromonas caviae NCIMB 13016 prokMSA_id:9419 Aeromonas 'CDC 2452-91' CDC 2452-91 prokMSA_id:9421 Aeromonas caviae ATCC 15467. X60409 prokMSA_id:9422 Aeromonas 'CDC 9013-89' CDC 9013-89 prokMSA_id:9424 Aeromonas T8 str. T8 prokMSA_id:9427 Aeromonas RC50 str. RC50; FC643 prokMSA_id:9433 Aeromonas trota ATCC 49657 prokMSA_id:9439 Aeromonas guangheii str. 95-173 prokMSA_id:9445 Aeromonas salmonicida str. NI-441 T83-k-sw-2 IS-205 prokMSA_id:9446 Aeromonas salmonicida str. GU-187 IB-277 prokMSA_id:9452 Aeromonas caviae CIP 76.16 prokMSA_id:9453 Aeromonas media ATCC 33907 prokMSA_id:9454 Aeromonas media str. 86352 prokMSA_id:20270 Aeromonas sp. PG3-3 prokMSA_id:26539 gamma BioIuz K40 prokMSA_id:28522 Aeromonas hydrophila strain 45/90 prokMSA_id:30233 gamma BioIuz K41 prokMSA_id:39643 Aeromonas sp. PG4-1 prokMSA_id:42667 Aeromonas hydrophila strain 4AK4 prokMSA_id:46643 gamma BioIuz K1 prokMSA_id:51245 Aeromonas sp. NLEP A-1607 prokMSA_id:52200 gamma BioIuz K39 prokMSA_id:55879 Aeromonas veronii clone 3 prokMSA_id:58415 Aeromonas veronii clone 1 prokMSA_id:59115 Aeromonas media isolate 4 prokMSA_id:59116 Aeromonas media isolate 6 prokMSA_id:59117 Aeromonas media isolate 5 prokMSA_id:59119 Aeromonas media isolate 3 prokMSA_id:59291 Aeromonas hydrophila subsp. dhakensis strain LMG 19562T prokMSA_id:61814 gamma clone CLs70 prokMSA_id:69929 Aeromonas hydrophila subsp. ranae strain LMG 19707T 2.28.3.24.2.9026 OTU 10 seqs prokMSA_id:9395 Aeromonas salmonicida subsp. salmonicida CIP 103209 prokMSA_id:9398 Aeromonas salmonicida subsp. pectinolytica str. 34mel prokMSA_id:9420 Aeromonas salmonicida subsp. masoucida str. 1-1-1 CIP 103210 prokMSA_id:9444 Aeromonas salmonicida subsp. achromogenes NCIMB 1110 prokMSA_id:9447 Haemophilus piscium NCIMB 1952 prokMSA_id:22088 Aeromonas salmonicida prokMSA_id:34796 Aeromonas salmonicida atypical prokMSA_id:44568 Aeromonas salmonicida prokMSA_id:56271 Aeromonadaceae clone PH-B39N prokMSA_id:74870 Aeromonas hydrophila 2.28.3.24.2.9062 OTU 6 seqs prokMSA_id:9366 Aeromonas sp. str. 93/1060-1. L31915 prokMSA_id:9375 Aeromonas salmonicida subsp. salmonicida NCIMB 1102 . X60405 prokMSA_id:9376 Aeromonas salmonicida subsp. salmonicida NCIMB 1102 . X60406 prokMSA_id:9416 Aeromonas MR-64 str. MR-64 prokMSA_id:42473 Aeromonas sp. ML-S4 prokMSA_id:46545 Elbe River snow isolate Iso10neu 2.28.3.24.2.9245 OTU 1 seq prokMSA_id:82407 clone:A-8 2.28.3.24.2.9440 OTU 13 seqs prokMSA_id:9360 Aeromonas eucrenophila CIP 76.17 prokMSA_id:9389 Aeromonas popoffii LMG 17542 prokMSA_id:9396 Aeromonas encheleia str. A 1881 prokMSA_id:9406 Aeromonas eucrenophila NCIMB 74 prokMSA_id:9407 Aeromonas 'CDC 859-83' CDC 859-83 prokMSA_id:9415 Aeromonas sobria NCIMB 12065 prokMSA_id:9431 Aeromonas sp. ATCC 35941 prokMSA_id:9434 Aeromonas sobria CIP 74.33 prokMSA_id:43157 Aeromonas sp prokMSA_id:67000 Aeromonas sp. LMG 13062 strain LMG 13062 prokMSA_id:67001 Aeromonas sp. LMG 17065 . strain LMG 17065 prokMSA_id:67002 Aeromonas sp. LMG 16405 strain LMG 16405 prokMSA_id:67005 Aeromonas sp. LMG 13061 strain LMG 13061 2.28.3.24.2.9460 OTU 1 seq prokMSA_id:22488 Aeromonas sp. A33 2.28.3.24.2.9494 OTU 20 seqs prokMSA_id:9365 Aeromonas hydrophila str. Ef1L1 prokMSA_id:9367 Aeromonas schubertii ATCC 43700 prokMSA_id:9418 Aeromonas 'CDC 9017-79' CDC 9017-79. U88657 prokMSA_id:9449 Aeromonas schubertii DSM 4882 prokMSA_id:9450 Aeromonas 'CDC 2478-85' CDC 2478-85 prokMSA_id:18994 Aeromonas sp. 54 isolate 54 prokMSA_id:21594 gamma BioIuz K43 prokMSA_id:34508 KF/GS-JG36-20 prokMSA_id:36658 Aeromonas sp. BC16 prokMSA_id:40526 gamma BioIuz K30 prokMSA_id:46908 gamma BioIuz K33 prokMSA_id:47441 Elbe River snow isolate Iso19neu AF150699 prokMSA_id:56067 Aeromonas media isolate 1 AF418214 prokMSA_id:58414 Aeromonas veronii clone 2 AF418210 prokMSA_id:61823 gamma clone CLi66 prokMSA_id:66205 Aeromonas sp. strain RR8 prokMSA_id:78159 gamma clone:APe2_12 AB074594 prokMSA_id:78527 Aeromonas simiae strain IBS S6652 prokMSA_id:79043 Aeromonas simiae strain IBS S6874T prokMSA_id:82433 clone:A-9 2.28.3.24.2.9537 OTU 1 seq prokMSA_id:47170 clone LRS19 2.28.3.24.2.9539 OTU 1 seq prokMSA_id:9448 clone 12-18 2.28.3.26 HAEMOPHILUS-PASTEURELLA_GROUP 194 seqs 2.28.3.26.4 PAS.BISGAARD_TAXON_13_SUBGROUP 15 seqs 2.28.3.26.4.8509 OTU 1 seq prokMSA_id:84897 soil clone Tc131-39 2.28.3.26.4.9360 OTU 14 seqs prokMSA_id:16802 Pasteurella multocida strain PM966 AY078997 prokMSA_id:17819 Pasteurella multocida subsp. gallicida AF294412 prokMSA_id:18195 Pasteurella multocida subsp. septica strain CCUG 17977 prokMSA_id:18868 Pasteurella multocida strain PM2 prokMSA_id:19379 Pasteurella multocida subsp. gallicida strain HIM830-7T AF32 prokMSA_id:29263 Pasteurella multocida subsp. septica prokMSA_id:34012 Pasteurella sp. MCCM 00657 AF224298 prokMSA_id:37549 Pasteurella multocida subsp. septica strain NCTC 11995 prokMSA_id:37670 Pasteurella multocida subsp. multocida strain NCTC 10322 AY0 prokMSA_id:42806 Pasteurella multocida subsp. gallicida AF224297 prokMSA_id:45341 Pasteurella multocida subsp. gallicida strain NCTC 10204 AY0 prokMSA_id:49634 Pasteurella multocida subsp. septica AF326325 prokMSA_id:62944 Pasteurella multocida subsp. tigris complete prokMSA_id:72192 Pasteurella multocida subsp. gallicida strain 77179 2.28.3.26.5 PAS.DAGMATIS 1 seq 2.28.3.26.5.9476 OTU 1 seq prokMSA_id:69985 Pasteurella pneumotropica 2.28.3.26.7 PASTEURELLA.CANIS 1 seq 2.28.3.26.7.9349 OTU 1 seq prokMSA_id:18332 Pasteurella sp. 91985 2.28.3.26.9 PAS.ANATIS_SUBGROUP 25 seqs 2.28.3.26.9.8416 OTU 18 seqs prokMSA_id:9468 Pasteurella anatis str. F149 ATCC 43329 . M75054 prokMSA_id:30522 Pasteurella anatis strain F149 prokMSA_id:34804 Salpingitia sp. Gerl.3348/80 prokMSA_id:48840 Salpingitia sp. Gerl.220 prokMSA_id:50261 Salpingitia sp. BK3387.2 prokMSA_id:64294 Pasteurella anatis strain B96/24 AY038593 prokMSA_id:70037 Salpingitia sp. CCM 5995 prokMSA_id:70476 Salpingitia sp. 12158 prokMSA_id:71725 Salpingitia sp. 20558 prokMSA_id:72708 Salpingitia sp. 10672/6 prokMSA_id:73007 Pasteurella anatis strain Hom.3 prokMSA_id:73377 Salpingitia sp. BJ3453 prokMSA_id:73524 Salpingitia sp. 36961/sv7 prokMSA_id:73614 Salpingitia sp. Gerl.4224 prokMSA_id:73745 Salpingitia sp. IPDH 697/78 prokMSA_id:74034 Actinobacillus cf. salpingitidis CCUG 28018 prokMSA_id:74083 Pasteurella anatis strain F279 prokMSA_id:74275 Salpingitia sp. 10672/9 2.28.3.26.9.8465 OTU 1 seq prokMSA_id:9470 Pasteurella sp. str. Bisgaard Taxon 2 2.28.3.26.9.8803 OTU 5 seqs prokMSA_id:27031 Salpingitia sp. CCM 5976 prokMSA_id:42277 Salpingitia sp. Gerl.2740/89 prokMSA_id:52792 Salpingitia sp. CCM 5974 prokMSA_id:64296 Actinobacillus salpingitidis prokMSA_id:70689 Salpingitia sp. CCM 5975 2.28.3.26.9.9659 OTU 1 seq prokMSA_id:9469 Pasteurella sp. str. Bisgaard Taxon 3 2.28.3.26.10 H.INFLUENZAE_SUBGROUP 27 seqs 2.28.3.26.10.8195 OTU 11 seqs prokMSA_id:9471 Haemophilus influenzae ATCC 33391 prokMSA_id:9473 Haemophilus influenzae str. Rd =rrnD . L42023 prokMSA_id:9476 Haemophilus influenzae str. biotype IV CIP 5483. X87977 prokMSA_id:9481 Haemophilus influenzae str. Rd =rrnE . L42023 prokMSA_id:9482 Haemophilus influenzae str. Rd =rrnC . L42023 prokMSA_id:9483 Haemophilus influenzae str. Rd =rrnF . L42023 prokMSA_id:9500 Haemophilus influenzae str. Rd =rrnB . L42023 prokMSA_id:9507 Haemophilus influenzae str. Rd = . L42023 prokMSA_id:49616 Haemophilus influenzae Rd complete genome NC_000907 prokMSA_id:71828 Haemophilus influenzae AF076035 prokMSA_id:88850 Haemophilus sp. isolate PCR amplicon RL 2108 AY325756 2.28.3.26.10.8205 OTU 1 seq prokMSA_id:9477 Pasteurella pneumotropica NCTC 8141 2.28.3.26.10.8278 OTU 1 seq prokMSA_id:33152 Pasteurella salmonicida isolate 95A1 2.28.3.26.10.8555 OTU 6 seqs prokMSA_id:9479 Haemophilus influenzae str. biotype III CCUG 7585 prokMSA_id:9514 Actinobacillus porcinus str. NM319 prokMSA_id:44852 Haemophilus influenzae ATCC 9833 prokMSA_id:73432 Actinobacillus capsulatus P796 AF224295 prokMSA_id:82586 Pasteurella gallinarum strain NCTC 11051 prokMSA_id:82728 Pasteurella gallinarum strain R44sv 2.28.3.26.10.9213 OTU 3 seqs prokMSA_id:9484 Haemophilus influenzae str. 2406. X87979 prokMSA_id:9509 Haemophilus influenzae str. 16N CIP 103723 prokMSA_id:46278 Haemophilus quentini AF224307 2.28.3.26.10.9470 OTU 2 seqs prokMSA_id:9478 Pasteurella pneumotropica str. CNP 160 prokMSA_id:74548 Pasteurellaceae gen. sp. Forsyth A3 2.28.3.26.10.9477 OTU 1 seq prokMSA_id:19891 Haemophilus influenzae ATCC 8142 2.28.3.26.10.9546 OTU 1 seq prokMSA_id:9510 Actinobacillus delphinicola str. M1063L NCTC 12871 2.28.3.26.10.9552 OTU 1 seq prokMSA_id:9511 Pasteurella phocoenarum str. M1063U NCTC 12872 2.28.3.26.11 H.PARASUIS_SUBGROUP 31 seqs 2.28.3.26.11.8228 OTU 6 seqs prokMSA_id:22523 Actinobacillus indolicus strain H1422 prokMSA_id:42737 Actinobacillus indolicus strain H1261 prokMSA_id:49124 Actinobacillus indolicus strain H1419 prokMSA_id:70885 Actinobacillus indolicus strain H1235 prokMSA_id:71115 Actinobacillus indolicus strain H1106 prokMSA_id:72436 Actinobacillus indolicus strain H1271 AF268963 2.28.3.26.11.8800 OTU 8 seqs prokMSA_id:9533 Haemophilus parasuis str. 354 prokMSA_id:9534 Haemophilus parasuis str. 362. AB004029 prokMSA_id:9535 Haemophilus parasuis str. 366. AB004030 prokMSA_id:9536 Haemophilus parasuis str. 697 prokMSA_id:9537 Haemophilus parasuis str. Nagasaki MAFF 911038 prokMSA_id:23554 Haemophilus parasuis strain:322 AB078974 prokMSA_id:24900 Haemophilus parasuis isolate:319 AB078973 prokMSA_id:30824 Haemophilus parasuis isolate:312 2.28.3.26.11.8861 OTU 6 seqs prokMSA_id:9519 Haemophilus parasuis str. No.131 prokMSA_id:9521 Haemophilus parasuis str. 271 prokMSA_id:9523 Haemophilus parasuis str. 427 prokMSA_id:9528 Haemophilus parasuis str. 82 prokMSA_id:31672 Actinobacillus indolicus strain H1269 prokMSA_id:71539 Actinobacillus indolicus strain H873 2.28.3.26.11.8938 OTU 4 seqs prokMSA_id:9515 str. JF1390. AF025839 prokMSA_id:29369 Pasteurella aerogenes MCCM 01551 prokMSA_id:73163 Actinobacillus rossii prokMSA_id:73923 Pasteurella aerogenes MCCM 01550 2.28.3.26.11.8947 OTU 1 seq prokMSA_id:32352 Bisgaardia hudsonenesis strain 98-D-690B 2.28.3.26.11.9234 OTU 1 seq prokMSA_id:9513 Actinobacillus indolicus str. 46KC2 2.28.3.26.11.9355 OTU 1 seq prokMSA_id:21372 clone p-4752-2Wb2 2.28.3.26.11.9587 OTU 4 seqs prokMSA_id:70062 Actinobacillus porcinus strain H1498 prokMSA_id:70580 clone p-4307-4Wa3 prokMSA_id:71733 Actinobacillus porcinus strain H1281 prokMSA_id:73816 Actinobacillus porcinus strain H1215 2.28.3.26.13 H.DUCREYI_SUBGROUP 1 seq 2.28.3.26.13.8171 OTU 1 seq prokMSA_id:9545 Haemophilus ducreyi CIP 542 2.28.3.26.14 PAS.TREHALOSI_SUBGROUP 5 seqs 2.28.3.26.14.9443 OTU 5 seqs prokMSA_id:9551 Mannheimia haemolytica NCTC 10624. M75063 prokMSA_id:9552 Pasteurella trehalosi str. T3 PH 68. U57073 prokMSA_id:9553 Pasteurella trehalosi str. T10 PH 252. U57074 prokMSA_id:9554 Pasteurella trehalosi str. T4 PH 246. U57075 prokMSA_id:58590 rumen clone:RE8 2.28.3.26.15 PAS.VOLANTIUM_SUBGROUP 3 seqs 2.28.3.26.15.8480 OTU 1 seq prokMSA_id:9555 Haemophilus haemoglobinophilus NCTC 1659 2.28.3.26.15.9030 OTU 1 seq prokMSA_id:85860 Bisgaard Taxon 33 strain B96/5 2.28.3.26.15.9626 OTU 1 seq prokMSA_id:36769 Haemophilus sp. MCCM 01557 2.28.3.26.17 ACB.PLEUROPNEUMONIAE_SUBGROUP 16 seqs 2.28.3.26.17.8614 OTU 1 seq prokMSA_id:21084 Acidithiobacillus thiooxidans 2.28.3.26.17.8830 OTU 3 seqs prokMSA_id:9565 Pasteurella sp. str. Bisgaard Taxon 9. L06084 prokMSA_id:72164 Actinobacillus sp. F 92 AF247714 prokMSA_id:73547 Actinobacillus sp. CCUG 24862 2.28.3.26.17.8952 OTU 5 seqs prokMSA_id:9579 Actinobacillus lignieresii NCTC 4189 prokMSA_id:9581 Actinobacillus pleuropneumoniae str. 77002 prokMSA_id:9583 Actinobacillus pleuropneumoniae str. 658 prokMSA_id:9587 Actinobacillus pleuropneumoniae str. R.Shope 4074? ATCC 2708 prokMSA_id:42766 Actinobacillus pleuropneumoniae HS143 2.28.3.26.17.9154 OTU 1 seq prokMSA_id:45954 Actinobacillus sp. CCUG 28015 2.28.3.26.17.9263 OTU 6 seqs prokMSA_id:9572 Actinobacillus equuli NCTC 8529 . M75072 prokMSA_id:9585 Actinobacillus capsulatus CCUG 19799 prokMSA_id:9586 Actinobacillus capsulatus str. 63595 prokMSA_id:58551 Actinobacillus sp. F 154 prokMSA_id:58552 Actinobacillus sp. F 119 prokMSA_id:70103 Actinobacillus cf. equuli 2.28.3.26.18 MNH.HAEMOLYTICA_SUBGROUP 47 seqs 2.28.3.26.18.8876 OTU 1 seq prokMSA_id:9591 Mannheimia R19.2 str. R19.2 CCUG 38463 2.28.3.26.18.8935 OTU 3 seqs prokMSA_id:9593 Mannheimia haemolytica str. PH360; serotype UG4 prokMSA_id:9601 Mannheimia haemolytica str. PH40; UT35; serotype UG4 prokMSA_id:9611 Mannheimia varigena str. 177 CCUG 38462 2.28.3.26.18.9096 OTU 1 seq prokMSA_id:9608 Mannheimia granulomatis str. 26 ATCC 49244 2.28.3.26.18.9109 OTU 3 seqs prokMSA_id:9602 Pasteurella sp. str. Bisgaard Taxon 15 CCUG 16500 prokMSA_id:9612 Mannheimia varigena str. F155 CCM 5786 prokMSA_id:38515 Pasteurella haemolytica CCUG 28148 2.28.3.26.18.9237 OTU 38 seqs prokMSA_id:9577 Actinobacillus hominis CCUG 19800 . L06076 prokMSA_id:9582 Actinobacillus pleuropneumoniae str. 634. AF033058 prokMSA_id:9590 Mannheimia haemolytica str. PH704; serotype UG5 prokMSA_id:9592 Mannheimia HPA121 str. HPA121 CCUG 38468 prokMSA_id:9596 Mannheimia haemolytica str. PH2PH8; serotype A1 prokMSA_id:9597 Mannheimia glucosida str. P731 CCUG 38456 prokMSA_id:9598 Mannheimia glucosida str. UT18 CCUG 38458 prokMSA_id:9599 Mannheimia HPA102 str. HPA102 CCUG 38464 prokMSA_id:9600 Mannheimia haemolytica NCTC 9380 prokMSA_id:9603 Mannheimia ruminalis str. HPA92 CCUG 38470 prokMSA_id:9604 Mannheimia UT26 str. UT26 CCUG 38455 prokMSA_id:9605 Mannheimia ruminalis str. HPA98 CCUG 38466 prokMSA_id:9606 Mannheimia haemolytica str. PH290; serotype UG3 prokMSA_id:9607 Mannheimia glucosida str. P733 CCUG 38460 prokMSA_id:9610 Mannheimia glucosida str. P730. AF053897 prokMSA_id:9613 Mannheimia haemolytica str. PH152; UT23; serotype UG3 prokMSA_id:9614 Mannheimia glucosida str. P737 CCUG 38459 prokMSA_id:9615 Mannheimia haemolytica str. PH344; serotype A11 prokMSA_id:9616 Mannheimia glucosida str. P925 CCUG 38457 prokMSA_id:18347 clone p-1338-a2 AF371854 prokMSA_id:26862 Actinobacillus minor strain H1475 AF268951 prokMSA_id:31668 Actinobacillus minor strain H1468 AF268947 prokMSA_id:50727 clone p-2130-s959-2 AF371853 prokMSA_id:56644 Actinobacillus equuli strain T 355/87 AF247721 prokMSA_id:62471 Haemophilus ducreyi isolate Amsterdam prokMSA_id:69899 Actinobacillus arthritidis prokMSA_id:70395 Actinobacillus lignieresii strain F 264 AF247723 prokMSA_id:70644 Actinobacillus porcitonsillarum strain 99-536-55H-F AF486274 prokMSA_id:72024 Actinobacillus sp. H 4272/4 AF247719 prokMSA_id:73306 Actinobacillus porcitonsillarum strain RF0347 AF486275 prokMSA_id:73342 Actinobacillus lignieresii strain F 127 prokMSA_id:88305 Haemophilus ducreyi strain 35000HP section 2 of 6 of the com prokMSA_id:89152 Haemophilus ducreyi strain 35000HP section 3 of 6 of the com prokMSA_id:89543 Haemophilus ducreyi strain 35000HP section 1 of 6 of the com prokMSA_id:89921 Haemophilus ducreyi 35000HP complete genome NC_002940 prokMSA_id:90008 Haemophilus ducreyi strain 35000HP section 6 of 6 of the com prokMSA_id:91524 Bisgaard taxon 26 biovar 2 AY172728 prokMSA_id:91684 Bisgaard taxon 26 biovar 1 AY172727 2.28.3.26.18.9604 OTU 1 seq prokMSA_id:72830 Mannheimia sp. MCCM 00145 2.28.3.26.19 H.ACTINOMYCETEMCOMITANS_SUBGROUP 22 seqs 2.28.3.26.19.8308 OTU 1 seq prokMSA_id:9620 Haemophilus actinomycetemcomitans ATCC 33384 2.28.3.26.19.8312 OTU 1 seq prokMSA_id:9623 Actinobacillus succinogenes str. 130Z ATCC 55618 2.28.3.26.19.8409 OTU 1 seq prokMSA_id:86047 clone ABLCf1 2.28.3.26.19.8432 OTU 1 seq prokMSA_id:79654 clone csbio160231 2.28.3.26.19.8848 OTU 1 seq prokMSA_id:49556 str. 86355 2.28.3.26.19.9162 OTU 1 seq prokMSA_id:9619 CCUG 15572 2.28.3.26.19.9533 OTU 3 seqs prokMSA_id:17538 Haemophilus segnis prokMSA_id:54767 Haemophilus segnis prokMSA_id:76576 gamma clone S15A-MN19 2.28.3.26.19.9628 OTU 13 seqs prokMSA_id:81053 Histophilus somni 301-90 rrn AF549402 prokMSA_id:81079 Histophilus somni 8025 rrn AF549387 prokMSA_id:81142 Histophilus somni CCUG 46774 rrn prokMSA_id:81158 Histophilus somni 189-83 rrn prokMSA_id:81203 Histophilus somni CCUG 46773 rrn prokMSA_id:81519 Histophilus somni CCUG 18779 rrn prokMSA_id:81661 Histophilus somni CCUG 46771 rrn prokMSA_id:81866 Histophilus somni CCUG 46775 rrn prokMSA_id:81921 Histophilus somni CCUG 18778 rrn AF549396 prokMSA_id:82130 Histophilus somni CCUG 18780 rrn AF549392 prokMSA_id:82188 Histophilus somni 1062-89 rrn AF549405 prokMSA_id:82244 Histophilus somni CCUG 12839 rrn prokMSA_id:82382 Histophilus somni CCUG 36158 rrn 2.28.3.27 ENTERICS_AND_RELATIVES 887 seqs 2.28.3.27.1 BUCHNERA_SUBGROUP 44 seqs 2.28.3.27.1.8191 OTU 1 seq prokMSA_id:23181 Buchnera aphidicola Pterocomma populeum 2.28.3.27.1.8352 OTU 1 seq prokMSA_id:36645 Buchnera aphidicola Stomaphis quercus 2.28.3.27.1.8384 OTU 1 seq prokMSA_id:9642 Buchnera aphidicola 2.28.3.27.1.8387 OTU 1 seq prokMSA_id:33113 Buchnera aphidicola Thelaxes suberi 2.28.3.27.1.8395 OTU 1 seq prokMSA_id:9645 Buchnera aphidicola 2.28.3.27.1.8396 OTU 1 seq prokMSA_id:9646 Buchnera aphidicola 2.28.3.27.1.8421 OTU 6 seqs prokMSA_id:9638 Buchnera aphidicola. M63246 prokMSA_id:9639 Buchnera aphidicola prokMSA_id:9640 Buchnera aphidicola prokMSA_id:9641 Buchnera aphidicola prokMSA_id:64248 Buchnera aphidicola str. Sg Schizaphis graminum complete gen prokMSA_id:64367 Buchnera aphidicola str. Sg Schizaphis graminum section 25 o 2.28.3.27.1.8458 OTU 1 seq prokMSA_id:50183 Buchnera aphidicola Maculolachnus submacula 2.28.3.27.1.8464 OTU 1 seq prokMSA_id:54656 Secondary endosymbiont of Cacopsylla myrthi ; intergenic spa 2.28.3.27.1.8468 OTU 1 seq prokMSA_id:9643 Buchnera aphidicola 2.28.3.27.1.8506 OTU 1 seq prokMSA_id:9651 Buchnera aphidicola 2.28.3.27.1.8778 OTU 2 seqs prokMSA_id:9650 Buchnera aphidicola prokMSA_id:53693 Buchnera aphidicola Pemphigus populi 2.28.3.27.1.8864 OTU 8 seqs prokMSA_id:9644 symbiont of symbiont P of Acyrthosiphon pisum prokMSA_id:20966 Buchnera sp prokMSA_id:35977 Buchnera sp prokMSA_id:40619 Buchnera sp. AB033775 prokMSA_id:47707 Buchnera sp. APS complete genome NC_002528 prokMSA_id:51167 Buchnera sp. AB033774 prokMSA_id:52753 Buchnera sp prokMSA_id:70111 Buchnera sp. APS genomic complete segment 1/2 AP001118 2.28.3.27.1.8910 OTU 1 seq prokMSA_id:17473 Buchnera aphidicola Eriosoma lanuginosum 2.28.3.27.1.9014 OTU 6 seqs prokMSA_id:17372 Buchnera aphidicola Yamatocallis hirayamae isolate:#567 prim prokMSA_id:29368 Buchnera aphidicola Yamatocallis tokyoensis isolate:#566 pri prokMSA_id:35589 Buchnera aphidicola Yamatocallis tokyoensis isolate:#526 pri prokMSA_id:38168 Buchnera aphidicola Yamatocallis tokyoensis isolate:#207 pri prokMSA_id:40406 Buchnera aphidicola Yamatocallis tokyoensis isolate:#317 pri prokMSA_id:42294 Buchnera aphidicola Yamatocallis tokyoensis isolate:#525 pri 2.28.3.27.1.9156 OTU 1 seq prokMSA_id:41305 Buchnera aphidicola Lachnus roboris 2.28.3.27.1.9200 OTU 2 seqs prokMSA_id:9652 Buchnera aphidicola prokMSA_id:24034 Buchnera aphidicola Tetraneura caerulescens 2.28.3.27.1.9256 OTU 1 seq prokMSA_id:9648 Buchnera aphidicola 2.28.3.27.1.9260 OTU 1 seq prokMSA_id:9649 unnamed organism 2.28.3.27.1.9273 OTU 1 seq prokMSA_id:24924 Buchnera aphidicola Tuberolachnus salignus 2.28.3.27.1.9285 OTU 1 seq prokMSA_id:9653 Buchnera aphidicola 2.28.3.27.1.9309 OTU 1 seq prokMSA_id:67659 Buchnera sp 2.28.3.27.1.9504 OTU 1 seq prokMSA_id:23853 Buchnera aphidicola Panaphis juglandis 2.28.3.27.1.9527 OTU 1 seq prokMSA_id:34972 Buchnera aphidicola Hoplocallis pictus 2.28.3.27.1.9601 OTU 1 seq prokMSA_id:41602 Buchnera aphidicola Baizongia pistaciae 2.28.3.27.2 ESCHERICHIA_SUBGROUP 87 seqs 2.28.3.27.2.8244 OTU 2 seqs prokMSA_id:9727 Pantoea agglomerans str. TAC.III.94.1 prokMSA_id:9728 clone thrips6.12 2.28.3.27.2.8437 OTU 10 seqs prokMSA_id:9737 Edwardsiella tarda CDC 4411-68 prokMSA_id:10187 Edwardsiella tarda prokMSA_id:22744 Edwardsiella tarda strain:NE8003 prokMSA_id:25008 Edwardsiella ictaluri complete prokMSA_id:28203 Edwardsiella tarda strain:Su100 prokMSA_id:33398 Edwardsiella tarda strain:E381 prokMSA_id:34178 Edwardsiella ictaluri prokMSA_id:40779 Edwardsiella hoshinae prokMSA_id:70016 Edwardsiella sp. AC8640 prokMSA_id:74453 Edwardsiella tarda strain:NB8031 2.28.3.27.2.8672 OTU 1 seq prokMSA_id:63114 clone MB-A2-149 2.28.3.27.2.8742 OTU 1 seq prokMSA_id:9665 str. KN4 2.28.3.27.2.8783 OTU 1 seq prokMSA_id:9675 Alterococcus agarolyticus str. ADT3 2.28.3.27.2.8974 OTU 1 seq prokMSA_id:9711 Salmonella agona str. Sa1 2.28.3.27.2.9135 OTU 1 seq prokMSA_id:66560 amplicon H3 2.28.3.27.2.9358 OTU 66 seqs prokMSA_id:9659 Escherichia coli =rrsD . U18997 prokMSA_id:9660 Hafnia alvei prokMSA_id:9662 Shigella boydii prokMSA_id:9668 Salmonella paratyphi prokMSA_id:9669 Salmonella typhi str. St111 prokMSA_id:9670 Salmonella bovis subsp. morbificans str. Sbm1 prokMSA_id:9672 Escherichia coli str. PK3 =rrnB prokMSA_id:9673 Escherichia coli str. CgSC No. 189 =rrsA prokMSA_id:9676 Escherichia coli str. PK3 prokMSA_id:9678 Shigella flexneri str. Serovar 2a ATCC 29903 prokMSA_id:9679 Escherichia coli prokMSA_id:9680 Shigella sonnei prokMSA_id:9686 Shigella dysenteriae ATCC 13313 prokMSA_id:9691 Escherichia coli str. PK3 =rrnD prokMSA_id:9692 Escherichia coli str. PK3 =rrnG prokMSA_id:9693 Escherichia coli str. MC4100 prokMSA_id:9696 Escherichia coli str. PK3 =rrnC prokMSA_id:9698 Shigella sonnei prokMSA_id:9700 Shigella flexneri prokMSA_id:9701 Escherichia coli =rrnB operon. V00348 prokMSA_id:9702 Escherichia coli str. MG1655 =rrsC prokMSA_id:9704 Escherichia coli str. Seattle 1946 ATCC 25922 prokMSA_id:9706 Salmonella blockley str. Sb1 prokMSA_id:9707 Salmonella matopeni str. Sm1 prokMSA_id:9709 Salmonella paratyphi prokMSA_id:9710 Salmonella paratyphi prokMSA_id:9712 Salmonella bareilly str. Sb1 prokMSA_id:9713 Salmonella chingola str. Sch1 prokMSA_id:9714 Salmonella houten str. Sh1 prokMSA_id:9715 Salmonella waycross str. Swy1 prokMSA_id:9717 Escherichia coli str. MG1655 =rrsD . U00096 prokMSA_id:9719 Escherichia coli str. PK3 = prokMSA_id:9721 Shigella dysenteriae prokMSA_id:9741 Escherichia coli str. U 5/41 ATCC 11775 prokMSA_id:9751 Citrobacter koseri CDC 3613-63 prokMSA_id:9784 Klebsiella planticola JCM 7251 prokMSA_id:9785 Citrobacter koseri CDC 8132-86 prokMSA_id:24909 Escherichia coli K12 MG1655 section 296 of 400 of the comple prokMSA_id:28107 coding of Escherichia coli prokMSA_id:43594 clone p-4395-4Wa2 AF371931 prokMSA_id:46170 clone p-463-o3 prokMSA_id:46776 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section prokMSA_id:49240 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section prokMSA_id:51124 Escherichia coli O157:H7 complete genome section 18/20 AP002 prokMSA_id:55738 amplicon H2 prokMSA_id:55807 Shigella flexneri 2a str. 301 section 305 of 412 of the comp prokMSA_id:55834 Shigella flexneri 2a str. 301 section 243 of 412 of the comp prokMSA_id:58039 Shigella flexneri 2a str. 301 section 18 of 412 of the compl prokMSA_id:64392 Escherichia coli C2 AF403733 prokMSA_id:65406 Escherichia coli prokMSA_id:66566 amplicon H1 prokMSA_id:68951 Escherichia coli O157:H7 purH rrsE gltV rrlE rrfE yjaB metA prokMSA_id:68952 Escherichia coli O157:H7 clpB rrsG gltW rrlG rrfG kgtP genes prokMSA_id:68955 Escherichia coli O157:H7 murI rrsB gltT rrlB rrfB murB genes prokMSA_id:68956 Escherichia coli O157:H7 hemG rrsA ileT alaT rrlA rrfA mobB prokMSA_id:70983 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section prokMSA_id:71151 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section prokMSA_id:75507 Escherichia coli CFT073 section 15 of 18 of the complete gen prokMSA_id:76445 Escherichia coli CFT073 section 13 of 18 of the complete gen prokMSA_id:82658 Shigella flexneri 2a str. 2457T section 13 of 16 of the comp prokMSA_id:83034 Shigella flexneri 2a str. 2457T section 12 of 16 of the comp prokMSA_id:83296 Shigella flexneri 2a str. 2457T section 1 of 16 of the compl prokMSA_id:83655 Shigella flexneri 2a str. 2457T section 14 of 16 of the comp prokMSA_id:84714 Shigella flexneri 2a str. 2457T complete genome NC_004741 prokMSA_id:84906 Shigella flexneri 2a str. 2457T section 10 of 16 of the comp prokMSA_id:86213 clone ABLCf4 2.28.3.27.2.9496 OTU 3 seqs prokMSA_id:9695 Escherichia coli str. MG1655 =rrsG prokMSA_id:48448 Escherichia coli K12 MG1655 section 235 of 400 of the comple prokMSA_id:51002 Escherichia coli K12 complete genome NC_000913 2.28.3.27.2.9632 OTU 1 seq prokMSA_id:9732 unnamed organism 2.28.3.27.3 S.ENTERITIDIS_SUBGROUP 25 seqs 2.28.3.27.3.8567 OTU 1 seq prokMSA_id:44391 Enterobacter cloacae strain TU-7A 2.28.3.27.3.8886 OTU 22 seqs prokMSA_id:9756 Salmonella typhi str. Ty2 ATCC 19430 prokMSA_id:9760 Salmonella typhimurium str. E10 NCTC 8391 prokMSA_id:9773 Salmonella typhimurium str. SGSC1412 prokMSA_id:17230 Salmonella typhimurium LT2 section 14 of 220 of the complete prokMSA_id:26536 Salmonella typhimurium LT2 section 185 of 220 of the complet prokMSA_id:27007 Salmonella enterica serovar Typhi Salmonella typhi strain CT prokMSA_id:34689 Salmonella typhimurium LT2 section 124 of 220 of the complet prokMSA_id:37413 Salmonella enterica subsp. enterica prokMSA_id:40959 Salmonella enterica serovar Typhimurium prokMSA_id:41705 Salmonella typhimurium LT2 complete genome NC_003197 prokMSA_id:51836 Salmonella typhimurium LT2 section 197 of 220 of the complet prokMSA_id:52343 Salmonella typhimurium LT2 section 161 of 220 of the complet prokMSA_id:54877 Salmonella typhimurium LT2 section 199 of 220 of the complet prokMSA_id:54921 Salmonella typhimurium LT2 section 190 of 220 of the complet prokMSA_id:65338 Salmonella enterica serovar Typhi Salmonella typhi strain CT prokMSA_id:65339 Salmonella enterica serovar Typhi Salmonella typhi strain CT prokMSA_id:72996 Salmonella enterica serovar Montevideo prokMSA_id:74428 Salmonella enterica serovar Dublin prokMSA_id:74497 Salmonella typhimurium fragment STMD1 AF233324 prokMSA_id:84433 Salmonella enterica subsp. enterica serovar Typhi Ty2 sectio prokMSA_id:85807 Salmonella enterica subsp. enterica serovar Typhi Ty2 sectio prokMSA_id:86258 Salmonella enterica subsp. enterica serovar Typhi Ty2 comple 2.28.3.27.3.9391 OTU 1 seq prokMSA_id:49969 clone Car39fc 2.28.3.27.3.9646 OTU 1 seq prokMSA_id:9746 Enterobacter sakazakii str. Ct2 JCM 1233 2.28.3.27.4 PECTOBACTERIUM-ERWINIA_SUBGROUP 31 seqs 2.28.3.27.4.1 PCB.CAROTOVORUM_BETAVASCULORUM_SUBGROUP 17 seqs 2.28.3.27.4.1.8305 OTU 1 seq prokMSA_id:9789 Erwinia cacticida 2.28.3.27.4.1.8313 OTU 1 seq prokMSA_id:66727 Pectobacterium chrysanthemi strain 571 ; -23S intergenic spa 2.28.3.27.4.1.8319 OTU 1 seq prokMSA_id:9796 Leminorella grimontii DSM 5078 2.28.3.27.4.1.8350 OTU 1 seq prokMSA_id:9794 Pectobacterium carotovorum subsp. betavasculorum ATCC 43762 2.28.3.27.4.1.8558 OTU 3 seqs prokMSA_id:9798 Pectobacterium chrysanthemi ATCC 11663 prokMSA_id:9800 Pectobacterium chrysanthemi LMG 2804 prokMSA_id:43232 Erwinia chrysanthemi strain DSM 4610 2.28.3.27.4.1.8637 OTU 1 seq prokMSA_id:9802 Brenneria paradisiaca LMG 2542 2.28.3.27.4.1.8740 OTU 1 seq prokMSA_id:73843 Pectobacterium chrysanthemi strain 573 ; -23S intergenic spa 2.28.3.27.4.1.9651 OTU 8 seqs prokMSA_id:9790 Pectobacterium carotovorum subsp. atrosepticum LMG 2386 prokMSA_id:66741 Pectobacterium carotovorum subsp. atrosepticum strain 9205 ; prokMSA_id:66743 Pectobacterium carotovorum subsp. atrosepticum strain 9204 ; prokMSA_id:66744 Pectobacterium carotovorum subsp. atrosepticum strain 9201 ; prokMSA_id:66745 Pectobacterium carotovorum subsp. atrosepticum strain 558 ; prokMSA_id:66746 Pectobacterium carotovorum subsp. atrosepticum strain 196 ; prokMSA_id:66747 Pectobacterium carotovorum subsp. atrosepticum strain 31 ; - prokMSA_id:66749 Pectobacterium carotovorum subsp. atrosepticum strain GSPB 1 2.28.3.27.4.2 ER.AMYLOVORA_SUBGROUP 14 seqs 2.28.3.27.4.2.8379 OTU 2 seqs prokMSA_id:20321 Erwinia amylovora prokMSA_id:26973 Erwinia herbicola 2.28.3.27.4.2.9142 OTU 8 seqs prokMSA_id:9831 Erwinia amylovora ATCC 15580 prokMSA_id:9832 Erwinia amylovora DSM 30165 prokMSA_id:9833 Erwinia amylovora str. Ea1/79 prokMSA_id:47069 E.amylovora prokMSA_id:70191 Erwinia amylovora strain BC203 prokMSA_id:71495 Erwinia amylovora strain BC200 prokMSA_id:73119 Erwinia amylovora strain BC204 prokMSA_id:73185 Erwinia amylovora strain BC2280 2.28.3.27.4.2.9252 OTU 1 seq prokMSA_id:9821 Pantoea cedenensis str. A34 2.28.3.27.4.2.9345 OTU 3 seqs prokMSA_id:9834 Erwinia pyrifoliae str. Ep1/96 prokMSA_id:9835 Erwinia amylovora LMG 2024 prokMSA_id:69975 Erwinia amylovora strain BC199 2.28.3.27.5 CIT.BRAAKII_SUBGROUP 38 seqs 2.28.3.27.5.8554 OTU 21 seqs prokMSA_id:9860 Klebsiella oxytoca ATCC 13182 prokMSA_id:10112 Klebsiella sp. str. BEC441 prokMSA_id:10114 clone vadinBB56 prokMSA_id:10134 Kluyvera georgiana str. CDC enteric ATCC 51603 prokMSA_id:16953 Kluyvera ascorbata strain CDC 0556/74 prokMSA_id:17402 Klebsiella oxytoca prokMSA_id:24844 Kluyvera sp. IAL9555/98 prokMSA_id:26295 Klebsiella oxytoca prokMSA_id:35654 Kluyvera sp. IAL9557/98 prokMSA_id:44280 Kluyvera ascorbata AF008579 prokMSA_id:49488 Kluyvera ascorbata AF310219 prokMSA_id:51193 Kluyvera sp. IAL9558/98 prokMSA_id:58286 Klebsiella oxytoca strain ChDC OS46 prokMSA_id:65398 Serratia fonticola prokMSA_id:66564 amplicon J AJ487024 prokMSA_id:71543 Kluyvera ascorbata strain CDC 2064/78 AF176567 prokMSA_id:71835 Kluyvera ascorbata strain CDC 0648/74 AF176560 prokMSA_id:71892 Kluyvera ascorbata strain CDC 1058/74 AF176559 prokMSA_id:72250 Kluyvera ascorbata strain CDC 2066/78 prokMSA_id:80910 Enterobacter kobei strain CIP 105566 prokMSA_id:94216 Klebsiella sp. rennanqilfy18 AY363386 2.28.3.27.5.8629 OTU 1 seq prokMSA_id:9846 str. JSA 2.28.3.27.5.8632 OTU 1 seq prokMSA_id:9847 str. TSA 2.28.3.27.5.8885 OTU 4 seqs prokMSA_id:77662 gamma clone:APe2_17 prokMSA_id:77839 gamma clone:APe2_50 AB074626 prokMSA_id:85088 Morganella morganii strain:AP28 prokMSA_id:85614 Proteus vulgaris 2.28.3.27.5.9202 OTU 3 seqs prokMSA_id:52747 Activated sludge BC55 AF189697 prokMSA_id:66563 amplicon M prokMSA_id:85693 Morganella morganii strain:87411 2.28.3.27.5.9307 OTU 1 seq prokMSA_id:38855 Nitrogen-fixing CAN9B 2.28.3.27.5.9363 OTU 5 seqs prokMSA_id:9840 Citrobacter braakii CDC 080-58 prokMSA_id:9841 Citrobacter freundii CDC 621-64 prokMSA_id:9845 Citrobacter freundii DSM 30039 prokMSA_id:25734 Citrobacter sp. TSA-1 prokMSA_id:83212 Citrobacter freundii strain WA1 2.28.3.27.5.9594 OTU 2 seqs prokMSA_id:77628 gamma clone:APe4_2 AB074622 prokMSA_id:85645 Morganella morganii strain: ATCC35200 2.28.3.27.6 PCB.CYPRIPEDII_SUBGROUP 1 seq 2.28.3.27.6.8758 OTU 1 seq prokMSA_id:9861 Pectobacterium cypripedii ATCC 29267 2.28.3.27.7 PN.AGGLOMERANS_SUBGROUP 97 seqs 2.28.3.27.7.8282 OTU 1 seq prokMSA_id:63942 Secondary endosymbiont of Antonina pretiosa and 23S genes 2.28.3.27.7.8302 OTU 1 seq prokMSA_id:27032 Enterobacter sp. B96 2.28.3.27.7.8430 OTU 49 seqs prokMSA_id:9778 Salmonella bongori str. 66:z41:- CIP 8233 prokMSA_id:9779 Salmonella bongori str. JEO 4162. AF029226 prokMSA_id:9808 Pantoea agglomerans str. A18 prokMSA_id:9838 Erwinia mallotivora str. AM1 DSM 4565 prokMSA_id:9839 Erwinia psidii LMG 7034 prokMSA_id:9854 Pantoea endophytica str. A14 prokMSA_id:9865 Pantoea ananatis LMG 2665 prokMSA_id:9869 Pantoea ananatis ATCC 33244 prokMSA_id:9873 Pantoea ananas JCM 6986 prokMSA_id:9874 Pantoea ananatis ATCC 19321 prokMSA_id:9876 Pantoea agglomerans str. A12 prokMSA_id:9879 Pantoea agglomerans str. A23 prokMSA_id:9880 Pantoea agglomerans str. A26 prokMSA_id:9883 Pantoea agglomerans str. A53 prokMSA_id:9887 Pantoea agglomerans str. A62 prokMSA_id:9888 Pantoea agglomerans str. A63. AF130933 prokMSA_id:9891 Pantoea agglomerans str. A71 prokMSA_id:9897 Pantoea agglomerans str. A9. AF130961 prokMSA_id:9908 Pantoea agglomerans str. A123. AF130884 prokMSA_id:9909 Pantoea agglomerans str. A126 prokMSA_id:9912 Pantoea agglomerans str. A19. AF130898 prokMSA_id:9913 Pantoea agglomerans str. A21 prokMSA_id:9914 Pantoea agglomerans str. A27. AF130905 prokMSA_id:9918 Pantoea agglomerans str. A41. AF130913 prokMSA_id:9920 Pantoea agglomerans str. A46 prokMSA_id:9921 Pantoea agglomerans str. A47 prokMSA_id:9924 Pantoea agglomerans str. A56 prokMSA_id:9926 Pantoea agglomerans str. A59. AF130929 prokMSA_id:9927 Pantoea agglomerans str. A61 prokMSA_id:9931 Pantoea agglomerans str. A72 prokMSA_id:9933 Pantoea agglomerans str. A74 prokMSA_id:9940 unnamed organism prokMSA_id:9943 Enterobacter agglomerans LMG 2660. Z96083 prokMSA_id:10066 Tatumella ptyseos DSM 5000 prokMSA_id:10078 Pantoea endophytica str. A10. AF130889 prokMSA_id:10080 Pantoea endophytica str. A32. AF130908 prokMSA_id:10097 Pantoea agglomerans str. A15 prokMSA_id:10100 Pantoea endophytica str. A3. AF130956 prokMSA_id:10101 Pantoea A5 str. A5. AF130957 prokMSA_id:18430 Pantoea ananatis strain LMG 20106 prokMSA_id:18836 Pantoea sp. 'Cibuni media isolate 74' prokMSA_id:21990 Pantoea ananatis strain LMG 20104 prokMSA_id:33792 Enterobacter sp. IMD1260 prokMSA_id:47117 Pantoea ananatis strain LMG 20105 prokMSA_id:51158 Gamma MS-1 complete prokMSA_id:51850 Pantoea ananatis strain LMG 20103 prokMSA_id:67501 Pantoea agglomerans strain 732 AY092079 prokMSA_id:71227 Enterobacter agglomerans strain A49 prokMSA_id:97532 Pantoea agglomerans AY395010 2.28.3.27.7.8534 OTU 2 seqs prokMSA_id:9870 Pantoea oleae str. A66 prokMSA_id:9871 Pantoea oleae str. A36 2.28.3.27.7.8590 OTU 1 seq prokMSA_id:9947 Enterobacter pyrinus KCTC 2520 2.28.3.27.7.8693 OTU 35 seqs prokMSA_id:9875 Pantoea agglomerans ATCC 33261 prokMSA_id:9877 Pantoea agglomerans str. A16 prokMSA_id:9878 Pantoea agglomerans str. A22 prokMSA_id:9881 Pantoea agglomerans str. A28 prokMSA_id:9884 Pantoea agglomerans str. A54 prokMSA_id:9885 Pantoea agglomerans str. A57 prokMSA_id:9886 Pantoea agglomerans str. A60 prokMSA_id:9889 Pantoea agglomerans str. A65 prokMSA_id:9890 Pantoea agglomerans str. A67 prokMSA_id:9892 Pantoea agglomerans str. A77 prokMSA_id:9893 Pantoea agglomerans str. A79 prokMSA_id:9894 Pantoea agglomerans str. A81 prokMSA_id:9895 Pantoea agglomerans str. A91 prokMSA_id:9896 Pantoea agglomerans str. A92 prokMSA_id:9900 Enterobacter agglomerans LMG 2565 prokMSA_id:9906 Pantoea agglomerans ATCC 33243 prokMSA_id:9910 Pantoea agglomerans str. A20 prokMSA_id:9915 Pantoea agglomerans str. A29 prokMSA_id:9917 Pantoea agglomerans str. A40 prokMSA_id:9919 Pantoea agglomerans str. A45 prokMSA_id:9922 Pantoea agglomerans str. A48 prokMSA_id:9923 Pantoea agglomerans str. A55 prokMSA_id:9925 Pantoea agglomerans str. A58 prokMSA_id:9930 Pantoea agglomerans str. A70 prokMSA_id:9932 Pantoea agglomerans str. A73 prokMSA_id:9934 Pantoea agglomerans str. A80 prokMSA_id:9935 Pantoea agglomerans str. A83 prokMSA_id:9936 Pantoea agglomerans str. A84 prokMSA_id:9937 Pantoea agglomerans str. A87 prokMSA_id:9941 Pantoea agglomerans str. drh1 prokMSA_id:18938 L3-17C7 prokMSA_id:47393 Pantoea agglomerans strain DSM 3493 prokMSA_id:66729 Pantoea agglomerans strain LMG 2565 prokMSA_id:70540 Erwinia herbicola prokMSA_id:73786 Pantoea agglomerans strain NCTC9381T 2.28.3.27.7.8700 OTU 3 seqs prokMSA_id:79290 Baumannia cicadellinicola prokMSA_id:79577 Baumannia cicadellinicola prokMSA_id:80483 Baumannia cicadellinicola ; tRNA-Glu complete ; and 23S 2.28.3.27.7.8716 OTU 1 seq prokMSA_id:9868 unnamed organism 2.28.3.27.7.8811 OTU 1 seq prokMSA_id:32418 Gamma-symbiont of Antonina crawii 2.28.3.27.7.9302 OTU 3 seqs prokMSA_id:9944 Pantoea stewartii subsp. stewartii str. SS11 ATCC 8199 prokMSA_id:9946 Pantoea stewartii subsp. stewartii str. SS11 LMG 2715 prokMSA_id:66728 Pantoea stewartii subsp. stewartii strain GSPB 2626 2.28.3.27.8 WIGGLESWORTHIA_SYMBIONT_SUBGROUP 44 seqs 2.28.3.27.8.8207 OTU 2 seqs prokMSA_id:9948 endosymbiont of Glossina palpalis prokMSA_id:73925 Glossina palpalis P-endosymbiont 2.28.3.27.8.8236 OTU 1 seq prokMSA_id:63934 Secondary endosymbiont of Vryburgia amaryllidis and 23S gene 2.28.3.27.8.8343 OTU 1 seq prokMSA_id:85178 Candidatus Blochmannia festinatus isolate Cfest14 2.28.3.27.8.8393 OTU 1 seq prokMSA_id:9949 endosymbiont of Glossina tachinoides 2.28.3.27.8.8398 OTU 1 seq prokMSA_id:9951 Wigglesworthia glossinidia 2.28.3.27.8.8422 OTU 1 seq prokMSA_id:9965 unnamed organism 2.28.3.27.8.8478 OTU 1 seq prokMSA_id:48707 Endosymbiont of Camponotus balzani clone 12/1 2.28.3.27.8.8490 OTU 1 seq prokMSA_id:9977 Yersinia sp. str. KM16 2.28.3.27.8.8504 OTU 2 seqs prokMSA_id:63940 Secondary endosymbiont of Dysmicoccus brevipes and 23S genes prokMSA_id:63945 Secondary endosymbiont of Dysmicoccus neobrevipes and 23S ge 2.28.3.27.8.8586 OTU 2 seqs prokMSA_id:33643 Planococcus citri gamma- endosymbiont prokMSA_id:63935 Secondary endosymbiont of Planococcus citri and 23S genes 2.28.3.27.8.8603 OTU 1 seq prokMSA_id:63938 Secondary endosymbiont of Melanococcus albizziae and 23S gen 2.28.3.27.8.8607 OTU 1 seq prokMSA_id:63939 Secondary endosymbiont of Amonostherium lichtensioides and 2 2.28.3.27.8.8609 OTU 1 seq prokMSA_id:29373 Endosymbiont of Camponotus sericeiventris clone 6-6 2.28.3.27.8.8611 OTU 1 seq prokMSA_id:9950 endosymbiont of Glossina austeni 2.28.3.27.8.8624 OTU 1 seq prokMSA_id:63941 Secondary endosymbiont of Erium globosum and 23S genes 2.28.3.27.8.8652 OTU 1 seq prokMSA_id:74610 Endosymbiont of Camponotus socius clone 11/3 2.28.3.27.8.8683 OTU 1 seq prokMSA_id:9987 str. SFr 2.28.3.27.8.8701 OTU 1 seq prokMSA_id:52942 Secondary endosymbiont of Blastopsylla occidentalis ; interg 2.28.3.27.8.8801 OTU 4 seqs prokMSA_id:9953 symbiont of Camponotus herculeanus prokMSA_id:40380 Camponotus herculeanus endosymbiont strain USA prokMSA_id:60411 Candidatus Blochmannia pennsylvanicus prokMSA_id:85963 Candidatus Blochmannia pennsylvanicus isolate Cpenn00 2.28.3.27.8.8820 OTU 1 seq prokMSA_id:9962 Wigglesworthia glossinidia 2.28.3.27.8.8866 OTU 4 seqs prokMSA_id:9961 symbiont of Camponotus rufipes prokMSA_id:9974 symbiont of Camponotus floridanus prokMSA_id:21535 Endosymbiont of Camponotus rufipes clone 13/5 prokMSA_id:91372 Candidatus Blochmannia floridanus complete genome NC_005061 2.28.3.27.8.8954 OTU 7 seqs prokMSA_id:9976 symbiont of secondary endosymbiont of Glossina pallidipes ts prokMSA_id:9981 unnamed organism. U64869 prokMSA_id:9982 unnamed organism prokMSA_id:9983 unnamed organism prokMSA_id:9984 unnamed organism prokMSA_id:95777 Sodalis glossinidius -23S operon complete AF548135 prokMSA_id:97799 Sodalis glossinidius -23S rrnB operon complete AF548136 2.28.3.27.8.9047 OTU 1 seq prokMSA_id:53447 Secondary endosymbiont of Calophya schini ; intergenic space 2.28.3.27.8.9293 OTU 2 seqs prokMSA_id:20928 Endosymbiont of Camponotus pennsylvanicus clone 14/7 prokMSA_id:42640 Endosymbiont of Camponotus castaneus clone 8/1 2.28.3.27.8.9290 OTU 2 seqs prokMSA_id:79106 Baumannia cicadellinicola prokMSA_id:79588 Baumannia cicadellinicola 2.28.3.27.8.9420 OTU 1 seq prokMSA_id:39049 Endosymbiont of Camponotus abdominalis clone 4-2 2.28.3.27.8.9543 OTU 1 seq prokMSA_id:27576 Secondary endosymbiont of Psylla ?floccosa 2.28.3.27.9 PCB.CAROTOVORUM_CAROTOVORUM_SUBGROUP 19 seqs 2.28.3.27.9.8934 OTU 16 seqs prokMSA_id:9792 Pectobacterium carotovorum subsp. betavasculorum LMG 2466 prokMSA_id:9988 Pectobacterium carotovorum subsp. carotovorum ATCC 15713 prokMSA_id:9989 Pectobacterium carotovorum subsp. carotovorum LMG 2404 prokMSA_id:9991 Pectobacterium carotovorum subsp. odoriferum LMG 17566 prokMSA_id:23248 Erwinia carotovora strain DSM 30168 prokMSA_id:66723 Pectobacterium chrysanthemi strain GSPB 1406 ; -23S intergen prokMSA_id:66736 Pectobacterium carotovorum subsp. carotovorum strain E161 ; prokMSA_id:66737 Pectobacterium carotovorum subsp. carotovorum strain E155 ; prokMSA_id:66738 Pectobacterium carotovorum subsp. carotovorum strain GSPB 28 prokMSA_id:66739 Pectobacterium carotovorum subsp. carotovorum strain 441 ; - prokMSA_id:66740 Pectobacterium carotovorum subsp. carotovorum strain 21 ; -2 prokMSA_id:70490 Pectobacterium carotovorum subsp. atrosepticum strain E1 ; - prokMSA_id:72751 Pectobacterium chrysanthemi strain GSPB 413 prokMSA_id:73789 Pectobacterium carotovorum subsp. odoriferum strain 1880 prokMSA_id:73905 Pectobacterium carotovorum subsp. betavasculorum strain 29 ; prokMSA_id:74117 Pectobacterium carotovorum subsp. odoriferum strain 1878 2.28.3.27.9.9266 OTU 1 seq prokMSA_id:9994 str. BEV 2.28.3.27.9.9268 OTU 1 seq prokMSA_id:9995 unnamed organism 2.28.3.27.9.9406 OTU 1 seq prokMSA_id:38096 Q3-24C22 2.28.3.27.10 SER.MARCESCENS_SUBGROUP 13 seqs 2.28.3.27.10.8326 OTU 1 seq prokMSA_id:10024 str. TIHP368-27 2.28.3.27.10.8467 OTU 7 seqs prokMSA_id:10035 Serratia marcescens prokMSA_id:10037 Serratia marcescens prokMSA_id:31283 Serratia marcescens isolate HO2-A prokMSA_id:41097 Serratia marcescens IRBG 501 prokMSA_id:42000 Serratia marcescens prokMSA_id:59692 Pseudomonas fluorescens prokMSA_id:63599 Serratia marcescens strain AU736 2.28.3.27.10.8599 OTU 2 seqs prokMSA_id:9998 str. CA prokMSA_id:10002 str. IN 2.28.3.27.10.8690 OTU 1 seq prokMSA_id:85525 Serratia marcescens 2.28.3.27.10.9106 OTU 1 seq prokMSA_id:10001 str. DP 2.28.3.27.10.9348 OTU 1 seq prokMSA_id:52626 Serratia marcescens isolate H170 2.28.3.27.11 KLEBSIELLA_SUBGROUP 189 seqs 2.28.3.27.11.2 ENB.ASBURIAE_SUBGROUP 149 seqs 2.28.3.27.11.2.8505 OTU 14 seqs prokMSA_id:10050 Buttiauxella agrestis DSM 4586 prokMSA_id:10051 Buttiauxella brennerae DSM 9396 prokMSA_id:10052 Buttiauxella ferragutiae DSM 9390 prokMSA_id:10053 Buttiauxella gaviniae DSM 9393 prokMSA_id:10054 Buttiauxella izardii DSM 9397 prokMSA_id:10055 Buttiauxella noackiae DSM 9401 prokMSA_id:10056 Buttiauxella warmboldiae DSM 9404 prokMSA_id:45264 Pantoea sp. 57917 prokMSA_id:69815 Buttiauxella agrestis strain S3/3-203 prokMSA_id:69978 Buttiauxella noackiae strain BR 626 prokMSA_id:70049 Buttiauxella noackiae strain NSW11T ATCC 51607T prokMSA_id:73164 Buttiauxella agrestis strain CDC 1176-81T ATCC 33320T prokMSA_id:73465 Pantoea sp. 57916 prokMSA_id:74207 Buttiauxella sp. LBV 449 2.28.3.27.11.2.8528 OTU 7 seqs prokMSA_id:10077 Enterobacter cloacae str. Nr. 3 prokMSA_id:34251 soil clone 431-1 prokMSA_id:38852 soil clone 1389-1 prokMSA_id:53373 soil clone 336-1 prokMSA_id:56056 gamma clone ccslm2118 prokMSA_id:70171 soil clone 624-1 prokMSA_id:73497 soil clone 816-1 2.28.3.27.11.2.8530 OTU 1 seq prokMSA_id:72866 Enterobacteriaceae CF01Ent-1 isolate CF01Ent-1 2.28.3.27.11.2.8640 OTU 104 seqs prokMSA_id:9667 Salmonella enteritidis str. SE22 prokMSA_id:9708 Salmonella weltevreden str. sw1. U90317 prokMSA_id:9753 Salmonella sp. str. ATCC 9712 prokMSA_id:9769 Salmonella typhimurium ATCC 13311 prokMSA_id:9772 Salmonella sp prokMSA_id:9781 Salmonella sofia prokMSA_id:9842 Citrobacter 'genomospecies 10' CDC 4693-86 prokMSA_id:9843 Citrobacter 'genomospecies 11' CDC 2970-59 prokMSA_id:9852 Citrobacter werkmanii CDC 0876-58 prokMSA_id:9853 Pantoea endophytica str. A1. AF130888 prokMSA_id:9857 Enterobacter gergoviae JCM 1234 . AB004748 prokMSA_id:10006 Serratia marcescens DSM 30121 prokMSA_id:10032 Serratia marcescens prokMSA_id:10033 Serratia marcescens prokMSA_id:10034 Serratia marcescens prokMSA_id:10036 Serratia marcescens prokMSA_id:10039 Enterobacter aerogenes JCM 1235 prokMSA_id:10041 Kluyvera cochleae str. S3/1-49 ATCC 51609 . AF047187 prokMSA_id:10064 Enterobacter asburiae str. 1497-78 JCM 6051 prokMSA_id:10079 Pantoea endophytica str. A13 prokMSA_id:10081 Pantoea endophytica str. A42 prokMSA_id:10082 Pantoea endophytica str. A6 prokMSA_id:10095 Enterobacter cancerogenus LMG 2693 prokMSA_id:10102 Pantoea agglomerans str. A8 prokMSA_id:10103 Pantoea sp. str. R8 prokMSA_id:10124 Klebsiella terrigena ATCC 33257 prokMSA_id:10125 Klebsiella terrigena str. SW4 prokMSA_id:10135 Serratia liquefaciens JCM 1245 . AB004752 prokMSA_id:10140 Enterobacter dissolvens LMG 2683 prokMSA_id:10143 Klebsiella pneumoniae. X87276 prokMSA_id:10144 Klebsiella pneumoniae DSM 30102. X93214 prokMSA_id:16603 Serratia marcescens isolate ZO1-A AJ296310 prokMSA_id:20073 sheep mite Caithness 8 prokMSA_id:20148 Klebsiella pneumoniae subsp. ozaenae AF130982 prokMSA_id:20554 Escherichia coli O157:H7 EDL933 genome contig 1 of 3 section prokMSA_id:20981 sheep mite Caithness 72 prokMSA_id:21665 sheep mite Welshpool 31 prokMSA_id:21806 Klebsiella terrigena strain ATCC 33257T AF129442 prokMSA_id:27869 sheep mite Caithness 25 AF289500 prokMSA_id:29399 sheep mite Caithness 32 AF289501 prokMSA_id:30637 Serratia marcescens isolate CPO14CU AJ296308 prokMSA_id:32480 Klebsiella pneumoniae subsp. rhinoscleromatis AF130983 prokMSA_id:35445 sheep mite Caithness 23 AF289499 prokMSA_id:35882 sheep mite Caithness 11 prokMSA_id:37558 Klebsiella pneumoniae strain DM-5 AF390084 prokMSA_id:38659 Enterobacter aerogenes complete prokMSA_id:43455 Serratia marcescens isolate HO1-A prokMSA_id:43889 Escherichia coli O157:H7 complete genome section 1/20 AP0025 prokMSA_id:46431 Serratia marcescens isolate RO1-A AJ302156 prokMSA_id:46459 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section prokMSA_id:46645 Escherichia coli O157:H7 complete genome section 13/20 AP002 prokMSA_id:48916 Escherichia coli O157:H7 complete genome AE005174 prokMSA_id:49069 Escherichia coli O157:H7 EDL933 complete genome NC_002655 prokMSA_id:49498 Pantoea agglomerans AF321020 prokMSA_id:49908 Escherichia coli O157:H7 complete genome NC_002695 prokMSA_id:50412 Enterobacter sp. 16-31 AF126103 prokMSA_id:51811 Leclercia adecarboxylata strain WG 184 prokMSA_id:51865 Serratia marcescens isolate 90-166 AJ296306 prokMSA_id:53771 Enterobacter sp. 3-45 AF126102 prokMSA_id:54081 Serratia marcescens isolate WO1-A AJ296309 prokMSA_id:55739 Escherichia coli O157:H7 complete genome section 15/20 AP002 prokMSA_id:56115 Serratia marcescens strain AU1209 prokMSA_id:56472 Serratia marcescens strain AU1388 AY043389 prokMSA_id:56537 Enterobacteriaceae PH29 AF513468 prokMSA_id:60328 clone Phe50 prokMSA_id:60369 Enterobacteriaceae PH31 AF513469 prokMSA_id:61809 gamma clone CLs91 prokMSA_id:61810 gamma clone CLs85 prokMSA_id:61815 gamma clone CLs114 prokMSA_id:61827 gamma clone CLi53 prokMSA_id:62411 gamma clone FTL260 prokMSA_id:63596 Klebsiella pneumoniae AY043391 prokMSA_id:63597 Morganella morganii AY043390 prokMSA_id:63598 Serratia marcescens strain AU664 AY043385 prokMSA_id:64270 Pantoea sp. P102 strain P102 prokMSA_id:64272 Klebsiella pneumoniae strain 342 AF394537 prokMSA_id:65355 Cedecea neteri prokMSA_id:65407 Serratia marcescens prokMSA_id:66579 Escherichia coli isolate AK108 AY098487 prokMSA_id:68953 Escherichia coli O157:H7 yaeD rrsH ileV alaV rrlH rrfH aspU prokMSA_id:68954 Escherichia coli O157:H7 yrdA rrsD ileU alaU rrlD rrfD thrV prokMSA_id:70434 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section prokMSA_id:70560 Enterobacter cloacae strain ATCC13047T AJ251469 prokMSA_id:71282 Enterobacter sp. 253a AY082447 prokMSA_id:71494 Leclercia adecarboxylata strain LBV 449 prokMSA_id:71762 Pantoea sp. P101 strain P101 prokMSA_id:74266 Pantoea sp. YSS/2001-2 prokMSA_id:75525 Escherichia coli CFT073 section 10 of 18 of the complete gen prokMSA_id:77919 Enterobacter sp. TUT1014 prokMSA_id:80575 Enterobacter hormaechei strain CIP 103441 prokMSA_id:82917 Cedecea davisae DSM 4568 prokMSA_id:84051 Enterobacter sp. 2002-2301161 prokMSA_id:84367 Serratia marcescens prokMSA_id:85034 Serratia marcescens strain N9 AF494202 prokMSA_id:85372 Enterobacter aerogenes prokMSA_id:90603 Klebsiella oxytoca strain NG14 AY302437 prokMSA_id:91042 G2 AY345398 prokMSA_id:91567 clone LWSR-26 AY345541 prokMSA_id:91628 clone GLB-2 AY345576 prokMSA_id:91733 clone GLS5 AY345581 prokMSA_id:92667 Serratia marcescens strain:HokM AB117954 prokMSA_id:93671 Core-2 AB111105 prokMSA_id:94946 Klebsiella pneumoniae AY369139 prokMSA_id:97959 Pantoea sp. NAB7 AY395011 2.28.3.27.11.2.8936 OTU 6 seqs prokMSA_id:10108 Klebsiella oxytoca JCM 1665 prokMSA_id:10109 Klebsiella oxytoca str. 5725y prokMSA_id:10110 Klebsiella oxytoca str. 5884 prokMSA_id:26469 Klebsiella oxytoca prokMSA_id:58294 Klebsiella oxytoca strain ChDC OS31 prokMSA_id:71572 Klebsiella oxytoca 2.28.3.27.11.2.9060 OTU 9 seqs prokMSA_id:10075 Pantoea agglomerans str. ATTC27155 JCM 1236 prokMSA_id:10087 Enterobacter cloacae str. drh3 prokMSA_id:10088 Pantoea agglomerans str. 86350 prokMSA_id:27763 Pantoea agglomerans prokMSA_id:40056 clone p-2172-s959-3 prokMSA_id:50084 clone p-2009-s959-5 prokMSA_id:60334 clone Phe11 prokMSA_id:60351 clone Caf17 prokMSA_id:72445 sheep mite Welshpool 24 2.28.3.27.11.2.9274 OTU 1 seq prokMSA_id:86519 Enterobacter sp. CC1 2.28.3.27.11.2.9283 OTU 1 seq prokMSA_id:10085 str. SS-Unknown-1129 2.28.3.27.11.2.9361 OTU 4 seqs prokMSA_id:10048 Enterobacter amnigenus JCM 1237 prokMSA_id:10092 Enterobacter intermedius str. Gavini E 86 JCM 1238 prokMSA_id:26797 gamma clone BIci26 prokMSA_id:91327 clone K2-30-20 AY344378 2.28.3.27.11.2.9368 OTU 1 seq prokMSA_id:10115 Pragia fontium DSM 5563 2.28.3.27.11.2.9390 OTU 1 seq prokMSA_id:10042 Enterobacter nimipressuralis LMG 10245 2.28.3.27.11.3 K.PLANTICOLA_SUBGROUP 17 seqs 2.28.3.27.11.3.8251 OTU 1 seq prokMSA_id:24848 Nitrogen-fixing CANF3 2.28.3.27.11.3.8529 OTU 8 seqs prokMSA_id:10126 Klebsiella planticola ATCC 33531 prokMSA_id:10127 Klebsiella planticola DSM 3069 prokMSA_id:10128 Klebsiella ornithinolytica str. 590681 prokMSA_id:10132 Klebsiella Cd-1 str. Cd-1 prokMSA_id:35041 Klebsiella ornithinolytica prokMSA_id:49258 Klebsiella ornithinolytica prokMSA_id:73261 Klebsiella planticola prokMSA_id:74012 Klebsiella ornithinolytica strain JCM6096T 2.28.3.27.11.3.8627 OTU 1 seq prokMSA_id:63943 Secondary endosymbiont of Australicoccus grevilleae and 23S 2.28.3.27.11.3.8770 OTU 1 seq prokMSA_id:66319 Br-35 2.28.3.27.11.3.8890 OTU 6 seqs prokMSA_id:10129 Klebsiella planticola str. 7444 prokMSA_id:10130 Klebsiella ornithinolytica str. FSK9555 prokMSA_id:10131 Klebsiella planticola str. DR3 prokMSA_id:84971 Raoultella planticola strain:4131 prokMSA_id:86319 Raoultella planticola strain:ATCC 43176 prokMSA_id:86680 Raoultella planticola strain:8433 2.28.3.27.11.4 K.PNEUMONIAE_SUBGROUP 23 seqs 2.28.3.27.11.4.8362 OTU 10 seqs prokMSA_id:10139 Calymmatobacterium granulomatis str. KH 22 prokMSA_id:10155 Klebsiella pneumoniae. AF076033 prokMSA_id:10159 Klebsiella pneumoniae subsp. ozaenae str. I436. AF009170 prokMSA_id:44635 Klebsiella pneumoniae prokMSA_id:71955 Klebsiella pneumoniae subsp. pneumoniae AF228918 prokMSA_id:73579 Klebsiella singaporensis LX3 prokMSA_id:86686 Klebsiella milletis prokMSA_id:87560 Klebsiella pneumoniae strain 542 AY291290 prokMSA_id:89119 Klebsiella pneumoniae isolate 521 AY292865 prokMSA_id:89511 Klebsiella pneumoniae isolate 1053 AY292866 2.28.3.27.11.4.8510 OTU 11 seqs prokMSA_id:10142 Klebsiella pneumoniae subsp. ozaenae ATCC 11296 prokMSA_id:10148 Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 prokMSA_id:10149 Klebsiella pneumoniae str. Klebs313 prokMSA_id:10151 Klebsiella pneumoniae subsp. pneumoniae ATCC 13883 prokMSA_id:10153 Klebsiella pneumoniae subsp. pneumoniae JCM 1662 prokMSA_id:27939 Klebsiella pneumoniae strain DSM 30104 prokMSA_id:29091 Klebsiella sp. KG1 prokMSA_id:63980 Klebsiella pneumoniae prokMSA_id:71139 Klebsiella pneumoniae subsp. ozaenae prokMSA_id:72626 Klebsiella pneumoniae prokMSA_id:73274 Klebsiella pneumoniae 2.28.3.27.11.4.8773 OTU 1 seq prokMSA_id:43351 Klebsiella pneumoniae 2.28.3.27.11.4.9341 OTU 1 seq prokMSA_id:37741 Nitrogen-fixing CC262C 2.28.3.27.12 SER.FICARIA_SUBGROUP 45 seqs 2.28.3.27.12.8286 OTU 1 seq prokMSA_id:63944 Secondary endosymbiont of Cyphonococcus alpinus and 23S gene 2.28.3.27.12.8388 OTU 7 seqs prokMSA_id:10162 symbiont of symbiont S of Acyrthosiphon pisum prokMSA_id:26800 Secondary symbiont of Acyrthosiphon pisum prokMSA_id:27697 Secondary symbiont of Acyrthosiphon pisum prokMSA_id:31810 Secondary symbiont -R of Acyrthosiphon pisum rrs prokMSA_id:33363 Secondary symbiont of Acyrthosiphon pisum prokMSA_id:37966 Secondary symbiont -R of Uroleucon caligatum rrs prokMSA_id:82660 Secondary symbiont -R of Acyrthosiphon pisum clone Wisconsin 2.28.3.27.12.8711 OTU 2 seqs prokMSA_id:10171 Serratia odorifera DSM 4582 prokMSA_id:43863 Serratia odorifera DSM 4582 2.28.3.27.12.8712 OTU 11 seqs prokMSA_id:10170 Serratia grimesii DSM 30063 prokMSA_id:10173 Serratia proteamaculans DSM 4543 prokMSA_id:10174 Serratia proteamaculans DSM 4597 prokMSA_id:24212 Serratia grimesii LMG 7883 prokMSA_id:24791 Serratia proteamaculans quinovora strain CP6g prokMSA_id:27899 Serratia liquefaciens strain CIP 103238T prokMSA_id:30445 Enterobacteriaceae sp. JM983 isolate JM983 prokMSA_id:47869 Serratia proteamaculans quinovora strain CP6d prokMSA_id:64290 Serratia proteamaculans prokMSA_id:73291 Serratia proteamaculans subsp. quinovora LMG 7887 prokMSA_id:83887 Serratia liquefaciens 2.28.3.27.12.8739 OTU 8 seqs prokMSA_id:10163 Serratia ficaria JCM 1241 prokMSA_id:10167 Serratia entomophila DSM 12358 prokMSA_id:10168 Serratia ficaria DSM 4569 prokMSA_id:10172 Serratia plymuthica DSM 4540. AJ233433 prokMSA_id:20233 Serratia plymuthica DSM 4540 prokMSA_id:30328 Serratia sp. White strain White AJ417371 prokMSA_id:30929 Serratia ficaria strain NCTC 12148 prokMSA_id:45752 Serratia plymuthica strain RK 2.28.3.27.12.8892 OTU 8 seqs prokMSA_id:10181 Aranicola proteolyticus prokMSA_id:20361 clone 228 AJ310680 prokMSA_id:30517 clone 244 AJ310681 prokMSA_id:30806 Serratia proteamaculans quinovora strain CP6f prokMSA_id:33909 Serratia proteamaculans quinovora strain PC1 AJ279053 prokMSA_id:41789 clone 231 prokMSA_id:52641 Serratia proteamaculans quinovora strain CP6a prokMSA_id:85224 Serratia liquefaciens 2.28.3.27.12.9151 OTU 2 seqs prokMSA_id:53341 clone Car36rc prokMSA_id:54261 clone Car35rc 2.28.3.27.12.9196 OTU 1 seq prokMSA_id:10180 Aquamonas haywardensis str. EG121 CDC 2404-94 2.28.3.27.12.9417 OTU 5 seqs prokMSA_id:10169 Serratia fonticola DSM 4576 prokMSA_id:25598 Serratia proteamaculans quinovora strain Ox1a AJ279052 prokMSA_id:33276 Serratia fonticola strain IB4 prokMSA_id:34707 Serratia fonticola LMG 7882 prokMSA_id:82090 Serratia fonticola UTAD54 2.28.3.27.13 XENORHABDUS_SUBGROUP 166 seqs 2.28.3.27.13.1 BEMISIA_SYMBIONT 24 seqs 2.28.3.27.13.1.9325 OTU 24 seqs prokMSA_id:10185 symbiont of Bemisia tabaci sweet potato whitefly prokMSA_id:17365 Secondary endosymbiont of Bemisia tabaci clone CALA prokMSA_id:19360 Secondary symbiont -T of Uroleucon ambrosiae isolate T- rrs prokMSA_id:20242 Secondary endosymbiont of Bemisia tabaci clone AZB prokMSA_id:24843 Secondary symbiont -T of Uroleucon rudbeckiae rrs prokMSA_id:28464 Secondary endosymbiont of Bemisia tabaci clone JATPR prokMSA_id:35772 Secondary symbiont -T of Uroleucon ambrosiae isolate T- rrs prokMSA_id:36537 Secondary endosymbiont of Bemisia tabaci clone TANZ3-1 prokMSA_id:42775 gamma DAC-2000 prokMSA_id:43876 Secondary endosymbiont of Bemisia tabaci clone ISR5 prokMSA_id:50332 Secondary endosymbiont of Bemisia tabaci clone MEX4 prokMSA_id:50515 Secondary symbiont -T of Acyrthosiphon pisum rrs prokMSA_id:51366 Secondary endosymbiont of Bemisia tabaci clone AZA prokMSA_id:51838 Secondary endosymbiont of Bemisia tabaci clone CULMX prokMSA_id:83342 Secondary symbiont -T of Uroleucon pieloui prokMSA_id:83831 Secondary symbiont -T of Aphis craccivora prokMSA_id:83862 Secondary symbiont -T of Uroleucon nigrotuberculatum prokMSA_id:84832 Secondary symbiont -T of Pemphigus spyrothecae prokMSA_id:84895 Secondary symbiont -T of Macrosiphum euphorbiae prokMSA_id:84922 Secondary symbiont -T of Acyrthosiphon pisum prokMSA_id:85003 Secondary symbiont -T of Periphyllus bulgaricus prokMSA_id:85992 Secondary symbiont -T of Uroleucon reynoldense prokMSA_id:86586 Secondary symbiont -T of Cacopsylla pyri prokMSA_id:90074 Secondary endosymbiont of Bemisia tabaci ; tRNA-Glu complete 2.28.3.27.13.2 SER.RUBIDAEA_SUBGROUP 4 seqs 2.28.3.27.13.2.8630 OTU 3 seqs prokMSA_id:10186 Serratia rubidaea str. Ewing 2199- JCM 1240 prokMSA_id:10189 Serratia rubidaea str. Ewing 2199- DSM 4480 prokMSA_id:10192 Serratia rubidaea str. IEGN11. AB030922 2.28.3.27.13.2.8775 OTU 1 seq prokMSA_id:10194 str. TIHP368-30 2.28.3.27.13.3 BN.RUBRIFACIENS_SUBGROUP 9 seqs 2.28.3.27.13.3.8631 OTU 1 seq prokMSA_id:63937 Secondary endosymbiont of Planococcus ficus and 23S genes 2.28.3.27.13.3.8842 OTU 3 seqs prokMSA_id:10197 Brenneria rubrifaciens ATCC 29291 prokMSA_id:10198 Brenneria rubrifaciens LMG 2709 prokMSA_id:51229 Erwinia rubrifaciens strain DSM 4483 2.28.3.27.13.3.9082 OTU 3 seqs prokMSA_id:10196 Brenneria quercina LMG 2724 prokMSA_id:10199 Brenneria salicis ATCC 15712 prokMSA_id:10200 Brenneria quercina DSM 4561 2.28.3.27.13.3.9475 OTU 2 seqs prokMSA_id:10201 Brenneria salicis LMG 2698 prokMSA_id:46931 Erwinia salicis strain DSM 30166 2.28.3.27.13.4 P.VULGARIS_SUBGROUP 32 seqs 2.28.3.27.13.4.8165 OTU 1 seq prokMSA_id:10211 str. OR 2.28.3.27.13.4.8182 OTU 18 seqs prokMSA_id:10205 Proteus vulgaris IFAM 1731 prokMSA_id:10206 Proteus vulgaris DSM 30118 prokMSA_id:18414 Proteus vulgaris strain CIP103181T prokMSA_id:19524 Proteus mirabilis strain CIP103181T prokMSA_id:19687 Proteus mirabilis prokMSA_id:27167 Proteus mirabilis prokMSA_id:37204 Proteus vulgaris prokMSA_id:75554 Swine manure RT-4D prokMSA_id:75572 Swine manure RT-3B prokMSA_id:75783 Swine manure RT-2B prokMSA_id:76116 Swine manure RT-4A prokMSA_id:76139 Swine manure RT-2C prokMSA_id:76398 Swine manure RT-13A prokMSA_id:76558 Swine manure RT-2D prokMSA_id:76689 Swine manure RT-10A prokMSA_id:76776 Swine manure RT-4C prokMSA_id:76918 Swine manure RT-6A prokMSA_id:77224 Swine manure RT-3C 2.28.3.27.13.4.8217 OTU 1 seq prokMSA_id:21132 from Aleurodicus dugesii 2.28.3.27.13.4.8283 OTU 1 seq prokMSA_id:54964 Secondary endosymbiont of Heteropsylla texana ; intergenic s 2.28.3.27.13.4.8450 OTU 1 seq prokMSA_id:40697 Morganella morganii 2.28.3.27.13.4.8968 OTU 1 seq prokMSA_id:82772 Morganella morganii 2.28.3.27.13.4.9385 OTU 7 seqs prokMSA_id:33418 Secondary endosymbiont of Bemisia tabaci clone UG26 prokMSA_id:85281 Symbiont of Myzocallis sp prokMSA_id:86038 Symbiont of Wahlgreniella nervata AY136168 prokMSA_id:88430 Arsenophonus endosymbiont of Australiococcus greville ; tRNA prokMSA_id:88445 Arsenophonus endosymbiont of Acanthaleyrodes styraci ; tRNA- prokMSA_id:88455 Arsenophonus endosymbiont of Neomaskellia andropogonis ; tRN prokMSA_id:89143 Arsenophonus endosymbiont of Aleuroplatus gelatinosus ; tRNA 2.28.3.27.13.4.9600 OTU 1 seq prokMSA_id:10203 Phlomobacter fragariae str. france 2.28.3.27.13.4.9603 OTU 1 seq prokMSA_id:10204 unnamed organism 2.28.3.27.13.5 XEN.NEMATOPHILUS_SUBGROUP 97 seqs 2.28.3.27.13.5.8173 OTU 5 seqs prokMSA_id:10217 Photorhabdus luminescens str. Tn-5*2 prokMSA_id:10225 Photorhabdus luminescens ATCC 43949 prokMSA_id:10226 Photorhabdus luminescens ATCC 43952 prokMSA_id:10227 Photorhabdus luminescens ATCC 43951 prokMSA_id:10228 Photorhabdus luminescens ATCC 43950 2.28.3.27.13.5.8225 OTU 2 seqs prokMSA_id:84257 Symbiont of Pemphigus populi prokMSA_id:84718 Symbiont of Tetraneura ulmi 2.28.3.27.13.5.8300 OTU 1 seq prokMSA_id:10299 Xenorhabdus beddingii DSM 4764 2.28.3.27.13.5.8642 OTU 26 seqs prokMSA_id:9787 Pectobacterium carotovorum subsp. wasabiae str. SR 91 ATCC 4 prokMSA_id:9788 Erwinia carotovora subsp. wasabiae ICMP 9121 prokMSA_id:10239 Xenorhabdus nematophilus DSM 3370 prokMSA_id:10240 Xenorhabdus nematophilus str. N2-4 prokMSA_id:10241 Xenorhabdus nematophilus str. RIOBRAVIS prokMSA_id:10298 Xenorhabdus beddingii DSM 4764 prokMSA_id:10300 Xenorhabdus nematophilus ATCC 19061 prokMSA_id:61196 Dickeya dieffenbachiae AF520712 prokMSA_id:61197 Dickeya zeae strain CFBP 2052 AF520711 prokMSA_id:61200 Erwinia chrysanthemi strain CFBP 1270 AF520709 prokMSA_id:61202 Dickeya dadantii AF520707 prokMSA_id:61203 Dickeya dianthicola AF520708 prokMSA_id:63456 Xenorhabdus nematophila complete prokMSA_id:66731 Pectobacterium carotovorum subsp. wasabiae strain 92 AF37319 prokMSA_id:66732 Pectobacterium carotovorum subsp. wasabiae strain 91 prokMSA_id:66748 Pectobacterium chrysanthemi strain 340 AF373173 prokMSA_id:66750 Pectobacterium chrysanthemi strain 582 AF373175 prokMSA_id:72670 Pectobacterium carotovorum subsp. wasabiae strain 93 prokMSA_id:72805 Pectobacterium chrysanthemi strain 580 ; -23S intergenic spa prokMSA_id:81553 Pectobacterium carotovorum subsp. brasiliensis strain 212T A prokMSA_id:82259 Pectobacterium carotovorum subsp. brasiliensis strain 8 AY20 prokMSA_id:82434 Pectobacterium carotovorum subsp. brasiliensis strain 371 prokMSA_id:85814 Photorhabdus sp. Q614 prokMSA_id:87839 Xenorhabdus nematophila AY286478 prokMSA_id:87960 Xenorhabdus nematophila AY278674 prokMSA_id:93777 Erwinia chrysanthemi strain S3-1 AY360397 2.28.3.27.13.5.8684 OTU 4 seqs prokMSA_id:86576 Photorhabdus luminescens subsp. thraceaensis strain DSM 1519 prokMSA_id:87480 Photorhabdus sp. KOH AY278667 prokMSA_id:87583 Photorhabdus sp. Az29 AY278668 prokMSA_id:87761 Photorhabdus sp. MOL AY278669 2.28.3.27.13.5.8715 OTU 4 seqs prokMSA_id:10244 Xenorhabdus bovienii ATCC 35271 prokMSA_id:10246 Xenorhabdus bovienii DSM 4766 prokMSA_id:10247 Xenorhabdus OS21 str. OS21. AF079816 prokMSA_id:89531 Xenorhabdus bovienii strain CB54 AY317154 2.28.3.27.13.5.8846 OTU 1 seq prokMSA_id:10245 Xenorhabdus poinarii DSM 4768 2.28.3.27.13.5.8862 OTU 26 seqs prokMSA_id:10219 Photorhabdus luminescens str. V6-1 prokMSA_id:10221 Photorhabdus luminescens str. HP88. Z76743 prokMSA_id:10222 Photorhabdus luminescens str. Brecon prokMSA_id:10224 Photorhabdus luminescens str. Q614 prokMSA_id:10231 Photorhabdus luminescens str. LN2 prokMSA_id:17167 Photorhabdus luminescens subsp. laumondii strain TUR1 AJ2951 prokMSA_id:46111 Photorhabdus luminescens subsp. laumondii strain TT01 prokMSA_id:72527 Photorhabdus luminescens subsp. akhurstii strain FRG0 prokMSA_id:74806 Photorhabdus luminescens subsp. laumondii strain TUR2 prokMSA_id:83069 Photorhabdus luminescens subsp. kayaii tyep strain DSM 15194 prokMSA_id:85007 Photorhabdus luminescens subsp. laumondii strain DSM 15195 A prokMSA_id:85557 Photorhabdus luminescens subsp. kayaii strain DSM 15198 prokMSA_id:85843 Photorhabdus luminescens subsp. kayaii strain DSM 15197 prokMSA_id:86788 Photorhabdus luminescens subsp. laumondii strain Az36 AY2786 prokMSA_id:86852 Photorhabdus luminescens subsp. laumondii strain ARG AY27865 prokMSA_id:87048 Photorhabdus luminescens subsp. laumondii strain TT01 AY2786 prokMSA_id:87446 Photorhabdus luminescens subsp. laumondii strain Brecon AY27 prokMSA_id:87568 Photorhabdus luminescens subsp. akhurstii strain IS5 AY27864 prokMSA_id:87663 Photorhabdus luminescens subsp. laumondii strain HP88 AY2786 prokMSA_id:94459 Photorhabdus luminescens subsp. laumondii TTO1 complete geno prokMSA_id:94735 Photorhabdus luminescens subsp. laumondii TTO1 complete geno prokMSA_id:95015 Photorhabdus luminescens subsp. laumondii TTO1 complete geno prokMSA_id:95017 Photorhabdus luminescens subsp. laumondii TTO1 complete geno prokMSA_id:95065 Photorhabdus luminescens subsp. laumondii TTO1 complete geno prokMSA_id:95127 Photorhabdus luminescens subsp. laumondii TTO1 complete geno prokMSA_id:98744 Photorhabdus luminescens subsp. laumondii TTO1 complete geno 2.28.3.27.13.5.8907 OTU 1 seq prokMSA_id:10255 Xenorhabdus japonicus str. SK-1 2.28.3.27.13.5.9029 OTU 4 seqs prokMSA_id:81918 Photorhabdus asymbiotica prokMSA_id:91045 Photorhabdus asymbiotica strain 9802892 AY280572 prokMSA_id:91807 Photorhabdus asymbiotica strain GCH001 AY280574 prokMSA_id:91820 Photorhabdus asymbiotica strain MB AY280573 2.28.3.27.13.5.9098 OTU 3 seqs prokMSA_id:10260 Photorhabdus NP1 str. NP1. AF079811 prokMSA_id:10261 Photorhabdus OH10 str. OH10. AF079812 prokMSA_id:10262 Photorhabdus SJ2 str. SJ2 2.28.3.27.13.5.9264 OTU 19 seqs prokMSA_id:10257 Photorhabdus luminescens DSM 3369 prokMSA_id:10258 Photorhabdus luminescens ATCC 29304 prokMSA_id:10264 Photorhabdus luminescens str. WX2 prokMSA_id:10265 Photorhabdus luminescens str. WX11 prokMSA_id:10266 Photorhabdus luminescens str. Mge1 prokMSA_id:10267 Photorhabdus luminescens str. Meg2 prokMSA_id:10282 Photorhabdus luminescens str. Ehlers HSH2 prokMSA_id:10293 Photorhabdus luminescens str. PE 87.3 prokMSA_id:30793 Photorhabdus temperata strain XINach prokMSA_id:86723 Photorhabdus temperata strain Wx10 AY278663 prokMSA_id:86767 Photorhabdus temperata strain Wx9 AY278661 prokMSA_id:86932 Photorhabdus temperata strain Meg1 AY278655 prokMSA_id:87111 Photorhabdus temperata strain NC19 AY278657 prokMSA_id:87269 Photorhabdus temperata strain Wx11 AY278664 prokMSA_id:87486 Photorhabdus temperata strain K122 AY278651 prokMSA_id:87645 Photorhabdus temperata strain HL81 AY278653 prokMSA_id:87936 Photorhabdus temperata strain H4 AY278654 prokMSA_id:87965 Photorhabdus temperata strain Heliothidis AY278658 prokMSA_id:88052 Photorhabdus temperata strain Wx9Hyper AY278662 2.28.3.27.13.5.9502 OTU 1 seq prokMSA_id:41267 Secondary symbiont -U of Uroleucon aenum rrs 2.28.3.27.14 YERSINIA_SUBGROUP 86 seqs 2.28.3.27.14.1 BN.NIGRIFLUENS_SUBGROUP 4 seqs 2.28.3.27.14.1.9276 OTU 1 seq prokMSA_id:10303 Obesumbacterium proteus DSM 2777 2.28.3.27.14.1.9327 OTU 3 seqs prokMSA_id:10307 Brenneria nigrifluens ATCC 13028 prokMSA_id:10308 Brenneria nigrifluens LMG 2694 prokMSA_id:45637 Erwinia nigrifluens strain DSM 30175 2.28.3.27.14.2 ER.AMERICANA_SUBGROUP 17 seqs 2.28.3.27.14.2.8473 OTU 11 seqs prokMSA_id:10302 Hafnia alvei ATCC 13337 . M59155 prokMSA_id:10310 Rahnella 'CDC 1-576' CDC 1-576 prokMSA_id:10311 Rahnella 'CDC 21234' CDC 21234 prokMSA_id:10312 Rahnella 'CDC 658-79' CDC 658-79 prokMSA_id:10313 Rahnella 'CDC Bonn7' CDC Bonn7 prokMSA_id:10314 Rahnella 'CDC Italy 2383' str. 2383 CDC Italy prokMSA_id:10316 unnamed organism prokMSA_id:70669 amplicon K prokMSA_id:84587 Hafnia alvei isolate m 49 prokMSA_id:85035 Rahnella aquatilis m 46 prokMSA_id:86541 Hafnia alvei isolate k 43 2.28.3.27.14.2.8761 OTU 3 seqs prokMSA_id:28751 Buchnera aphidicola Yamatocallis tokyoensis isolate:#526 sec prokMSA_id:43984 Buchnera aphidicola Yamatocallis tokyoensis isolate:#525 sec prokMSA_id:47317 Buchnera aphidicola Yamatocallis tokyoensis isolate:#566 sec 2.28.3.27.14.2.9265 OTU 1 seq prokMSA_id:84349 Rahnella aquatilis isolate k 8 2.28.3.27.14.2.9326 OTU 1 seq prokMSA_id:27646 GKS2-91 2.28.3.27.14.2.9337 OTU 1 seq prokMSA_id:10315 Rahnella genosp. 3 DSM 30078 2.28.3.27.14.3 RAH.AQUATILIS_SUBGROUP 8 seqs 2.28.3.27.14.3.8564 OTU 7 seqs prokMSA_id:10331 Rahnella aquatilis str. 334. X79936 prokMSA_id:10333 Rahnella 'CDC 2987-79' CDC 2987-79 prokMSA_id:10334 Rahnella aquatilis CDC 1327-79 prokMSA_id:10335 Rahnella aquatilis DSM 4594 prokMSA_id:10336 Rahnella aquatilis str. 339. X79938 prokMSA_id:10340 Rahnella aquatilis ATCC 33989. X79939 prokMSA_id:78192 Rahnella aquatilis isolate:YL-1 AB087712 2.28.3.27.14.3.8686 OTU 1 seq prokMSA_id:10332 clone LRE12 2.28.3.27.14.4 YER.ENTEROCOLITICA_SUBGROUP 1 seq 2.28.3.27.14.4.9436 OTU 1 seq prokMSA_id:10343 Budvicia aquatica DSM 5075 2.28.3.27.14.5 YER.PESTIS_SUBGROUP 56 seqs 2.28.3.27.14.5.8649 OTU 1 seq prokMSA_id:10394 Yersinia aldovae ATCC 35236 2.28.3.27.14.5.9157 OTU 4 seqs prokMSA_id:29699 Secondary symbiont -U of Uroleucon astronomus rrs prokMSA_id:42020 Secondary symbiont -U of Acyrthosiphon pisum rrs prokMSA_id:50997 Secondary symbiont -U of Uroleucon solidaginis rrs prokMSA_id:85563 Secondary symbiont -U of Acyrthosiphon pisum 2.28.3.27.14.5.9262 OTU 26 seqs prokMSA_id:10341 Yersinia enterocolitica prokMSA_id:10342 Yersinia enterocolitica str. ER-3206-92 prokMSA_id:10345 Yersinia enterocolitica str. ER-26036-92. Z49829 prokMSA_id:10346 Yersinia enterocolitica str. O:3 108 c prokMSA_id:10347 Yersinia enterocolitica str. German prokMSA_id:10348 Yersinia enterocolitica prokMSA_id:10349 Yersinia enterocolitica str. ER-31406-92 prokMSA_id:10363 Yersinia ruckeri ATCC 29473 prokMSA_id:10386 Yersinia sp prokMSA_id:10389 Yersinia enterocolitica. X68672 prokMSA_id:10391 Yersinia sp prokMSA_id:10393 Yersinia rohdei str. ER-2935 ATCC 43380 prokMSA_id:17691 Yersinia intermedia prokMSA_id:17733 Yersinia kristensenii prokMSA_id:23050 Yersinia pseudotuberculosis strain R 708 LY AF365948 prokMSA_id:23716 Yersinia pseudotuberculosis strain R 1505 AF365950 prokMSA_id:28126 Yersinia pseudotuberculosis strain 1147 AF365945 prokMSA_id:34461 Yersinia rohdei prokMSA_id:37259 Yersinia mollaretii prokMSA_id:38612 Yersinia pseudotuberculosis strain Kuratani-2 AF365936 prokMSA_id:39860 Yersinia aldovae prokMSA_id:41539 Yersinia enterocolitica prokMSA_id:41642 Yersinia bercovieri AF366377 prokMSA_id:41648 Yersinia frederiksenii prokMSA_id:50988 Yersinia ruckeri prokMSA_id:52901 Yersinia enterocolitica 2.28.3.27.14.5.9346 OTU 23 seqs prokMSA_id:10366 Yersinia pseudotuberculosis str. Serotype III 1B1 B28 W.W. prokMSA_id:10369 Yersinia pestis str. SS-Yp-09. AJ232224 prokMSA_id:10371 Yersinia pestis str. SS-Yp-102. AJ232226 prokMSA_id:10372 Yersinia pestis str. SS-Yp-103. AJ232227 prokMSA_id:10373 Yersinia pestis str. SS-Yp-104. AJ232228 prokMSA_id:10375 Yersinia pestis str. SS-Yp-106. AJ232230 prokMSA_id:10380 Yersinia pestis str. SS-Yp-113. AJ232235 prokMSA_id:10381 Yersinia pestis str. SS-Yp-114. AJ232236 prokMSA_id:10384 Yersinia pestis str. SS-Yp-117. AJ232239 prokMSA_id:10388 Yersinia pestis str. D-28 ATCC 19428 . X75274 prokMSA_id:18014 Yersinia pseudotuberculosis prokMSA_id:22202 Yersinia pseudotuberculosis strain 2883 prokMSA_id:25758 Yersinia pseudotuberculosis strain 151 prokMSA_id:30561 Yersinia pseudotuberculosis strain 204 prokMSA_id:37543 Yersinia pseudotuberculosis strain 49 prokMSA_id:42238 Yersinia pseudotuberculosis strain 51 prokMSA_id:42764 Yersinia pseudotuberculosis strain 197 AF365944 prokMSA_id:46996 Yersinia pseudotuberculosis strain 6088 prokMSA_id:52382 Yersinia pseudotuberculosis strain 212 prokMSA_id:56451 Yersinia pestis KIM section 2 of 415 of the complete genome prokMSA_id:57519 Yersinia pestis strain CO92 complete genome; segment 19/20 A prokMSA_id:57521 Yersinia pestis strain CO92 complete genome; segment 1/20 prokMSA_id:63168 Yersinia pestis KIM section 385 of 415 of the complete genom 2.28.3.27.14.5.9408 OTU 2 seqs prokMSA_id:85221 Secondary symbiont -U of Chaitophorus populeti prokMSA_id:86615 Secondary symbiont -U of Brachycaudus cardui 2.28.3.27.15 PLE.SHIGELLOIDES_SUBGROUP 2 seqs 2.28.3.27.15.8650 OTU 2 seqs prokMSA_id:10395 Plesiomonas shigelloides str. M51 NCIMB 9242 prokMSA_id:10396 Plesiomonas shigelloides str. M51 CIP 63.5 . X74688 2.28.4 DELTA_SUBDIVISION 995 seqs 2.28.4.1 DESULFOVIBRIO_GROUP 156 seqs 2.28.4.1.1 DHB.RETBAENSE_SUBGROUP 15 seqs 2.28.4.1.1.10012 OTU 1 seq prokMSA_id:21406 MT63 2.28.4.1.1.10029 OTU 1 seq prokMSA_id:35807 low G+C Gram-positive MERTZ_0CM_200 2.28.4.1.1.10054 OTU 1 seq prokMSA_id:10405 clone BURTON-48 2.28.4.1.1.10044 OTU 1 seq prokMSA_id:10402 str. TD3 2.28.4.1.1.10069 OTU 2 seqs prokMSA_id:75971 delta clone BLIB-74 prokMSA_id:83169 delta clone ABBB-52 2.28.4.1.1.10052 OTU 1 seq prokMSA_id:10404 Desulfonatronovibrio hydrogenovorans str. Z-7935 DSM 9292 2.28.4.1.1.10055 OTU 1 seq prokMSA_id:10406 clone ACE-39 2.28.4.1.1.10058 OTU 1 seq prokMSA_id:10407 clone ACE-9 2.28.4.1.1.10042 OTU 1 seq prokMSA_id:10400 Desulfohalobium retbaense str. HR100 DSM 5692 2.28.4.1.1.10043 OTU 1 seq prokMSA_id:10401 Desulfohalobium retbaense str. HR100 DSM 5692 2.28.4.1.1.9761 OTU 1 seq prokMSA_id:19746 clone t045 2.28.4.1.1.9869 OTU 1 seq prokMSA_id:22125 SBR1093 2.28.4.1.1.9894 OTU 1 seq prokMSA_id:74638 Desulfonauticus submarinus 2.28.4.1.1.9973 OTU 1 seq prokMSA_id:70052 clone 49531 2.28.4.1.2 DFN.LACUSTRE 3 seqs 2.28.4.1.2.10338 OTU 3 seqs prokMSA_id:10408 Desulfonatronum lacustre str. z-7951. Y14594 prokMSA_id:24344 Desulfonatronum sp. MLF1 AF373920 prokMSA_id:73563 Desulfonatronum lacustre DSM 10312 2.28.4.1.3 DMB.BACULATUM_SUBGROUP 26 seqs 2.28.4.1.3.10079 OTU 7 seqs prokMSA_id:10412 clone Aspo1 prokMSA_id:10414 Desulfobacterium macestii str. sulfide spring DSM 4194 prokMSA_id:10415 Desulfomicrobium hypogeium str. CN-A prokMSA_id:17898 Desulfomicrobium baculatum strain DSM 4028T prokMSA_id:21280 Desulfomicrobium baculatum strain DSM 1742 prokMSA_id:33526 Desulfomicrobium escambiense strain DSM 10707T prokMSA_id:64335 Desulfomicrobium sp. 'Delta +' 2.28.4.1.3.10225 OTU 11 seqs prokMSA_id:23777 Desulfomicrobium orale strain DSM12838 prokMSA_id:30927 Desulfomicrobium orale strain NY676 prokMSA_id:31560 Desulfomicrobium orale strain NY679 prokMSA_id:69810 delta clone P4-16 prokMSA_id:69839 Desulfomicrobium orale strain NY683 prokMSA_id:70990 delta clone P1-1 prokMSA_id:71073 delta clone P4-14 prokMSA_id:71263 delta clone P4-17 prokMSA_id:71904 delta clone P4-15 prokMSA_id:73344 Desulfomicrobium orale strain NY677 AJ251629 prokMSA_id:73693 delta clone P4-13 2.28.4.1.3.10312 OTU 1 seq prokMSA_id:30749 clone clB27 2.28.4.1.3.10314 OTU 1 seq prokMSA_id:10421 Desulfomicrobium escambiense str. ESC1 ATCC 51164 2.28.4.1.3.10340 OTU 1 seq prokMSA_id:43622 O11G2 2.28.4.1.3.10370 OTU 5 seqs prokMSA_id:10413 Desulfomicrobium sp. str. STL8 prokMSA_id:10418 Desulfomicrobium baculatum str. strain X VKM B-1378 prokMSA_id:10419 Desulfomicrobium apsheronum str. 1105 DSM 5918 . U64865 prokMSA_id:50942 Desulfomicrobium sp. 'Bendigo B' prokMSA_id:72167 mle1-31 2.28.4.1.4 DESULFOVIBRIO_SUBGROUP 112 seqs 2.28.4.1.4.1 DSV.HALOPHILUS_SUBGROUP 19 seqs 2.28.4.1.4.1.10149 OTU 6 seqs prokMSA_id:10436 Desulfovibrio halophilus DSM 5663 prokMSA_id:10437 Desulfovibrio halophilus DSM 5663 prokMSA_id:10438 Desulfovibrio sp. str. PIB. U33316 prokMSA_id:10439 Desulfovibrio sp. SEBR 6143 prokMSA_id:10440 Desulfovibrio sp. str. Solar Lake. L42995 prokMSA_id:71182 Desulfovibrio sp. L42995 2.28.4.1.4.1.10214 OTU 1 seq prokMSA_id:30839 Desulfovibrio dechloracetivorans 2.28.4.1.4.1.10229 OTU 1 seq prokMSA_id:48166 marine anaerobic 90d4 2.28.4.1.4.1.10189 OTU 1 seq prokMSA_id:70595 sp. clone group A7hq 2.28.4.1.4.1.10263 OTU 1 seq prokMSA_id:80009 Desulfovibrio brasiliensis strain LVform1 2.28.4.1.4.1.10262 OTU 2 seqs prokMSA_id:54085 Desulfovibrio sp. Ac5.2 prokMSA_id:87245 Desulfovibrionaceae MSL79 AB110541 2.28.4.1.4.1.10318 OTU 1 seq prokMSA_id:10429 Desulfovibrio aespoeensis 2.28.4.1.4.1.10356 OTU 2 seqs prokMSA_id:23150 Desulfovibrio sp. La1.3 prokMSA_id:32600 Desulfovibrio sp. La1.2 2.28.4.1.4.1.9711 OTU 2 seqs prokMSA_id:10427 Desulfovibrio profundus str. 500-1 DSM 11384 prokMSA_id:72826 Desulfovibrio profundus DSM 11384 2.28.4.1.4.1.9789 OTU 1 seq prokMSA_id:43170 Desulfovibrio sp. Pr1.2 2.28.4.1.4.1.9854 OTU 1 seq prokMSA_id:51052 clone clB80 2.28.4.1.4.2 DSV.ZOSTERAE_SUBGROUP 5 seqs 2.28.4.1.4.2.10059 OTU 1 seq prokMSA_id:56227 Desulfovibrio hydrothermalis 2.28.4.1.4.2.10269 OTU 1 seq prokMSA_id:46775 delta clone CD4C5 2.28.4.1.4.2.10327 OTU 1 seq prokMSA_id:30757 clone CD4B6 2.28.4.1.4.2.10349 OTU 1 seq prokMSA_id:10442 Desulfovibrio zosterae str. lac 2.28.4.1.4.2.10354 OTU 1 seq prokMSA_id:10445 Desulfovibrio bastinii SEBR 4225 2.28.4.1.4.3 DSV.SENEZII_SUBGROUP 2 seqs 2.28.4.1.4.3.9988 OTU 2 seqs prokMSA_id:10448 Desulfovibrio senezii str. CVL DSM 8436 prokMSA_id:10449 Desulfovibrio sp. str. CVH2 2.28.4.1.4.5 DSV.AMINOPHILUS_SUBGROUP 10 seqs 2.28.4.1.4.5.10022 OTU 1 seq prokMSA_id:77555 clone R2b32 2.28.4.1.4.5.10063 OTU 3 seqs prokMSA_id:10456 Desulfovibrio Mlhm str. Mlhm prokMSA_id:10458 unnamed organism prokMSA_id:51153 clone GIF11 2.28.4.1.4.5.10138 OTU 1 seq prokMSA_id:19551 Desulfovibrio mexicoense 2.28.4.1.4.5.10376 OTU 1 seq prokMSA_id:10454 Desulfovibrio aminophilus str. ALA-3 2.28.4.1.4.5.9713 OTU 2 seqs prokMSA_id:10455 Desulfovibrio zt31 str. zt3l prokMSA_id:82207 clone ZZ14C2 2.28.4.1.4.5.9792 OTU 1 seq prokMSA_id:44516 clone TDC-006 2.28.4.1.4.5.9836 OTU 1 seq prokMSA_id:34507 Toluene-degrading methanogenic consortium Eub 5 2.28.4.1.4.6 DSV.AFRICANUS_SUBGROUP 17 seqs 2.28.4.1.4.6.10023 OTU 1 seq prokMSA_id:73426 Desulfovibrio magneticus 2.28.4.1.4.6.10105 OTU 1 seq prokMSA_id:32796 clone UASB_brew_B82 2.28.4.1.4.6.10163 OTU 1 seq prokMSA_id:18998 clone UASB_brew_B4 2.28.4.1.4.6.10244 OTU 1 seq prokMSA_id:66105 delta clone:KB47 2.28.4.1.4.6.10339 OTU 1 seq prokMSA_id:74366 clone clB03 2.28.4.1.4.6.9670 OTU 1 seq prokMSA_id:41341 RFLP109 2.28.4.1.4.6.9680 OTU 1 seq prokMSA_id:10461 str. RS-1 2.28.4.1.4.6.9684 OTU 1 seq prokMSA_id:10463 Desulfovibrio BG6 str. BG6 2.28.4.1.4.6.9683 OTU 1 seq prokMSA_id:10462 Desulfovibrio burkinensis str. HDv DSM 6830 2.28.4.1.4.6.9689 OTU 1 seq prokMSA_id:10468 unnamed organism 2.28.4.1.4.6.9690 OTU 1 seq prokMSA_id:10469 Desulfovibrio inopinatus str. HHQ 20 2.28.4.1.4.6.9714 OTU 1 seq prokMSA_id:10471 Desulfovibrio zt10e str. zt10e 2.28.4.1.4.6.9717 OTU 1 seq prokMSA_id:10473 Desulfovibrio sulfodismutans str. ThAcO1 2.28.4.1.4.6.9722 OTU 1 seq prokMSA_id:10478 Desulfovibrio africanus DSM 2603 2.28.4.1.4.6.9721 OTU 1 seq prokMSA_id:10474 clone vadinHA40 2.28.4.1.4.6.9987 OTU 2 seqs prokMSA_id:10470 Desulfovibrio alcoholovorans str. SPSN DSM 5433 prokMSA_id:10475 unnamed organism 2.28.4.1.4.7 DSV.GABONENSIS_SUBGROUP 4 seqs 2.28.4.1.4.7.10248 OTU 1 seq prokMSA_id:68874 Desulfovibrio giganteus DSM 4370 2.28.4.1.4.7.10241 OTU 3 seqs prokMSA_id:10480 Desulfovibrio gabonensis SEBR 2840 . U31080 prokMSA_id:26629 D.indonensis prokMSA_id:37664 Desulfovibrio sp. Met 82 2.28.4.1.4.8 DSV.CUNEATUS_SUBGROUP 3 seqs 2.28.4.1.4.8.10016 OTU 1 seq prokMSA_id:78137 delta clone:Rs-N35 2.28.4.1.4.8.9753 OTU 1 seq prokMSA_id:10486 Desulfovibrio cuneatus str. STL1 DSM 11391 2.28.4.1.4.8.9750 OTU 1 seq prokMSA_id:10485 Desulfovibrio litoralis str. STL6 DSM 11393 2.28.4.1.4.9 LW.INTRACELLULARIS_SUBGROUP 6 seqs 2.28.4.1.4.9.10077 OTU 6 seqs prokMSA_id:10489 symbiont of intracellular ileal symbiont of Mesocricetus aur prokMSA_id:10490 Lawsonia intracellularis str. 1482/89 NCTC 12656 prokMSA_id:10491 symbiont of Sus scrofa prokMSA_id:10496 Desulfovibrio sp. str. MIT 87-599 prokMSA_id:72733 Lawsonia intracellularis prokMSA_id:74139 Desulfovibrio sp 2.28.4.1.4.10 DSV.LONGREACHENSIS_SUBGROUP 17 seqs 2.28.4.1.4.10.10019 OTU 2 seqs prokMSA_id:10506 Desulfovibrio acrylicus str. W218 DSM 10141 prokMSA_id:10508 Desulfovibrio TBP-1 str. TBP-1 2.28.4.1.4.10.10051 OTU 3 seqs prokMSA_id:10505 Desulfovibrio sp. str. DMB prokMSA_id:34844 Desulfovibrio sp. 'Bendigo A' prokMSA_id:36540 Desulfovibrio vulgaris DSM 644 2.28.4.1.4.10.10139 OTU 9 seqs prokMSA_id:10498 Desulfovibrio termitidis. X87409 prokMSA_id:10500 Desulfovibrio sp. str. KH2 prokMSA_id:10502 Desulfovibrio longreachensis str. 16910a prokMSA_id:26806 Desulfovibrio sp. IrT-JG1-71 prokMSA_id:27402 Desulfovibrio sp. R2 prokMSA_id:39982 Desulfovibrio oryzae prokMSA_id:46889 Desulfovibrio sp. IrT-JG1-58 prokMSA_id:71137 Desulfovibrio sp. JG5 prokMSA_id:71502 Desulfovibrio sp. JG1 AJ295678 2.28.4.1.4.10.10201 OTU 2 seqs prokMSA_id:10507 Desulfovibrio sp prokMSA_id:28397 Desulfovibrio alaskensis strain NCIMB 13491 Y11984 2.28.4.1.4.10.9826 OTU 1 seq prokMSA_id:78002 delta clone:Rs-M72 2.28.4.1.4.11 DSV.DESULFURICANS_SUBGROUP 29 seqs 2.28.4.1.4.11.10009 OTU 1 seq prokMSA_id:30569 clone p-2918-6C5 2.28.4.1.4.11.10041 OTU 1 seq prokMSA_id:23507 clone:BCf11-19 2.28.4.1.4.11.10071 OTU 9 seqs prokMSA_id:10515 Desulfovibrio desulfuricans subsp. desulfuricans ATCC 27774 prokMSA_id:10516 Desulfovibrio desulfuricans prokMSA_id:10526 Desulfovibrio sp. str. KRS1 prokMSA_id:22674 clone 9E prokMSA_id:45268 Desulfovibrio desulfuricans subsp. desulfuricans strain Esse prokMSA_id:48934 Desulfovibrio desulfuricans prokMSA_id:50393 Desulfovibrio desulfuricans strain 0104 959 prokMSA_id:72418 Desulfovibrio sp. FD1 prokMSA_id:81316 MTCE-T2 12D 2.28.4.1.4.11.10075 OTU 3 seqs prokMSA_id:10512 Desulfovibrio ABHU1SB str. ABHU1SB prokMSA_id:10513 Desulfovibrio ABHU1SBfatS str. ABHU1SBfatS prokMSA_id:10514 Desulfovibrio ABHU2SB str. ABHU2SB 2.28.4.1.4.11.10212 OTU 1 seq prokMSA_id:10510 Desulfovibrio sp. str. KRS2 2.28.4.1.4.11.10192 OTU 1 seq prokMSA_id:68469 Desulfovibrio sp. A45 2.28.4.1.4.11.10291 OTU 1 seq prokMSA_id:26467 ckncm168-F3M.1D4 2.28.4.1.4.11.10292 OTU 3 seqs prokMSA_id:10519 Desulfovibrio intestinalis str. KMS2 prokMSA_id:33199 Desulfovibrio desulfuricans subsp. desulfuricans strain MB c prokMSA_id:93874 Core-3 AB111106 2.28.4.1.4.11.10361 OTU 3 seqs prokMSA_id:10511 Desulfovibrio fairfieldensis prokMSA_id:25583 Desulfovibrio sp. D4 complete prokMSA_id:49692 Desulfovibrio sp. DSM12803 2.28.4.1.4.11.9709 OTU 1 seq prokMSA_id:78153 delta clone:Rs-N31 2.28.4.1.4.11.9745 OTU 1 seq prokMSA_id:10517 Bilophila wadsworthia str. RZATAU 2.28.4.1.4.11.9747 OTU 1 seq prokMSA_id:10518 Desulfovibrio UNSW3caefatS str. UNSW3caefatS 2.28.4.1.4.11.9828 OTU 1 seq prokMSA_id:78006 delta clone:Rs-M89 2.28.4.1.4.11.9980 OTU 2 seqs prokMSA_id:51535 Desulfomonas pigra complete prokMSA_id:52234 clone p-223-o5 2.28.4.2 BDE.STOLPII_GROUP 54 seqs 2.28.4.2.1 BDE.STOLPII_SUBGROUP 15 seqs 2.28.4.2.1.10010 OTU 1 seq prokMSA_id:75942 delta clone JG37-AG-139 2.28.4.2.1.10250 OTU 1 seq prokMSA_id:40173 FukuN9 2.28.4.2.1.10271 OTU 2 seqs prokMSA_id:31879 Bdellovibrio sp. JS3 prokMSA_id:38577 Bdellovibrio sp. JS5 AF084859 2.28.4.2.1.9692 OTU 1 seq prokMSA_id:33331 delta HOC41 2.28.4.2.1.9748 OTU 2 seqs prokMSA_id:49685 Bdellovibrio stolpii strain DSM 12778 prokMSA_id:67145 stolpii AY094131 2.28.4.2.1.9778 OTU 1 seq prokMSA_id:38634 Bdellovibrio sp. Gunpowder 2.28.4.2.1.9802 OTU 1 seq prokMSA_id:10535 clone Sva0447 2.28.4.2.1.9844 OTU 6 seqs prokMSA_id:19894 Bdellovibrio sp. JS7 AF084862 prokMSA_id:22841 Bdellovibrio sp. JS10 AF084863 prokMSA_id:23141 Bdellovibrio sp. JS4 prokMSA_id:25914 Bdellovibrio sp. JS2 prokMSA_id:28791 Bdellovibrio sp. JS6 AF084860 prokMSA_id:38867 Bdellovibrio sp. JS7 AF084861 2.28.4.2.2 ENVIRONMENTAL_CLONE_VADIN_BA07_SUBGROUP 17 seqs 2.28.4.2.2.10203 OTU 1 seq prokMSA_id:61498 division TM6 clone NOS7.2WL 2.28.4.2.2.10289 OTU 1 seq prokMSA_id:32172 SBRH58 2.28.4.2.2.10372 OTU 2 seqs prokMSA_id:29910 clone Ebpr8 prokMSA_id:33441 clone Ebpr6 2.28.4.2.2.9682 OTU 1 seq prokMSA_id:61307 division TM6 clone NMW3.210WL 2.28.4.2.2.9803 OTU 1 seq prokMSA_id:65674 soil clone S1204 2.28.4.2.2.9809 OTU 1 seq prokMSA_id:10537 clone HstpL37 2.28.4.2.2.9816 OTU 1 seq prokMSA_id:10539 clone ACE-36 2.28.4.2.2.9830 OTU 1 seq prokMSA_id:10540 clone ACE-15 2.28.4.2.2.9834 OTU 1 seq prokMSA_id:10543 clone TM6 2.28.4.2.2.9833 OTU 1 seq prokMSA_id:10541 clone CLEAR-25 2.28.4.2.2.9840 OTU 1 seq prokMSA_id:10545 clone TM10 2.28.4.2.2.9838 OTU 1 seq prokMSA_id:10544 clone TM21 2.28.4.2.2.9896 OTU 1 seq prokMSA_id:33719 MERTZ_2CM_115 2.28.4.2.2.9914 OTU 3 seqs prokMSA_id:10536 clone vadinBA07 prokMSA_id:10538 clone SJA-4 prokMSA_id:50582 C1-3 clone C1-3 2.28.4.2.3 ENVIRONMENTAL_CLONE_WCHA2-26_SUBGROUP 3 seqs 2.28.4.2.3.10234 OTU 1 seq prokMSA_id:10549 clone WCHA2-26 2.28.4.2.3.9841 OTU 1 seq prokMSA_id:10546 Pacific Ocean station 16 100m depth clone 2.28.4.2.3.9843 OTU 1 seq prokMSA_id:10548 clone pN1-3 2.28.4.2.4 ENVIRONMENTAL_CLONE_OPS136_SUBGROUP 2 seqs 2.28.4.2.4.9860 OTU 1 seq prokMSA_id:10550 clone WCHA1-16 2.28.4.2.4.9862 OTU 1 seq prokMSA_id:10552 clone OPS136 2.28.4.2.5 ENVIRONMENTAL_CLONE_WCHB1-56_SUBGROUP 9 seqs 2.28.4.2.5.10113 OTU 1 seq prokMSA_id:30636 clone PRD01a009B 2.28.4.2.5.10169 OTU 1 seq prokMSA_id:10556 clone WCHA1-09 2.28.4.2.5.10160 OTU 1 seq prokMSA_id:10555 clone WCHB1-11 2.28.4.2.5.10170 OTU 1 seq prokMSA_id:10558 clone WCHB1-56 2.28.4.2.5.10295 OTU 2 seqs prokMSA_id:79637 candidate division OP11 clone WSA68 prokMSA_id:79984 candidate division OP11 clone WSA1 2.28.4.2.5.9881 OTU 1 seq prokMSA_id:10553 clone LGd17 2.28.4.2.5.9883 OTU 1 seq prokMSA_id:10554 clone LGd14 2.28.4.2.5.9888 OTU 1 seq prokMSA_id:10559 clone P36b 2.28.4.2.6 ENVIRONMENTAL_CLONE_WCHB1-07_SUBGROUP 7 seqs 2.28.4.2.6.10125 OTU 1 seq prokMSA_id:18743 Toluene-degrading methanogenic consortium Eub 2 2.28.4.2.6.10188 OTU 1 seq prokMSA_id:10567 clone WCHB1-26 2.28.4.2.6.10246 OTU 1 seq prokMSA_id:82149 clone KD2-5 2.28.4.2.6.10281 OTU 1 seq prokMSA_id:41471 clone RFLP 8E 2.28.4.2.6.9927 OTU 1 seq prokMSA_id:10560 clone WCHB1-64 2.28.4.2.6.9933 OTU 1 seq prokMSA_id:10564 clone WCHA1-20 2.28.4.2.6.9934 OTU 1 seq prokMSA_id:10565 clone WCHA1-24 2.28.4.2.7 ENVIRONMENTAL_CLONE_WCHA1-11_SUBGROUP 1 seq 2.28.4.2.7.10156 OTU 1 seq prokMSA_id:10568 clone WCHA1-11 2.28.4.3 DSR.ACETIVORANS_GROUP 8 seqs 2.28.4.3.10144 OTU 1 seq prokMSA_id:51780 Hippea maritima 2.28.4.3.10317 OTU 5 seqs prokMSA_id:10570 Desulfurella acetivorans DSM 5264 prokMSA_id:10571 Desulfurella multipotens str. RH-8 DSM 8415 . Y16943 prokMSA_id:10572 Desulfurella propionica str. U-8 DSM 10410 . Y16942 prokMSA_id:10573 Desulfurella kamchatkensis str. K-119 DSM 10409 . Y16941 prokMSA_id:47020 delta MS10 2.28.4.3.9855 OTU 1 seq prokMSA_id:45576 clone B45 2.28.4.3.9990 OTU 1 seq prokMSA_id:33655 Desulfurella sp. clone 2.28.4.6 MYXOBACTERIA 120 seqs 2.28.4.6.1 MYX.XANTHUS_SUBGROUP 76 seqs 2.28.4.6.1.10066 OTU 18 seqs prokMSA_id:10594 Myxococcus xanthus str. DK1622 prokMSA_id:10600 Cystobacter disciformis str. An d1 prokMSA_id:10601 Myxococcus flavescens str. Mx fl1 prokMSA_id:10603 Myxococcus fulvus str. Mx f421 prokMSA_id:10604 Myxococcus fulvus str. Mx f428 prokMSA_id:10605 Myxococcus macrosporus str. Cc m7 prokMSA_id:10606 Myxococcus macrosporus str. Cc m8 prokMSA_id:10610 Myxococcus virescens str. Mx v2 prokMSA_id:10611 Myxococcus virescens str. Mx v76 prokMSA_id:10612 Myxococcus virescens str. Mx v1 prokMSA_id:10613 Myxococcus virescens str. Mx v144 prokMSA_id:10614 Myxococcus xanthus str. Mx x1 DSM 435 prokMSA_id:10615 Myxococcus xanthus str. Mx x132 prokMSA_id:20918 Myxococcus fulvus 128-7 complete prokMSA_id:21317 Myxococcus macrosporus strain 125-10-1 complete prokMSA_id:34703 Myxococcus fulvus strain 125-1 complete prokMSA_id:47762 Myxococcus fulvus prokMSA_id:66414 Myxococcus xanthus 2.28.4.6.1.10080 OTU 5 seqs prokMSA_id:10581 Stigmatella erecta str. Pd e3 prokMSA_id:10582 Stigmatella aurantiaca str. Sg a1 prokMSA_id:10583 Stigmatella aurantiaca str. Sg a15 prokMSA_id:10584 Stigmatella aurantiaca str. Sg a28 prokMSA_id:10585 Stigmatella erecta str. Pd e19 2.28.4.6.1.10092 OTU 1 seq prokMSA_id:65455 clone a13134 2.28.4.6.1.10088 OTU 16 seqs prokMSA_id:24157 Anaeromyxobacter dehalogenans strain 2CP-5 prokMSA_id:27824 Anaeromyxobacter dehalogenans strain 2CP-2 prokMSA_id:31177 Anaeromyxobacter dehalogenans strain 2CP-3 prokMSA_id:45051 Anaeromyxobacter dehalogenans strain 2CP-C prokMSA_id:47993 Anaeromyxobacter dehalogenans strain 2CP-1 prokMSA_id:63253 clone FW35 prokMSA_id:66954 Myxobacterium KC prokMSA_id:82538 cf. Anaeromyxobacter sp. clone 90D-25 prokMSA_id:82595 cf. Anaeromyxobacter sp. clone 45D-51 prokMSA_id:83142 cf. Anaeromyxobacter sp. clone 45D-27 prokMSA_id:83217 cf. Anaeromyxobacter sp. clone 90D-12 prokMSA_id:83775 cf. Anaeromyxobacter sp. clone 90D-18 prokMSA_id:83783 cf. Anaeromyxobacter sp. clone 90D-47 prokMSA_id:85245 cf. Anaeromyxobacter sp. clone 45D-26 prokMSA_id:85991 cf. Anaeromyxobacter sp. clone 45D-76 prokMSA_id:86437 cf. Anaeromyxobacter sp. clone 90D-55 2.28.4.6.1.10186 OTU 1 seq prokMSA_id:10580 Stigmatella aurantiaca ATCC 25190 2.28.4.6.1.10230 OTU 1 seq prokMSA_id:10596 clone SJA-5 2.28.4.6.1.10231 OTU 1 seq prokMSA_id:10597 clone OPS152 2.28.4.6.1.10259 OTU 1 seq prokMSA_id:66526 clone cvf63054 2.28.4.6.1.10232 OTU 1 seq prokMSA_id:10599 clone P45 2.28.4.6.1.10313 OTU 1 seq prokMSA_id:21534 clone P3OB-42 2.28.4.6.1.10358 OTU 29 seqs prokMSA_id:10586 str. NOCB-2 prokMSA_id:10587 str. NOCB-4 prokMSA_id:10589 Corallococcus exiguus str. Cc e12b prokMSA_id:10590 Corallococcus exiguus str. Cc e100 prokMSA_id:10591 Myxococcus coralloides str. Cc c494 prokMSA_id:10592 Myxococcus coralloides str. Cc c806 prokMSA_id:10602 Myxococcus fulvus str. Mx f2 prokMSA_id:10607 Myxococcus stipitatus str. Mx s33 prokMSA_id:10608 Myxococcus stipitatus str. Mx s42 prokMSA_id:10609 Myxococcus stipitatus str. Mx s52 prokMSA_id:10617 Cystobacter fuscus str. Cb f6 prokMSA_id:10618 Cystobacter fuscus str. Cb f10 prokMSA_id:10619 Cystobacter fuscus str. Cb f39 prokMSA_id:10620 Cystobacter ferrugineus str. Cb fe18 prokMSA_id:10621 Cystobacter ferrugineus str. Cb fe27 prokMSA_id:10622 Melittangium alboraceum str. Me b7 prokMSA_id:10623 Melittangium boletus str. Me b8 prokMSA_id:10625 Archangium gephyra ATCC 25201 . M94273 prokMSA_id:10626 Cystobacter disciformis str. An d4 prokMSA_id:10627 Cystobacter disciformis str. An d6 prokMSA_id:10628 Archangium gephyra str. Ar g1 prokMSA_id:10629 Archangium gephyra str. Ar g2 prokMSA_id:10630 Cystobacter ferrugineus str. Cb fe13 prokMSA_id:10631 Cystobacter minus str. Cb m2 prokMSA_id:10632 Cystobacter minus str. Cb m6. AJ233904 prokMSA_id:10633 Cystobacter violaceus str. Cb vi29 prokMSA_id:10634 Cystobacter violaceus str. Cb vi34. AJ233906 prokMSA_id:66412 Myxococcus stipitatus prokMSA_id:66415 Cystobacter sp. BD54 2.28.4.6.1.9936 OTU 1 seq prokMSA_id:82334 clone KD3-10 2.28.4.6.3 POL.CELLULOSUM_SUBGROUP 44 seqs 2.28.4.6.3.10074 OTU 2 seqs prokMSA_id:38791 delta prokMSA_id:66013 delta 2.28.4.6.3.10065 OTU 11 seqs prokMSA_id:17113 Polyangium cellulosum complete prokMSA_id:22473 Polyangium cellulosum strain So9857 complete prokMSA_id:29731 Polyangium cellulosum strain So0089-1 complete prokMSA_id:39056 Polyangium cellulosum strain 87-5 complete prokMSA_id:41480 Polyangium cellulosum strain So9882-1 complete prokMSA_id:45207 Polyangium cellulosum So9721-1 complete prokMSA_id:46866 Polyangium cellulosum strain So9881 complete prokMSA_id:47189 Polyangium cellulosum strain So9735-22 complete prokMSA_id:72161 Polyangium cellulosum strain So ce90 prokMSA_id:82906 Polyangium cellulosum strain So02007-3 complete prokMSA_id:86196 Polyangium cellulosum strain So9734 complete 2.28.4.6.3.10122 OTU 1 seq prokMSA_id:10654 str. SMP-2 2.28.4.6.3.10101 OTU 1 seq prokMSA_id:10646 Pele's Vents clone PVB_46 2.28.4.6.3.10120 OTU 1 seq prokMSA_id:10652 Polyangium vitellinum str. Pl vt1 2.28.4.6.3.10104 OTU 1 seq prokMSA_id:26373 Polyangium cellulosum strain 9741 complete 2.28.4.6.3.10099 OTU 1 seq prokMSA_id:10645 Polyangium thaxteri str. Pl t3 2.28.4.6.3.10096 OTU 1 seq prokMSA_id:10641 Chondromyces pediculatus str. Cm p17 2.28.4.6.3.10124 OTU 1 seq prokMSA_id:10657 str. NOSO-1 2.28.4.6.3.10119 OTU 1 seq prokMSA_id:10650 Nannocystis exedens str. Na e1 2.28.4.6.3.10193 OTU 2 seqs prokMSA_id:26165 delta MERTZ_21CM_284 AF424255 prokMSA_id:78239 delta clone Hyd24-27 2.28.4.6.3.10247 OTU 1 seq prokMSA_id:79211 clone csbio160363 2.28.4.6.3.10249 OTU 1 seq prokMSA_id:75311 delta clone JG36-TzT-168 2.28.4.6.3.10286 OTU 1 seq prokMSA_id:37962 Rhizosphere soil clone RSC-II-106 2.28.4.6.3.10298 OTU 1 seq prokMSA_id:79653 clone BTM36 2.28.4.6.3.10309 OTU 2 seqs prokMSA_id:10649 Nannocystis aggregans str. Na a1 prokMSA_id:10651 Nannocystis exedens str. Na e571. AJ233947 2.28.4.6.3.10353 OTU 1 seq prokMSA_id:30991 sludge A9 2.28.4.6.3.10345 OTU 1 seq prokMSA_id:72214 delta isolate Eel-36e1D6 2.28.4.6.3.9671 OTU 1 seq prokMSA_id:67784 isolate C1_B003 2.28.4.6.3.9716 OTU 2 seqs prokMSA_id:84947 Thaxtera salina strain:SMK-1-3 prokMSA_id:85080 Thaxtera salina strain:SHK-1 2.28.4.6.3.9725 OTU 1 seq prokMSA_id:48487 delta clone BIrii41 2.28.4.6.3.9735 OTU 1 seq prokMSA_id:77008 delta clone JG37-AG-15 2.28.4.6.3.9755 OTU 1 seq prokMSA_id:79558 clone ZA3704c 2.28.4.6.3.9808 OTU 1 seq prokMSA_id:69926 clone TAF-A127 2.28.4.6.3.9820 OTU 1 seq prokMSA_id:79593 clone csbio160144 2.28.4.6.3.9861 OTU 1 seq prokMSA_id:71817 mle1-29 2.28.4.6.3.9874 OTU 1 seq prokMSA_id:76214 delta clone JG34-KF-243 2.28.4.6.3.9900 OTU 1 seq prokMSA_id:45556 mle1-27 2.28.4.6.3.9912 OTU 1 seq prokMSA_id:75552 delta clone JG34-KF-14 2.28.4.6.3.9970 OTU 1 seq prokMSA_id:70239 Polyangium cellulosum strain NUST_6 2.28.4.7 DESULFUROMONAS_GROUP 170 seqs 2.28.4.7.1 PEB.ACETYLENICUS_SUBGROUP 93 seqs 2.28.4.7.1.10026 OTU 1 seq prokMSA_id:79310 Desulfuromonas sp. clone AKS67 2.28.4.7.1.10015 OTU 1 seq prokMSA_id:54232 delta MERTZ_0CM_59 2.28.4.7.1.10027 OTU 1 seq prokMSA_id:79161 Cytophaga sp. Dex80-43 strain Dex80-43 2.28.4.7.1.10018 OTU 1 seq prokMSA_id:52634 delta MERTZ_2CM_249 2.28.4.7.1.10049 OTU 1 seq prokMSA_id:66925 clone SHA-72 2.28.4.7.1.10082 OTU 1 seq prokMSA_id:76933 delta clone JG37-AG-33 2.28.4.7.1.10081 OTU 2 seqs prokMSA_id:41059 Desulfuromonas michiganensis strain BB1 prokMSA_id:51450 Desulfuromonas michiganensis strain BRS1 2.28.4.7.1.10040 OTU 1 seq prokMSA_id:17883 clone d038R 2.28.4.7.1.10048 OTU 1 seq prokMSA_id:16746 Rhizosphere soil clone RSC-II-6 2.28.4.7.1.10095 OTU 1 seq prokMSA_id:78716 Desulfuromonas sp. clone LH2_14 2.28.4.7.1.10127 OTU 1 seq prokMSA_id:10659 clone ACE-44 2.28.4.7.1.10126 OTU 1 seq prokMSA_id:10658 Malonomonas rubra str. GraMal1 DSM 5091 2.28.4.7.1.10093 OTU 1 seq prokMSA_id:17185 delta MERTZ_2CM_61 2.28.4.7.1.10131 OTU 4 seqs prokMSA_id:10660 Desulfuromusa bakii str. Gyprop DSM 7345 prokMSA_id:10692 Desulfuromusa succinoxidans str. Gylac DSM 8270 prokMSA_id:10695 Desulfuromusa kysingii str. Kysw2 DSM 7343 prokMSA_id:18366 delta clone d1 2.28.4.7.1.10147 OTU 1 seq prokMSA_id:10661 clone Sva0853 2.28.4.7.1.10161 OTU 1 seq prokMSA_id:10662 Desulfuromonas palmitatis str. SDBY1 ATCC 51701 2.28.4.7.1.10167 OTU 1 seq prokMSA_id:72297 delta MERTZ_0CM_142 2.28.4.7.1.10145 OTU 1 seq prokMSA_id:35746 delta MERTZ_2CM_117 2.28.4.7.1.10206 OTU 1 seq prokMSA_id:10673 clone OPS22 2.28.4.7.1.10211 OTU 1 seq prokMSA_id:10676 clone CLEAR-19 2.28.4.7.1.10227 OTU 1 seq prokMSA_id:80396 clone Bol11 2.28.4.7.1.10198 OTU 1 seq prokMSA_id:10671 clone PENDANT-34 2.28.4.7.1.10218 OTU 1 seq prokMSA_id:39191 delta MERTZ_21CM_402 2.28.4.7.1.10213 OTU 1 seq prokMSA_id:10678 clone BPC076 2.28.4.7.1.10254 OTU 1 seq prokMSA_id:75874 clone Sh765B-TzT-35 2.28.4.7.1.10255 OTU 1 seq prokMSA_id:44979 SY6-56 2.28.4.7.1.10324 OTU 2 seqs prokMSA_id:10683 Pelobacter carbinolicus str. GraBd1 DSM 2380 prokMSA_id:10685 Pelobacter carbinolicus str. GraBd1 DSM 2380 2.28.4.7.1.10283 OTU 1 seq prokMSA_id:72950 delta isolate SB-24e1E8 2.28.4.7.1.10330 OTU 1 seq prokMSA_id:62663 Verrucomicrobia clone ML635J-58 2.28.4.7.1.10346 OTU 1 seq prokMSA_id:46410 delta TIHP368-09 2.28.4.7.1.10336 OTU 1 seq prokMSA_id:47900 clone Car7ra 2.28.4.7.1.10380 OTU 1 seq prokMSA_id:10681 clone Sva0485 2.28.4.7.1.9662 OTU 5 seqs prokMSA_id:60573 clone B83 prokMSA_id:83585 planctomycete clone CY0ARA032E06 of environmental sample of prokMSA_id:83983 planctomycete clone CY0ARA025H04 of environmental sample of prokMSA_id:84726 planctomycete clone CY0ARA025G12 of environmental sample of prokMSA_id:85518 planctomycete clone CY0ARA031D04 of environmental sample of 2.28.4.7.1.9666 OTU 2 seqs prokMSA_id:66635 delta clone 8-42 prokMSA_id:78077 delta clone Hyd89-13 2.28.4.7.1.9672 OTU 1 seq prokMSA_id:24509 Entotheonella palauensis 2.28.4.7.1.9676 OTU 1 seq prokMSA_id:76001 delta clone JG37-AG-140 2.28.4.7.1.9686 OTU 1 seq prokMSA_id:20650 planctomycete MERTZ_21CM_213 2.28.4.7.1.9694 OTU 1 seq prokMSA_id:79353 clone ZA2615c 2.28.4.7.1.9704 OTU 1 seq prokMSA_id:79502 Cytophaga sp. Dex80-64 strain Dex80-64 2.28.4.7.1.9726 OTU 1 seq prokMSA_id:48488 planctomycete MERTZ_21CM_160 2.28.4.7.1.9728 OTU 10 seqs prokMSA_id:10663 clone Sva1034 prokMSA_id:10664 clone Sva1033 prokMSA_id:10665 clone Sva0566 prokMSA_id:10666 clone Sva0556 prokMSA_id:28844 delta clone 296 AF369728 prokMSA_id:48291 Pelobacter sp. clone A3b3 prokMSA_id:78867 Desulfuromonas sp. clone SB2_81 prokMSA_id:78882 Desulfuromonas sp. clone SB2_94 prokMSA_id:80275 clone Bol29 prokMSA_id:93664 clone P8-GEN-10 AY361922 2.28.4.7.1.9760 OTU 1 seq prokMSA_id:63116 clone MB-A2-137 2.28.4.7.1.9759 OTU 1 seq prokMSA_id:10680 str. JTB38 2.28.4.7.1.9768 OTU 1 seq prokMSA_id:16373 delta CE49 2.28.4.7.1.9767 OTU 1 seq prokMSA_id:10682 clone Sva0679 2.28.4.7.1.9772 OTU 2 seqs prokMSA_id:30059 Arctic95B-14 AF355055 prokMSA_id:33009 Verrucomicrobia Arctic95B-10 2.28.4.7.1.9770 OTU 1 seq prokMSA_id:19507 delta MERTZ_2CM_75 2.28.4.7.1.9779 OTU 1 seq prokMSA_id:10684 Desulfuromonas acetexigens DSM 1397 2.28.4.7.1.9787 OTU 1 seq prokMSA_id:10687 clone HstpL86 2.28.4.7.1.9783 OTU 1 seq prokMSA_id:10686 Pelobacter acidigallici str. MaGa12 DSM 2377 2.28.4.7.1.9784 OTU 1 seq prokMSA_id:78912 Desulfuromonadales 2.28.4.7.1.9790 OTU 2 seqs prokMSA_id:50443 clone 33-PA95B98 AF469370 prokMSA_id:74843 delta clone P. palm C/A 79 2.28.4.7.1.9795 OTU 1 seq prokMSA_id:10689 str. BD2-3 2.28.4.7.1.9798 OTU 1 seq prokMSA_id:76094 delta clone GuBH2-AD/TzT-67 2.28.4.7.1.9805 OTU 1 seq prokMSA_id:21898 delta MERTZ_0CM_327 2.28.4.7.1.9825 OTU 1 seq prokMSA_id:10691 str. JTB36 2.28.4.7.1.9823 OTU 1 seq prokMSA_id:10690 str. BD3-7 2.28.4.7.1.9853 OTU 1 seq prokMSA_id:16727 delta MERTZ_2CM_36 2.28.4.7.1.9864 OTU 1 seq prokMSA_id:75261 delta clone JG37-AG-133 2.28.4.7.1.9876 OTU 1 seq prokMSA_id:63111 clone MB-B2-106 2.28.4.7.1.9884 OTU 1 seq prokMSA_id:63329 clone RCP2-62 2.28.4.7.1.9937 OTU 1 seq prokMSA_id:29670 delta isolate SB-24e1D6 2.28.4.7.1.9960 OTU 1 seq prokMSA_id:43402 clone Car102rb 2.28.4.7.1.9968 OTU 1 seq prokMSA_id:77161 delta ML1218M-7 2.28.4.7.1.9979 OTU 1 seq prokMSA_id:72784 isolate C1_B041 2.28.4.7.1.9983 OTU 4 seqs prokMSA_id:25416 delta MERTZ_21CM_326 prokMSA_id:37225 delta MERTZ_21CM_313 AF424258 prokMSA_id:71000 delta isolate Eel-TE1A4 prokMSA_id:73726 delta isolate Eel-TE1A11 AF354153 2.28.4.7.1.9993 OTU 3 seqs prokMSA_id:31035 Rhizosphere soil clone RSC-II-54 AJ252685 prokMSA_id:35486 Agricultural soil clone SC-I-29 prokMSA_id:75356 alpha clone GR10 2.28.4.7.2 DSM.ACETOXIDANS_SUBGROUP 12 seqs 2.28.4.7.2.10020 OTU 1 seq prokMSA_id:76391 delta clone GuBH2-AG-114 2.28.4.7.2.10129 OTU 1 seq prokMSA_id:23042 RFLP105 2.28.4.7.2.10084 OTU 2 seqs prokMSA_id:56683 clone AS6 prokMSA_id:58310 clone BA9 2.28.4.7.2.10146 OTU 1 seq prokMSA_id:25981 delta MERTZ_0CM_103 2.28.4.7.2.10185 OTU 1 seq prokMSA_id:10704 clone Sva0590 2.28.4.7.2.10307 OTU 1 seq prokMSA_id:35822 delta clone d13 2.28.4.7.2.9812 OTU 1 seq prokMSA_id:24543 Green Bay ferromanganous micronodule MND4 2.28.4.7.2.9835 OTU 1 seq prokMSA_id:10699 Desulfuromonas thiophila str. NZ27 DSMZ 8987 2.28.4.7.2.9908 OTU 1 seq prokMSA_id:10700 clone vadinHA49 2.28.4.7.2.9924 OTU 1 seq prokMSA_id:10703 str. 32.a 2.28.4.7.2.9921 OTU 1 seq prokMSA_id:10701 str. 09.96.18 2.28.4.7.4 GBC.METALLIREDUCENS_SUBGROUP 65 seqs 2.28.4.7.4.10008 OTU 1 seq prokMSA_id:20001 TA11 2.28.4.7.4.10021 OTU 1 seq prokMSA_id:75593 delta clone Sh765B-TzT-29 2.28.4.7.4.10013 OTU 1 seq prokMSA_id:67796 isolate a2b027 2.28.4.7.4.10076 OTU 1 seq prokMSA_id:60598 clone G13 2.28.4.7.4.10053 OTU 2 seqs prokMSA_id:16622 Nitrospira group MERTZ_2CM_68 prokMSA_id:30263 MERTZ_0CM_292 2.28.4.7.4.10180 OTU 1 seq prokMSA_id:48147 sludge H16 2.28.4.7.4.10179 OTU 1 seq prokMSA_id:10719 clone SJA-111 2.28.4.7.4.10165 OTU 1 seq prokMSA_id:10710 clone CLEAR-32 2.28.4.7.4.10176 OTU 1 seq prokMSA_id:10717 clone RB28 2.28.4.7.4.10177 OTU 1 seq prokMSA_id:10718 clone SJA-51 2.28.4.7.4.10174 OTU 1 seq prokMSA_id:10715 clone RB17 2.28.4.7.4.10171 OTU 1 seq prokMSA_id:62404 delta clone FTLM111 2.28.4.7.4.10166 OTU 1 seq prokMSA_id:10714 Pelobacter propionicus str. OttBd1 DSM 2379 2.28.4.7.4.10219 OTU 1 seq prokMSA_id:38392 WCHB1-27 2.28.4.7.4.10197 OTU 1 seq prokMSA_id:10720 clone SJA-152 2.28.4.7.4.10207 OTU 2 seqs prokMSA_id:10725 Geobacter sp. str. Ala-5. AF019928 prokMSA_id:10726 Geobacter sp. str. Ala-6 2.28.4.7.4.10216 OTU 1 seq prokMSA_id:10729 Geobacter akaganeitreducens str. Dfr2 2.28.4.7.4.10209 OTU 1 seq prokMSA_id:10728 Geobacter arculus str. Dfr1 2.28.4.7.4.10205 OTU 1 seq prokMSA_id:10724 clone GCA047 2.28.4.7.4.10210 OTU 1 seq prokMSA_id:29359 delta MERTZ_0CM_49 2.28.4.7.4.10224 OTU 1 seq prokMSA_id:10733 Geobacter sp. str. CdA-2 2.28.4.7.4.10190 OTU 1 seq prokMSA_id:26084 clone TDC-029 2.28.4.7.4.10204 OTU 1 seq prokMSA_id:10722 clone CLEAR-9 2.28.4.7.4.10182 OTU 1 seq prokMSA_id:47124 TA13 2.28.4.7.4.10272 OTU 1 seq prokMSA_id:22312 TA15 2.28.4.7.4.10321 OTU 1 seq prokMSA_id:41174 delta clone:TYM--13 2.28.4.7.4.10326 OTU 1 seq prokMSA_id:74740 FukuN110 2.28.4.7.4.10288 OTU 4 seqs prokMSA_id:10709 Geobacter metallireducens str. GS-15 ATCC 53774 prokMSA_id:22464 Geobacter grbicium strain TACP-2 complete AF335182 prokMSA_id:29370 Geobacter grbicium strain TACP-5 complete AF335183 prokMSA_id:95149 Geobacter metallireducens Gmet_14 whole genome shotgun NZ_AA 2.28.4.7.4.10287 OTU 1 seq prokMSA_id:29943 clone KS47 2.28.4.7.4.10335 OTU 1 seq prokMSA_id:71269 TA16 2.28.4.7.4.9663 OTU 4 seqs prokMSA_id:74078 delta isolate Eel-TE1B1 prokMSA_id:77835 delta clone Hyd89-19 AJ535233 prokMSA_id:77896 delta clone Hyd89-52 prokMSA_id:78341 delta clone Hyd89-66 2.28.4.7.4.9701 OTU 1 seq prokMSA_id:32027 Trichlorobacter thiogenes 2.28.4.7.4.9723 OTU 1 seq prokMSA_id:34143 SHA-207 2.28.4.7.4.9731 OTU 1 seq prokMSA_id:76056 delta clone JG37-AG-90 2.28.4.7.4.9733 OTU 1 seq prokMSA_id:79548 clone ZA3735c 2.28.4.7.4.9749 OTU 1 seq prokMSA_id:28314 delta MERTZ_2CM_331 2.28.4.7.4.9751 OTU 1 seq prokMSA_id:61837 delta clone CLi130 2.28.4.7.4.9758 OTU 1 seq prokMSA_id:18006 Metal-contaminated soil clone K20-79 2.28.4.7.4.9782 OTU 1 seq prokMSA_id:79712 candidate division OP10 clone S1a-1H 2.28.4.7.4.9786 OTU 1 seq prokMSA_id:16378 delta MERTZ_2CM_70 2.28.4.7.4.9791 OTU 1 seq prokMSA_id:37152 Banisveld landfill BVB45 2.28.4.7.4.9806 OTU 1 seq prokMSA_id:19377 delta MERTZ_2CM_138 2.28.4.7.4.9819 OTU 1 seq prokMSA_id:29387 TA14 2.28.4.7.4.9827 OTU 1 seq prokMSA_id:48265 Metal-contaminated soil clone K20-06 2.28.4.7.4.9845 OTU 1 seq prokMSA_id:75884 delta clone JG37-AG-128 2.28.4.7.4.9850 OTU 2 seqs prokMSA_id:10735 Geobacter sulfurreducens str. PCA ATCC 51573 prokMSA_id:34292 clone d006 2.28.4.7.4.9858 OTU 1 seq prokMSA_id:49070 #0319-6G20 2.28.4.7.4.9859 OTU 1 seq prokMSA_id:16437 delta MERTZ_0CM_225 2.28.4.7.4.9875 OTU 1 seq prokMSA_id:71753 isolate CS_B022 2.28.4.7.4.9898 OTU 1 seq prokMSA_id:62391 delta clone FTLM68 2.28.4.7.4.9910 OTU 1 seq prokMSA_id:30882 delta MERTZ_2CM_306 2.28.4.7.4.9911 OTU 1 seq prokMSA_id:20323 delta MERTZ_21CM_270 2.28.4.7.4.9932 OTU 1 seq prokMSA_id:10708 Geobacter sp. str. CdA-3 2.28.4.7.4.9956 OTU 1 seq prokMSA_id:63255 clone FW140 2.28.4.7.4.9959 OTU 1 seq prokMSA_id:63259 clone FW110 2.28.4.7.4.9985 OTU 1 seq prokMSA_id:48355 Banisveld landfill BVA59 2.28.4.8 BDE.BACTERIOVORUS_GROUP 23 seqs 2.28.4.8.10036 OTU 18 seqs prokMSA_id:24625 Bdellovibrio strain HD 127 DSM 50708 AJ292760 prokMSA_id:38436 Bdellovibrio strain SRE7 prokMSA_id:39664 Bdellovibrio strain DSM 50705 prokMSA_id:40800 Bdellovibrio strain HD 100 DSM 50701 AJ292759 prokMSA_id:40880 Bdellovibrio strain 100 AF084850 prokMSA_id:44877 Bdellovibrio strain E AF084851 prokMSA_id:67144 Bdellovibrio AY094129 prokMSA_id:67148 Bdellovibrio AY094127 prokMSA_id:67149 Bdellovibrio AY094126 prokMSA_id:67150 Bdellovibrio sp. Vietnam AY094123 prokMSA_id:67151 Bdellovibrio sp. P AY094121 prokMSA_id:67152 Bdellovibrio AY094125 prokMSA_id:67153 Bdellovibrio sp. Tu-113 AY094122 prokMSA_id:67155 Bdellovibrio AY094124 prokMSA_id:67162 Bdellovibrio sp. Hefner AY094114 prokMSA_id:67164 Bdellovibrio sp. ARL-12 AY094109 prokMSA_id:67170 Bdellovibrio sp. albina1 AY094107 prokMSA_id:67176 Bdellovibrio sp. 6-5-S AY094106 2.28.4.8.9718 OTU 1 seq prokMSA_id:16939 Bdellovibrio strain SRA9 2.28.4.8.9851 OTU 1 seq prokMSA_id:38566 Bdellovibrio sp. W strain ATCC 27047 2.28.4.8.9863 OTU 1 seq prokMSA_id:74869 Bdellovibrio strain TRA2 2.28.4.8.9996 OTU 2 seqs prokMSA_id:30112 Bdellovibrio strain BRP4 prokMSA_id:49295 Bdellovibrio strain BEP2 2.28.4.10 DESULFOBULBUS_ASSEMBLAGE 63 seqs 2.28.4.10.10030 OTU 1 seq prokMSA_id:36463 UASB_TL11 complete 2.28.4.10.10024 OTU 1 seq prokMSA_id:67799 isolate a2b025 2.28.4.10.10003 OTU 1 seq prokMSA_id:73225 Desulfacinum sp. M40/2 CIV-2.3 2.28.4.10.10100 OTU 1 seq prokMSA_id:33960 sulphate reducing DSB-DSa99-7 2.28.4.10.10110 OTU 1 seq prokMSA_id:41991 clone clB74 2.28.4.10.10112 OTU 2 seqs prokMSA_id:55923 clone NOS7.157WL prokMSA_id:82212 clone KD8-84 2.28.4.10.10111 OTU 1 seq prokMSA_id:74022 a2b033 2.28.4.10.10208 OTU 1 seq prokMSA_id:28552 Desulfacinum subterraneum 2.28.4.10.10221 OTU 1 seq prokMSA_id:77318 clone R3p4 2.28.4.10.10215 OTU 1 seq prokMSA_id:31004 Btol 2.28.4.10.10184 OTU 1 seq prokMSA_id:77292 clone R1p32 2.28.4.10.10240 OTU 1 seq prokMSA_id:25647 a2b002 2.28.4.10.10243 OTU 1 seq prokMSA_id:42281 Nitrospira sp. clone 4-29 2.28.4.10.10251 OTU 2 seqs prokMSA_id:10760 str. PRTOL1 prokMSA_id:10761 unnamed organism 2.28.4.10.10274 OTU 1 seq prokMSA_id:10750 Syntrophobacter wolinii 2.28.4.10.10277 OTU 1 seq prokMSA_id:10752 Syntrophobacter fumaroxidans str. MPOB DSM 10017 2.28.4.10.10278 OTU 1 seq prokMSA_id:10753 clone SJA-172 2.28.4.10.10302 OTU 1 seq prokMSA_id:38917 a1b020 2.28.4.10.10294 OTU 1 seq prokMSA_id:70282 Desulfacinum hydrothermale 2.28.4.10.10282 OTU 1 seq prokMSA_id:41839 Sulfate-reducing strain STP34 2.28.4.10.10285 OTU 2 seqs prokMSA_id:30060 Desulfomonile limimaris prokMSA_id:36808 Desulfomonile limimaris 2.28.4.10.10280 OTU 1 seq prokMSA_id:10755 Syntrophobacter sp 2.28.4.10.10284 OTU 2 seqs prokMSA_id:33846 sulphate reducing DSB-DSa99-9 prokMSA_id:72386 sulphate reducing DSB-DSa99-10 2.28.4.10.10357 OTU 1 seq prokMSA_id:16334 delta n30r 2.28.4.10.10368 OTU 3 seqs prokMSA_id:25091 Desulfomonile sp. clone 651 prokMSA_id:39526 Desulfomonile sp. clone 650 prokMSA_id:42269 Desulfomonile sp. clone 624 2.28.4.10.10381 OTU 2 seqs prokMSA_id:10781 clone WFeA1-10. AF050537 prokMSA_id:63265 clone FW133 2.28.4.10.9661 OTU 2 seqs prokMSA_id:66902 clone SHD-1 prokMSA_id:77303 K-4b1 2.28.4.10.9678 OTU 1 seq prokMSA_id:63331 clone RCP1-85 2.28.4.10.9687 OTU 1 seq prokMSA_id:36814 Thermodesulforhabdus sp. nov. M40/2 CIV-3.2 2.28.4.10.9693 OTU 1 seq prokMSA_id:71864 Desulfoarculus baarsii DSM 2075 2.28.4.10.9729 OTU 1 seq prokMSA_id:41940 Thermus sp. clone 2.28.4.10.9763 OTU 1 seq prokMSA_id:55539 delta clone SLM-DSBAC-74 2.28.4.10.9780 OTU 1 seq prokMSA_id:48894 sulphate reducing DSB-DSa99-8 2.28.4.10.9799 OTU 1 seq prokMSA_id:22050 sulphate reducing DSB-DSa99-5 2.28.4.10.9800 OTU 2 seqs prokMSA_id:63260 clone FW57 prokMSA_id:75569 clone JG36-TzT-55 2.28.4.10.9846 OTU 1 seq prokMSA_id:10756 clone Sva0812b 2.28.4.10.9848 OTU 1 seq prokMSA_id:10759 Desulforhabdus amnigenus str. ASRB1 2.28.4.10.9865 OTU 1 seq prokMSA_id:10778 clone WsCH54 2.28.4.10.9917 OTU 3 seqs prokMSA_id:10763 clone OPB33. AF026987 prokMSA_id:10764 clone OPB8. AF026988 prokMSA_id:10765 clone OPB78 2.28.4.10.9938 OTU 1 seq prokMSA_id:42456 clone clB10 2.28.4.10.9948 OTU 1 seq prokMSA_id:10772 clone OPT56 2.28.4.10.9946 OTU 1 seq prokMSA_id:10770 clone OPT47 2.28.4.10.9947 OTU 1 seq prokMSA_id:10771 clone OPB16 2.28.4.10.9949 OTU 1 seq prokMSA_id:10775 Desulfoarculus BG74 str. BG74 2.28.4.10.9951 OTU 1 seq prokMSA_id:63250 clone FW13 2.28.4.10.9961 OTU 1 seq prokMSA_id:10777 clone HstpL68 2.28.4.10.9975 OTU 1 seq prokMSA_id:59898 delta clone ccslm247 2.28.4.10.9978 OTU 1 seq prokMSA_id:66926 clone SHA-50 2.28.4.10.9982 OTU 3 seqs prokMSA_id:50160 delta MERTZ_2CM_7 prokMSA_id:51575 delta MERTZ_2CM_165 prokMSA_id:78365 delta clone Hyd89-23 AJ535245 2.28.4.10.9986 OTU 1 seq prokMSA_id:10782 clone BURTON-8 2.28.4.11 DBB.PROPIONICUS_ASSEMBLAGE 103 seqs 2.28.4.11.10032 OTU 3 seqs prokMSA_id:19356 clone GOUTA17 prokMSA_id:59934 clone ccs202 prokMSA_id:62385 delta clone FTLpost26 2.28.4.11.10047 OTU 4 seqs prokMSA_id:69919 isolate a1b009 prokMSA_id:71031 isolate a2b016 prokMSA_id:77915 delta clone Hyd24-08 prokMSA_id:77927 delta clone Hyd89-40 2.28.4.11.10062 OTU 7 seqs prokMSA_id:67777 isolate C1_B030 prokMSA_id:73292 isolate C1_B040 prokMSA_id:77746 delta clone Hyd01-30 prokMSA_id:77788 delta clone Hyd01-07 prokMSA_id:78284 delta clone Hyd01-17 prokMSA_id:78398 delta clone Hyd24-11 prokMSA_id:78851 Desulforhopalus sp. clone SB1_46 AY177789 2.28.4.11.10118 OTU 1 seq prokMSA_id:63781 Verrucomicrobia clone LD1-PA38 2.28.4.11.10097 OTU 1 seq prokMSA_id:79377 sequences clone: IndB2-42 2.28.4.11.10107 OTU 1 seq prokMSA_id:77940 delta clone Hyd24-30 2.28.4.11.10154 OTU 2 seqs prokMSA_id:36010 delta clone ST-12K13 AJ347756 prokMSA_id:84621 delta clone DBBB-70 2.28.4.11.10172 OTU 2 seqs prokMSA_id:41043 Desulfobulbus sp. oral clone R004 prokMSA_id:47698 Desulfobulbus sp. oral clone CH031 2.28.4.11.10159 OTU 1 seq prokMSA_id:46630 sulfate-reducing clone:39B 2.28.4.11.10133 OTU 1 seq prokMSA_id:42347 Desulfobulbus sp. 'McCal 25m' 2.28.4.11.10200 OTU 1 seq prokMSA_id:10819 str. LSv54 2.28.4.11.10199 OTU 1 seq prokMSA_id:10818 str. LSv514 2.28.4.11.10220 OTU 1 seq prokMSA_id:26233 delta MERTZ_21CM_386 2.28.4.11.10187 OTU 1 seq prokMSA_id:62717 delta clone ML623J-57 2.28.4.11.10191 OTU 1 seq prokMSA_id:67800 isolate a1b003 2.28.4.11.10202 OTU 1 seq prokMSA_id:47136 delta MERTZ_2CM_141 2.28.4.11.10236 OTU 1 seq prokMSA_id:10794 Desulfocapsa sulfoexigens str. SB164P1 2.28.4.11.10258 OTU 1 seq prokMSA_id:71200 delta isolate Eel-TE1B5 2.28.4.11.10235 OTU 1 seq prokMSA_id:10793 clone WCHB1-67 2.28.4.11.10242 OTU 1 seq prokMSA_id:78670 Desulfocapsa sp. clone SB1_88 2.28.4.11.10303 OTU 1 seq prokMSA_id:34639 delta MERTZ_2CM_46 2.28.4.11.10300 OTU 9 seqs prokMSA_id:10792 Desulfocapsa thiozymogenes str. Bra2 DSM 7269 prokMSA_id:10797 clone 113. AJ389623 prokMSA_id:10800 clone 282 prokMSA_id:10801 clone 330. AJ389627 prokMSA_id:10802 clone 348 prokMSA_id:10803 clone 368 prokMSA_id:69671 Desulfocapsa sp. Cad626 prokMSA_id:81455 Desulfocapsa sp. clone BIOEST-35 prokMSA_id:90670 clone ZB1 AY327185 2.28.4.11.10299 OTU 1 seq prokMSA_id:44862 ODPB-B4 2.28.4.11.10316 OTU 1 seq prokMSA_id:26125 clone 33-PA52B00 2.28.4.11.10311 OTU 1 seq prokMSA_id:79101 Cytophaga sp. BHI60-57B strain BHI60-57B 2.28.4.11.10367 OTU 1 seq prokMSA_id:10820 str. BD7-15 2.28.4.11.10328 OTU 2 seqs prokMSA_id:10787 Desulfobulbus elongatus str. FP DSM 2908 prokMSA_id:77552 clone R1p15 2.28.4.11.10355 OTU 1 seq prokMSA_id:10811 Desulfobacterium catecholicum DSM 3882 2.28.4.11.10329 OTU 1 seq prokMSA_id:39590 delta SA82 2.28.4.11.10332 OTU 7 seqs prokMSA_id:10815 str. LSv53 prokMSA_id:10816 str. LSv23 prokMSA_id:10817 str. LSv24 prokMSA_id:10821 str. JTB20 prokMSA_id:10828 str. LSv53 prokMSA_id:78896 Desulforhopalus sp. clone SB1_78 prokMSA_id:78959 Desulforhopalus sp. clone SB4_58 2.28.4.11.10371 OTU 2 seqs prokMSA_id:77808 delta clone Hyd24-21 prokMSA_id:78211 delta clone Hyd01-14 2.28.4.11.10378 OTU 1 seq prokMSA_id:10827 clone Sva0999 2.28.4.11.10377 OTU 2 seqs prokMSA_id:10822 clone Sva0113. AJ240982 prokMSA_id:10826 clone Sva0754 2.28.4.11.9660 OTU 3 seqs prokMSA_id:10809 Desulforhopalus vacuolatus str. ltk10 prokMSA_id:10814 Desulforhopalus LSv20 str. LSv20 prokMSA_id:72238 Desulforhopalus vacuolatus L42613 2.28.4.11.9673 OTU 1 seq prokMSA_id:10834 str. NKB13 2.28.4.11.9674 OTU 1 seq prokMSA_id:21964 delta MERTZ_2CM_340 2.28.4.11.9695 OTU 3 seqs prokMSA_id:10796 clone 22. AJ389622 prokMSA_id:10798 clone 141 prokMSA_id:40598 mRNA clone sipK93 2.28.4.11.9705 OTU 1 seq prokMSA_id:77760 delta clone Hyd01-n 2.28.4.11.9738 OTU 1 seq prokMSA_id:71121 delta isolate Eel-BE1A3 2.28.4.11.9734 OTU 4 seqs prokMSA_id:61880 delta clone R103-B13 prokMSA_id:61881 delta clone R103-B27 prokMSA_id:61882 delta clone R103-B54 AF449227 prokMSA_id:61884 delta clone R103-B53 AF449226 2.28.4.11.9741 OTU 1 seq prokMSA_id:76068 delta clone JG37-AG-30 2.28.4.11.9739 OTU 2 seqs prokMSA_id:77619 delta clone Hyd89-51 prokMSA_id:78189 delta clone Hyd89-08 2.28.4.11.9743 OTU 1 seq prokMSA_id:70322 Psychrophilic sulfate-reducing LSv22 2.28.4.11.9746 OTU 1 seq prokMSA_id:74052 delta isolate Eel-36e1D7 2.28.4.11.9756 OTU 1 seq prokMSA_id:10825 clone Sva0443 2.28.4.11.9775 OTU 1 seq prokMSA_id:10829 Desulfobulbus rhabdoformis str. M16 DSM 8777 2.28.4.11.9807 OTU 1 seq prokMSA_id:10830 Desulfobulbus BG25 str. BG25 2.28.4.11.9817 OTU 1 seq prokMSA_id:10832 clone Sar276 2.28.4.11.9822 OTU 1 seq prokMSA_id:47606 delta MERTZ_2CM_260 2.28.4.11.9824 OTU 1 seq prokMSA_id:10837 clone Sva0631 2.28.4.11.9831 OTU 1 seq prokMSA_id:10839 Desulfofustis glycolicus str. PerGlyS 2.28.4.11.9837 OTU 1 seq prokMSA_id:34365 clone clB15 2.28.4.11.9857 OTU 1 seq prokMSA_id:10840 str. WH26 2.28.4.11.9856 OTU 4 seqs prokMSA_id:10790 clone Sva1035. AJ240966 prokMSA_id:10791 clone Sva1041 prokMSA_id:10833 str. BD1-2 prokMSA_id:10836 clone Sva0103 2.28.4.11.9871 OTU 2 seqs prokMSA_id:23990 Q3-6C17 AY048892 prokMSA_id:75871 delta clone JG37-AG-118 2.28.4.11.9891 OTU 1 seq prokMSA_id:10788 unnamed organism 2.28.4.11.9901 OTU 1 seq prokMSA_id:22073 Desulfobulbus sp. 'Ace 16m' 2.28.4.11.9907 OTU 1 seq prokMSA_id:80324 clone Bol88 2.28.4.11.9923 OTU 1 seq prokMSA_id:44052 GR-Sh2-18 clone GR-Sh2-18 2.28.4.11.9931 OTU 1 seq prokMSA_id:24902 clone Car93rb 2.28.4.11.9952 OTU 1 seq prokMSA_id:81065 clone KM85 2.28.4.12 SYNTROPHUS_GROUP 37 seqs 2.28.4.12.10034 OTU 1 seq prokMSA_id:10858 Syntrophus sp 2.28.4.12.10025 OTU 1 seq prokMSA_id:10859 Syntrophus sp 2.28.4.12.10033 OTU 1 seq prokMSA_id:10856 clone SCALE-11 2.28.4.12.10050 OTU 1 seq prokMSA_id:66927 clone SHA-51 2.28.4.12.10067 OTU 11 seqs prokMSA_id:18138 clone BA053 complete prokMSA_id:25179 clone BA003 complete AF323758 prokMSA_id:27573 clone BA039 complete prokMSA_id:32886 clone BA044 complete prokMSA_id:82811 Syntrophus sp. clone PD-UASB-35 prokMSA_id:83667 Syntrophus sp. clone PD-UASB-5 AY261816 prokMSA_id:84489 Syntrophus sp. clone PD-UASB-54 AY261817 prokMSA_id:85759 Syntrophus sp. clone PD-UASB-57 prokMSA_id:86627 Syntrophus sp. clone PD-UASB-40 AY261815 prokMSA_id:89665 clone TA55_Ba_114 AY297981 prokMSA_id:90620 clone TA55_Ba_133 AY297985 2.28.4.12.10094 OTU 2 seqs prokMSA_id:10844 Syntrophus buswellii str. DM-3 DSM 02612 prokMSA_id:10846 clone vadinBC38 2.28.4.12.10310 OTU 1 seq prokMSA_id:48781 TA07 2.28.4.12.10362 OTU 1 seq prokMSA_id:56266 clone SHA-79 2.28.4.12.9665 OTU 2 seqs prokMSA_id:10849 Syntrophus gentianae str. HQGoe1 DSM 8423 prokMSA_id:66928 clone SHA-42 2.28.4.12.9700 OTU 1 seq prokMSA_id:24941 UASB_TL12 complete 2.28.4.12.9762 OTU 1 seq prokMSA_id:34985 AT425_EubF5 2.28.4.12.9764 OTU 1 seq prokMSA_id:23625 clone p-4193-6Wa5 2.28.4.12.9842 OTU 3 seqs prokMSA_id:10853 clone 7 prokMSA_id:10860 Smithella propionica str. LYP prokMSA_id:77388 clone R4b16 2.28.4.12.9882 OTU 1 seq prokMSA_id:10845 clone SJA-63 2.28.4.12.9903 OTU 1 seq prokMSA_id:32779 RFLP40 2.28.4.12.9909 OTU 1 seq prokMSA_id:10854 Syntrophus ACE-34 2.28.4.12.9918 OTU 1 seq prokMSA_id:10855 Syntrophus ACE-20 2.28.4.12.9922 OTU 1 seq prokMSA_id:10857 Syntrophus sp 2.28.4.12.9930 OTU 1 seq prokMSA_id:71533 clone BA069 complete 2.28.4.12.9935 OTU 1 seq prokMSA_id:63262 clone FW117 2.28.4.12.9945 OTU 1 seq prokMSA_id:48110 BA18 2.28.4.12.9958 OTU 1 seq prokMSA_id:63258 clone FW99 2.28.4.12.9974 OTU 1 seq prokMSA_id:21347 delta clone 36-11 2.28.4.13 DESULFOBACTER_GROUP 261 seqs 2.28.4.13.1 DSF.LIMICOLA_SUBGROUP 153 seqs 2.28.4.13.1.10017 OTU 1 seq prokMSA_id:70417 delta isolate SB-24e1C6 2.28.4.13.1.10000 OTU 1 seq prokMSA_id:36298 delta MERTZ_2CM_224 2.28.4.13.1.10037 OTU 1 seq prokMSA_id:36468 delta MERTZ_2CM_195 2.28.4.13.1.10078 OTU 1 seq prokMSA_id:10872 clone ACE-32 2.28.4.13.1.10073 OTU 1 seq prokMSA_id:10875 unnamed organism 2.28.4.13.1.10116 OTU 1 seq prokMSA_id:29306 delta MERTZ_2CM_23 2.28.4.13.1.10115 OTU 1 seq prokMSA_id:10873 clone CLEAR-27 2.28.4.13.1.10114 OTU 1 seq prokMSA_id:10871 clone PENDANT-25 2.28.4.13.1.10103 OTU 1 seq prokMSA_id:10869 Desulfonema magnum str. Montpellier DSM 2077 2.28.4.13.1.10102 OTU 1 seq prokMSA_id:10867 Desulfocella halophila str. GSL-But2 2.28.4.13.1.10130 OTU 1 seq prokMSA_id:22240 clone Car148rc 2.28.4.13.1.10117 OTU 1 seq prokMSA_id:10876 str. S2551 2.28.4.13.1.10158 OTU 1 seq prokMSA_id:52002 RFLP25 2.28.4.13.1.10157 OTU 1 seq prokMSA_id:29555 delta MERTZ_21CM_196 2.28.4.13.1.10152 OTU 1 seq prokMSA_id:34381 clone Car99rb 2.28.4.13.1.10164 OTU 1 seq prokMSA_id:22644 delta MERTZ_2CM_229 2.28.4.13.1.10194 OTU 1 seq prokMSA_id:31848 Desulforegula conservatrix 2.28.4.13.1.10228 OTU 1 seq prokMSA_id:71766 delta isolate Eel-BE1B3 2.28.4.13.1.10183 OTU 1 seq prokMSA_id:23602 delta MERTZ_2CM_30 2.28.4.13.1.10267 OTU 1 seq prokMSA_id:77873 delta clone Hyd89-61 2.28.4.13.1.10268 OTU 1 seq prokMSA_id:71734 delta clone SLM-DSBAC-75 2.28.4.13.1.10256 OTU 1 seq prokMSA_id:81354 clone KM88 2.28.4.13.1.10276 OTU 1 seq prokMSA_id:50478 delta MERTZ_2CM_32 2.28.4.13.1.10305 OTU 3 seqs prokMSA_id:24500 sulphate reducing DSB-DSb99-2 prokMSA_id:39493 sulphate reducing DSB-DSb99-1 clone DSB-DSb99-1 AJ300507 prokMSA_id:41496 sulphate reducing DSB-DSa99-4 2.28.4.13.1.10293 OTU 1 seq prokMSA_id:47732 delta clone CD12B1 2.28.4.13.1.10304 OTU 1 seq prokMSA_id:26478 delta MERTZ_2CM_222 2.28.4.13.1.10325 OTU 1 seq prokMSA_id:35699 delta MERTZ_21CM_204 2.28.4.13.1.10301 OTU 1 seq prokMSA_id:45289 delta isolate Eel-36e1H1 2.28.4.13.1.10306 OTU 4 seqs prokMSA_id:10866 str. Pnd3 prokMSA_id:47033 Delta S2552 prokMSA_id:50635 Delta S2550 prokMSA_id:79514 Desulfobacillum aliphatovorans strain CV2803 2.28.4.13.1.10374 OTU 2 seqs prokMSA_id:20823 delta clone 224 prokMSA_id:34662 delta clone 53 2.28.4.13.1.10364 OTU 97 seqs prokMSA_id:10881 clone A52. U08394 prokMSA_id:10882 clone A34. U08389 prokMSA_id:10883 iron sulfide containing magnetotactic clone MMP1990 prokMSA_id:10884 iron sulfide containing magnetotactic clone MMP1991. L06457 prokMSA_id:32185 delta CE53 AF211261 prokMSA_id:33579 ODP8-U3 AF121085 prokMSA_id:36525 delta MERTZ_21CM_335 prokMSA_id:44649 CLEAR-29 AF146251 prokMSA_id:45852 delta MERTZ_21CM_410 AF424265 prokMSA_id:49238 Desulfonema CE101 prokMSA_id:56126 Tol-K-1 AB081545 prokMSA_id:59736 clone OB3_136 AY133458 prokMSA_id:59744 clone OB3_142 AY133452 prokMSA_id:59747 clone OB3_87 AY133451 prokMSA_id:61135 isolate MGP DGGE Band 24A AF530123 prokMSA_id:61137 isolate MGP DGGE Band 23 AF530122 prokMSA_id:61142 isolate MGP DGGE Band 19A AF530118 prokMSA_id:63569 clone:CS8.12 AB069803 prokMSA_id:71221 Oil-K-2 AB081535 prokMSA_id:72051 clone INOC-RNA22 AF360639 prokMSA_id:72104 delta isolate Eel-BE1B6 AF354146 prokMSA_id:93594 clone P8-GEO-4 AY361941 prokMSA_id:94313 delta clone PI_nr9_c4 AY374925 prokMSA_id:94314 delta clone PI_486_c7 AY374779 prokMSA_id:94325 delta clone PI_r142_c2 AY374937 prokMSA_id:94341 delta clone PI_r69_c2 AY374772 prokMSA_id:94354 delta clone PI_6RA09 AY374881 prokMSA_id:94365 delta clone PI_6L14 AY374661 prokMSA_id:94389 delta clone PI_6TC02 AY374893 prokMSA_id:94406 delta clone PI_6N83 AY374848 prokMSA_id:94421 delta clone PI_6EC11 AY374818 prokMSA_id:94423 delta clone PI_6M83 AY374830 prokMSA_id:94425 delta clone PI_r172_c2 AY374758 prokMSA_id:94427 delta clone PI_6UF01 AY374899 prokMSA_id:94434 delta clone PI_r95_c2 AY374776 prokMSA_id:94450 delta clone PI_r158_c2 AY374946 prokMSA_id:94454 delta clone PI_6AF12 AY374872 prokMSA_id:94458 delta clone PI_6L03 AY374831 prokMSA_id:94460 delta clone PI_6M43 AY374657 prokMSA_id:94472 delta clone PI_r64_c2 AY374770 prokMSA_id:94479 delta clone PI_6H73 AY374827 prokMSA_id:94507 delta clone PI_6G46 AY374684 prokMSA_id:94508 delta clone PI_nr15_c5 AY374787 prokMSA_id:94556 delta clone PI_6H43 AY374828 prokMSA_id:94567 delta clone PI_6AC11 AY374695 prokMSA_id:94576 delta clone PI_6AH10 AY374707 prokMSA_id:94585 delta clone PI_6UD06 AY374722 prokMSA_id:94594 delta clone PI_nr5_c15 AY374794 prokMSA_id:94611 delta clone PI_nn3_c2 AY374782 prokMSA_id:94626 delta clone PI_6Q89 AY374845 prokMSA_id:94647 delta clone PI_6BB03_D05 AY374860 prokMSA_id:94650 delta clone PI_6Q36 AY374851 prokMSA_id:94679 delta clone PI_r24_c4 AY374957 prokMSA_id:94689 delta clone PI_6RB07 AY374885 prokMSA_id:94738 delta clone PI_nr29_c4 AY374921 prokMSA_id:94743 delta clone PI_6AG06 AY374874 prokMSA_id:94745 delta clone PI_r91_c3 AY374809 prokMSA_id:94752 delta clone PI_r101_c2 AY374926 prokMSA_id:94762 delta clone PI_6UD08 AY374723 prokMSA_id:94793 delta clone PI_nn1_c2 AY374780 prokMSA_id:94795 delta clone PI_6BC12 AY374866 prokMSA_id:94804 delta clone PI_nr17_c3 AY374912 prokMSA_id:94806 delta clone PI_r68_c2 AY374974 prokMSA_id:94820 delta clone PI_r85_c2 AY374773 prokMSA_id:94831 delta clone PI_r107_c2 AY374741 prokMSA_id:94844 delta clone PI_6TE01 AY374898 prokMSA_id:94868 delta clone PI_r156_c2 AY374945 prokMSA_id:94872 delta clone PI_6VA09 AY374713 prokMSA_id:94887 delta clone PI_r73_c2 AY374976 prokMSA_id:94894 delta clone PI_6YE12 AY374824 prokMSA_id:94909 delta clone PI_6UB08 AY374886 prokMSA_id:94918 delta clone PI_r153_c2 AY374943 prokMSA_id:94952 delta clone PI_6Q05 AY374842 prokMSA_id:94956 delta clone PI_r51_c3 AY374969 prokMSA_id:94966 delta clone PI_6L60 AY374833 prokMSA_id:94974 delta clone PI_r99_c2 AY374778 prokMSA_id:94991 delta clone PI_r98_c2 AY374811 prokMSA_id:94995 delta clone PI_r21_c5 AY374956 prokMSA_id:95000 delta clone PI_6O16 AY374838 prokMSA_id:95004 delta clone PI_6VA11 AY374883 prokMSA_id:95011 delta clone PI_6G69 AY374852 prokMSA_id:95020 delta clone PI_r25_c5 AY374804 prokMSA_id:95023 delta clone PI_r41_c5 AY374805 prokMSA_id:95024 delta clone PI_r84_c2 AY374980 prokMSA_id:95028 delta clone PI_6G40 AY374856 prokMSA_id:95033 delta clone PI_nr5_c25 AY374795 prokMSA_id:95038 delta clone PI_6N19 AY374841 prokMSA_id:95039 delta clone PI_r83_c3 AY374807 prokMSA_id:95048 delta clone PI_6D81 AY374675 prokMSA_id:95087 delta clone PI_r45_c3 AY374966 prokMSA_id:95088 delta clone PI_6L27 AY374832 prokMSA_id:95092 delta clone PI_6O92 AY374834 prokMSA_id:95119 delta clone PI_r16_c5 AY374757 prokMSA_id:95141 delta clone PI_nr27_c3 AY374919 prokMSA_id:95143 delta clone PI_6BB04 AY374861 prokMSA_id:95145 delta clone PI_r46_c3 AY374967 prokMSA_id:95161 delta clone PI_6BD11 AY374870 2.28.4.13.1.10344 OTU 1 seq prokMSA_id:73235 isolate CS_B014 2.28.4.13.1.9685 OTU 1 seq prokMSA_id:18378 delta isolate Eel-36e1H6 2.28.4.13.1.9696 OTU 1 seq prokMSA_id:44839 delta MERTZ_2CM_190 2.28.4.13.1.9715 OTU 1 seq prokMSA_id:47815 delta MERTZ_2CM_130 2.28.4.13.1.9752 OTU 1 seq prokMSA_id:52376 sulphate reducing DSB-DSb99-3 2.28.4.13.1.9765 OTU 1 seq prokMSA_id:50014 delta DSS55 2.28.4.13.1.9776 OTU 1 seq prokMSA_id:24077 Desulfococcus multivorans DSM 2059 2.28.4.13.1.9797 OTU 1 seq prokMSA_id:69464 delta MT25 2.28.4.13.1.9810 OTU 1 seq prokMSA_id:38445 delta MERTZ_2CM_324 2.28.4.13.1.9821 OTU 1 seq prokMSA_id:37002 SY6-81 2.28.4.13.1.9818 OTU 1 seq prokMSA_id:81529 clone KM62 2.28.4.13.1.9887 OTU 1 seq prokMSA_id:26350 delta DSS5 2.28.4.13.1.9928 OTU 1 seq prokMSA_id:70799 delta isolate SB-24e1B12 2.28.4.13.1.9926 OTU 1 seq prokMSA_id:46593 Desulfococcus biacutus strain DSM 5651T 2.28.4.13.1.9969 OTU 1 seq prokMSA_id:35610 delta TK02 2.28.4.13.1.9971 OTU 2 seqs prokMSA_id:16532 delta MERTZ_2CM_220 prokMSA_id:36429 delta MERTZ_21CM_340 2.28.4.13.1.9981 OTU 1 seq prokMSA_id:51809 delta DSS7 2.28.4.13.1.9999 OTU 2 seqs prokMSA_id:78071 clone:Rs-J96 prokMSA_id:81819 clone: Rs-010 2.28.4.13.2 DSS.VARIABILIS_SUBGROUP 67 seqs 2.28.4.13.2.10004 OTU 2 seqs prokMSA_id:10897 Desulfonema ishimotoei str. from anaerobic mud of the intert prokMSA_id:10898 Desulfonema ishimotoei str. from anaerobic marine mud of Tok 2.28.4.13.2.10046 OTU 11 seqs prokMSA_id:10878 clone Sva0081 prokMSA_id:10879 clone Sva0863 prokMSA_id:10887 Desulfosarcina variabilis str. 3 be 13 Montpellier DSM 2060 prokMSA_id:10888 Desulfobacterium cetonicum str. oil recovery water DSM 7267 prokMSA_id:10889 str. oXyS1 prokMSA_id:10894 str. Hxd3. Y17698 prokMSA_id:19549 Olavius algarvensis sulfate-reducing endosymbiont prokMSA_id:67851 delta clone 44a-B1-10 prokMSA_id:78122 delta clone Hyd89-21 prokMSA_id:78353 delta clone Hyd89-63 prokMSA_id:78667 Desulfosarcina sp. clone SB4_53 2.28.4.13.2.10061 OTU 1 seq prokMSA_id:24313 delta MERTZ_21CM_413 2.28.4.13.2.10091 OTU 4 seqs prokMSA_id:21892 clone PCEDR694 prokMSA_id:24505 clone PCEDR702 prokMSA_id:39862 clone PCEDR691 prokMSA_id:51360 clone PCEDR13 2.28.4.13.2.10134 OTU 1 seq prokMSA_id:17347 delta MERTZ_2CM_274 2.28.4.13.2.10222 OTU 1 seq prokMSA_id:48164 delta DSS57 2.28.4.13.2.10257 OTU 1 seq prokMSA_id:10905 clone SB-29 2.28.4.13.2.10239 OTU 1 seq prokMSA_id:66102 delta clone:KU32 2.28.4.13.2.10266 OTU 1 seq prokMSA_id:45971 delta clone:TYM--12 2.28.4.13.2.10245 OTU 1 seq prokMSA_id:17424 Saltmarsh clone LCP-80 2.28.4.13.2.10265 OTU 1 seq prokMSA_id:35645 delta DSS1 2.28.4.13.2.10320 OTU 1 seq prokMSA_id:38237 clone Car95fb 2.28.4.13.2.10315 OTU 1 seq prokMSA_id:38926 delta SA56 2.28.4.13.2.10319 OTU 1 seq prokMSA_id:74021 delta clone SLM-CP-116 2.28.4.13.2.10342 OTU 1 seq prokMSA_id:39986 AT425_EubD9 2.28.4.13.2.10365 OTU 1 seq prokMSA_id:20214 delta MERTZ_2CM_176 2.28.4.13.2.10379 OTU 1 seq prokMSA_id:38404 clone GOUTB1 2.28.4.13.2.9675 OTU 1 seq prokMSA_id:10886 clone 2BP-6 2.28.4.13.2.9677 OTU 2 seqs prokMSA_id:28632 clone Car58fc prokMSA_id:37303 clone Car45fc 2.28.4.13.2.9681 OTU 1 seq prokMSA_id:65440 Delta EbS7 strain EbS7 2.28.4.13.2.9691 OTU 1 seq prokMSA_id:10890 str. mXyS 2.28.4.13.2.9697 OTU 1 seq prokMSA_id:10891 str. AK-01 2.28.4.13.2.9699 OTU 1 seq prokMSA_id:10893 clone vadinHA60 2.28.4.13.2.9702 OTU 1 seq prokMSA_id:10895 clone CLEAR-2 2.28.4.13.2.9703 OTU 1 seq prokMSA_id:43896 delta MERTZ_21CM_102 2.28.4.13.2.9706 OTU 1 seq prokMSA_id:10899 clone GCA017 2.28.4.13.2.9730 OTU 1 seq prokMSA_id:78733 Desulfosarcina sp. clone SB1_34 2.28.4.13.2.9771 OTU 1 seq prokMSA_id:27380 delta MERTZ_2CM_37 2.28.4.13.2.9793 OTU 1 seq prokMSA_id:34756 clone Car113fc 2.28.4.13.2.9794 OTU 1 seq prokMSA_id:40264 delta NaphS2 2.28.4.13.2.9813 OTU 3 seqs prokMSA_id:57453 delta clone P. palm A 205 prokMSA_id:67797 isolate a2b040 prokMSA_id:70385 isolate a2b020 2.28.4.13.2.9873 OTU 1 seq prokMSA_id:10900 str. PSv29 2.28.4.13.2.9880 OTU 1 seq prokMSA_id:10902 str. LSv21 2.28.4.13.2.9878 OTU 1 seq prokMSA_id:10901 str. ASv26 2.28.4.13.2.9885 OTU 1 seq prokMSA_id:10903 unnamed organism 2.28.4.13.2.9890 OTU 1 seq prokMSA_id:77960 delta clone:Rs-K70 2.28.4.13.2.9886 OTU 1 seq prokMSA_id:10904 clone SB-21 2.28.4.13.2.9893 OTU 1 seq prokMSA_id:52092 Bdellovibrio sp. AQ 2.28.4.13.2.9899 OTU 1 seq prokMSA_id:10906 clone SB-30 2.28.4.13.2.9897 OTU 1 seq prokMSA_id:82326 clone KM95 2.28.4.13.2.9904 OTU 1 seq prokMSA_id:10908 clone Sva0516 2.28.4.13.2.9913 OTU 1 seq prokMSA_id:63261 clone FW113 2.28.4.13.2.9916 OTU 1 seq prokMSA_id:10909 clone Sva0405 2.28.4.13.2.9925 OTU 1 seq prokMSA_id:78056 delta clone Hyd89-22 2.28.4.13.2.9942 OTU 1 seq prokMSA_id:16656 delta MERTZ_2CM_76 2.28.4.13.2.9939 OTU 1 seq prokMSA_id:70859 delta isolate Eel-36e1G12 2.28.4.13.2.9954 OTU 1 seq prokMSA_id:43483 delta MERTZ_21CM_256 2.28.4.13.2.9965 OTU 1 seq prokMSA_id:32846 delta isolate Eel-BE1C3 2.28.4.13.2.9964 OTU 1 seq prokMSA_id:41841 delta DSS63 2.28.4.13.2.9995 OTU 1 seq prokMSA_id:71994 Desulfomusa hansenii 2.28.4.13.7 DSB.POSTGATEI_SUBGROUP 41 seqs 2.28.4.13.7.10002 OTU 1 seq prokMSA_id:10934 Desulfobotulus BG14 str. BG14 2.28.4.13.7.10006 OTU 1 seq prokMSA_id:32393 delta clone Sva0605 2.28.4.13.7.10031 OTU 1 seq prokMSA_id:78513 Desulfobacula sp. clone SB1_49 2.28.4.13.7.10083 OTU 2 seqs prokMSA_id:67544 Desulfobacter latus strain DSM 3381 prokMSA_id:74171 Desulfobacter curvatus DSM 3379 2.28.4.13.7.10057 OTU 1 seq prokMSA_id:48770 delta MT22 2.28.4.13.7.10039 OTU 1 seq prokMSA_id:71601 Desulfobacterium autotrophicum DSM 3382 2.28.4.13.7.10072 OTU 2 seqs prokMSA_id:10923 Desulfobacter BG8 str. BG8 prokMSA_id:10924 Desulfobacter BG23 str. BG23 2.28.4.13.7.10136 OTU 2 seqs prokMSA_id:70182 isolate CS_B008 prokMSA_id:86333 clone B01R011 2.28.4.13.7.10148 OTU 7 seqs prokMSA_id:10929 str. S2651 prokMSA_id:31826 Desulfotignum balticum prokMSA_id:40669 CHA3-118 clone CHA3-118 prokMSA_id:51719 Desulfotignum balticum DSM 7044 prokMSA_id:52280 CHA3-100 clone CHA3-100 prokMSA_id:59113 Desulfotignum phosphitoxidans strain FiPS3 prokMSA_id:59114 Desulfotignum phosphitoxidans strain FiPS5 2.28.4.13.7.10226 OTU 1 seq prokMSA_id:10938 Desulfobacterium LSv25 str. LSv25 2.28.4.13.7.10252 OTU 1 seq prokMSA_id:10942 clone SB-9 2.28.4.13.7.10275 OTU 1 seq prokMSA_id:78421 Desulfobacteraceae 2.28.4.13.7.10323 OTU 1 seq prokMSA_id:10937 Desulfobacterium niacini str. PM4 2.28.4.13.7.9712 OTU 1 seq prokMSA_id:78718 Desulfobacula sp. clone SB4_98 2.28.4.13.7.9737 OTU 3 seqs prokMSA_id:10933 Desulfobacula toluolica str. Tol2 DSM 7467 prokMSA_id:10936 Desulfobacterium phenolicum str. marine mud DSM 3384 prokMSA_id:67542 Desulfobacula toluolica strain DSM 7467 2.28.4.13.7.9777 OTU 2 seqs prokMSA_id:84285 clone B04R008 prokMSA_id:86388 clone B01R004 2.28.4.13.7.9867 OTU 1 seq prokMSA_id:10922 Desulfobacter vibrioformis str. B54 DSMZ 8776 2.28.4.13.7.9877 OTU 1 seq prokMSA_id:10927 unnamed organism 2.28.4.13.7.9889 OTU 1 seq prokMSA_id:10928 Desulfobacter ASv25 str. ASv25 2.28.4.13.7.9892 OTU 1 seq prokMSA_id:28971 Delta S2450 2.28.4.13.7.9919 OTU 1 seq prokMSA_id:10939 str. JTB133 2.28.4.13.7.9915 OTU 1 seq prokMSA_id:10935 Desulfobacterium BG33 str. BG33 2.28.4.13.7.9941 OTU 1 seq prokMSA_id:10940 Desulfospira joergensenii str. B331 DSM 10085 2.28.4.13.7.9943 OTU 1 seq prokMSA_id:10941 Desulfobacterium BG18 str. BG18 2.28.4.13.7.9940 OTU 1 seq prokMSA_id:78986 Desulfobacula sp. clone SB2_56 2.28.4.13.7.9944 OTU 1 seq prokMSA_id:10943 Desulfobacterium BSv41 str. BSv41 2.28.4.13.7.9963 OTU 1 seq prokMSA_id:47877 Desulfobacterium vacuolatum DSM 3385 2.28.4.13.7.9977 OTU 1 seq prokMSA_id:10926 Desulfobacter halotolerans 2.28.4.13.7.9976 OTU 1 seq prokMSA_id:10925 Desulfobacter BG72 str. BG72 2.28.5 EPSILON_SUBDIVISION 597 seqs 2.28.5.1 HELICOBACTER_AND_RELATIVES 177 seqs 2.28.5.1.1 HLB.PYLORI_SUBGROUP 173 seqs 2.28.5.1.1.10399 OTU 2 seqs prokMSA_id:34981 epsilon 1070 prokMSA_id:66099 epsilon clone:KB36 AB074953 2.28.5.1.1.10385 OTU 1 seq prokMSA_id:11008 Helicobacter 'pig E1' 2.28.5.1.1.10386 OTU 1 seq prokMSA_id:39617 Cilia-associated respiratory B6 2.28.5.1.1.10415 OTU 1 seq prokMSA_id:74305 Helicobacter sp. 'MIT 94-022' 2.28.5.1.1.10436 OTU 14 seqs prokMSA_id:10964 Helicobacter trogontum str. LRB 8581 prokMSA_id:10976 Helicobacter hepaticus str. FRED1 prokMSA_id:11040 Helicobacter muridarum str. UNSW 1.7st prokMSA_id:11041 Helicobacter muridarum str. UNSW 1.6cae prokMSA_id:16301 Helicobacter sp. 'MIT 97-6194-5' prokMSA_id:25488 Helicobacter muridarum prokMSA_id:26677 Helicobacter sp. Wee Tee prokMSA_id:48289 Helicobacter aurati complete prokMSA_id:49735 Helicobacter sp. MIT 99-5507 prokMSA_id:69782 Helicobacter sp. HC15880 prokMSA_id:74512 Helicobacter sp. isolate 11934 prokMSA_id:81282 Helicobacter sp. MIT 01-6242 prokMSA_id:82083 Helicobacter sp. MIT 01-5924 AY203903 prokMSA_id:82242 Helicobacter sp. MIT 01-5529A 2.28.5.1.1.10444 OTU 3 seqs prokMSA_id:11015 Helicobacter suncus str. Kaz-1 prokMSA_id:11016 Helicobacter suncus str. Kaz-2 prokMSA_id:28993 Helicobacter typhlonicus AF061104 2.28.5.1.1.10443 OTU 13 seqs prokMSA_id:10946 Helicobacter pylori ATCC 43504 prokMSA_id:10958 Helicobacter pylori str. MC123 prokMSA_id:10959 Helicobacter 'liver 4' str. liver 4 prokMSA_id:10973 Helicobacter pylori str. 85D08 ATCC 51407 prokMSA_id:10975 Helicobacter 'liver 1' str. liver 1 prokMSA_id:11013 Helicobacter pylori NCTC 11637 prokMSA_id:11018 Helicobacter pylori str. MC937 prokMSA_id:11084 Helicobacter pylori str. MC903 prokMSA_id:11086 Helicobacter pylori NCTC 11638 prokMSA_id:31459 Helicobacter nemestrinae prokMSA_id:57708 Helicobacter pylori strain Lit81 prokMSA_id:57709 Helicobacter pylori strain Lit76 prokMSA_id:57710 Helicobacter pylori strain Lit69 2.28.5.1.1.10442 OTU 14 seqs prokMSA_id:10949 Helicobacter pylori str. 26695 = prokMSA_id:10952 Helicobacter pylori ATCC 43504 prokMSA_id:11014 Helicobacter mustelae str. 91-292-E1A Fox. M88156 prokMSA_id:11045 Helicobacter bilis str. MIT 97-6456. AF047847 prokMSA_id:11046 Helicobacter pullorum str. MIT 92-7458. AF047850 prokMSA_id:24309 Helicobacter cetorum MIT 00-7128 prokMSA_id:31862 Helicobacter sp. YMRC 000428 prokMSA_id:52884 Helicobacter apodemus prokMSA_id:64304 Helicobacter heilmannii strain TD1 prokMSA_id:72792 Helicobacter cetorum strain MIT 99-5656 prokMSA_id:74354 Helicobacter sp. 'MIT 99-5657' prokMSA_id:74909 Helicobacter pylori strain 1205 prokMSA_id:76377 Helicobacter cetorum MIT 01-6202 prokMSA_id:77094 Helicobacter cetorum MIT 00-5903 2.28.5.1.1.10451 OTU 11 seqs prokMSA_id:10968 Helicobacter salomonis str. 4 prokMSA_id:10969 Helicobacter heilmannii str. AF53 prokMSA_id:10999 "Gastrospirillum hominis" str. 2 prokMSA_id:11000 Helicobacter 'pig C2' prokMSA_id:11029 Helicobacter felis str. 144-10 prokMSA_id:11030 Helicobacter felis str. 1136-7 prokMSA_id:11031 Helicobacter bizzozeronii str. 865-2 prokMSA_id:11034 Helicobacter heilmannii str. 1 prokMSA_id:64312 Helicobacter heilmannii strain HU2 prokMSA_id:64317 Helicobacter heilmannii strain C4S prokMSA_id:72292 Helicobacter heilmannii strain WD1 2.28.5.1.1.10454 OTU 5 seqs prokMSA_id:10951 Helicobacter pametensis str. Seymour B15 CCUG 29259 prokMSA_id:11047 Helicobacter 'ATCC 43968' ATCC 43968 prokMSA_id:11050 Helicobacter cholecystus str. Hkb-1 ATCC 700242 prokMSA_id:11067 Helicobacter pullorum NCTC 12826 prokMSA_id:50310 Helicobacter pametensis 2.28.5.1.1.10462 OTU 7 seqs prokMSA_id:10983 Helicobacter rodentium str. MIT 95-1707 ATCC 700285 prokMSA_id:10990 Helicobacter rodentium str. MIT 96-1312 prokMSA_id:10991 Helicobacter 'MIT 95-2011' str. MIT 95-2011 prokMSA_id:16734 clone p-4283-4Wa3 prokMSA_id:27055 Helicobacter sp. MIT 99-5504 prokMSA_id:34144 Helicobacter sp. MIT 99-5501 prokMSA_id:42376 Helicobacter sp. MIT 00-7129 AF455131 2.28.5.1.1.10428 OTU 5 seqs prokMSA_id:11021 Flexispira rappini str. FH 9702248 prokMSA_id:27482 Helicobacter cinaedi strain ADN 0413 prokMSA_id:29786 Flexispira rappini and intervening prokMSA_id:56169 Helicobacter cinaedi prokMSA_id:60772 Flexispira rappini 2.28.5.1.1.10460 OTU 1 seq prokMSA_id:11042 Helicobacter hepaticus str. Fox Hh-1 ATCC 51449 2.28.5.1.1.10430 OTU 17 seqs prokMSA_id:11003 Helicobacter suis prokMSA_id:11004 Helicobacter 'pig A2' prokMSA_id:11005 Helicobacter 'pig B1' prokMSA_id:11006 Helicobacter 'pig B6' prokMSA_id:11007 Helicobacter 'pig D7' prokMSA_id:11009 Helicobacter 'pig F8' prokMSA_id:55918 Helicobacter heilmannii strain CM2 prokMSA_id:64305 Helicobacter heilmannii strain RM2 prokMSA_id:64307 Helicobacter heilmannii strain RM1 prokMSA_id:64310 Helicobacter heilmannii strain P5 prokMSA_id:64314 Helicobacter heilmannii strain MM1 prokMSA_id:64316 Helicobacter heilmannii strain MM2 prokMSA_id:64324 Helicobacter heilmannii strain HU4 prokMSA_id:64328 Helicobacter heilmannii strain HU5 prokMSA_id:71558 Helicobacter heilmannii strain P4 prokMSA_id:72724 Helicobacter heilmannii strain CM1 prokMSA_id:73122 Helicobacter heilmannii strain P1 2.28.5.1.1.10448 OTU 8 seqs prokMSA_id:10966 Helicobacter bizzozeronii CCUG 35045 prokMSA_id:10967 Helicobacter felis str. Dog-1 prokMSA_id:11026 Helicobacter salomonis str. Inkinen CCUG 37845 prokMSA_id:11027 Helicobacter felis str. 937-12 prokMSA_id:11028 Helicobacter felis str. 390-9 prokMSA_id:11032 Helicobacter felis str. Dog-2 Eaton 2301 prokMSA_id:11033 Helicobacter felis str. Dog-3 Eaton 1602 prokMSA_id:47191 Helicobacter bizzozeronii 2.28.5.1.1.10520 OTU 1 seq prokMSA_id:41542 Helicobacter sp. isolate 964 2.28.5.1.1.10518 OTU 1 seq prokMSA_id:11080 Helicobacter nemestrinae str. T81213-NTB ATCC 49396 2.28.5.1.1.10548 OTU 12 seqs prokMSA_id:11023 Helicobacter sp prokMSA_id:11070 Helicobacter VA str. VA prokMSA_id:17350 Helicobacter cinaedi strain CCUG 18818 prokMSA_id:20816 Helicobacter cinaedi isolate 30327 prokMSA_id:30026 Helicobacter cinaedi isolate 30365 prokMSA_id:38896 Helicobacter sp. isolate 3028 prokMSA_id:39557 Helicobacter rappini W.Tee-Bat prokMSA_id:44759 Helicobacter cinaedi isolate 30314 prokMSA_id:47656 Helicobacter sp. isolate 2634 prokMSA_id:49270 Helicobacter cinaedi isolate 31111 prokMSA_id:70150 Helicobacter sp. GOSH prokMSA_id:71514 Helicobacter sp. isolate 384 2.28.5.1.1.10570 OTU 1 seq prokMSA_id:41903 Helicobacter sp. MN-3 2.28.5.1.1.10552 OTU 3 seqs prokMSA_id:16388 Helicobacter winghamensis NLEP 98-202 prokMSA_id:20336 Helicobacter winghamensis strain NLEP 97-1611 prokMSA_id:60773 Helicobacter sp. J2103 2.28.5.1.1.10541 OTU 1 seq prokMSA_id:10984 str. clone koll6 2.28.5.1.1.10534 OTU 10 seqs prokMSA_id:10957 Helicobacter pylori str. 26695 =rrnB prokMSA_id:11017 Helicobacter pylori str. D01 prokMSA_id:11056 Helicobacter pylori str. MC238 prokMSA_id:36626 Helicobacter pylori prokMSA_id:55890 Helicobacter pylori strain Sal05 prokMSA_id:56665 Helicobacter pylori strain Sal10 prokMSA_id:61186 Helicobacter pylori isolate 181 complete prokMSA_id:68374 Helicobacter pylori strain 109 prokMSA_id:68375 Helicobacter pylori strain 108 prokMSA_id:75781 Helicobacter pylori strain 1200 2.28.5.1.1.10536 OTU 1 seq prokMSA_id:10980 Helicobacter bovis 2.28.5.1.1.10562 OTU 33 seqs prokMSA_id:11022 Flexispira rappini str. H1353 prokMSA_id:11053 Helicobacter sp prokMSA_id:11060 Helicobacter bilis str. Hb1 ATCC 51630 prokMSA_id:11062 Helicobacter canis NCTC 12739 prokMSA_id:11063 Helicobacter 'feline isolate' prokMSA_id:11064 Helicobacter canis str. MIT 98-152 prokMSA_id:11068 Helicobacter bilis str. Hb2 ATCC 51631 prokMSA_id:11069 Flexispira CDC-H69 str. CDC-H69 prokMSA_id:17771 Helicobacter cf. pullorum strain W.Tee-Cro prokMSA_id:19959 Helicobacter canis prokMSA_id:20805 Helicobacter cinaedi strain CCUG 33887 prokMSA_id:23629 Helicobacter sp. 'Flexispira taxon 8' strain ATCC 49317 prokMSA_id:26344 Helicobacter sp. isolate 1199 prokMSA_id:26749 Helicobacter sp. MIT 98-5357 complete prokMSA_id:26909 Helicobacter sp. isolate 1058 prokMSA_id:28820 Helicobacter bilis prokMSA_id:28994 Helicobacter sp. 'Flexispira taxon 4' prokMSA_id:29701 Helicobacter rappini W.Tee-Yu prokMSA_id:29878 Helicobacter sp. 'hamster B' prokMSA_id:32695 Helicobacter sp. 'Flexispira taxon 8' prokMSA_id:32900 Helicobacter sp. MIT 95-234-6 prokMSA_id:40721 Helicobacter rappini strain H 157 S prokMSA_id:47556 Helicobacter rappini strain H 95 S prokMSA_id:48498 Helicobacter sp. UNSW1.7sp prokMSA_id:49662 Helicobacter sp prokMSA_id:49754 Helicobacter sp. strain MZ 640285 prokMSA_id:68999 Helicobacter sp. 'Flexispira taxon 2' prokMSA_id:70187 Helicobacter sp. UNSWMCSp1 prokMSA_id:70293 Helicobacter sp. UNSW1.7col prokMSA_id:71120 Helicobacter rappini strain 2 SU prokMSA_id:72874 Helicobacter hepaticus prokMSA_id:74357 Helicobacter rappini strain 3 SU prokMSA_id:81166 Helicobacter sp. MIT 01-5529B 2.28.5.1.1.10567 OTU 1 seq prokMSA_id:10947 clone ACE-27 2.28.5.1.1.10616 OTU 1 seq prokMSA_id:10978 str. BD5-13 2.28.5.1.1.10572 OTU 1 seq prokMSA_id:10974 Helicobacter sp 2.28.5.1.1.10615 OTU 1 seq prokMSA_id:10977 clone SRang2.3 2.28.5.1.1.10580 OTU 1 seq prokMSA_id:37024 Helicobacter sp. 'Solnick 9A1-T71' 2.28.5.1.1.10576 OTU 1 seq prokMSA_id:11085 Helicobacter 'liver 3' str. liver 3 2.28.5.1.1.10602 OTU 1 seq prokMSA_id:43302 Helicobacter sp. MN-1 2.28.5.1.2 WLN.SUCCINOGENES_SUBGROUP 4 seqs 2.28.5.1.2.10519 OTU 2 seqs prokMSA_id:26106 Wolinella succinogenes prokMSA_id:29152 Wolinella succinogenes 2.28.5.1.2.10575 OTU 2 seqs prokMSA_id:42495 Candidatus Wolinella africanus SA-5 prokMSA_id:47305 Candidatus Wolinella africanus SA-7 AF297633 2.28.5.2 THIOVULUM_GROUP 157 seqs 2.28.5.2.1 PELE'S_VENTS_CLONES_SUBGROUP 19 seqs 2.28.5.2.1.10425 OTU 1 seq prokMSA_id:81472 Sulfromonas thioautotrophicum strain:OK5 2.28.5.2.1.10472 OTU 1 seq prokMSA_id:73836 epsilon VC1.2-cl26 2.28.5.2.1.10478 OTU 1 seq prokMSA_id:38197 epsilon VC1.2-cl51 2.28.5.2.1.10504 OTU 1 seq prokMSA_id:20884 epsilon clone 33-FL98B00 2.28.5.2.1.10488 OTU 1 seq prokMSA_id:57486 epsilon clone P. palm C 43 2.28.5.2.1.10543 OTU 6 seqs prokMSA_id:11093 Pele's Vents clone PVB_63 prokMSA_id:11095 Pele's Vents clone PVB_55 prokMSA_id:11096 Pele's Vents clone PVB_15 prokMSA_id:11099 Pele's Vents clone PVB_12 prokMSA_id:11101 Pele's Vents clone PVB_10 prokMSA_id:11102 Pele's Vents clone PVB_7 2.28.5.2.1.10593 OTU 1 seq prokMSA_id:43869 epsilon VC1.2-cl50 2.28.5.2.1.10578 OTU 1 seq prokMSA_id:36248 epsilon clone 33-FL98B99 2.28.5.2.1.10600 OTU 1 seq prokMSA_id:82461 clone KD1-140 2.28.5.2.1.10588 OTU 1 seq prokMSA_id:11097 clone PENDANT-19 2.28.5.2.1.10589 OTU 1 seq prokMSA_id:11098 Thiovulum PENDANT-10 2.28.5.2.1.10577 OTU 1 seq prokMSA_id:34712 epsilon clone 33-FL99B00 2.28.5.2.1.10596 OTU 1 seq prokMSA_id:48010 epsilon Arctic96B-13 2.28.5.2.1.10622 OTU 1 seq prokMSA_id:33082 epsilon MERTZ_2CM_162 2.28.5.2.2 TMS.DENITRIFICANS_SUBGROUP 18 seqs 2.28.5.2.2.10389 OTU 1 seq prokMSA_id:29761 clone Car2a 2.28.5.2.2.10392 OTU 1 seq prokMSA_id:45923 epsilon clone 33-PA8B00 2.28.5.2.2.10459 OTU 1 seq prokMSA_id:11113 str. JTB146 2.28.5.2.2.10466 OTU 1 seq prokMSA_id:38258 ODPB-B9 2.28.5.2.2.10458 OTU 1 seq prokMSA_id:11112 clone SRang1.23 2.28.5.2.2.10445 OTU 1 seq prokMSA_id:11103 Pele's Vents clone PVB_73 2.28.5.2.2.10449 OTU 1 seq prokMSA_id:11104 str. NKB11 2.28.5.2.2.10452 OTU 1 seq prokMSA_id:11109 clone Phenol-1 2.28.5.2.2.10501 OTU 1 seq prokMSA_id:36811 epsilon clone 33-PA19B00 2.28.5.2.2.10495 OTU 1 seq prokMSA_id:11111 clone SRang1.25 2.28.5.2.2.10491 OTU 1 seq prokMSA_id:37490 epsilon clone 33-PA11B00 2.28.5.2.2.10493 OTU 1 seq prokMSA_id:11108 Thiomicrospira denitrificans DSM 1251 2.28.5.2.2.10565 OTU 1 seq prokMSA_id:51546 epsilon clone 33-PA46B00 2.28.5.2.2.10528 OTU 2 seqs prokMSA_id:31948 epsilon clone 33-FL14B98 prokMSA_id:38225 epsilon clone 33-PA75B98 2.28.5.2.2.10599 OTU 1 seq prokMSA_id:32993 epsilon clone 33-FL51B00 2.28.5.2.2.10595 OTU 1 seq prokMSA_id:40382 ODPB-B3 2.28.5.2.2.10591 OTU 1 seq prokMSA_id:19590 epsilon VC1.2-cl49 2.28.5.2.4 ALVINELLA_POMPEJANA_SYMBIONTS_SUBGROUP 120 seqs 2.28.5.2.4.10416 OTU 6 seqs prokMSA_id:11151 VC2.1 Bac8 complete AF068789 prokMSA_id:11152 VC2.1 Bac17 complete prokMSA_id:11153 VC2.1 Bac19 complete prokMSA_id:11154 VC2.1 Bac20 complete prokMSA_id:11155 VC2.1 Bac30 complete AF068804 prokMSA_id:11156 VC2.1 Bac12 complete AF068812 2.28.5.2.4.10423 OTU 1 seq prokMSA_id:77777 epsilon clone Hyd01-01 2.28.5.2.4.10411 OTU 1 seq prokMSA_id:77641 epsilon clone:Rs-P71 2.28.5.2.4.10408 OTU 1 seq prokMSA_id:34515 epsilon VC1.2-cl69 2.28.5.2.4.10405 OTU 1 seq prokMSA_id:67791 isolate a1b030 2.28.5.2.4.10384 OTU 1 seq prokMSA_id:34431 epsilon VC1.2-cl06 2.28.5.2.4.10404 OTU 3 seqs prokMSA_id:22254 epsilon clone 33-FL71B99 prokMSA_id:30424 epsilon clone 33-PA111B99 prokMSA_id:48476 epsilon clone 33-FL127B99 2.28.5.2.4.10427 OTU 3 seqs prokMSA_id:61855 epsilon clone R76-B151 prokMSA_id:61872 epsilon clone R103-B43 prokMSA_id:61874 epsilon clone R103-B37 2.28.5.2.4.10438 OTU 6 seqs prokMSA_id:11137 clone BPC056 prokMSA_id:11138 clone GCA014 prokMSA_id:11143 str. BD7-6 prokMSA_id:61858 epsilon clone R76-B78 prokMSA_id:61878 epsilon clone R103-B15 prokMSA_id:82567 Epsilon 49MY 2.28.5.2.4.10453 OTU 1 seq prokMSA_id:61866 epsilon clone R76-B30 2.28.5.2.4.10435 OTU 1 seq prokMSA_id:25670 mRNA clone sipK94 2.28.5.2.4.10457 OTU 1 seq prokMSA_id:79565 Dex60-82 strain Dex60-82 2.28.5.2.4.10432 OTU 9 seqs prokMSA_id:61857 epsilon clone R76-B129 prokMSA_id:61859 epsilon clone R76-B76 prokMSA_id:61860 epsilon clone R76-B67 prokMSA_id:61862 epsilon clone R76-B57 prokMSA_id:61863 epsilon clone R76-B51 prokMSA_id:61864 epsilon clone R76-B25 prokMSA_id:61865 epsilon clone R76-B47 prokMSA_id:61868 epsilon clone R76-B29 prokMSA_id:61871 epsilon clone R103-B46 2.28.5.2.4.10469 OTU 1 seq prokMSA_id:11120 symbiont of Alvinella pompejana 2.28.5.2.4.10473 OTU 1 seq prokMSA_id:11127 symbiont of Rimicaris exoculata 2.28.5.2.4.10471 OTU 1 seq prokMSA_id:11124 symbiont of Alvinella pompejana 2.28.5.2.4.10470 OTU 1 seq prokMSA_id:11121 symbiont of Alvinella pompejana 2.28.5.2.4.10426 OTU 1 seq prokMSA_id:79345 BHI60-53 strain BHI60-53 2.28.5.2.4.10440 OTU 1 seq prokMSA_id:21582 epsilon clone 33-PA26B98 2.28.5.2.4.10482 OTU 1 seq prokMSA_id:57475 epsilon clone P. palm C 140 2.28.5.2.4.10475 OTU 1 seq prokMSA_id:67782 isolate C1_B006 2.28.5.2.4.10492 OTU 1 seq prokMSA_id:51291 Epsilon Am-H 2.28.5.2.4.10477 OTU 1 seq prokMSA_id:47967 S17sBac5 complete 2.28.5.2.4.10481 OTU 1 seq prokMSA_id:57474 epsilon clone P. palm C/A 13 2.28.5.2.4.10480 OTU 1 seq prokMSA_id:57473 epsilon clone P. palm C 84 2.28.5.2.4.10490 OTU 1 seq prokMSA_id:54845 S17sBac21 complete 2.28.5.2.4.10517 OTU 2 seqs prokMSA_id:35810 S17sBac14 complete prokMSA_id:36523 S17sBac4 complete 2.28.5.2.4.10521 OTU 1 seq prokMSA_id:18072 epsilon clone 33-PA14B00 2.28.5.2.4.10489 OTU 4 seqs prokMSA_id:17634 epsilon clone 33-FL69B98 prokMSA_id:46918 epsilon clone 33-FL76B98 prokMSA_id:48014 epsilon clone 33-FL37B99 prokMSA_id:53082 S17sBac16 complete AF299121 2.28.5.2.4.10505 OTU 1 seq prokMSA_id:11129 VC2.1 Bac1 complete 2.28.5.2.4.10512 OTU 1 seq prokMSA_id:33429 epsilon clone 33-PA55B00 2.28.5.2.4.10502 OTU 1 seq prokMSA_id:16659 epsilon clone 33-PA73B98 2.28.5.2.4.10513 OTU 1 seq prokMSA_id:11136 VC2.1 Bac31 complete 2.28.5.2.4.10515 OTU 3 seqs prokMSA_id:17403 S17sBac3 complete prokMSA_id:40818 S17sBac34 complete prokMSA_id:42752 S17sBac8 complete 2.28.5.2.4.10516 OTU 1 seq prokMSA_id:46541 epsilon clone 33-PA72B98 2.28.5.2.4.10497 OTU 1 seq prokMSA_id:83596 epsilon clone PD-UASB-2 2.28.5.2.4.10545 OTU 9 seqs prokMSA_id:23967 clone Car29rb prokMSA_id:30408 clone CarB13a prokMSA_id:33016 n12r AF194187 prokMSA_id:34512 epsilon n22 prokMSA_id:35085 clone Car59rc prokMSA_id:36709 clone Car73ra prokMSA_id:49247 epsilon n29r AF194212 prokMSA_id:50199 epsilon n18r AF194210 prokMSA_id:84016 epsilon clone DBBB-68 2.28.5.2.4.10530 OTU 29 seqs prokMSA_id:11140 str. BD1-4 prokMSA_id:11141 str. BD2-1 prokMSA_id:11145 str. NKB8 prokMSA_id:11146 str. NKB9 prokMSA_id:11148 str. NKB12 prokMSA_id:11149 str. JTB315 prokMSA_id:55437 epsilon clone P. palm C/A 55 prokMSA_id:57471 epsilon clone P. palm C/A 113 prokMSA_id:57472 epsilon clone P. palm C/A 114 prokMSA_id:61861 epsilon clone R76-B61 prokMSA_id:61867 epsilon clone R76-A19 prokMSA_id:61869 epsilon clone R103-B76 prokMSA_id:61875 epsilon clone R103-B22 prokMSA_id:61876 epsilon clone R103-B19 prokMSA_id:67787 isolate CS_B015 prokMSA_id:67790 isolate a2b043 AF420347 prokMSA_id:67793 isolate a1b001 prokMSA_id:67794 isolate a1b024 AF420343 prokMSA_id:73787 isolate C1_B011 prokMSA_id:79175 BHI80-16 strain BHI80-16 prokMSA_id:79240 BHI60-14 strain BHI60-14 prokMSA_id:79418 BHI60-9 strain BHI60-9 prokMSA_id:79474 Dex80-5 strain Dex80-5 AJ431225 prokMSA_id:79591 sequences clone: IndB1-30 prokMSA_id:79598 Dex80-27 strain Dex80-27 prokMSA_id:82535 clone B01R002 prokMSA_id:83351 clone B01R006 prokMSA_id:83924 clone B03P029 prokMSA_id:96301 epsilon clone AT-pp46 AY225621 2.28.5.2.4.10556 OTU 1 seq prokMSA_id:16957 Epsilon 18.2 2.28.5.2.4.10526 OTU 1 seq prokMSA_id:61877 epsilon clone R103-B18 2.28.5.2.4.10571 OTU 1 seq prokMSA_id:11142 str. BD2-5 2.28.5.2.4.10569 OTU 1 seq prokMSA_id:41233 epsilon VC1.2-cl21 2.28.5.2.4.10547 OTU 1 seq prokMSA_id:20755 epsilon VC1.2-cl57 2.28.5.2.4.10573 OTU 1 seq prokMSA_id:11150 symbiont of Alvinella pompejana 2.28.5.2.4.10620 OTU 1 seq prokMSA_id:57470 epsilon clone P. palm C/A 18 2.28.5.2.4.10584 OTU 1 seq prokMSA_id:70391 epsilon VC1.2-cl42 2.28.5.2.4.10618 OTU 1 seq prokMSA_id:29260 clone Car13a 2.28.5.2.4.10614 OTU 1 seq prokMSA_id:79600 BHI80-49 strain BHI80-49 2.28.5.2.4.10612 OTU 1 seq prokMSA_id:57469 epsilon clone P. palm C/A 64 2.28.5.2.4.10611 OTU 1 seq prokMSA_id:57468 epsilon clone P. palm C/A 220 2.28.5.2.4.10610 OTU 1 seq prokMSA_id:57467 epsilon clone P. palm C/A 89 2.28.5.2.4.10590 OTU 1 seq prokMSA_id:78387 epsilon clone:Rs-H40 2.28.5.2.4.10606 OTU 1 seq prokMSA_id:40838 S17sBac25 complete 2.28.5.2.4.10598 OTU 1 seq prokMSA_id:33791 epsilon clone 33-PA64B98 2.28.5.2.4.10582 OTU 1 seq prokMSA_id:20059 Top-147 clone Top-147 2.28.5.2.4.10621 OTU 1 seq prokMSA_id:34281 epsilon clone 33-PA3B00 2.28.5.3 CAMPYLOBACTER_GROUP 262 seqs 2.28.5.3.1 AOB.CRYAEROPHILUS_SUBGROUP 74 seqs 2.28.5.3.1.10402 OTU 1 seq prokMSA_id:11182 str. JTB129 2.28.5.3.1.10419 OTU 1 seq prokMSA_id:60384 Arcobacter sp. LA31B 2.28.5.3.1.10388 OTU 1 seq prokMSA_id:40453 epsilon clone 33-FL74B00 2.28.5.3.1.10403 OTU 1 seq prokMSA_id:51261 epsilon clone 33-FL70B00 2.28.5.3.1.10396 OTU 1 seq prokMSA_id:11177 Arcobacter PENDANT-6 2.28.5.3.1.10382 OTU 2 seqs prokMSA_id:11162 Arcobacter sp. str. Solar Lake prokMSA_id:70443 Arcobacter sp. L42994 2.28.5.3.1.10401 OTU 1 seq prokMSA_id:22128 Oilfield 'FWKO B' 2.28.5.3.1.10400 OTU 1 seq prokMSA_id:11180 str. BD1-29 2.28.5.3.1.10397 OTU 2 seqs prokMSA_id:24487 epsilon 1053 AB030593 prokMSA_id:35924 epsilon 1006 2.28.5.3.1.10387 OTU 1 seq prokMSA_id:11168 clone T95 2.28.5.3.1.10383 OTU 1 seq prokMSA_id:11163 str. 45.e 2.28.5.3.1.10410 OTU 1 seq prokMSA_id:70950 Candidatus Arcobacter sulfidicus 2.28.5.3.1.10394 OTU 1 seq prokMSA_id:11170 clone T18 2.28.5.3.1.10422 OTU 2 seqs prokMSA_id:50675 epsilon clone CD11H4 prokMSA_id:51742 epsilon clone CD11H2 2.28.5.3.1.10446 OTU 4 seqs prokMSA_id:75446 epsilon clone ULIB-70 prokMSA_id:76194 epsilon clone ALIB-70 prokMSA_id:83509 epsilon clone UBBB-42 prokMSA_id:84374 epsilon clone ABBB-16 2.28.5.3.1.10450 OTU 1 seq prokMSA_id:45228 Arcobacter sp. clone B4b1 2.28.5.3.1.10465 OTU 1 seq prokMSA_id:35552 epsilon clone 33-FL34B00 2.28.5.3.1.10433 OTU 10 seqs prokMSA_id:19566 CHA3-127 clone CHA3-127 AJ132726 prokMSA_id:20461 CHA3-437 clone CHA3-437 AJ132728 prokMSA_id:25911 CHA3-66 clone CHA3-66 AJ132727 prokMSA_id:27126 CHA3-124 clone CHA3-124 prokMSA_id:33261 CHA3-102 clone CHA3-102 AJ132731 prokMSA_id:42967 CHA3-101 clone CHA3-101 prokMSA_id:48263 CHA3-30 clone CHA3-30 prokMSA_id:49402 CHA3-4 clone CHA3-4 prokMSA_id:72967 CHA3-217 clone CHA3-217 prokMSA_id:74747 CHA3-215 clone CHA3-215 2.28.5.3.1.10461 OTU 2 seqs prokMSA_id:11183 str. JTB360 prokMSA_id:79301 sequences clone: IndB2-33 2.28.5.3.1.10514 OTU 2 seqs prokMSA_id:21241 epsilon clone CD4B3 prokMSA_id:23096 epsilon clone CD5G4 2.28.5.3.1.10474 OTU 1 seq prokMSA_id:11181 str. 77.d 2.28.5.3.1.10499 OTU 1 seq prokMSA_id:16393 epsilon clone 33-FL76B00 2.28.5.3.1.10503 OTU 2 seqs prokMSA_id:11179 Arcobacter nitrofigilis CCUG 15893 . L14627 prokMSA_id:72479 Marine MSC2 2.28.5.3.1.10498 OTU 1 seq prokMSA_id:32175 Arcobacter sp. clone GOBB3-CL322 2.28.5.3.1.10496 OTU 1 seq prokMSA_id:51975 Arcobacter sp. clone D1a1 2.28.5.3.1.10555 OTU 1 seq prokMSA_id:25916 Arcobacter kps57f 2.28.5.3.1.10557 OTU 1 seq prokMSA_id:38114 epsilon clone 33-PA74B00 2.28.5.3.1.10558 OTU 1 seq prokMSA_id:48714 epsilon MERTZ_0CM_34 2.28.5.3.1.10560 OTU 1 seq prokMSA_id:49553 epsilon clone 33-FL58B00 2.28.5.3.1.10561 OTU 1 seq prokMSA_id:49628 epsilon KTc1160 2.28.5.3.1.10564 OTU 1 seq prokMSA_id:44326 epsilon clone 33-PA28B00 2.28.5.3.1.10529 OTU 6 seqs prokMSA_id:17190 epsilon 1065 prokMSA_id:30662 epsilon 1003 prokMSA_id:35496 epsilon 1032 AB030595 prokMSA_id:36312 epsilon 1067 AB030596 prokMSA_id:48373 epsilon 1057 prokMSA_id:50542 epsilon 1021 AB030594 2.28.5.3.1.10527 OTU 4 seqs prokMSA_id:11158 Arcobacter butzleri CCUG 10373 prokMSA_id:11159 Arcobacter butzleri str. Pig 61. U34386 prokMSA_id:11160 Arcobacter butzleri str. Pig 15. U34388 prokMSA_id:36386 Arcobacter butzleri 2.28.5.3.1.10538 OTU 5 seqs prokMSA_id:11161 Arcobacter skirrowii str. 449/80 CCUG 10374 . L14625 prokMSA_id:11165 Arcobacter cryaerophilus CCUG 17801 prokMSA_id:11169 clone T24 prokMSA_id:11171 clone T55 prokMSA_id:11178 Arcobacter cryaerophilus str. Pig 69. U34387 2.28.5.3.1.10554 OTU 1 seq prokMSA_id:28982 epsilon clone 33-PA6B00 2.28.5.3.1.10523 OTU 1 seq prokMSA_id:61870 epsilon clone R103-B70 2.28.5.3.1.10603 OTU 1 seq prokMSA_id:11173 clone T40 2.28.5.3.1.10583 OTU 1 seq prokMSA_id:21381 clone Car12fa 2.28.5.3.1.10608 OTU 1 seq prokMSA_id:29396 epsilon clone 33-FL88B00 2.28.5.3.1.10601 OTU 1 seq prokMSA_id:32899 epsilon kps81f 2.28.5.3.1.10617 OTU 1 seq prokMSA_id:30435 epsilon MERTZ_0CM_367 2.28.5.3.1.10594 OTU 1 seq prokMSA_id:17990 epsilon BioIuz K34 2.28.5.3.1.10581 OTU 1 seq prokMSA_id:11167 clone T81 2.28.5.3.1.10604 OTU 1 seq prokMSA_id:11175 unnamed organism 2.28.5.3.2 SFS.BARNESII_SUBGROUP 71 seqs 2.28.5.3.2.10414 OTU 1 seq prokMSA_id:82067 clone KD2-34 2.28.5.3.2.10391 OTU 1 seq prokMSA_id:48323 epsilon VC1.2-cl07 2.28.5.3.2.10407 OTU 1 seq prokMSA_id:67795 isolate a1b010 2.28.5.3.2.10421 OTU 1 seq prokMSA_id:77916 candidate division OP11 clone:Rs-M28 2.28.5.3.2.10424 OTU 4 seqs prokMSA_id:17620 epsilon VC1.2-cl02 prokMSA_id:23025 epsilon VC1.2-cl18 prokMSA_id:37981 epsilon VC1.2-cl04 prokMSA_id:42904 epsilon VC1.2-cl13 2.28.5.3.2.10393 OTU 1 seq prokMSA_id:24279 DCE10 2.28.5.3.2.10455 OTU 1 seq prokMSA_id:86409 clone B02R018 2.28.5.3.2.10439 OTU 5 seqs prokMSA_id:11186 Dehalospirillum multivorans str. K prokMSA_id:11189 Sulfurospirillum arsenophilum str. MIT-13 ATCC 700056 prokMSA_id:16474 Enrichment culture JMP-9 prokMSA_id:25462 Sulfurospirillum halorespirans strain PCE-M2 prokMSA_id:40099 epsilon 1014 2.28.5.3.2.10464 OTU 2 seqs prokMSA_id:59205 Campylobacter sp. NO3A prokMSA_id:59210 Campylobacter sp. NO2B 2.28.5.3.2.10447 OTU 12 seqs prokMSA_id:11087 Flexispira rappini str. DBS59. L12765 prokMSA_id:11185 "Geospirillum barnesii" prokMSA_id:11187 Sulfurospirillum deleyianum str. 5175 ATCC 51133 prokMSA_id:11191 Campylobacter sp. CCUG 13942. L14632 prokMSA_id:39964 Helicobacter sp. 'MIT 99-5659-3' AF292380 prokMSA_id:57466 epsilon clone P. palm C/A 26 AJ441213 prokMSA_id:66096 epsilon clone:KB21 AB074956 prokMSA_id:66190 clone IA-22 prokMSA_id:77541 Sulfurospirillum sp. EK7 strain EK7 prokMSA_id:79697 Sulfurospirillum sp. JPD-1 prokMSA_id:85047 epsilon clone LKC2.127-7 AY208812 prokMSA_id:98867 epsilon clone T2-PP12-593 AJ575957 2.28.5.3.2.10487 OTU 1 seq prokMSA_id:11195 Sulfurospirillum ACE-24 2.28.5.3.2.10500 OTU 1 seq prokMSA_id:11193 Sulfurospirillum arcachonense str. F1F6 DSMZ 9755 2.28.5.3.2.10485 OTU 1 seq prokMSA_id:11190 Sulfurospirillum barnesii str. SES-3 2.28.5.3.2.10509 OTU 1 seq prokMSA_id:62490 Sulfurospirillum sp. clone LA4-B52N 2.28.5.3.2.10476 OTU 1 seq prokMSA_id:11188 str. BD1-5 2.28.5.3.2.10486 OTU 1 seq prokMSA_id:11194 Sulfurospirillum BURTON-15 2.28.5.3.2.10563 OTU 1 seq prokMSA_id:11192 Campylobacter sp. DSM806 2.28.5.3.2.10542 OTU 2 seqs prokMSA_id:19883 Sulfurospirillum sp. Am-N prokMSA_id:22148 Sulfurospirillum sp. 18.1 2.28.5.3.2.10566 OTU 1 seq prokMSA_id:22264 CS_B020 2.28.5.3.2.10550 OTU 25 seqs prokMSA_id:20917 Sulfuricurvum kujiense AB053951 prokMSA_id:21738 epsilon 1043 prokMSA_id:22082 epsilon 1028 prokMSA_id:27290 mRNA clone sipK119 prokMSA_id:27914 epsilon 1054 prokMSA_id:34308 epsilon 1005 prokMSA_id:34916 epsilon 1033 prokMSA_id:36148 epsilon 1008 AB030604 prokMSA_id:37769 epsilon 1049 prokMSA_id:40252 Sulfuricurvum kujiense strain:YK-2 AB080643 prokMSA_id:41311 Sulfuricurvum kujiense strain:YK-4 AB080645 prokMSA_id:45975 epsilon 1023 AB030610 prokMSA_id:47752 epsilon 1011 AB030607 prokMSA_id:48041 epsilon 1047 prokMSA_id:49390 Sulfuricurvum kujiense strain:YK-3 prokMSA_id:51819 epsilon 1061 AB030609 prokMSA_id:62394 epsilon clone FTLM3 AF529123 prokMSA_id:62395 epsilon clone FTLM173 AF529118 prokMSA_id:62416 epsilon clone FTL212 prokMSA_id:66097 epsilon clone:KB2 AB074955 prokMSA_id:66098 epsilon clone:KB8 AB074954 prokMSA_id:85203 epsilon clone LKC2.57-8 prokMSA_id:93473 epsilon clone LKC1.58_1 AY191477 prokMSA_id:93579 epsilon clone LKC1.57_4 AY191472 prokMSA_id:93636 epsilon clone LKC1.57_2 AY191470 2.28.5.3.2.10535 OTU 1 seq prokMSA_id:30295 clone RA9C8 2.28.5.3.2.10531 OTU 1 seq prokMSA_id:83453 clone B02R017 2.28.5.3.2.10607 OTU 1 seq prokMSA_id:73328 epsilon VC1.2-cl31 2.28.5.3.2.10586 OTU 4 seqs prokMSA_id:28947 epsilon 1058 prokMSA_id:44032 epsilon 1018 prokMSA_id:66170 clone IIIA-8 prokMSA_id:66178 clone IIB-25 2.28.5.3.4 CAM.FETUS_SUBGROUP 117 seqs 2.28.5.3.4.10390 OTU 1 seq prokMSA_id:67848 epsilon clone 44a-B1-1 2.28.5.3.4.10420 OTU 4 seqs prokMSA_id:11210 Campylobacter hominis str. HS-A. AF062490 prokMSA_id:11211 Campylobacter hominis str. HS-B prokMSA_id:11212 Campylobacter hominis str. HS-C. AF062492 prokMSA_id:36254 Campylobacter hominis strain NCTC 13146 2.28.5.3.4.10417 OTU 1 seq prokMSA_id:82339 clone KM61 2.28.5.3.4.10467 OTU 1 seq prokMSA_id:66100 epsilon clone:KB16 2.28.5.3.4.10463 OTU 10 seqs prokMSA_id:11220 Campylobacter fetus ATCC 27374 . L04314 prokMSA_id:11222 Campylobacter fetus subsp. venerealis ATCC 19438 . L14633 prokMSA_id:11226 Campylobacter fetus ATCC 27374 . M65012 prokMSA_id:11242 Campylobacter fetus subsp. venerealis ATCC 19438 . M65011 prokMSA_id:20808 Campylobacter fetus subsp. fetus isolate 002\827 AJ306568 prokMSA_id:52782 Campylobacter fetus subsp. fetus isolate 102\804 prokMSA_id:57387 Campylobacter fetus subsp. fetus strain H00/415 AF550619 prokMSA_id:57388 Campylobacter fetus subsp. fetus strain F-107/4132 prokMSA_id:68798 Campylobacter fetus subsp. venerealis complete prokMSA_id:71368 Campylobacter fetus MGH 97-3574 2.28.5.3.4.10434 OTU 4 seqs prokMSA_id:11209 Campylobacter gracilis str. WAL 6989 ATCC 33236 prokMSA_id:56165 Campylobacter gracilis strain LMG 7616 AF550656 prokMSA_id:57351 Campylobacter gracilis strain CCUG 13143 prokMSA_id:57352 Campylobacter gracilis strain CCUG 27721 2.28.5.3.4.10456 OTU 12 seqs prokMSA_id:11213 Campylobacter sputorum subsp. bubulus ATCC 33491. L04319 prokMSA_id:11221 Campylobacter showae CCUG 11641. L06975 prokMSA_id:56203 Campylobacter mucosalis strain ATCC 43265 prokMSA_id:57347 Campylobacter mucosalis strain ATCC 49353 prokMSA_id:57348 Campylobacter mucosalis strain ATCC 49354 prokMSA_id:57349 Campylobacter mucosalis strain ATCC 49352 prokMSA_id:57350 Campylobacter rectus strain LMG 7611 prokMSA_id:57354 Campylobacter curvus strain LMG 13936 AF550652 prokMSA_id:57355 Campylobacter concisus strain LMG 13937 prokMSA_id:57356 Campylobacter concisus strain LMG 7545 prokMSA_id:57357 Campylobacter curvus strain LMG 11127 prokMSA_id:57358 Campylobacter curvus strain LMG 11034 AF550650 2.28.5.3.4.10508 OTU 1 seq prokMSA_id:32546 Campylobacter sp. oral clone BB120 2.28.5.3.4.10507 OTU 1 seq prokMSA_id:78064 epsilon clone:Rs-M59 2.28.5.3.4.10494 OTU 1 seq prokMSA_id:69947 Campylobacter faecalis strain 1433 2.28.5.3.4.10484 OTU 5 seqs prokMSA_id:11247 Campylobacter helveticus NCTC 12470 . U03022 prokMSA_id:57359 Campylobacter helveticus strain CCUG 34016 prokMSA_id:57360 Campylobacter helveticus strain CCUG 34016 prokMSA_id:57361 Campylobacter helveticus strain CCUG 30563 prokMSA_id:57363 Campylobacter helveticus strain LMG 12639 2.28.5.3.4.10540 OTU 1 seq prokMSA_id:57353 Campylobacter showae strain LMG 12636 2.28.5.3.4.10546 OTU 35 seqs prokMSA_id:11214 Campylobacter jejuni subsp. jejuni str. TGH 9011 ATCC 43431 prokMSA_id:11219 Campylobacter sp. NCTC 13006 prokMSA_id:11243 Campylobacter coli str. VC80; 1407 ATCC 33559 . M59073 prokMSA_id:11244 Campylobacter lari str. VC187; WRI 3034/77 CCUG 23947 prokMSA_id:11249 Campylobacter coli str. 1407 CCUG 11283 . L04312 prokMSA_id:11253 Campylobacter coli str. RMIT32A CCUG 33450 . L19738 prokMSA_id:11256 Campylobacter jejuni subsp. jejuni ATCC 33560 . M59298 prokMSA_id:11257 Campylobacter jejuni subsp. jejuni CCUG 11284 . L04315 prokMSA_id:11258 Campylobacter jejuni subsp. doylei str. SSI 5384-98 prokMSA_id:49562 Campylobacter jejuni complete genome NC_002163 prokMSA_id:54599 Campylobacter lari genes ITS region and 23S and complete str prokMSA_id:55836 Campylobacter jejuni strain H99/240 prokMSA_id:57373 Campylobacter lari strain LMG 14338 prokMSA_id:57374 Campylobacter jejuni strain B99/206 prokMSA_id:57375 Campylobacter lari strain LMG 7607 prokMSA_id:57376 Campylobacter jejuni strain B99/224 prokMSA_id:57377 Campylobacter jejuni strain LMG 9243 prokMSA_id:57378 Campylobacter jejuni strain LMG 9217 AF550626 prokMSA_id:57379 Campylobacter coli strain B99/131 prokMSA_id:57380 Campylobacter coli strain H99/155 AF550624 prokMSA_id:57381 Campylobacter coli strain H99/119 AF550623 prokMSA_id:57382 Campylobacter coli strain LMG 15884 prokMSA_id:57383 Campylobacter coli strain LMG 15883 prokMSA_id:57384 Campylobacter coli strain LMG 9220 AF550620 prokMSA_id:63933 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genom prokMSA_id:66978 Campylobacter coli strain 98/C053/12 AF372096 prokMSA_id:66979 Campylobacter coli strain 98/C053/11 AF372095 prokMSA_id:66980 Campylobacter coli strain 98/C053/1 AF372093 prokMSA_id:66981 Campylobacter coli strain 98/C053/2 AF372094 prokMSA_id:66982 Campylobacter jejuni strain 98/E599/10 AF393203 prokMSA_id:66983 Campylobacter jejuni strain 98/E600/5 AF393202 prokMSA_id:66984 Campylobacter jejuni strain WH11 prokMSA_id:66985 Campylobacter coli strain LMG 6440 AF372092 prokMSA_id:66989 Campylobacter jejuni strain NCTC 11351 prokMSA_id:74490 Campylobacter lari strain LMG 11760 AF550633 2.28.5.3.4.10525 OTU 4 seqs prokMSA_id:11227 Campylobacter sputorum subsp. sputorum str. S17 ATCC 35980 prokMSA_id:56624 Campylobacter sputorum strain LMG 11761 prokMSA_id:57369 Campylobacter sputorum strain CSP-1 prokMSA_id:57371 Campylobacter sputorum strain LMG 10388 2.28.5.3.4.10553 OTU 19 seqs prokMSA_id:11204 Campylobacter lanienae str. UB 993 prokMSA_id:11205 Campylobacter lanienae NCTC 13004 prokMSA_id:11233 Campylobacter hyointestinalis subsp. lawsonii CCUG 27631. AF prokMSA_id:11234 Campylobacter hyointestinalis subsp. lawsonii str. CHY5 prokMSA_id:11235 Campylobacter hyointestinalis subsp. lawsonii str. CHY6 prokMSA_id:11236 Campylobacter hyointestinalis subsp. lawsonii str. CHY7 prokMSA_id:11237 Campylobacter hyointestinalis subsp. lawsonii str. CHY8 prokMSA_id:11238 Campylobacter hyointestinalis subsp. hyointestinalis str. SV prokMSA_id:11239 Campylobacter cf. lanienae UB 992 str. UB 992. AF043422 prokMSA_id:11240 Campylobacter cf. lanienae UB 994 str. UB 994. AF043424 prokMSA_id:32509 equine intestinal sp. MW08 clone MW08 AJ408195 prokMSA_id:49620 clone p-2602-9F5 AF371867 prokMSA_id:53197 Campylobacter hyointestinalis subsp. lawsonii strain CHY4 an prokMSA_id:56461 Campylobacter lanienae prokMSA_id:57346 Campylobacter lanienae strain S-K FAVW prokMSA_id:64363 Campylobacter lanienae prokMSA_id:64364 Campylobacter lanienae prokMSA_id:75078 Campylobacter lanienae isolate G718b prokMSA_id:86812 Campylobacter lanienae AY288304 2.28.5.3.4.10532 OTU 7 seqs prokMSA_id:11200 Campylobacter hyointestinalis subsp. hyointestinalis str. 04 prokMSA_id:11201 Campylobacter hyointestinalis subsp. hyointestinalis str. 09 prokMSA_id:11202 Campylobacter hyointestinalis subsp. hyointestinalis NCTC 11 prokMSA_id:11203 Campylobacter hyointestinalis subsp. hyointestinalis str. SV prokMSA_id:64355 Campylobacter hyointestinalis strain H00/108 prokMSA_id:69901 Campylobacter fetus MGH 97-2126 prokMSA_id:70687 Campylobacter hyointestinalis 2.28.5.3.4.10549 OTU 8 seqs prokMSA_id:55374 Campylobacter upsaliensis strain G1104 prokMSA_id:57362 Campylobacter upsaliensis strain L 461 prokMSA_id:57364 Campylobacter upsaliensis strain H53 E/ccda prokMSA_id:57365 Campylobacter upsaliensis strain H29 prokMSA_id:57367 Campylobacter upsaliensis strain H37 E/1 prokMSA_id:57368 Campylobacter upsaliensis strain LMG 8851 prokMSA_id:60770 Campylobacter upsaliensis strain LMG 8850 prokMSA_id:70846 Campylobacter upsaliensis strain WH6 2.28.5.3.4.10597 OTU 1 seq prokMSA_id:28244 epsilon 1068 2.28.5.3.4.10613 OTU 1 seq prokMSA_id:57366 Campylobacter upsaliensis strain LMG 8853 2.28.5.4 ENVIRONMENTAL_CLONE_A21N_GROUP 1 seq 2.28.5.4.10592 OTU 1 seq prokMSA_id:34401 clone GIF10 2.28.6 UNCULTURED_MAGNETOTACTIC_CLONES 27 seqs 2.28.6.1005 OTU 1 seq prokMSA_id:11284 clone CS408 2.28.6.1008 OTU 1 seq prokMSA_id:11285 clone CS105 2.28.6.1011 OTU 1 seq prokMSA_id:11287 clone MP17 2.28.6.1009 OTU 1 seq prokMSA_id:11286 Pele's Vents clone PVB_13 2.28.6.317 OTU 1 seq prokMSA_id:81623 clone KD8-87 2.28.6.338 OTU 1 seq prokMSA_id:27505 clone:TYM--20 2.28.6.507 OTU 1 seq prokMSA_id:18643 Red Sea KT-2K34 2.28.6.535 OTU 2 seqs prokMSA_id:11280 str. rj516 prokMSA_id:11283 str. rj12 2.28.6.538 OTU 1 seq prokMSA_id:28900 delta MERTZ_2CM_26 2.28.6.575 OTU 3 seqs prokMSA_id:11279 str. rj520 prokMSA_id:11281 str. rj517 prokMSA_id:11282 str. rj58 2.28.6.781 OTU 1 seq prokMSA_id:34904 clone KS67 2.28.6.8 OTU 1 seq prokMSA_id:49157 alpha B2M68 2.28.6.851 OTU 1 seq prokMSA_id:27771 actinobacterium MERTZ_2CM_246 2.28.6.889 OTU 1 seq prokMSA_id:11266 str. rj53 2.28.6.890 OTU 1 seq prokMSA_id:11268 str. pa19 2.28.6.891 OTU 1 seq prokMSA_id:11269 magnetotactic clone Cs103 2.28.6.928 OTU 1 seq prokMSA_id:11270 clone CS93 2.28.6.934 OTU 1 seq prokMSA_id:11272 str. pa119 2.28.6.936 OTU 1 seq prokMSA_id:11273 magnetotactic clone Cs310 2.28.6.954 OTU 1 seq prokMSA_id:11277 clone BURTON-17 2.28.6.957 OTU 1 seq prokMSA_id:11278 str. BD2-11 2.28.6.970 OTU 2 seqs prokMSA_id:11262 magnetotactic clone Cs308 prokMSA_id:11263 clone CS106 2.28.6.997 OTU 1 seq prokMSA_id:52165 marine pN1-33 2.29 FUSOBACTERIA_AND_RELATIVES 91 seqs 2.29.1 LPT.BUCCALIS_SUBGROUP 32 seqs 2.29.1.1057 OTU 3 seqs prokMSA_id:71467 Leptotrichia sp. LB11 prokMSA_id:71541 Leptotrichia sp. 'Wee Tee 1999' AF206305 prokMSA_id:71923 Leptotrichia sp. LB06 2.29.1.1081 OTU 2 seqs prokMSA_id:11297 Leptotrichia sp prokMSA_id:49525 Leptotrichia sp. oral clone DA069 2.29.1.116 OTU 1 seq prokMSA_id:38061 Leptotrichia sp. oral clone F138 2.29.1.120 OTU 1 seq prokMSA_id:31235 Leptotrichia sp. oral clone FP036 2.29.1.231 OTU 2 seqs prokMSA_id:11292 Streptobacillus moniliformis str. ANL 370-1 prokMSA_id:11293 Streptobacillus moniliformis ATCC 14647 2.29.1.285 OTU 2 seqs prokMSA_id:32203 Leptotrichia sp. oral clone BU064 prokMSA_id:70628 Leptotrichia sp. clone DT031 AF366276 2.29.1.342 OTU 2 seqs prokMSA_id:73096 Leptotrichia sp. clone DE081 prokMSA_id:74059 Leptotrichia sp. LB37 2.29.1.35 OTU 1 seq prokMSA_id:70038 Leptotrichia sp. oral clone EI013 2.29.1.367 OTU 1 seq prokMSA_id:29566 Cf. Leptotrichia sp. AMN-1 2.29.1.368 OTU 1 seq prokMSA_id:11291 Sebaldella termitidis ATCC 33386 2.29.1.387 OTU 3 seqs prokMSA_id:51437 Leptotrichia sp. oral isolate A39FD prokMSA_id:70804 Leptotrichia sp. LB16 prokMSA_id:74297 Leptotrichia sp. LB32 2.29.1.389 OTU 1 seq prokMSA_id:11299 str. AVG 2115 2.29.1.455 OTU 1 seq prokMSA_id:73887 Leptotrichia sp. oral clone EI022 2.29.1.558 OTU 2 seqs prokMSA_id:11298 Leptotrichia microbii. L37789 prokMSA_id:58542 Sneathia sanguinegens strain CCUG 41628T 2.29.1.690 OTU 1 seq prokMSA_id:71850 Leptotrichia sp. LB57 2.29.1.694 OTU 1 seq prokMSA_id:74391 Leptotrichia sp. oral clone DR011 2.29.1.721 OTU 1 seq prokMSA_id:83573 Leptotrichia sp. oral clone P2PB_51 P1 2.29.1.779 OTU 3 seqs prokMSA_id:37488 Leptotrichia sp. oral strain FAC5 prokMSA_id:70629 Leptotrichia sp. LB23 prokMSA_id:71688 Human oral AC60 2.29.1.967 OTU 3 seqs prokMSA_id:20731 E1-K6 prokMSA_id:42256 Leptotrichia sp. oral clone FB074 AF385542 prokMSA_id:73108 Leptotrichia-like sp. oral clone BB002 AF287807 2.29.2 PRG.MODESTUM_SUBGROUP 11 seqs 2.29.2.1034 OTU 1 seq prokMSA_id:41139 Ilyobacter tartaricus DSM 2382 T 2.29.2.348 OTU 1 seq prokMSA_id:52873 Ilyobacter insuetus DSM 6831 T 2.29.2.364 OTU 1 seq prokMSA_id:11301 Propionigenium modestum 2.29.2.426 OTU 2 seqs prokMSA_id:57456 Fusobacteria clone P. palm C/A 63 prokMSA_id:76867 Fusobacteria Ko711 2.29.2.590 OTU 1 seq prokMSA_id:16867 Fusobacterium kps68f 2.29.2.644 OTU 1 seq prokMSA_id:31785 Ilyobacter polytropus DSM 2926 T 2.29.2.716 OTU 3 seqs prokMSA_id:11300 Propionigenium maris str. 10succ1 DSM 9537 prokMSA_id:34513 Propionigenium maris strain ML-1 prokMSA_id:42042 Propionigenium maris strain DSL-1 2.29.2.724 OTU 1 seq prokMSA_id:57439 Fusobacteria clone P. palm A 11 2.29.3 CETOBACTERIUM.CETI 1 seq 2.29.3.378 OTU 1 seq prokMSA_id:11302 Cetobacterium ceti str. M-3333 NCFB 3026 2.29.5 FUSOBACTERIA_GROUP 47 seqs 2.29.5.451 OTU 1 seq prokMSA_id:11319 Clostridium rectum NCIMB 10651 2.29.5.488 OTU 41 seqs prokMSA_id:11306 Fusobacterium simiae ATCC 33568 . X55407 prokMSA_id:11308 Fusobacterium nucleatum subsp. animalis NCTC 12276 . X55404 prokMSA_id:11314 Fusobacterium simiae ATCC 33568 . M58685 prokMSA_id:11315 Fusobacterium periodonticum str. EK1-15 ATCC 33693 . X55405 prokMSA_id:11316 Fusobacterium nucleatum subsp. vincentii ATCC 49256 prokMSA_id:11317 Fusobacterium naviforme str. DMS 20699 NCTC 11464 prokMSA_id:11318 Fusobacterium nucleatum subsp. fusiforme NCTC 11326 . X55403 prokMSA_id:11320 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 . X55401 prokMSA_id:11324 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 . X554 prokMSA_id:11330 Fusobacterium alocis ATCC 35896 . X55406 prokMSA_id:20351 Fusobacterium sp. oral clone CZ006 prokMSA_id:28718 Human oral AC59 prokMSA_id:30752 Fusobacterium sp. oral clone AJ050 prokMSA_id:34568 Fusobacterium nucleatum subsp. nucleatum prokMSA_id:39148 clone 33-FL60B98 prokMSA_id:40432 Fusobacterium sp. oral clone I035 prokMSA_id:41933 Fusobacterium sp. oral clone EU021 prokMSA_id:46013 Fusobacterium sp. clone BS019 prokMSA_id:52269 Fusobacterium sp. oral clone CY024 prokMSA_id:58280 Fusobacterium nucleatum prokMSA_id:59567 Fusobacterium sp. oral clone EX162 prokMSA_id:59571 Fusobacterium sp. oral clone EX123 prokMSA_id:64396 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 complete prokMSA_id:68347 Fusobacterium nucleatum E9_12 subphylotype-E1 oral isolate prokMSA_id:70705 E1-K5 prokMSA_id:72547 Fusobacterium sp. oral clone BS011 prokMSA_id:72688 E1-K4 prokMSA_id:72772 Fusobacterium nucleatum subsp. polymorphum AF287812 prokMSA_id:73310 Fusobacterium sp. oral clone R002 prokMSA_id:77649 Fusobacterium nucleatum subsp. canifelium strain RMA 11693 prokMSA_id:77942 Fusobacterium nucleatum subsp. canifelium strain RMA 1036 prokMSA_id:78038 Fusobacterium nucleatum subsp. canifelium strain RMA 12701 prokMSA_id:78238 Fusobacterium nucleatum subsp. canifelium strain RMA 12708 prokMSA_id:79662 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03 prokMSA_id:80083 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03 prokMSA_id:80842 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03 prokMSA_id:87941 Fusobacterium genomosp. C2 AY278617 prokMSA_id:88459 Fusobacterium sp. isolate PCR amplicon RL 2253 AY325760 prokMSA_id:94529 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03 prokMSA_id:94655 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03 prokMSA_id:95128 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03 2.29.5.739 OTU 4 seqs prokMSA_id:11305 Fusobacterium necrophorum str. FnS-1; biotype AB prokMSA_id:11309 Fusobacterium necrophorum str. FnS40; biotype B prokMSA_id:11310 Fusobacterium necrophorum str. D4 prokMSA_id:34266 Fusobacterium equorum strain horse 2.29.5.805 OTU 1 seq prokMSA_id:57457 green non-sulfur clone P. palm C/A 25 2.30 GRAM_POSITIVE_BACTERIA 8712 seqs 2.30.1 HIGH_G+C_BACTERIA 3071 seqs 2.30.1.1 ENVIRONMENTAL_CLONE_WCHA1-48_GROUP 2 seqs 2.30.1.1.1439 OTU 1 seq prokMSA_id:11332 clone WCHA1-48 2.30.1.1.1453 OTU 1 seq prokMSA_id:11334 clone WCHA1-78 2.30.1.3 ENVIRONMENTAL_CLONE_MC4_GROUP 6 seqs 2.30.1.3.1233 OTU 2 seqs prokMSA_id:26545 Metal-contaminated soil clone K20-25 prokMSA_id:76917 earthworm cast clone c229 2.30.1.3.1480 OTU 1 seq prokMSA_id:11341 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.30.1.3.1515 OTU 1 seq prokMSA_id:11350 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.30.1.3.1707 OTU 1 seq prokMSA_id:76799 Rubrobacteridae clone WYO30C 2.30.1.3.1993 OTU 1 seq prokMSA_id:52274 clone SM1H04 2.30.1.4 RBB.RADIOTOLERANS_GROUP 26 seqs 2.30.1.4.1107 OTU 3 seqs prokMSA_id:11357 Rubrobacter xylanophilus str. PRD-1 DSM 9941 . X87135 prokMSA_id:11360 Rubrobacter xylanophilus str. RSPS-15. AJ243871 prokMSA_id:48248 actinobacterium clone pD4 2.30.1.4.1115 OTU 1 seq prokMSA_id:41603 Hb7-K4 2.30.1.4.1127 OTU 1 seq prokMSA_id:75312 actinobacterium clone JG37-AG-21 2.30.1.4.1149 OTU 1 seq prokMSA_id:77189 clone C17.11WL 2.30.1.4.1210 OTU 2 seqs prokMSA_id:32106 Rubrobacter taiwanensis strain LS-286 prokMSA_id:36731 Rubrobacter taiwanensis 2.30.1.4.1235 OTU 2 seqs prokMSA_id:50362 Hb7-K2 prokMSA_id:69907 Hb7-K1 2.30.1.4.1248 OTU 4 seqs prokMSA_id:11352 Rubrobacter radiotolerans DSM 46359 prokMSA_id:11353 Rubrobacter radiotolerans JCM 2153 prokMSA_id:11354 Rubrobacter radiotolerans str. RALC-4 prokMSA_id:11355 Rubrobacter radiotolerans DSM 5868 2.30.1.4.1298 OTU 1 seq prokMSA_id:50933 Rubrobacter sp. QSSC8L-10 2.30.1.4.1313 OTU 1 seq prokMSA_id:84551 actinobacterium clone FBP269 2.30.1.4.1539 OTU 1 seq prokMSA_id:11358 clone TM220 2.30.1.4.1551 OTU 1 seq prokMSA_id:58144 Ellin301 2.30.1.4.1612 OTU 1 seq prokMSA_id:82554 actinobacterium clone FBP483 2.30.1.4.1611 OTU 1 seq prokMSA_id:71641 Hb7-K3 2.30.1.4.1634 OTU 1 seq prokMSA_id:16588 Q3-6C1 2.30.1.4.1762 OTU 1 seq prokMSA_id:47665 antarctic soil clone bh3.17 2.30.1.4.1892 OTU 1 seq prokMSA_id:32989 #0319-7H2 2.30.1.4.1919 OTU 1 seq prokMSA_id:19651 #0319-2J16 2.30.1.4.1980 OTU 1 seq prokMSA_id:70612 soil clone 480-2 2.30.1.4.2060 OTU 1 seq prokMSA_id:17393 #0319-7D8 2.30.1.5 ATOPOBIUM_GROUP 57 seqs 2.30.1.5.2 ATP.MINUTUM_SUBGROUP 57 seqs 2.30.1.5.2.1095 OTU 1 seq prokMSA_id:39422 clone RFLP 21E 2.30.1.5.2.1112 OTU 1 seq prokMSA_id:27160 clone p-3423-SwA2 2.30.1.5.2.1145 OTU 3 seqs prokMSA_id:11374 Denitrobacterium detoxificans str. NPOH2 prokMSA_id:11375 Denitrobacterium detoxificans str. NPOH3 prokMSA_id:11376 Denitrobacterium detoxificans str. MAJ1 2.30.1.5.2.1220 OTU 5 seqs prokMSA_id:25274 Collinsella sp. RCA55-54 prokMSA_id:36110 Collinsella sp. RCA55-27 prokMSA_id:36306 Collinsella sp. RCA55-4 prokMSA_id:37392 Collinsella sp. RCA55-49 prokMSA_id:38088 Collinsella sp. RCA55-34 2.30.1.5.2.1226 OTU 3 seqs prokMSA_id:11382 Atopobium parvulum str. 1246 ATCC 33793 prokMSA_id:11383 Atopobium parvulum str. 1246 ATCC 33793 . X67150 prokMSA_id:35187 Atopobium parvulum 2.30.1.5.2.1255 OTU 1 seq prokMSA_id:23706 Collinsella sp. RCA55-58 2.30.1.5.2.1258 OTU 1 seq prokMSA_id:76995 actinobacterium clone S15A-MN25 2.30.1.5.2.1294 OTU 1 seq prokMSA_id:60552 Olsenella sp. clone 1+7-15 2.30.1.5.2.1383 OTU 2 seqs prokMSA_id:11380 Atopobium minutum NCFB 2751 prokMSA_id:74853 Lactobacillus minutus 1454 nt 2.30.1.5.2.1382 OTU 5 seqs prokMSA_id:11371 Eggerthella lenta DSM 2243 prokMSA_id:11372 lentum JCM 9979 prokMSA_id:16304 Eggerthella lenta prokMSA_id:34668 Eggerthella sp. MLG043 AF304434 prokMSA_id:72748 str. 82345 AF227849 2.30.1.5.2.1459 OTU 1 seq prokMSA_id:78283 Actinobacteridae clone:Rs-J59 2.30.1.5.2.1476 OTU 1 seq prokMSA_id:42971 clone:BCf9-11 2.30.1.5.2.1485 OTU 1 seq prokMSA_id:31818 Coriobacterium sp. EKSO3 strain EKSO3 2.30.1.5.2.1510 OTU 1 seq prokMSA_id:29393 Olsenella profusa 2.30.1.5.2.1659 OTU 1 seq prokMSA_id:35301 Atopobium oviles strain A2 2.30.1.5.2.1784 OTU 1 seq prokMSA_id:32126 clone p-275-o5 2.30.1.5.2.1790 OTU 4 seqs prokMSA_id:24647 Collinsella sp. RCA55-56 prokMSA_id:38784 Collinsella sp. RCA56-80 prokMSA_id:44613 Collinsella sp. RCA55-5 prokMSA_id:46935 Collinsella sp. RCA56-68 2.30.1.5.2.1800 OTU 1 seq prokMSA_id:75442 actinobacterium clone S15A-MN100 2.30.1.5.2.1816 OTU 2 seqs prokMSA_id:26994 ckncm222-F4M.2B5 prokMSA_id:46672 ckncm193-F4M.1A3 2.30.1.5.2.1898 OTU 1 seq prokMSA_id:78335 Actinobacteridae clone:Rs-J10 2.30.1.5.2.1924 OTU 4 seqs prokMSA_id:11381 Atopobium rimae str. VPI D140H-11A NCFB 2896 . S44205 prokMSA_id:11384 Atopobium rimae str. VPI D140H-11A NCFB 2896 prokMSA_id:25658 Atopobium sp. oral clone C019 prokMSA_id:30853 Atopobium rimae 2.30.1.5.2.1926 OTU 1 seq prokMSA_id:11369 aerofaciens JCM 7791 2.30.1.5.2.1958 OTU 1 seq prokMSA_id:43946 Atopobium sp. strain CCUG 38953 2.30.1.5.2.1959 OTU 1 seq prokMSA_id:11366 Slackia exigua str. S-7 ATCC 700122 2.30.1.5.2.1956 OTU 1 seq prokMSA_id:11364 Slackia heliotrinireducens str. RHS 1 NCTC 11029 2.30.1.5.2.1962 OTU 1 seq prokMSA_id:11367 Coriobacterium glomerans DSM 20642 2.30.1.5.2.1963 OTU 1 seq prokMSA_id:11368 aerofaciens JCM 7790 2.30.1.5.2.2001 OTU 1 seq prokMSA_id:42186 rumen 4C3d-3 2.30.1.5.2.2012 OTU 1 seq prokMSA_id:11379 JCM 9981 2.30.1.5.2.2021 OTU 1 seq prokMSA_id:77607 Actinobacteridae clone:Rs-D41 2.30.1.5.2.2027 OTU 1 seq prokMSA_id:37460 equine intestinal sp. ML10 clone ML10 2.30.1.5.2.2032 OTU 1 seq prokMSA_id:51091 1 from Patent WO9935240 2.30.1.5.2.2046 OTU 5 seqs prokMSA_id:11370 aerofaciens JCM 10188 prokMSA_id:17210 Collinsella aerofaciens strain G118 prokMSA_id:23981 Collinsella aerofaciens strain H818 prokMSA_id:49599 Coriobacterium sp. strain CCUG 33918 prokMSA_id:74735 Coriobacterium sp. strain CCUG 33917 2.30.1.6 ACIDIMICROBIUM_GROUP 62 seqs 2.30.1.6.1 ENVIRONMENTAL_CLONE_BDA1-5_SUBGROUP 2 seqs 2.30.1.6.1.1400 OTU 2 seqs prokMSA_id:11388 Sargasso Sea 10m depth clone BDA1-5 prokMSA_id:53645 sp. amplified from marine plankton 5' end clone BDA1-5A 2.30.1.6.2 A.FERROOXIDANS_SUBGROUP 60 seqs 2.30.1.6.2.1090 OTU 1 seq prokMSA_id:58319 Acidimicrobium sp. Y0018 2.30.1.6.2.1113 OTU 1 seq prokMSA_id:35149 clone 25/4-10 2.30.1.6.2.1118 OTU 1 seq prokMSA_id:31042 maize root Zmrc215 2.30.1.6.2.1155 OTU 2 seqs prokMSA_id:37993 Ferromicrobium acidophilum prokMSA_id:58323 clone ASL4 2.30.1.6.2.1201 OTU 1 seq prokMSA_id:60177 clone TK39 2.30.1.6.2.1211 OTU 1 seq prokMSA_id:56590 clone RCP1-34 2.30.1.6.2.1256 OTU 1 seq prokMSA_id:79537 clone ZA3612c 2.30.1.6.2.1282 OTU 5 seqs prokMSA_id:11394 clone TM208 prokMSA_id:11398 clone TM232 prokMSA_id:11401 clone TM81 prokMSA_id:63226 clone FW103 prokMSA_id:75499 actinobacterium clone JG37-AG-8 2.30.1.6.2.1283 OTU 1 seq prokMSA_id:47937 ARFS-2 2.30.1.6.2.1288 OTU 1 seq prokMSA_id:43490 BA84 2.30.1.6.2.1318 OTU 1 seq prokMSA_id:48649 thermal soil clone YNPFFP40 2.30.1.6.2.1367 OTU 2 seqs prokMSA_id:22795 gold mine D7 prokMSA_id:41102 gold mine D27 2.30.1.6.2.1370 OTU 1 seq prokMSA_id:63306 clone RCP1-37 2.30.1.6.2.1392 OTU 1 seq prokMSA_id:63313 clone RCP1-77 2.30.1.6.2.1391 OTU 1 seq prokMSA_id:11400 clone TM62 2.30.1.6.2.1407 OTU 2 seqs prokMSA_id:11404 clone WB003 prokMSA_id:11413 clone WB012 2.30.1.6.2.1408 OTU 1 seq prokMSA_id:11402 clone UC32f 2.30.1.6.2.1418 OTU 1 seq prokMSA_id:11406 clone WB005 2.30.1.6.2.1415 OTU 1 seq prokMSA_id:11405 clone WB004 2.30.1.6.2.1419 OTU 1 seq prokMSA_id:11408 clone WB007 2.30.1.6.2.1433 OTU 1 seq prokMSA_id:11409 clone WB008 2.30.1.6.2.1471 OTU 1 seq prokMSA_id:11411 clone WB010 2.30.1.6.2.1469 OTU 1 seq prokMSA_id:11410 clone WB009 2.30.1.6.2.1477 OTU 1 seq prokMSA_id:11412 clone WB011 2.30.1.6.2.1478 OTU 1 seq prokMSA_id:11414 clone WB014 2.30.1.6.2.1499 OTU 1 seq prokMSA_id:11419 Acidimicrobium ferrooxidans str. ICP DSM 10331 2.30.1.6.2.1498 OTU 1 seq prokMSA_id:11417 clone WB017 2.30.1.6.2.1511 OTU 1 seq prokMSA_id:11395 clone TM210 2.30.1.6.2.1525 OTU 1 seq prokMSA_id:11397 clone TM226 2.30.1.6.2.1524 OTU 1 seq prokMSA_id:11396 clone TM213 2.30.1.6.2.1532 OTU 1 seq prokMSA_id:11399 clone TM56 2.30.1.6.2.1538 OTU 1 seq prokMSA_id:11421 Microthrix parvicella 2.30.1.6.2.1576 OTU 1 seq prokMSA_id:56545 actinobacterium clone ML817J-10 2.30.1.6.2.1588 OTU 1 seq prokMSA_id:25801 firmicute ARCT1-16 2.30.1.6.2.1666 OTU 2 seqs prokMSA_id:60151 clone TK99 prokMSA_id:60183 clone TK06 AJ347026 2.30.1.6.2.1721 OTU 1 seq prokMSA_id:65445 clone a13156 2.30.1.6.2.1749 OTU 2 seqs prokMSA_id:63303 clone RCP2-2 prokMSA_id:63304 clone RCP2-57 2.30.1.6.2.1765 OTU 1 seq prokMSA_id:85916 actinobacterium clone DBBB-76 2.30.1.6.2.1791 OTU 1 seq prokMSA_id:84258 clone CCM13a 2.30.1.6.2.1806 OTU 1 seq prokMSA_id:21549 CtaxTah-23 2.30.1.6.2.1853 OTU 1 seq prokMSA_id:75774 clone JG34-KF-316 2.30.1.6.2.1851 OTU 1 seq prokMSA_id:29204 actinobacterium clone R106 2.30.1.6.2.1856 OTU 1 seq prokMSA_id:63307 clone RCP2-105 2.30.1.6.2.1914 OTU 1 seq prokMSA_id:41413 clone SL22 2.30.1.6.2.1950 OTU 2 seqs prokMSA_id:45131 #0319-7G19 prokMSA_id:53975 #0319-7F18 2.30.1.6.2.1964 OTU 2 seqs prokMSA_id:60627 firmicute clone AEGEAN_247 prokMSA_id:60629 firmicute clone AEGEAN_241 2.30.1.6.2.2014 OTU 1 seq prokMSA_id:63126 clone MB-A2-100 2.30.1.6.2.2030 OTU 1 seq prokMSA_id:63305 clone RCP1-33 2.30.1.6.2.2031 OTU 1 seq prokMSA_id:63308 clone RCP1-83 2.30.1.7 FRANKIA_GROUP 97 seqs 2.30.1.7.1 GDP.OBSCURUS_ASSEMBLAGE 22 seqs 2.30.1.7.1.1188 OTU 2 seqs prokMSA_id:11431 str. rJ7 prokMSA_id:11450 str. rJ14 2.30.1.7.1.1245 OTU 1 seq prokMSA_id:51600 Geodermatophilus sp. IM-1092 2.30.1.7.1.1560 OTU 1 seq prokMSA_id:11426 clone TM262 2.30.1.7.1.1581 OTU 4 seqs prokMSA_id:20090 Actinoplanes minutisporangius AB037007 prokMSA_id:32913 Actinoplanes aurantiacus strain IMSNU 22120 prokMSA_id:37020 Actinoplanes aurantiacus prokMSA_id:39565 Actinoplanes minutisporangius 2.30.1.7.1.1694 OTU 1 seq prokMSA_id:11440 Geodermatophilus obscurus subsp. dictyosporus DSM 43161 2.30.1.7.1.1742 OTU 7 seqs prokMSA_id:11425 Blastococcus aggregatus ATCC 25902 prokMSA_id:11427 str. G1S leachate of a landfill Vancouver Canada prokMSA_id:18910 Blastococcus sp. BC448 prokMSA_id:40121 Blastococcus aggregatus strain DSM 4725T prokMSA_id:43433 Blastococcus sp. BC517 prokMSA_id:46074 Blastococcus sp. BC512 prokMSA_id:74541 Blastococcus sp. BC521 2.30.1.7.1.1822 OTU 2 seqs prokMSA_id:69307 Actinomycetales GP-5 prokMSA_id:71987 Actinobacterium GP-6 2.30.1.7.1.1920 OTU 1 seq prokMSA_id:73670 ARFS-5 2.30.1.7.1.1973 OTU 1 seq prokMSA_id:11435 str. A7S basalt outcrop Sonora desert USA 2.30.1.7.1.1985 OTU 1 seq prokMSA_id:11438 str. G6 white marble Athens Greece 2.30.1.7.1.2015 OTU 1 seq prokMSA_id:11444 Cryptosporangium japonicum str. YU 636-3 IFO 15966 2.30.1.7.2 SCH.POLYMORPHA_SUBGROUP 13 seqs 2.30.1.7.2.1223 OTU 4 seqs prokMSA_id:11449 Sporichthya polymorpha DSM 46113 prokMSA_id:11451 Sporichthya polymorpha IFO 12702 prokMSA_id:25897 actinomycete isolate YU 736-21 prokMSA_id:73031 Sporichthya brevicatena 2.30.1.7.2.1348 OTU 1 seq prokMSA_id:86523 actinobacterium clone FBP406 2.30.1.7.2.1506 OTU 1 seq prokMSA_id:70691 clone 404-57 2.30.1.7.2.1571 OTU 1 seq prokMSA_id:45664 FukuS81 2.30.1.7.2.1701 OTU 2 seqs prokMSA_id:32457 ARFS-21 prokMSA_id:34574 ARFS-24 2.30.1.7.2.1886 OTU 1 seq prokMSA_id:38121 clone 25/5-66 2.30.1.7.2.2058 OTU 1 seq prokMSA_id:30865 clone 1405-72 2.30.1.7.2.2054 OTU 1 seq prokMSA_id:37747 Gram-positive SOGA22 2.30.1.7.2.2062 OTU 1 seq prokMSA_id:34253 sp. clone 1404-31 2.30.1.7.4 FRANKIA_SUBGROUP 62 seqs 2.30.1.7.4.1094 OTU 1 seq prokMSA_id:11618 clone ACE-33 2.30.1.7.4.1105 OTU 1 seq prokMSA_id:11620 Frankia sp 2.30.1.7.4.1121 OTU 1 seq prokMSA_id:11621 str. Alnus rhizosphere soil amplicon 2.30.1.7.4.1122 OTU 1 seq prokMSA_id:11622 str. Alnus rhizosphere soil amplicon 2.30.1.7.4.1161 OTU 10 seqs prokMSA_id:11453 Frankia sp. str. ARgP5 prokMSA_id:11540 Frankia sp. str. CeD ORS 020606 prokMSA_id:11624 Frankia sp. str. Darj16 prokMSA_id:11626 Frankia sp. str. Shil19 prokMSA_id:11637 Frankia sp. str. AVN17s prokMSA_id:11682 Frankia sp. str. Darj18 prokMSA_id:11692 Frankia "myricanod" prokMSA_id:11704 Frankia FE12 str. FE12 prokMSA_id:22175 Frankia sp. M16464 isolate M16464 prokMSA_id:34093 Frankia sp. MRn2-2 isolate MRn2-2 2.30.1.7.4.1169 OTU 1 seq prokMSA_id:11632 clone TM187 2.30.1.7.4.1166 OTU 1 seq prokMSA_id:11631 clone TM112 2.30.1.7.4.1171 OTU 1 seq prokMSA_id:11633 clone WB013 2.30.1.7.4.1206 OTU 2 seqs prokMSA_id:19440 actinobacterium clone R18 prokMSA_id:85254 Arsenophonus endosymbiont of Dermacentor variabilis isolate 2.30.1.7.4.1238 OTU 2 seqs prokMSA_id:42760 clone Ebpr21 prokMSA_id:44017 Gemmimonas aurantiaca AB072735 2.30.1.7.4.1286 OTU 8 seqs prokMSA_id:11503 Frankia sp. str. Ea1-28 prokMSA_id:11534 Frankia sp. str. HR27-14 prokMSA_id:11535 Frankia sp prokMSA_id:11629 Frankia sp. str. SCN10a prokMSA_id:11630 Frankia sp. AF063642 prokMSA_id:42219 Frankia sp. Sn5-8 isolate Sn5-8 prokMSA_id:93808 Frankia sp. BMG5.12 strain BMG5.12 AJ549325 prokMSA_id:94110 Frankia sp. BMG5.4 strain BMG5.4 AJ549324 2.30.1.7.4.1330 OTU 1 seq prokMSA_id:11547 clone SAR432 2.30.1.7.4.1337 OTU 1 seq prokMSA_id:48548 #0425-2M17 2.30.1.7.4.1379 OTU 1 seq prokMSA_id:26582 #0319-7F3 2.30.1.7.4.1390 OTU 1 seq prokMSA_id:46349 actinobacterium MERTZ_21CM_170 2.30.1.7.4.1399 OTU 1 seq prokMSA_id:75656 clone Gitt-KF-183 2.30.1.7.4.1486 OTU 1 seq prokMSA_id:55589 clone MB-A2-108 2.30.1.7.4.1547 OTU 1 seq prokMSA_id:32487 actinobacterium MERTZ_21CM_319 2.30.1.7.4.1553 OTU 1 seq prokMSA_id:27048 #0319-6E4 2.30.1.7.4.1565 OTU 2 seqs prokMSA_id:75241 actinobacterium clone JG37-AG-115 prokMSA_id:76800 clone JG34-KF-418 2.30.1.7.4.1601 OTU 1 seq prokMSA_id:11638 clone Ep_T1.148 2.30.1.7.4.1605 OTU 1 seq prokMSA_id:11639 clone Ep_T1.235 2.30.1.7.4.1613 OTU 3 seqs prokMSA_id:36404 ARFS-9 prokMSA_id:43222 ARFS-15 prokMSA_id:50077 ARFS-34 2.30.1.7.4.1635 OTU 3 seqs prokMSA_id:11537 Frankia Cea1.3 str. Cea1.3 prokMSA_id:11538 Frankia Cea5.1 str. Cea5.1 prokMSA_id:40609 Frankia sp. M16386 isolate M16386 2.30.1.7.4.1643 OTU 1 seq prokMSA_id:11490 Frankia sp. str. Ag45/Mut15 2.30.1.7.4.1644 OTU 5 seqs prokMSA_id:11548 Frankia sp. str. ACoN24d prokMSA_id:11598 Frankia sp. str. AcN14a prokMSA_id:11625 Frankia sp. str. lawj13 prokMSA_id:18201 Frankia sp. M16467 isolate M16467 prokMSA_id:52184 Frankia sp. MpI1 isolate MpI1 2.30.1.7.4.1676 OTU 2 seqs prokMSA_id:80602 actinobacterium clone CF44 prokMSA_id:83329 Actinobacteridae clone ACF37 2.30.1.7.4.1695 OTU 1 seq prokMSA_id:83514 actinobacterium clone FBP417 2.30.1.7.4.1734 OTU 1 seq prokMSA_id:11593 clone UC43f 2.30.1.7.4.1733 OTU 1 seq prokMSA_id:11591 clone OPB41 2.30.1.7.4.1811 OTU 1 seq prokMSA_id:79512 clone ZA3111c 2.30.1.7.4.1994 OTU 1 seq prokMSA_id:11544 Frankia sp. str. AgB1-9 2.30.1.7.4.2047 OTU 1 seq prokMSA_id:44411 #0319-7G21 2.30.1.7.4.2050 OTU 1 seq prokMSA_id:11536 clone TM167 2.30.1.8 STREPTOMYCES_SUBDIVISION 597 seqs 2.30.1.8.1 STREPTOMYCES_AND_RELATIVES 356 seqs 2.30.1.8.1.1 STM.ALBUS_SUBSPECIES_ALBUS 1 seq 2.30.1.8.1.1.2057 OTU 1 seq prokMSA_id:11716 Streptomyces albus subsp. albus DSM 40313 2.30.1.8.1.2 STM.SCABIEI_SUBGROUP 128 seqs 2.30.1.8.1.2.1690 OTU 8 seqs prokMSA_id:11733 Streptomyces galbus DSM 40480 prokMSA_id:24460 Streptomyces griseochromogenes strain DSM 40499 prokMSA_id:27887 Streptomyces viridochromogenes prokMSA_id:34932 Streptomyces sp. EF-4 prokMSA_id:41535 Streptomyces bobili prokMSA_id:42621 Streptomyces sp. Sm22 strain Sm22 prokMSA_id:48947 Streptomyces sp. EF-25 prokMSA_id:69713 Streptomyces fimbriatus 2.30.1.8.1.2.1743 OTU 115 seqs prokMSA_id:11718 Streptomyces diastatochromogenes ATCC 12309 prokMSA_id:11721 str. SR 168 prokMSA_id:11723 Streptomyces scabiei str. SNS-26. D63864 prokMSA_id:11725 Streptomyces seoulensis str. IMSNU-1 IMSNU 21266 prokMSA_id:11729 Streptomyces sp. str. CFBP4531. AJ007428 prokMSA_id:11732 Streptomyces sp. str. 300 prokMSA_id:11734 Streptomyces Z2 str. Z2 prokMSA_id:11736 Streptomyces scabiei ATCC 49173 prokMSA_id:11737 Streptomyces bottropensis ATCC 25435 prokMSA_id:11738 Streptomyces sp. str. CFBP4521 prokMSA_id:11740 Streptomyces hygroscopicus prokMSA_id:11741 Streptomyces scabiei ATCC 33282. D63863 prokMSA_id:11742 Streptomyces sp. str. CFBP4497 prokMSA_id:11743 Streptomyces sp. str. CFBP4509 prokMSA_id:11744 Streptomyces sp. str. CFBP4508 prokMSA_id:11745 Streptomyces sp. str. CFBP4498 prokMSA_id:11746 Streptomyces scabies str. SSC101. Y15493 prokMSA_id:11747 Streptomyces scabies str. 364 prokMSA_id:11748 Streptomyces scabies str. 267. Y15500 prokMSA_id:11749 Streptomyces scabies str. 380. Y15506 prokMSA_id:11750 Streptomyces scabies str. 302. Y15508 prokMSA_id:11751 Streptomyces scabies str. 289. Y15509 prokMSA_id:11752 Streptomyces EF-73 prokMSA_id:11753 Streptomyces JL164 str. JL 164 prokMSA_id:11754 Streptomyces galbus prokMSA_id:11757 Streptomyces virginiae IFO 3729 prokMSA_id:11758 Streptomyces lavendulae subsp. lavendulae IFO 3145. D85107 prokMSA_id:11760 Streptomyces lavendulae subsp. lavendulae IFO 13709. D85115 prokMSA_id:11762 Streptomyces sp. str. GP 772; isolate E. Atalan A46R47 prokMSA_id:11765 Streptomyces sp. str. B71277 prokMSA_id:11773 Streptomyces ASB27 str. ASB27 prokMSA_id:11777 Streptomyces microstreptospora IFO 14669 prokMSA_id:11800 Streptomyces sp. str. GP 770; isolate E. Atalan A46R51 prokMSA_id:11804 Streptomyces sp. str. GP 773; isolate E. Atalan A81319 prokMSA_id:11805 Streptomyces sp. str. A46R62 prokMSA_id:11817 Streptomyces virginiae IFO 12827 . D85123 prokMSA_id:11858 Streptomyces albulus str. MF861-C4 prokMSA_id:16585 Streptomyces sp. A14P1 S17 AJ391830 prokMSA_id:16715 Streptomyces sp. NRRL 2834 prokMSA_id:19036 Streptomyces sp. LS-A24 AF474177 prokMSA_id:20194 Streptomyces sp. B13P3 S35 prokMSA_id:20285 Streptomyces sp. EF-79 AF112167 prokMSA_id:21602 Streptomyces argillaceus prokMSA_id:23098 Streptomyces sp. NRRL 5182 AJ391815 prokMSA_id:24056 Streptomyces sp. D13P3 S23 prokMSA_id:26657 Streptomyces sp. EF-52 prokMSA_id:30552 Streptomyces bottropensis strain LE-3A AF397893 prokMSA_id:30608 Streptomyces scabiei strain SBH-3 AF385185 prokMSA_id:31047 Streptomyces sp. strain 346 prokMSA_id:32361 Streptomyces sp. S78 prokMSA_id:32477 Streptomyces sp. DNK-G02 AF385182 prokMSA_id:32576 Streptomyces tauricus prokMSA_id:35613 Streptomyces scabiei strain S33 prokMSA_id:35664 Streptomyces sp. KN-1220 prokMSA_id:36466 Streptomyces sp. C9P3 S4 AJ391828 prokMSA_id:38469 Streptomyces kathirae prokMSA_id:40593 soil clone 1056-2 prokMSA_id:42266 Streptomyces sp. C4R3 S3 AJ391827 prokMSA_id:42671 Streptomyces scabiei strain KD75173 AF385186 prokMSA_id:42859 Streptomyces sp. B22P3 S26 AJ391833 prokMSA_id:43763 Streptomyces sp. Soll53 strain Soll53 prokMSA_id:45302 Streptomyces sp. B7 prokMSA_id:46425 Streptomyces sp. 19504 prokMSA_id:47420 Streptomyces sp. EF-35 AF112154 prokMSA_id:47571 Streptomyces sp. LS-1 prokMSA_id:47677 Streptomyces hygroscopicus strain NRRL B-1477 prokMSA_id:47730 Streptomyces scabiei strain DNK-043 AF385183 prokMSA_id:49115 Streptomyces bottropensis strain LE-2 AF397892 prokMSA_id:49364 Streptomyces peucetius prokMSA_id:49929 Streptomyces scabiei strain B-4 AF385181 prokMSA_id:50088 Streptomyces sp. DNK-G10 AF385184 prokMSA_id:50437 Streptomyces cyaneus strain DSM 40108 prokMSA_id:50889 Streptomyces longisporus strain ISP 5166 prokMSA_id:51426 Streptomyces mirabilis strain ATCC27447 AF112180 prokMSA_id:51675 Streptomyces sp. YIM26 prokMSA_id:51904 Streptomyces somaliensis strain M29 prokMSA_id:51985 Streptomyces scabiei subsp. chosun prokMSA_id:52561 Streptomyces jumonjinensis prokMSA_id:53324 Streptomyces scabies 23S complete and strain:84232 AB026203 prokMSA_id:53328 Streptomyces scabies 23S complete and strain:CEK-037 AB02620 prokMSA_id:53367 Streptomyces scabies 23S complete and strain:ATCC 49173 AB02 prokMSA_id:53444 Streptomyces scabies 23S complete and strain:84102 AB026208 prokMSA_id:53580 Streptomyces scabies 23S complete and strain:E-2 AB026216 prokMSA_id:53692 Streptomyces scabies 23S complete and strain:8779 AB026209 prokMSA_id:54076 Streptomyces scabies 23S complete and strain:8770 AB026212 prokMSA_id:54131 Streptomyces scabies 23S complete and strain:SNS-26 AB026200 prokMSA_id:54153 Streptomyces scabies 23S complete and strain:RB2 AB026204 prokMSA_id:54184 Streptomyces bottropensis 23S complete and strain:ATCC 25435 prokMSA_id:54201 Streptomyces scabies 23S complete and strain:84174 AB026207 prokMSA_id:54425 Streptomyces scabies 23S complete and strain:8776 AB026213 prokMSA_id:54520 Streptomyces scabies 23S complete and strain:LQH-4 AB026211 prokMSA_id:54645 Streptomyces scabies 23S complete and strain:8722 AB026202 prokMSA_id:54735 Streptomyces scabies 23S complete and strain:ATCC 33282 AB02 prokMSA_id:54757 Streptomyces scabies 23S complete and strain:R90-3 AB026205 prokMSA_id:54792 Streptomyces scabies 23S complete and strain:E-1 AB026215 prokMSA_id:54803 Streptomyces scabies 23S complete and strain:LM5MT-2 AB02621 prokMSA_id:54981 Streptomyces scabies 23S complete and strain:DNK-G01 AB02621 prokMSA_id:56543 Streptomyces tumescens strain Km-2-1 complete prokMSA_id:58872 Actinobacterium '#59 white' prokMSA_id:62746 Streptomyces sp. C1 prokMSA_id:64271 Streptomyces sp. YU100 prokMSA_id:66692 Streptomyces griseoruber prokMSA_id:66695 Streptomyces aureus B7319 prokMSA_id:67018 Streptomyces phaeochromogenes prokMSA_id:67675 Streptomyces tumescens strain Cu-3-1 complete prokMSA_id:67676 Streptomyces tumescens strain Cu-2-1 complete prokMSA_id:67680 Streptomyces tumescens strain B-7-2 complete prokMSA_id:69890 Streptomyces peruviensis strain DSM 40592 prokMSA_id:71929 Streptomyces sp. 11709 prokMSA_id:77075 Streptomyces sp. GE 90852 strain GE 90852 prokMSA_id:77191 Streptomyces sp. EN57 prokMSA_id:77970 Streptomyces sp. TP-A0274 prokMSA_id:90342 Streptomyces sp. FXJ46 AY314783 prokMSA_id:90690 Streptomyces sp. FXJ04 AY314784 prokMSA_id:93822 Streptomyces cyaneogriseus AF503490 2.30.1.8.1.2.1941 OTU 1 seq prokMSA_id:33286 Streptomyces ushikuensis 2.30.1.8.1.2.1983 OTU 3 seqs prokMSA_id:11755 str. SR 70 prokMSA_id:27863 Streptomyces cinnabarinus strain ISP 5467 prokMSA_id:75046 Streptomyces sp. A3 2.30.1.8.1.2.2026 OTU 1 seq prokMSA_id:46555 Streptomyces sparsogenes strain NRRL 2940T 2.30.1.8.1.3 KTS.SETAE_SUBGROUP 76 seqs 2.30.1.8.1.3.1111 OTU 7 seqs prokMSA_id:11790 Kitasatospora brunnea IFO 14627 prokMSA_id:11815 Kitasatospora setae JCM 3304 prokMSA_id:20942 Kitasatospora setae prokMSA_id:26737 Kitasatospora sp. SK-3406 prokMSA_id:32241 Kitasatospora sp. SK-3412 prokMSA_id:40717 Kitasatospora sp. SK-3421 prokMSA_id:51815 Kitasatospora sp. SK-3255 2.30.1.8.1.3.1153 OTU 1 seq prokMSA_id:48363 AT425_EubY10 2.30.1.8.1.3.1229 OTU 5 seqs prokMSA_id:11793 str. JL 415 DSM 41754 prokMSA_id:11798 str. JL 134 prokMSA_id:11827 str. J 195 prokMSA_id:11828 str. JL 206 DSM 41755 prokMSA_id:11831 str. JL 83 DSM 41753 2.30.1.8.1.3.1274 OTU 1 seq prokMSA_id:11807 Trichotomospora caesia IFO 14562 2.30.1.8.1.3.1310 OTU 1 seq prokMSA_id:36230 Streptomyces beijiangensis 2.30.1.8.1.3.1325 OTU 2 seqs prokMSA_id:11829 str. CN 671 DSM 41752 prokMSA_id:11830 str. CN 668 2.30.1.8.1.3.1354 OTU 5 seqs prokMSA_id:11806 Streptomyces subrutilus DSM 40445 prokMSA_id:11808 Actinomyces sp. str. SR 25 prokMSA_id:11811 Streptomyces lavendulae subsp. lavendulae IFO 12344 prokMSA_id:44555 Streptomyces sp. So54 strain So54 prokMSA_id:62750 Streptomyces sp. P5 2.30.1.8.1.3.1375 OTU 1 seq prokMSA_id:72661 soil clone 228-1 2.30.1.8.1.3.1544 OTU 24 seqs prokMSA_id:11789 Kitasatospora phosalacinea str. KA-338 JCM 3340 prokMSA_id:11792 Kitasatospora streptosporus IFO 14362 prokMSA_id:11795 Kitasatospora paracochleata str. 14769 prokMSA_id:11796 Kitasatospora griseola str. AM-9660 JCM 3339 prokMSA_id:11797 Kitasatospora melanogena JCM 3337 prokMSA_id:11801 Kitasatospora azatica IFO 13803 prokMSA_id:11802 Kitasatospora kifunense JCM 9081 prokMSA_id:11816 Kitasatospora cheerisanensis str. YC75 prokMSA_id:11821 Kitasatospora cystarginea str. RK-419 JCM 7356 prokMSA_id:11823 Kitasatospora mediocidica IFO 14789. U93324 prokMSA_id:11824 Streptomyces aureofaciens str. A-377 NRRL 2209 prokMSA_id:11825 Kitasatospora C2 str. C2 prokMSA_id:11826 Streptomyces sp. str. 317 prokMSA_id:18850 Kitasatospora cystarginea prokMSA_id:23352 Kitasatospora sp. OM-5023 prokMSA_id:24904 Kitasatospora cochleata strain IFO 14768 prokMSA_id:27121 Streptomyces aureofaciens prokMSA_id:32322 Kitasatospora cochleata prokMSA_id:36266 Kitasatospora sp. PU22869 prokMSA_id:42735 Streptomyces sp. PR4.0307 prokMSA_id:45323 Kitasatospora griseola prokMSA_id:50005 Kitasatospora phosalacinea prokMSA_id:52818 Kitasatospora kifunense prokMSA_id:86939 Streptomyces sampliensis strain VT-36 AY260167 2.30.1.8.1.3.1617 OTU 1 seq prokMSA_id:35160 soil clone 41-1 2.30.1.8.1.3.1771 OTU 27 seqs prokMSA_id:11764 Streptomyces setonii ATCC 25497 prokMSA_id:11766 Streptomyces JCM7249 JCM 7249 prokMSA_id:11767 Streptomyces JCM7250 JCM 7250 prokMSA_id:11770 str. SR 119 prokMSA_id:11771 Streptomyces sp. str. 254 prokMSA_id:11772 Streptomyces ASSF22 str. ASSF22 prokMSA_id:11780 Streptomyces ASSF13 str. ASSF13 prokMSA_id:11787 Streptomyces griseus subsp. griseus str. 2247 prokMSA_id:11794 Streptomyces ornatus DSM 40307 prokMSA_id:17449 Streptomyces sp. So10 strain So10 prokMSA_id:19804 Streptomyces caviscabies strain ATCC51928 prokMSA_id:20768 Streptomyces sp. EF-91 prokMSA_id:30880 Streptomyces sp. KN-0479 prokMSA_id:31028 Streptomyces sp. OB-35 prokMSA_id:35011 Streptomyces sp. EF-93 prokMSA_id:35685 Streptomyces sp. Nm5 strain Nm5 prokMSA_id:38300 Streptomyces sp. S63 prokMSA_id:43555 Streptomyces sp. VTT E-99-1326 A4 prokMSA_id:45786 Streptomyces argenteolus prokMSA_id:50476 Streptomyces sp. YIM8 prokMSA_id:56621 Streptomyces sp. AS 4.1182 prokMSA_id:63868 Streptomyces flavogriseus strain CBS 101.34T prokMSA_id:66693 Streptomyces griseus subsp. griseus ISP 5236 prokMSA_id:73604 S.ornatus DSM 40307 prokMSA_id:75518 Streptomyces sp. EN23 prokMSA_id:76219 Streptomyces sp. A13 prokMSA_id:77539 Streptomyces caviscabies strain SAFR-024 2.30.1.8.1.3.1841 OTU 1 seq prokMSA_id:45079 Streptomyces olivaceus 2.30.1.8.1.4 STM.BIKINIENSIS_SUBGROUP 7 seqs 2.30.1.8.1.4.1786 OTU 7 seqs prokMSA_id:11832 Streptomyces bikiniensis DSM 40581 prokMSA_id:17191 Streptomyces venezuelae prokMSA_id:22704 Streptomyces sp. R22 prokMSA_id:27046 Streptomyces sp. KJ-72 complete prokMSA_id:34014 Streptomyces lipmanii prokMSA_id:37181 Streptomyces lateritius prokMSA_id:44772 Streptomyces clavuligerus 2.30.1.8.1.6 STM.SALMONIS 1 seq 2.30.1.8.1.6.1757 OTU 1 seq prokMSA_id:11839 Streptomyces salmonis DPDU 00098 2.30.1.8.1.8 STM.ARMENIACUS_SUBGROUP 9 seqs 2.30.1.8.1.8.1195 OTU 1 seq prokMSA_id:11848 str. SR 257 2.30.1.8.1.8.1230 OTU 1 seq prokMSA_id:11852 Streptomyces CN732 str. CN 732 2.30.1.8.1.8.1339 OTU 1 seq prokMSA_id:19464 from anoxic bulk soil clone BSV58 2.30.1.8.1.8.1342 OTU 1 seq prokMSA_id:27478 Streptomyces sp. IM-6840 2.30.1.8.1.8.1377 OTU 1 seq prokMSA_id:30701 Streptomyces cattleya 2.30.1.8.1.8.1436 OTU 1 seq prokMSA_id:11847 Streptomyces malaysiensis str. ATB-11 2.30.1.8.1.8.1908 OTU 1 seq prokMSA_id:23521 Streptomyces sp. F50970 2.30.1.8.1.8.1918 OTU 1 seq prokMSA_id:36636 Streptomyces sp. IM-7248 2.30.1.8.1.8.1939 OTU 1 seq prokMSA_id:46451 Streptomyces sp. KACC 20159 2.30.1.8.1.9 STM.MASHUENSIS_SUBGROUP 15 seqs 2.30.1.8.1.9.1128 OTU 4 seqs prokMSA_id:26087 Streptomyces sp. 11AG8 prokMSA_id:84823 Streptomyces sp. YIM 80305 prokMSA_id:87210 Streptomyces sp. YIM 80250 AY299619 prokMSA_id:87471 Streptomyces sp. YIM 80244 AY299620 2.30.1.8.1.9.1251 OTU 1 seq prokMSA_id:11859 Streptomyces macrosporus DSM 41449 2.30.1.8.1.9.1257 OTU 1 seq prokMSA_id:75252 earthworm cast clone c219 2.30.1.8.1.9.1280 OTU 1 seq prokMSA_id:11860 clone OPT29 2.30.1.8.1.9.1284 OTU 1 seq prokMSA_id:11861 Streptomyces megasporus DSM 41476 2.30.1.8.1.9.1299 OTU 1 seq prokMSA_id:11863 Streptomyces thermolineatus DSM 41451 2.30.1.8.1.9.1384 OTU 1 seq prokMSA_id:75823 Rubrobacteridae clone WYO2C 2.30.1.8.1.9.1536 OTU 1 seq prokMSA_id:19964 thermal soil clone YNPFFP59 2.30.1.8.1.9.1739 OTU 1 seq prokMSA_id:66545 clone cvf70163 2.30.1.8.1.9.1843 OTU 1 seq prokMSA_id:78720 clone JG30-KF-A23 2.30.1.8.1.9.1901 OTU 1 seq prokMSA_id:72508 Earthworm burrow B33D1 2.30.1.8.1.9.2025 OTU 1 seq prokMSA_id:63785 Verrucomicrobia clone LD1-PA32 2.30.1.8.1.10 THERMOPHILIC_STREPTOMYCES 13 seqs 2.30.1.8.1.10.1217 OTU 1 seq prokMSA_id:67031 clone SHA-34 2.30.1.8.1.10.1268 OTU 1 seq prokMSA_id:24961 clone KS49 2.30.1.8.1.10.1344 OTU 1 seq prokMSA_id:11871 Streptomyces sp. str. TB3481 2.30.1.8.1.10.1363 OTU 1 seq prokMSA_id:11875 str. SR 247 2.30.1.8.1.10.1366 OTU 1 seq prokMSA_id:44460 a2b044 2.30.1.8.1.10.1562 OTU 2 seqs prokMSA_id:11881 clone BPC063 prokMSA_id:11882 str. BD2-10 2.30.1.8.1.10.1652 OTU 1 seq prokMSA_id:80057 actinobacterium clone Bol7 2.30.1.8.1.10.1799 OTU 3 seqs prokMSA_id:11869 clone SCALE-12 prokMSA_id:24466 TAYNAYA-19 prokMSA_id:26571 ACE-30 2.30.1.8.1.10.1879 OTU 1 seq prokMSA_id:24170 actinobacterium MERTZ_0CM_206 2.30.1.8.1.10.2041 OTU 1 seq prokMSA_id:38349 actinobacterium MERTZ_21CM_172 2.30.1.8.1.11 STM.ALBIDOFLAVUS_SUBGROUP 15 seqs 2.30.1.8.1.11.1246 OTU 1 seq prokMSA_id:11918 Streptomyces diastaticus subsp. diastaticus DSM 40496 2.30.1.8.1.11.1569 OTU 11 seqs prokMSA_id:11917 Streptomyces sampsonii ATCC 25495 prokMSA_id:20295 Streptomyces sp. VTT E-99-1336 B329 prokMSA_id:24956 Streptomyces sp. VTT E-99-1330 A83 prokMSA_id:26614 Streptomyces somaliensis strain DSM 40267 prokMSA_id:27371 Streptomyces sp. strain ISP 5310 prokMSA_id:33034 Streptomyces sp. KN-0260 prokMSA_id:33840 Streptomyces sp. AP77 prokMSA_id:44263 Streptomyces thermotolerans strain ISP 5227 prokMSA_id:49844 Streptomyces sp. VTT E-99-1329 A52 prokMSA_id:69484 Streptomyces griseus subsp. griseus prokMSA_id:81466 Streptomyces sp. VK-A60 2.30.1.8.1.11.1697 OTU 1 seq prokMSA_id:11920 Streptomyces sp. str. D921 2.30.1.8.1.11.1702 OTU 1 seq prokMSA_id:11924 clone WCHB1-81 2.30.1.8.1.11.2017 OTU 1 seq prokMSA_id:50283 At425_EubF1 2.30.1.8.1.12 STM.COELICOLOR_SUBGROUP 91 seqs 2.30.1.8.1.12.1244 OTU 1 seq prokMSA_id:11961 clone SCALE-8 2.30.1.8.1.12.1340 OTU 59 seqs prokMSA_id:11849 Streptomyces griseocarneus DSM 40004 prokMSA_id:11864 Streptomyces mashuensis DSM 40221 prokMSA_id:11868 Streptomyces thermodiastaticus DSM 40573 prokMSA_id:11870 Streptomyces thermoviolaceus subsp. thermoviolaceus str. ISP prokMSA_id:11872 Streptomyces thermodiastaticus JCM 4840 prokMSA_id:11873 Streptomyces thermoviolaceus subsp. apingens DSM 41392 prokMSA_id:11874 Streptomyces X13 str. X13 prokMSA_id:11876 Streptomyces thermocarboxydovorans DSM 44294 prokMSA_id:11877 Streptomyces thermocarboxydovorans DSM 44295 prokMSA_id:11878 Streptomyces thermocarboxydovorans DSM 44296 prokMSA_id:11879 Streptomyces thermodiastaticus str. NAR 85 prokMSA_id:11880 Streptomyces thermodiastaticus JCM 4840 prokMSA_id:11883 Streptomyces thermovulgaris str. ISP 5444 DSM 40444 prokMSA_id:11884 Streptomyces thermovulgaris str. ISP 5579 DSM 40579 prokMSA_id:11889 Streptomyces thermoalcalitolerans str. TA56 DSM 41741 prokMSA_id:11925 Streptomyces thermocarboxydus str. AT37 DSM 44293 prokMSA_id:11926 Streptomyces thermocarboxydus str. NH50 prokMSA_id:11927 Streptomyces NT 322 str. NT 322 strain prokMSA_id:11930 Streptomyces ASSF15 str. ASSF15 prokMSA_id:11931 Streptomyces ASB37 str. ASB37 prokMSA_id:11932 Streptomyces espinosus NRRL 5729 prokMSA_id:11934 Streptomyces sp. A25 prokMSA_id:11935 Streptomyces coelicolor str. M145; A32 prokMSA_id:11946 Streptomyces coelicolor str. A32 prokMSA_id:11948 Streptomyces glaucescens prokMSA_id:11952 Streptomyces goraiensis str. MTCC 3154 prokMSA_id:11956 str. SR 179c prokMSA_id:11960 Streptomyces caelestis NRRL 2418 prokMSA_id:11962 Streptomyces vellosus NRRL 8037 prokMSA_id:11964 Streptomyces bluensis prokMSA_id:16836 Streptomyces afghaniensis strain ISP 5228 prokMSA_id:16961 Streptomyces thermoviolaceus strain AB106 prokMSA_id:22974 Streptomyces somaliensis strain DSM 40738 prokMSA_id:26260 Streptomyces purpurascens prokMSA_id:26713 Streptomyces roseoflavus prokMSA_id:30298 Streptomyces thermosacchari strain K127 prokMSA_id:30686 Streptomyces thermosacchari strain K122 prokMSA_id:30734 Streptomyces thermosacchari strain K126 prokMSA_id:31629 Streptomyces janthinus strain ISP 5206 prokMSA_id:35830 Streptomyces heteromorphus prokMSA_id:35911 Streptomyces maritimus prokMSA_id:36096 Streptomyces sp. AT10 prokMSA_id:38018 Streptomyces thermocoprophilus strain B19 prokMSA_id:39423 Streptomyces sp. UAH44 strain UAH44 prokMSA_id:44142 Streptomyces sp. CH-M-1035 prokMSA_id:47723 Streptomyces sp. EF-2 prokMSA_id:51020 Streptomyces steffisburgensis prokMSA_id:52246 Streptomyces albus subsp. albus prokMSA_id:59982 Streptomyces speibonae prokMSA_id:63867 Streptomyces albogriseolus strain NRRL B-1305T prokMSA_id:67229 Streptomyces sp. NK1057 prokMSA_id:69481 Streptomyces cattleya prokMSA_id:70639 Streptomyces roseoflavus prokMSA_id:74503 Streptomyces panayensis prokMSA_id:82694 Streptomyces plemorphus prokMSA_id:82727 Streptomyces nanningensis prokMSA_id:83402 Streptomyces maritimus AY247716 prokMSA_id:85226 Streptomyces tendae prokMSA_id:85361 Streptomyces hebeiensis 2.30.1.8.1.12.1639 OTU 24 seqs prokMSA_id:11919 Streptomyces rutgersensis subsp. rutgersensis DSM 40077 prokMSA_id:11921 Streptomyces intermedius DSM 40372 prokMSA_id:11922 Streptomyces nodosus ATCC 14899 prokMSA_id:11923 Streptomyces gougerotii DSM 40324 prokMSA_id:11928 Streptomyces lividans str. TK21 =rrnB prokMSA_id:11933 Streptomyces ambofaciens prokMSA_id:11936 Streptomyces coelicolor prokMSA_id:11940 Streptomyces eurythermus ATCC 14975 prokMSA_id:11941 Streptomyces nodosus ATCC 14899 prokMSA_id:11942 Streptomyces nodosus ATCC 14899 prokMSA_id:11943 Streptomyces nodosus ATCC 14899 prokMSA_id:11949 Streptomyces pseudogriseolus NRRL 3985 prokMSA_id:11951 Streptomyces CHR3 str. CHR3 prokMSA_id:11954 Streptomyces tendae ATCC 19812 prokMSA_id:11955 Streptomyces CHR28 str. CHR28 prokMSA_id:16535 Streptomyces sp. EF-14 prokMSA_id:24646 Streptomyces coelicolor cosmid I51 prokMSA_id:25222 Streptomyces griseus subsp. griseus prokMSA_id:37883 Streptomyces sp. EF-60 prokMSA_id:48414 Streptomyces sp. NRRL 5799 prokMSA_id:49899 Streptomyces sp. SNG9 complete prokMSA_id:54479 Streptomyces sp. EF-51 prokMSA_id:69739 Streptomyces nogalater prokMSA_id:78531 Streptomyces sp. 40003 2.30.1.8.1.12.1795 OTU 1 seq prokMSA_id:11944 Streptomyces sp. NRRL 3890 2.30.1.8.1.12.1846 OTU 1 seq prokMSA_id:11953 Streptomyces brasiliensis str. CCIB 71 DSM 43159 2.30.1.8.1.12.2045 OTU 5 seqs prokMSA_id:62707 actinobacterium clone ML602J-44 prokMSA_id:80446 actinobacterium clone ML615J-23 prokMSA_id:80623 actinobacterium clone ML817J-9 prokMSA_id:80775 actinobacterium clone ML615J-2 prokMSA_id:81134 actinobacterium ML602J-44 2.30.1.8.2 ACTINOMADURA_SUBGROUP 126 seqs 2.30.1.8.2.1 NOCARDIOPSIS_SUBGROUP 56 seqs 2.30.1.8.2.1.1 TBF.FUSCA_SUBGROUP 10 seqs 2.30.1.8.2.1.1.1467 OTU 1 seq prokMSA_id:52732 Thermobifida cellulolytica strain TB100 2.30.1.8.2.1.1.1520 OTU 3 seqs prokMSA_id:11968 Thermobifida fusca str. 190Th ATCC 27730 prokMSA_id:11970 Thermobifida fusca str. 190Th ATCC 27730 prokMSA_id:32820 Thermomonospora fusca strain IFO 14071 2.30.1.8.2.1.1.1631 OTU 1 seq prokMSA_id:49061 MERTZ_2CM_64 2.30.1.8.2.1.1.1693 OTU 3 seqs prokMSA_id:23192 actinobacterium clone 4-42 prokMSA_id:63108 clone MC-C2-120 prokMSA_id:63110 clone MB-B2-107 2.30.1.8.2.1.1.1976 OTU 2 seqs prokMSA_id:11969 clone ACE-43 prokMSA_id:36942 MERTZ_2CM_212 2.30.1.8.2.1.2 NRP.DASSONVILLEI_SUBGROUP 46 seqs 2.30.1.8.2.1.2.1194 OTU 2 seqs prokMSA_id:25615 Brachystreptospora xinjiangensis prokMSA_id:68398 Nocardiopsis sp. YIM90006 2.30.1.8.2.1.2.1385 OTU 11 seqs prokMSA_id:11972 str. YIM90002 prokMSA_id:11974 str. SR 210. X87313 prokMSA_id:44196 Streptomonospora albus prokMSA_id:53459 Nocardiopsis kunsanensis HA-9T prokMSA_id:67689 Nocardiopsis compostus KS9 prokMSA_id:67690 Nocardiopsis compostus KS8 prokMSA_id:68396 Nocardiopsis sp. YIM90014 prokMSA_id:68397 Nocardiopsis sp. YIM90009 AY082065 prokMSA_id:88578 Nocardiopsis sp. 10002 AY297774 prokMSA_id:91978 Nocardiopsis sp. 10063 AY336515 prokMSA_id:94921 Nocardiopsis salina AY373031 2.30.1.8.2.1.2.1458 OTU 4 seqs prokMSA_id:63691 Nocardiopsis sp. 99-08-186A complete prokMSA_id:63697 Nocardiopsis sp. 99-20-007A complete prokMSA_id:63702 Nocardiopsis sp. 99-21-444A complete prokMSA_id:63704 Nocardiopsis sp. 97-38-018A complete 2.30.1.8.2.1.2.1894 OTU 1 seq prokMSA_id:41061 Nocardiopsis halophila strain DSM 44494T 2.30.1.8.2.1.2.1991 OTU 28 seqs prokMSA_id:11971 Nocardiopsis dassonvillei DSM 40465 prokMSA_id:11973 Nocardiopsis dassonvillei DSM 43884 prokMSA_id:11975 Nocardiopsis synnemataformans str. D-1215 JCM 10456 prokMSA_id:11976 Nocardiopsis dassonvillei DSM 43111 prokMSA_id:11977 Nocardiopsis dassonvillei IFO 14626 prokMSA_id:11978 Nocardiopsis lucentensis DSM 44048 prokMSA_id:11979 Nocardiopsis alba DSM 43377 prokMSA_id:11980 Prauseria hordei str. SH261 prokMSA_id:11981 Prauseria hordei str. SH82 prokMSA_id:11982 Nocardiopsis listeri DSM 40297 prokMSA_id:11983 Nocardiopsis prasina DSM 43845 prokMSA_id:23374 Nocardiopsis dassonvillei strain 823 prokMSA_id:23931 Nocardiopsis sp. 123 prokMSA_id:24444 Nocardiopsis halototerans strain DSM 44410 prokMSA_id:26617 Nocardiopsis umidischolae prokMSA_id:30188 Nocardiopsis exhalans AY036000 prokMSA_id:33658 Nocardiopsis sp. 704a prokMSA_id:35537 Nocardiopsis sp. ES10.1 AY028325 prokMSA_id:41607 Nocardiopsis tropica prokMSA_id:44792 Nocardiopsis metallicus strain R2A prokMSA_id:47196 Nocardiopsis dassonvillei strain JPL-3 prokMSA_id:52175 Nocardiopsis alba prokMSA_id:55246 Nocardiopsis tangguensis prokMSA_id:55606 Nocardiopsis viridoflava prokMSA_id:60273 Nocardiopsis sp. clone GCPF48 prokMSA_id:67687 Nocardiopsis alba KS21 prokMSA_id:79107 Nocardiopsis aegyptica strain DSM 44442 prokMSA_id:83383 Nocardiopsis egyptensis 2.30.1.8.2.2 THS.BISPORA_SUBGROUP 6 seqs 2.30.1.8.2.2.1236 OTU 4 seqs prokMSA_id:11985 Thermobispora bispora str. R51 ATCC 19993 =rrnB prokMSA_id:11986 Thermobispora bispora str. R51 ATCC 19993 =rrnD prokMSA_id:11987 Microbispora bispora JCM 3082 prokMSA_id:11988 Thermobispora bispora str. R51 ATCC 19993 2.30.1.8.2.2.2013 OTU 2 seqs prokMSA_id:11989 Thermobispora bispora str. R51 ATCC 19993 = prokMSA_id:11990 Thermobispora bispora str. R51 ATCC 19993 =rrnC 2.30.1.8.2.3 TMMS.CURVATA_SUBGROUP 4 seqs 2.30.1.8.2.3.1151 OTU 3 seqs prokMSA_id:11996 Thermomonospora curvata DSM 43183 prokMSA_id:11998 Thermomonospora curvata JCM 3096 prokMSA_id:11999 Thermomonospora curvata IFO 15933 2.30.1.8.2.3.1448 OTU 1 seq prokMSA_id:11997 clone Ep_T1.21 2.30.1.8.2.4 AMD.HERBIDA_SUBGROUP 29 seqs 2.30.1.8.2.4.1378 OTU 1 seq prokMSA_id:39129 a2b024 2.30.1.8.2.4.1503 OTU 1 seq prokMSA_id:46523 actinobacterium MERTZ_2CM_158 2.30.1.8.2.4.1741 OTU 22 seqs prokMSA_id:11991 Actinomadura echinospora IFO 14042 prokMSA_id:12002 Actinomadura libanotica IFO 14095 prokMSA_id:12004 Actinocorallia herbida str. AL-50780 IFO 15485 prokMSA_id:12012 Sarraceniospora aurea IFO 15120 prokMSA_id:12013 Sarraceniospora aurea IFO 14752. AB006177 prokMSA_id:12029 Actinomadura viridis str. Mt-1 IFO 15238 prokMSA_id:12041 Actinomadura coerulea IFO 14679 . U49002 prokMSA_id:12058 Actinomadura fulvescens str. IFO 14347 . U49005 prokMSA_id:20201 Actinomadura aurantiaca AF134066 prokMSA_id:22030 Actinomadura hibisca prokMSA_id:24572 Actinomadura hibisca strain DSM 44148T prokMSA_id:26732 Actinomadura vinacea AF134070 prokMSA_id:26839 Actinomadura oligospora prokMSA_id:29010 Actinomadura yumaensis prokMSA_id:30118 Actinomadura umbrina prokMSA_id:31446 Actinomadura livida prokMSA_id:38367 Actinomadura echinospora strain DSM 43163T prokMSA_id:38388 Actinomadura viridis strain DSM 43175T AJ420141 prokMSA_id:46173 Spirillospora sp. JCM3123 AF163124 prokMSA_id:74068 Actinomadura glomerata AF134068 prokMSA_id:88697 Actinomadura sp. 40007 AY295796 prokMSA_id:89686 Actinomadura sp. 40008 AY295797 2.30.1.8.2.4.1782 OTU 1 seq prokMSA_id:51620 Actinomadura longicatena 2.30.1.8.2.4.1859 OTU 1 seq prokMSA_id:12003 str. JTB31 2.30.1.8.2.4.1866 OTU 1 seq prokMSA_id:12008 clone Ep_T1.5 2.30.1.8.2.4.1864 OTU 1 seq prokMSA_id:12007 clone Ep_T1.46 2.30.1.8.2.4.1887 OTU 1 seq prokMSA_id:12010 clone Ep_T1.9 2.30.1.8.2.5 AMD.MADURAE_SUBGROUP 31 seqs 2.30.1.8.2.5.1369 OTU 1 seq prokMSA_id:12051 clone Ep_T1.12 2.30.1.8.2.5.1406 OTU 3 seqs prokMSA_id:12046 Actinomadura kijaniata DSM 43764 prokMSA_id:12047 Actinomadura kijaniata IFO 14229 prokMSA_id:40889 Actinomadura namibiensis strain DSM 44197T 2.30.1.8.2.5.1546 OTU 19 seqs prokMSA_id:12014 Actinomadura formosensis str. C-36820 JCM 7474 prokMSA_id:12032 Actinomadura madurae JCM 7436 prokMSA_id:12033 Actinomadura madurae DSM 43067 prokMSA_id:12035 Actinomadura citrea IFO 14678 prokMSA_id:12036 Actinomadura verrucosospora IFO 14100 prokMSA_id:12037 Actinomadura luteofluorescens IFO 13057 prokMSA_id:12038 Streptomycoides glaucoflavus IFO 14668 prokMSA_id:12040 Actinomadura glucoflavus str. As4.1202T prokMSA_id:12043 Actinomadura atramentaria IFO 14695 . U49000 prokMSA_id:12048 Actinomadura madurae IFO 14623 prokMSA_id:16959 Actinomadura cremea subsp. cremea prokMSA_id:18352 Actinomadura fulvescens strain DSM 43923T prokMSA_id:25601 Thermomonospora formosensis strain IFO 14204 prokMSA_id:29049 Pseudonocardiaceae str. PA151 complete prokMSA_id:37666 Actinomadura mexicana prokMSA_id:37892 Actinomadura pelletieri prokMSA_id:39421 Actinomadura formosensis strain DSM 43997T prokMSA_id:45056 Actinomadura citrea strain DSM 43461T prokMSA_id:51435 Actinomadura nitritigenes 2.30.1.8.2.5.1669 OTU 1 seq prokMSA_id:28823 Pseudonocardiaceae str. PA123 complete 2.30.1.8.2.5.1916 OTU 1 seq prokMSA_id:12028 Actinomadura macra IFO 14102 2.30.1.8.2.5.1929 OTU 1 seq prokMSA_id:12030 Actinomadura cremea subsp. rifamycini IFO 14183 2.30.1.8.2.5.1943 OTU 1 seq prokMSA_id:12034 clone Ep_T1.145 2.30.1.8.2.5.1947 OTU 1 seq prokMSA_id:12039 Actinomadura catellatospora str. AS4.1522T 2.30.1.8.2.5.1978 OTU 1 seq prokMSA_id:12044 clone Ep_T1.240 2.30.1.8.2.5.1979 OTU 1 seq prokMSA_id:12045 Parvopolyspora pallida IFO 14788 2.30.1.8.2.5.2043 OTU 1 seq prokMSA_id:51116 Actinomadura latina 2.30.1.8.3 STREPTOSPORANGIUM_SUBGROUP 115 seqs 2.30.1.8.3.1 STS.NONDIASTATICUM_SUBGROUP 4 seqs 2.30.1.8.3.1.1373 OTU 1 seq prokMSA_id:12059 Streptosporangium roseum JCM 3005 2.30.1.8.3.1.1410 OTU 1 seq prokMSA_id:12060 clone Ep_T1.217 2.30.1.8.3.1.1413 OTU 1 seq prokMSA_id:12061 DA016 2.30.1.8.3.1.1416 OTU 1 seq prokMSA_id:12062 Streptosporangium roseum DSM 43021 2.30.1.8.3.3 STS.ROSEUM_SUBGROUP 30 seqs 2.30.1.8.3.3.1158 OTU 28 seqs prokMSA_id:12065 Streptosporangium nondiastaticum DSM 43848 prokMSA_id:12067 Streptosporangium viridialbum DSM 46131. X89954 prokMSA_id:12068 Streptosporangium pseudovulgare DSM 43181 . X89946 prokMSA_id:12069 Streptosporangium pseudovulgare IFO 13991 prokMSA_id:12070 Streptosporangium nondiastaticum IFO 13990 prokMSA_id:12071 Streptosporangium fragile DSM 43847 prokMSA_id:12072 Streptosporangium fragile IFO 14311 prokMSA_id:12073 Streptosporangium sp. DSM 43137 prokMSA_id:12074 str. SR 58 prokMSA_id:12075 Streptosporangium longisporum IFO 13141 prokMSA_id:12076 Streptosporangium album DSM 43023 . X89934 prokMSA_id:12078 Streptosporangium roseum DSM 43871. X89948 prokMSA_id:12079 Streptosporangium vulgare DSM 46133 prokMSA_id:12081 Streptosporangium vulgare subsp. "antibioticum" DSM 44112 prokMSA_id:12082 Streptosporangium roseum subsp. "incarnatum" DSM 44111. X899 prokMSA_id:12084 Streptosporangium "rubrum" DSM 44095. X89950 prokMSA_id:12087 Streptosporangium "brasiliense" DSM 44109 prokMSA_id:12088 Streptosporangium roseum DSM 43021 . X89947 prokMSA_id:12089 Streptosporangium amethystogenes DSM 46128 prokMSA_id:12090 Streptosporangium "koreanum" DSM 44110. X89943 prokMSA_id:12091 Streptosporangium longisporum DSM 43180 prokMSA_id:12092 Streptosporangium vulgare DSM 43802 . X89955 prokMSA_id:12093 Streptosporangium vulgare IFO 13985 prokMSA_id:12095 Streptosporangium 11007 str. 11007 prokMSA_id:12096 Streptosporangium 15110 str. 15110 prokMSA_id:12102 Planomonospora parontospora subsp. parontospora IFO 13880 prokMSA_id:12103 Planomonospora parontospora subsp. antibiotica JCM 3094 prokMSA_id:46051 Planomonospora sphaerica 2.30.1.8.3.3.1189 OTU 1 seq prokMSA_id:12080 Streptosporangium 7113 str. 7113 2.30.1.8.3.3.1564 OTU 1 seq prokMSA_id:12085 clone Ep_T1.10 2.30.1.8.3.4 STS.VIOLACEOCHROMOGENES_SUBGROUP 3 seqs 2.30.1.8.3.4.1664 OTU 3 seqs prokMSA_id:12097 Streptosporangium violaceochromogenes JCM 3281 prokMSA_id:12098 Streptosporangium violaceochromogenes DSM 43872 prokMSA_id:12099 Streptosporangium violaceochromogenes DSM 43849 2.30.1.8.3.5 STS.CARNEUM_SUBGROUP 2 seqs 2.30.1.8.3.5.1535 OTU 1 seq prokMSA_id:12101 Streptosporangium 5866 str. 5866 2.30.1.8.3.5.1534 OTU 1 seq prokMSA_id:12100 Streptosporangium carneum DSM 44125 2.30.1.8.3.6 PMS.PARONTOSPORA_SUBGROUP 1 seq 2.30.1.8.3.6.1150 OTU 1 seq prokMSA_id:17513 Clavisporangium rectum 2.30.1.8.3.7 STS.VIRIDIALBUM_SUBGROUP 6 seqs 2.30.1.8.3.7.1555 OTU 6 seqs prokMSA_id:12105 Streptosporangium viridialbum DSM 43801 . X89953 prokMSA_id:12106 Streptosporangium viridialbum JCM 3027 prokMSA_id:97252 Streptosporangium sp. 322G04 AB124126 prokMSA_id:97688 Streptosporangium sp. 334G09 AB124288 prokMSA_id:98299 Streptosporangium sp. 334D03 AB124252 prokMSA_id:98400 Streptosporangium sp. 322C09 AB124088 2.30.1.8.3.8 PBS.LONGISPORA_SUBGROUP 6 seqs 2.30.1.8.3.8.1277 OTU 2 seqs prokMSA_id:12108 Planobispora longispora IFO 13918 prokMSA_id:73964 Planobispora longispora strain IFO13918 2.30.1.8.3.8.1380 OTU 1 seq prokMSA_id:16975 Streptosporangiaceae str. IM-6876 2.30.1.8.3.8.1595 OTU 2 seqs prokMSA_id:46890 Streptosporangiaceae str. IM-7193 prokMSA_id:50123 Streptosporangiaceae str. IM-7097 2.30.1.8.3.8.1735 OTU 1 seq prokMSA_id:45962 Nonomuraea roseoviolacea 2.30.1.8.3.9 NM.SALMONEA_SUBGROUP 45 seqs 2.30.1.8.3.9.1190 OTU 5 seqs prokMSA_id:12110 Nonomuria spiralis IFO 14097 prokMSA_id:12111 Nonomuria helvata IFO 14681 prokMSA_id:12114 Nonomuria angiospora IFO 13155 prokMSA_id:12118 Nonomuria salmonea IFO 14687 prokMSA_id:12120 Nonomuria polychroma IFO 14345 2.30.1.8.3.9.1224 OTU 35 seqs prokMSA_id:12104 Planomonospora venezuelensis JCM 3167 prokMSA_id:12109 Planobispora rosea JCM 3166. AB028654 prokMSA_id:12112 Nonomuria pusilla IFO 14684 prokMSA_id:12113 Nonomuria pusilla IFO 14684 prokMSA_id:12115 Nonomuria salmonea DSM 43678 . X97892 prokMSA_id:12116 Cathayosporangium alboflavum IFO 16009 prokMSA_id:12121 Nonomuria fastidiosa IFO 14680 prokMSA_id:12122 Nonomuria africana IFO 14745 prokMSA_id:12123 Nonomuria roseola IFO 14685 prokMSA_id:12124 Nonomuria recticatena IFO 14525 prokMSA_id:12125 Sebekia benihana IFO 14309 prokMSA_id:12133 Streptosporangium corrugatum prokMSA_id:12134 Streptosporangium corrugatum IFO 13972 prokMSA_id:12135 Streptosporangium corrugatum DSM 43316 prokMSA_id:12136 Streptosporangium claviforme DSM 44127 prokMSA_id:12137 Herbidospora cretacea str. K-319 IFO 15474 prokMSA_id:12138 Microtetraspora fusca IFO 13915 . U48973 prokMSA_id:12139 Microtetraspora niveoalba IFO 15239 prokMSA_id:12140 Microtetraspora glauca IFO 14761 prokMSA_id:12141 Microtetraspora glauca DSM 43311 . X97891 prokMSA_id:12142 Microtetraspora glauca IFO 14761 prokMSA_id:12143 Planotetraspora mira IFO 15435 prokMSA_id:12144 Microbispora rosea subsp. rosea IFO 14044 prokMSA_id:12146 Microbispora corallina str. DF-32 prokMSA_id:12149 Microbispora rosea subsp. rosea ATCC 27099 prokMSA_id:12150 Microbispora rosea subsp. rosea JCM 3021 . U48988 prokMSA_id:12151 Microbispora mesophila str. T-1 JCM 3151 . AF002266 prokMSA_id:23223 Microtetraspora malaysiensis strain:H47-7 AB062383 prokMSA_id:29802 Nonomuraea africana strain DSM 43748 prokMSA_id:30729 Acrocarpaspora pleiomorpha AB025318 prokMSA_id:31910 Microtetraspora malaysiensis strain:Y25-12 AB062385 prokMSA_id:40820 Nonomuraea recticatena strain DSM 43937T prokMSA_id:49520 Microtetraspora malaysiensis strain:Y1-5-3 AB062384 prokMSA_id:52334 Nonomuraea turkmeniaca AF277201 prokMSA_id:69415 actinomycete strain IFO16010 2.30.1.8.3.9.1587 OTU 2 seqs prokMSA_id:18645 Nonomuraea roseoviolacea strain:IFO 15903T prokMSA_id:19369 Nonomuraea roseoviolacea strain:SF 2303 2.30.1.8.3.9.1955 OTU 1 seq prokMSA_id:12119 Nonomuria ferruginea str. 487-2 IFO 14094 2.30.1.8.3.9.2016 OTU 1 seq prokMSA_id:25422 Nonomuraea roseoviolacea strain:IFO 14098T 2.30.1.8.3.9.2037 OTU 1 seq prokMSA_id:73039 Nonomuraea terranata 2.30.1.8.3.10 TMMS.CHROMOGENA_SUBGROUP 9 seqs 2.30.1.8.3.10.1252 OTU 1 seq prokMSA_id:34539 Krassilnikovia flexuosa 2.30.1.8.3.10.1874 OTU 7 seqs prokMSA_id:12126 Thermomonospora chromogena str. Agre 577 JCM 6244 prokMSA_id:12127 Thermomonospora chromogena ATCC 43196 prokMSA_id:12129 Thermomonospora chromogena ATCC 43196 prokMSA_id:12130 Thermomonospora chromogena ATCC 43196 prokMSA_id:12131 Thermomonospora chromogena ATCC 43196 prokMSA_id:12132 Thermomonospora chromogena ATCC 43196 prokMSA_id:54694 Thermomonospora chromogena strain ATCC43196 rrnF operon 23S 2.30.1.8.3.10.1989 OTU 1 seq prokMSA_id:12128 Thermomonospora chromogena ATCC 43196 2.30.1.8.3.11 STS.CORRUGATUM_SUBGROUP 1 seq 2.30.1.8.3.11.1386 OTU 1 seq prokMSA_id:36455 actinomycete strain:R-31 2.30.1.8.3.13 MBSP.ROSEA_SUBGROUP 8 seqs 2.30.1.8.3.13.1505 OTU 8 seqs prokMSA_id:12145 Microbispora rosea subsp. rosea ATCC 33326 prokMSA_id:12147 Microbispora rosea subsp. rosea ATCC 27098 prokMSA_id:12148 Microbispora rosea subsp. aerata ATCC 15448 prokMSA_id:12152 Microbispora rosea subsp. rosea IFO 14876 prokMSA_id:12153 Microbispora rosea subsp. rosea IFO 14041 prokMSA_id:20526 Streptosporangiaceae str. PA154 complete AF223346 prokMSA_id:30485 Streptosporangiaceae str. PA147 complete prokMSA_id:67226 Microbispora sp. V2 2.30.1.9 ARTHROBACTER_SUBDIVISION 880 seqs 2.30.1.9.1 ARTHROBACTER_AND_RELATIVES 672 seqs 2.30.1.9.1.1 LEUCOBACTER_ASSEMBLAGE 13 seqs 2.30.1.9.1.1.1135 OTU 1 seq prokMSA_id:66699 Rhodoglobus vestali strain LV3 2.30.1.9.1.1.1345 OTU 3 seqs prokMSA_id:12163 Leucobacter komagatae prokMSA_id:12164 unnamed organism prokMSA_id:42597 Leucobacter komagatae 2.30.1.9.1.1.1460 OTU 1 seq prokMSA_id:12158 Corynebacterium "aquaticum" JCM 1368 2.30.1.9.1.1.1489 OTU 1 seq prokMSA_id:12155 Tropheryma whippelii str. patient 1 2.30.1.9.1.1.1550 OTU 1 seq prokMSA_id:12160 clone WCHB1-08 2.30.1.9.1.1.1568 OTU 2 seqs prokMSA_id:45333 Nostocoida limicola II strain Ver1 prokMSA_id:49131 Nostocoida limicola II strain Ver2 2.30.1.9.1.1.1574 OTU 1 seq prokMSA_id:12168 Agrococcus QSSC2-2 str. QSSC2-2 2.30.1.9.1.1.1570 OTU 1 seq prokMSA_id:12165 Leucobacter komagatae 2.30.1.9.1.1.1899 OTU 1 seq prokMSA_id:12167 Agrococcus jenensis DSM 9580 2.30.1.9.1.1.1921 OTU 1 seq prokMSA_id:61927 actinobacterium d8 strain d8 2.30.1.9.1.2 AGROMYCES_SUBGROUP 12 seqs 2.30.1.9.1.2.1361 OTU 1 seq prokMSA_id:30568 Agromyces bannaensis 2.30.1.9.1.2.1411 OTU 1 seq prokMSA_id:38522 Subtercola boreus 2.30.1.9.1.2.1447 OTU 5 seqs prokMSA_id:12179 Agromyces mediolanus DSM 20152 prokMSA_id:12183 Agromyces mediolanus JCM 1376 prokMSA_id:12184 Agromyces mediolanus str. CNF 186; K. Aoki AN-15 JCM 9632 prokMSA_id:12185 Agromyces mediolanus str. CNF 208 JCM 9633 prokMSA_id:12186 Agromyces mediolanus str. CNF 183; K. Aoki AN-9 JCM 9631. D4 2.30.1.9.1.2.1624 OTU 1 seq prokMSA_id:12178 Agromyces cerinus subsp. cerinus JCM 9083 2.30.1.9.1.2.1657 OTU 1 seq prokMSA_id:12180 Agromyces IFO16235 IFO 16235 2.30.1.9.1.2.1658 OTU 1 seq prokMSA_id:12181 Agromyces IFO16238 IFO 16238 2.30.1.9.1.2.1912 OTU 2 seqs prokMSA_id:12175 Agromyces IFO16237 IFO 16236 prokMSA_id:12176 Agromyces IFO16237 IFO 16237 2.30.1.9.1.3 MICROBACTERIUM_SUBGROUP 113 seqs 2.30.1.9.1.3.1 MBM.BARKERI 4 seqs 2.30.1.9.1.3.1.1513 OTU 3 seqs prokMSA_id:27703 Microbacterium gubbeenense strain LMG S-19263 AF263563 prokMSA_id:33272 Microbacterium gubbeenense strain DPC 5284 prokMSA_id:97664 actinobacterium clone NAB30 AY395034 2.30.1.9.1.3.1.2024 OTU 1 seq prokMSA_id:12187 Microbacterium barkeri DSM 20145 2.30.1.9.1.3.2 MBM.ESTERAROMATICUM_SUBGROUP 5 seqs 2.30.1.9.1.3.2.1692 OTU 2 seqs prokMSA_id:68771 Glacial ice G500K-10 prokMSA_id:80180 Arctic sea ice ARK10030 2.30.1.9.1.3.2.1871 OTU 3 seqs prokMSA_id:12189 Microbacterium esteraromaticum ATCC 8091 . NONE prokMSA_id:12190 Microbacterium esteraromaticum DSM 8609 prokMSA_id:65230 Microbacterium sp. YK18 2.30.1.9.1.3.3 MBM.ARABINOGALACTANOLYTICUM_SUBGROUP 3 seqs 2.30.1.9.1.3.3.1583 OTU 1 seq prokMSA_id:77657 Actinobacteridae clone:Rs-F20 2.30.1.9.1.3.3.1946 OTU 1 seq prokMSA_id:85042 Curtobacterium fangii 2.30.1.9.1.3.3.1969 OTU 1 seq prokMSA_id:12193 clone BPC090 2.30.1.9.1.3.4 MBM.KERATANOLYTICUM_SUBGROUP 37 seqs 2.30.1.9.1.3.4.1241 OTU 21 seqs prokMSA_id:12192 Microbacterium arabinogalactanolyticum str. M-2 DSM 8611. Y1 prokMSA_id:12202 Microbacterium keratanolyticum IFO 13309 prokMSA_id:12204 Microbacterium keratanolyticum DSM 8606 prokMSA_id:12209 Microbacterium imperiale. AB007414 prokMSA_id:12210 Microbacterium chocolatum IFO 3758 . AB004725 prokMSA_id:12213 Microbacterium aurum DSM 8600 prokMSA_id:12216 Microbacterium arborescens DSM 20754 . X77443 prokMSA_id:12217 Microbacterium arborescens IFO 3750 . AB007421 prokMSA_id:12221 Microbacterium aurum IFO 15204 . AB007418 prokMSA_id:12226 Microbacterium terregens str. 88 IFO 12961 prokMSA_id:12227 Microbacterium terregens str. 88 DSM 20449. Y17239 prokMSA_id:12228 Microbacterium schleiferi str. S 110 IFO 15075 . AB004723 prokMSA_id:12230 Microbacterium schleiferi str. S 110 DSM 20489 . Y17237 prokMSA_id:21283 Microbacterium sp. VKM Ac-2015 prokMSA_id:33980 Actinobacterium MPD-93 AF403727 prokMSA_id:41920 Microbacterium sp. OS-6 strain OS-6 prokMSA_id:42905 Curtobacterium sp. VKM Ac-2057 prokMSA_id:47252 Microbacterium sp. absalar prokMSA_id:54324 Microbacterium sp. YSS/2001-1 AF417868 prokMSA_id:72245 Microbacterium sp. oral clone AV005b AF385527 prokMSA_id:86965 Microbacterium sp. T2-22 AY278889 2.30.1.9.1.3.4.1667 OTU 10 seqs prokMSA_id:12212 Microbacterium lacticum prokMSA_id:12219 Microbacterium lacticum IFO 14135 prokMSA_id:19310 Microbacterium sp. I33 prokMSA_id:20016 soil clone 1245-2 prokMSA_id:25944 Microbacterium sp. S10 prokMSA_id:26827 clone GL178.9 AY038630 prokMSA_id:27593 Rape rhizosphere tsb033 AJ295433 prokMSA_id:34587 clone GL184.20 AY038632 prokMSA_id:38519 Microbacterium sp. VKM Ac-2050 AB042084 prokMSA_id:72348 Microbacterium sp. 170702P4 AY144450 2.30.1.9.1.3.4.1758 OTU 1 seq prokMSA_id:68742 Glacial ice SB12K-2-1 2.30.1.9.1.3.4.1779 OTU 5 seqs prokMSA_id:23056 Microbacterium sp. VKM Ac-2011 prokMSA_id:26967 Microbacterium sp. VKM Ac-2048 prokMSA_id:50641 Microbacterium sp. VKM Ac-2014 prokMSA_id:52309 Microbacterium sp. VKM Ac-2012 prokMSA_id:54001 Microbacterium sp. VKM Ac-2013 2.30.1.9.1.3.5 MBM.IMPERIALE_SUBGROUP 48 seqs 2.30.1.9.1.3.5.1124 OTU 1 seq prokMSA_id:39537 Microbacterium sp. VKM Ac-2016 2.30.1.9.1.3.5.1186 OTU 2 seqs prokMSA_id:82683 Cryocola antiquus strain VKM 103PF prokMSA_id:82704 Cryocola antiquus strain VKM Ac-2070 2.30.1.9.1.3.5.1264 OTU 1 seq prokMSA_id:21520 Actinobacterium clone BIhi33 2.30.1.9.1.3.5.1451 OTU 2 seqs prokMSA_id:49537 Cryobacterium aff. psychrophilum A1/C-aer/OI prokMSA_id:62238 CS117 2.30.1.9.1.3.5.1507 OTU 1 seq prokMSA_id:44928 Microbacterium sp. Pla-1 2.30.1.9.1.3.5.1548 OTU 1 seq prokMSA_id:12231 str. HTA064 2.30.1.9.1.3.5.1591 OTU 1 seq prokMSA_id:12246 Microbacterium aurum IFO 15204 2.30.1.9.1.3.5.1625 OTU 1 seq prokMSA_id:29862 Microbacterium sp. AB005 2.30.1.9.1.3.5.1705 OTU 2 seqs prokMSA_id:32010 Actinobacterium KE27CII-4 prokMSA_id:80401 actinobacterium clone W1-4F AY192285 2.30.1.9.1.3.5.1804 OTU 36 seqs prokMSA_id:12211 Microbacterium lacticum DSM 20427 prokMSA_id:12215 Microbacterium laevaniformans IFO 14471 prokMSA_id:12220 Microbacterium laevaniformans prokMSA_id:12222 Microbacterium hominis IFO 15708 prokMSA_id:12223 str. rJ6 prokMSA_id:12224 Microbacterium dextranolyticum prokMSA_id:12225 Microbacterium sp. IFO 15709 prokMSA_id:12229 str. 13-2 prokMSA_id:12232 Microbacterium flavescens IFO 15039 prokMSA_id:12233 Microbacterium sp. str. gh942 prokMSA_id:12234 Microbacterium dextranolyticum str. M-73 DSM 8607 prokMSA_id:12235 Microbacterium laevaniformans DSM 20140 prokMSA_id:12244 str. HTA459 prokMSA_id:12247 Microbacterium dextranolyticum str. M-73 IFO 14592 prokMSA_id:12250 Microbacterium ketosireducens IFO 14548 prokMSA_id:12251 Microbacterium terrae IFO 15300 prokMSA_id:12252 Microbacterium flavescens DSM 20643 prokMSA_id:12253 Microbacterium terrae DSM 8610 prokMSA_id:12258 Aureobacterium resistens DMMZ 1710 . Y14699 prokMSA_id:18236 RSB-1 prokMSA_id:19202 Microbacterium nematophilum prokMSA_id:24767 Microbacterium sp. oral strain C24KA prokMSA_id:26169 TCE16 prokMSA_id:29423 Microbacterium sp. MAS133 strain MAS133 prokMSA_id:32634 Microbacterium trichotecenolyticum prokMSA_id:42242 Blackwater bioreactor BW7 prokMSA_id:64365 Microbacterium sp. 44574 prokMSA_id:66592 Microbacterium testaceum strain SE034 prokMSA_id:68740 Glacial ice SB12K-2-3 prokMSA_id:71669 Microbacterium laevaniformans LA complete prokMSA_id:72814 Microbacterium aerolatum prokMSA_id:77157 actinobacterium clone S15A-MN4 prokMSA_id:78414 Phenanthrene-degrading 78 prokMSA_id:83680 Microbacterium kitamiense strain OB-2 prokMSA_id:86183 Microbacterium resistens prokMSA_id:88097 Microbacterium resistens strain AGP4-3 AY277553 2.30.1.9.1.3.6 MBM.THALASSIUM_SUBGROUP 16 seqs 2.30.1.9.1.3.6.1102 OTU 1 seq prokMSA_id:33383 Microbacterium sp. 46 2.30.1.9.1.3.6.1221 OTU 3 seqs prokMSA_id:12255 Microbacterium halophilum str. N 76 IFO 16062 . AB004714 prokMSA_id:12256 Microbacterium IFO16248 IFO 16248 prokMSA_id:12257 Microbacterium IFO16249 IFO 16249 2.30.1.9.1.3.6.1549 OTU 10 seqs prokMSA_id:18263 Curtobacterium sp. VKM Ac-2059 AB042094 prokMSA_id:41086 Curtobacterium sp. VKM Ac-2062 prokMSA_id:41897 Microbacterium sp. VA8728_00 prokMSA_id:93262 Actinobacterium iRIV12 AY358012 prokMSA_id:93359 Actinobacterium iRIV11 AY358011 prokMSA_id:93663 Actinobacterium iRIII11 AY358003 prokMSA_id:93905 Actinobacterium iRV16 AY358019 prokMSA_id:94101 Actinobacterium iEI7 AY364017 prokMSA_id:94153 Actinobacterium iRII14 AY357998 prokMSA_id:94186 Actinobacterium iRII17 AY357999 2.30.1.9.1.3.6.1640 OTU 1 seq prokMSA_id:12254 Microbacterium thalassium IFO 16060 2.30.1.9.1.3.6.1974 OTU 1 seq prokMSA_id:47210 Curtobacterium sp. VKM Ac-2052 2.30.1.9.1.4 CLAVIBACTER_SUBGROUP 84 seqs 2.30.1.9.1.4.1 CLV.MICHIGANENSE_SUBGROUP 29 seqs 2.30.1.9.1.4.1.1278 OTU 23 seqs prokMSA_id:12260 Clavibacter michiganense subsp. michiganense DSM 46364 prokMSA_id:12261 Clavibacter michiganensis subsp. michiganensis str. JCM 1370 prokMSA_id:12263 Clavibacter michiganense subsp. nebraskense DSM 7483 prokMSA_id:12265 Clavibacter michiganense subsp. nebraskense LMG 5627 prokMSA_id:12266 Clavibacter michiganense subsp. insidiosum LMG 3663 prokMSA_id:12268 Clavibacter michiganense subsp. michiganense LMG 7333 prokMSA_id:12269 Clavibacter michiganense subsp. michiganense JCM 3345 prokMSA_id:12270 Clavibacter michiganense subsp. sepedonicum LMG 2889 prokMSA_id:12271 Clavibacter michiganensis subsp. nebraskensis ATCC 27822 prokMSA_id:12272 Clavibacter michiganense. L43096 prokMSA_id:12273 Clavibacter michiganense. U30254 prokMSA_id:12275 Clavibacter michiganense subsp. insidiosum JCM 1369 . D45051 prokMSA_id:19936 Clavibacter michiganensis strain P 250/01 prokMSA_id:37454 Clavibacter michiganensis strain B7 AF406677 prokMSA_id:39549 Clavibacter michiganensis strain P 202/10 prokMSA_id:45123 Curtobacterium sp. VKM Ac-2060 prokMSA_id:66587 Clavibacter michiganensis prokMSA_id:70525 Clavibacter michiganensis complete L43096 prokMSA_id:73009 Glacial ice G50-PD1 prokMSA_id:73967 Clavibacter michiganensis strain dO AF451847 prokMSA_id:91182 Clavibacter sp. pfB14 AY336543 prokMSA_id:91265 Clavibacter sp. pfB26 AY336555 prokMSA_id:91959 Clavibacter sp. pfB28 AY336557 2.30.1.9.1.4.1.1519 OTU 3 seqs prokMSA_id:37764 Frigoribacterium sp. 227 AF157478 prokMSA_id:43521 Frigoribacterium sp. 301 AF157479 prokMSA_id:45654 Frigoribacter sp. 801 2.30.1.9.1.4.1.1522 OTU 1 seq prokMSA_id:16443 FukuN101 2.30.1.9.1.4.1.1772 OTU 1 seq prokMSA_id:83306 Antarctic R-8287 strain R-8287 2.30.1.9.1.4.1.1965 OTU 1 seq prokMSA_id:80750 Arctic sea ice ARK10165 2.30.1.9.1.4.2 RTB.RATHAYI_SUBGROUP 35 seqs 2.30.1.9.1.4.2.1086 OTU 5 seqs prokMSA_id:12281 Detolaasinbacter tsukamotoae str. CM-05 prokMSA_id:12282 Detolaasinbacter shiratae str. CM-01 prokMSA_id:12283 Detolaasinbacter muratae str. CM-10 prokMSA_id:12284 Detolaasinbacter OM-A1 str. OM-A1 prokMSA_id:45224 Mycetocola tolaasinivorans AB074152 2.30.1.9.1.4.2.1098 OTU 1 seq prokMSA_id:34321 Clavibacter kpa40f 2.30.1.9.1.4.2.1106 OTU 1 seq prokMSA_id:67398 Gram-positive LIg-3 isolate LIg-3 2.30.1.9.1.4.2.1197 OTU 5 seqs prokMSA_id:31778 Frigoribacterium sp. 312 prokMSA_id:68759 Glacial ice G200-C11 prokMSA_id:80323 clone ARKCH4-90 prokMSA_id:80677 Arctic sea ice ARK10173 prokMSA_id:80754 clone ARKDMS-27 2.30.1.9.1.4.2.1404 OTU 1 seq prokMSA_id:59851 Actinobacterium MWH-Ta3 2.30.1.9.1.4.2.1437 OTU 9 seqs prokMSA_id:16324 clone BA4 prokMSA_id:17543 clone S45 prokMSA_id:30944 clone RO23 prokMSA_id:35723 clone S56 prokMSA_id:95180 actinobacterium clone SV1-1 AJ575515 prokMSA_id:96596 actinobacterium clone SV1-7 AJ575517 prokMSA_id:97172 actinobacterium clone SV1-11 AJ575520 prokMSA_id:97372 actinobacterium clone SV1-12 AJ575521 prokMSA_id:98221 actinobacterium clone SV1-16 AJ575522 2.30.1.9.1.4.2.1456 OTU 7 seqs prokMSA_id:12278 Rathayibacter tritici DSM 7486 prokMSA_id:12279 Rathayibacter tritici ATCC 11402 prokMSA_id:12287 Rathayibacter rathayi JCM 9307 prokMSA_id:12288 Rathayibacter rathayi DSM 7485 prokMSA_id:21685 Rathayibacter carexis prokMSA_id:77324 Rathayibacter tritici strain SAFR-009 prokMSA_id:85118 rumen clone BS39 2.30.1.9.1.4.2.1527 OTU 1 seq prokMSA_id:35764 FukuN15 2.30.1.9.1.4.2.1655 OTU 1 seq prokMSA_id:50557 Subtercola frigoramans 2.30.1.9.1.4.2.1909 OTU 1 seq prokMSA_id:12280 str. 12-8 2.30.1.9.1.4.2.1936 OTU 2 seqs prokMSA_id:12285 str. QSSC9-20 prokMSA_id:25558 WCHB1-18 2.30.1.9.1.4.2.2044 OTU 1 seq prokMSA_id:46295 Frigoribacterium aff. faeni A-1/C-an/E 2.30.1.9.1.4.3 CUB.CITREUM_SUBGROUP 20 seqs 2.30.1.9.1.4.3.1132 OTU 1 seq prokMSA_id:73379 actinomycete isolate ON4 2.30.1.9.1.4.3.1173 OTU 1 seq prokMSA_id:12290 Brevibacterium "helvolum" DSM 20419 2.30.1.9.1.4.3.1333 OTU 1 seq prokMSA_id:21404 Brevibacterium equis 2.30.1.9.1.4.3.1599 OTU 1 seq prokMSA_id:12293 IFO 15706 2.30.1.9.1.4.3.1714 OTU 2 seqs prokMSA_id:12292 IFO 15616 prokMSA_id:12295 IFO 15702 2.30.1.9.1.4.3.2018 OTU 14 seqs prokMSA_id:12298 Curtobacterium luteum DSM 20542 prokMSA_id:12299 Curtobacterium citreum DSM 20528 prokMSA_id:17229 Curtobacterium albidum prokMSA_id:27533 Curtobacterium sp. VKM Ac-2056 prokMSA_id:30962 Curtobacterium sp. VKM Ac-1811 prokMSA_id:35312 Curtobacterium sp. VKM Ac-1376 prokMSA_id:35440 Curtobacterium herbarum strain DSM 14013T prokMSA_id:51851 Curtobacterium sp. VKM Ac-1387 prokMSA_id:59541 CAGY8 strain CAGY8 prokMSA_id:71860 Curtobacterium sp. IFO 12674T prokMSA_id:74824 Curtobacterium sp. VKM Ac-1809 prokMSA_id:77377 Curtobacterium flaccumfaciens strain SAFR-008 prokMSA_id:83268 Curtobacterium flaccumfaciens pv. beticila prokMSA_id:84851 Curtobacterium flaccumfaciens pv. basellae AY273210 2.30.1.9.1.5 CELLULOMONAS_SUBGROUP 235 seqs 2.30.1.9.1.5.1 CLLM.FLAVIGENA_SUBGROUP 152 seqs 2.30.1.9.1.5.1.1101 OTU 1 seq prokMSA_id:39609 Promicromonospora sp. IM-0635 2.30.1.9.1.5.1.1103 OTU 1 seq prokMSA_id:45648 ARFS-4 2.30.1.9.1.5.1.1130 OTU 1 seq prokMSA_id:73976 Georgenia muralis strain 1A-C 2.30.1.9.1.5.1.1216 OTU 1 seq prokMSA_id:81808 clone KD3-138 2.30.1.9.1.5.1.1240 OTU 7 seqs prokMSA_id:24202 Cellulomonadaceae str. WB16 prokMSA_id:28551 Cellulomonadaceae str. WB15 prokMSA_id:32484 Cellulomonadaceae str. WB9 prokMSA_id:42537 Cellulomonadaceae str. WB6 prokMSA_id:47319 Cellulomonadaceae str. WB12 prokMSA_id:47814 Cellulomonadaceae str. WB10 prokMSA_id:50055 Cellulomonadaceae str. WB14 2.30.1.9.1.5.1.1431 OTU 2 seqs prokMSA_id:25310 Cellulomonadaceae str. K3 prokMSA_id:39459 Cellulomonadaceae str. W6 2.30.1.9.1.5.1.1450 OTU 1 seq prokMSA_id:24489 Cellulomonadaceae str. K12 2.30.1.9.1.5.1.1449 OTU 6 seqs prokMSA_id:25340 Cellulomonadaceae str. Ke prokMSA_id:26813 Cellulomonadaceae str. WB13 prokMSA_id:30724 Cellulomonadaceae str. WB8 prokMSA_id:30843 Cellulomonadaceae str. WB17 prokMSA_id:39890 Cellulomonadaceae str. WB7 prokMSA_id:52372 Cellulomonadaceae str. K10 2.30.1.9.1.5.1.1490 OTU 1 seq prokMSA_id:24497 clone S35 2.30.1.9.1.5.1.1523 OTU 1 seq prokMSA_id:40713 Dermabacter sp. oral strain B46KS 2.30.1.9.1.5.1.1559 OTU 1 seq prokMSA_id:12341 clone BURTON-14 2.30.1.9.1.5.1.1586 OTU 23 seqs prokMSA_id:12300 Cellulomonas cellasea DSM 20118 prokMSA_id:12315 Cellulomonas flavigena NCIMB 8073 prokMSA_id:12316 Cellulomonas flavigena str. GG prokMSA_id:12317 Cellulomonas sp. str. 794 prokMSA_id:12318 Cellulomonas persica str. I prokMSA_id:12320 Cellulomonas uda NCIMB 8200 prokMSA_id:12321 Cellulomonas fimi DSM 20113 prokMSA_id:12323 Cellulomonas flavigena prokMSA_id:12329 Cellulomonas gelida NCIMB 8076 prokMSA_id:12330 Cellulomonas cellasea prokMSA_id:12331 Cellulomonas biazotea DSM 20112 prokMSA_id:12332 Cellulomonas GM13 str. GM13 prokMSA_id:12334 Cellulomonas biazotea prokMSA_id:12338 Cellulomonas gelida prokMSA_id:12342 Cellulomonas uda prokMSA_id:12348 Cellulomonas fimi prokMSA_id:18563 Cellulomonadaceae str. KB8 prokMSA_id:19709 Cellulomonadaceae str. Wa prokMSA_id:29059 Cellulomonadaceae str. K6 prokMSA_id:29389 Cellulomonadaceae str. K8 prokMSA_id:42792 Cellulomonadaceae str. W10 prokMSA_id:47463 Cellulomonas gelida complete prokMSA_id:61987 Cellulomonas sp. d6 strain d6 2.30.1.9.1.5.1.1589 OTU 5 seqs prokMSA_id:12328 Cellulomonas turbata prokMSA_id:12340 Cellulomonas turbata NCIMB 10587 prokMSA_id:24025 Cellulomonas sp. UFZ-B529 prokMSA_id:32173 Oerskovia paurometabola strain DSM 14281 prokMSA_id:54867 Oerskovia jenensis strain DSM 46001 2.30.1.9.1.5.1.1592 OTU 1 seq prokMSA_id:46611 sp. Lake Bogoria isolate 69B4 2.30.1.9.1.5.1.1671 OTU 10 seqs prokMSA_id:12301 Cellulomonas cellulans DSM 43879 prokMSA_id:12303 Cellulomonas cellulans IFO 16148 prokMSA_id:12309 Oerskovia xanthineolytica NCIMB 11025 prokMSA_id:12335 Cellulomonas cellulans prokMSA_id:26533 Cellulomonas sp. MN 60.3 isolate MN 60.3 prokMSA_id:41760 Cellulomonas cellulans prokMSA_id:55343 Cellulosimicrobium cellulans strain AS 4.1333 prokMSA_id:73058 Promicromonospora sp. IFO 16225 prokMSA_id:77900 Cellulosimicrobium cellulans prokMSA_id:84538 Cellulomonas sp. CJ10597 2.30.1.9.1.5.1.1687 OTU 71 seqs prokMSA_id:11984 unnamed organism. X86601 prokMSA_id:12291 IFO 15614 prokMSA_id:12294 IFO 15777 prokMSA_id:12296 unnamed organism prokMSA_id:12304 Cellulomonas IFO16242 IFO 16242 prokMSA_id:12305 Cellulomonas IFO16243 IFO 16243 prokMSA_id:12312 Cellulomonas pachnodae str. VPCX2 prokMSA_id:12322 Cellulomonas fermentans prokMSA_id:12324 Cellulomonas hominis str. DMMZ CE40 CDC group A-3 DSM 9581 prokMSA_id:12326 Cellulomonas sp. str. 1533 prokMSA_id:12327 Cellulomonas sp. str. 1781 prokMSA_id:12333 Actinomyces humiferus NCTC 25174 prokMSA_id:12336 str. SR 272 prokMSA_id:12337 Cellulomonas IFO16239 IFO 16239 prokMSA_id:12339 Promicromonospora enterophila prokMSA_id:12343 Cellulomonas fermentans DSM 3133 prokMSA_id:12345 str. PB90-5 prokMSA_id:12350 unnamed organism. X94155 prokMSA_id:12353 Sanguibacter suarezii str. ST-26. X79452 prokMSA_id:12425 Renibacterium salmoninarum str. K272/88 Icelandic isolate. X prokMSA_id:12478 str. B755. L13145 prokMSA_id:12511 Brevibacterium mcbrellneri str. E2cr ATCC 49030 . X93594 prokMSA_id:12698 Kineosporia succinea str. I-273 JCM 9957 . AB003932 prokMSA_id:12759 Aeromicrobium erythreum NRRL B-3381 . M37200 prokMSA_id:12945 Saccharopolyspora sp. str. A215. X76967 prokMSA_id:17773 Curtobacterium sp. RSppiD3 AF190221 prokMSA_id:18301 Arthrobacter ilicis Y13325 prokMSA_id:22581 Brevibacterium avium strain NCFB 3055 Y17962 prokMSA_id:23409 Corynebacterium bovis prokMSA_id:24741 Oerskovia jenensis strain DSM 46000 prokMSA_id:25480 Nocardiopsis sp. IM-3701 AF131450 prokMSA_id:29639 Cellulomonas sp. complete strain IFO16066 prokMSA_id:32067 Brevibacterium sp. HZM-1 AF229116 prokMSA_id:32395 #0319-7F7 AF234093 prokMSA_id:33100 Arthrobacter sp. 825 bp Y13326 prokMSA_id:33624 clone Hb5K56 AJ251956 prokMSA_id:37863 Nocardiopsis sp. IM-3791 AF131451 prokMSA_id:38546 Agricultural soil isolate SI-13 AJ252580 prokMSA_id:39735 Cellulomonas sp. d20 strain d20 prokMSA_id:46028 P.hordei isolate SH36 Y07679 prokMSA_id:46093 Skdkislt3 AF300983 prokMSA_id:52650 Nocardiopsis sp. IM-1287 AF131449 prokMSA_id:52667 Cellulomonas variformis strain MX5 prokMSA_id:62293 actinobacterium clone SAb12 AY124424 prokMSA_id:62747 Xylanomonas cellulosilytica prokMSA_id:62962 clone LPB61 prokMSA_id:65386 Brevibacterium helvolum AF511520 prokMSA_id:67658 Arcanobacterium hippocoleae strain CCUG 44697 AJ300767 prokMSA_id:68735 Glacial ice SB12K-6-2 prokMSA_id:70481 Georgenia sp. strain 3A-1 prokMSA_id:72333 Cellulomonas sp. complete strain IFO16064T prokMSA_id:78162 Ornithinicoccus sp. TUT1020 prokMSA_id:78516 clone EarCan106 AY189633 prokMSA_id:78601 actinobacterium clone EarCan090 AY189617 prokMSA_id:79056 Georgenia sp. 2216.35.28 prokMSA_id:81250 Kocuria sp. KMM 3905 AY211385 prokMSA_id:81576 Cellulomonas sp. CR1-1 prokMSA_id:81680 clone KD1-70 prokMSA_id:86708 Nocardiopsis sp. YIM 80191 AY299634 prokMSA_id:86772 Marine pd-17 AY282467 prokMSA_id:87030 Nocardiopsis sp. YIM 80181 AY299631 prokMSA_id:87267 Nocardiopsis sp. YIM 80182 AY299632 prokMSA_id:87611 Nocardiopsis sp. YIM 80174 AY299630 prokMSA_id:87973 Nocardiopsis sp. YIM 80251 AY299633 prokMSA_id:90151 Nocardiopsis sp. 60006 AY297780 prokMSA_id:90605 Actinomycete symbiont 5 of Acromyrmex octospinosus AF491901 prokMSA_id:91188 Nocardiopsis sp. 20030 AY336505 prokMSA_id:91470 Nocardiopsis sp. 20028 AY336503 prokMSA_id:95548 A-F-12 AY395282 prokMSA_id:96597 A-S-20 AY395277 prokMSA_id:97040 Glacial ice MS-T10-08 AY378244 2.30.1.9.1.5.1.1711 OTU 5 seqs prokMSA_id:12311 Cellulomonas X7 str. X7 prokMSA_id:12313 Promicromonospora sukumoe IFO 15062 prokMSA_id:12314 Promicromonospora sukumoe IFO 14650 prokMSA_id:22867 Promicromonospora sukumoe strain DSM 44121 prokMSA_id:71309 Promicromonospora sukumoe 2.30.1.9.1.5.1.1719 OTU 1 seq prokMSA_id:37000 clone KS48 2.30.1.9.1.5.1.1725 OTU 1 seq prokMSA_id:43619 Cellulomonadaceae str. WB11 2.30.1.9.1.5.1.1744 OTU 1 seq prokMSA_id:71022 Rarobacter incanus 2.30.1.9.1.5.1.1748 OTU 5 seqs prokMSA_id:12310 Promicromonospora citrea prokMSA_id:26352 Beutenbergia cavernosa prokMSA_id:44206 Salana multivorans strain Se-3111 prokMSA_id:72122 Cellulomonas sp. complete strain 16063T prokMSA_id:72500 Promicromonospora vindobonesis strain V-45T 2.30.1.9.1.5.1.1780 OTU 2 seqs prokMSA_id:12325 Cellulomonas sp. IFO16246 prokMSA_id:12357 Cellulomonas sp. IFO16240 2.30.1.9.1.5.1.1848 OTU 1 seq prokMSA_id:40050 clone KS95 2.30.1.9.1.5.1.1923 OTU 1 seq prokMSA_id:12346 str. VeCb6 2.30.1.9.1.5.1.1952 OTU 1 seq prokMSA_id:12355 Cellulomonas sp. IFO16241 2.30.1.9.1.5.1.2061 OTU 1 seq prokMSA_id:38534 Actinobacterium WB2 2.30.1.9.1.5.3 SGB.INULINUS_SUBGROUP 45 seqs 2.30.1.9.1.5.3.1085 OTU 1 seq prokMSA_id:77691 Actinobacteridae clone:Rs-Q71 2.30.1.9.1.5.3.1243 OTU 1 seq prokMSA_id:77790 Actinobacteridae clone:Rs-M95 2.30.1.9.1.5.3.1334 OTU 31 seqs prokMSA_id:21976 Crater Lake CL500-17 AF316660 prokMSA_id:23427 FukuN30 prokMSA_id:27163 Crater Lake CL0-113 AF316653 prokMSA_id:30090 GKS2-38 AJ290039 prokMSA_id:30520 GKS2-176 AJ290029 prokMSA_id:31769 FukuN44 AJ290004 prokMSA_id:32861 FukuN8 AJ290008 prokMSA_id:35026 Crater Lake CL500-41 AF316662 prokMSA_id:35381 Crater Lake CL0-47 AF316648 prokMSA_id:35564 Crater Lake CL0-48 AF316649 prokMSA_id:40740 Crater Lake CL0-96 AF316651 prokMSA_id:40821 actinomycete AF141426 prokMSA_id:45942 GKS2-103 prokMSA_id:50803 GKS2-189 AJ290031 prokMSA_id:54833 GKS2-79 AJ290041 prokMSA_id:60850 clone SG2-138 AY135928 prokMSA_id:72953 SY2-33 AF107509 prokMSA_id:84180 actinobacterium clone TLM06/TLMdgge30 prokMSA_id:95275 actinobacterium clone SW6 AJ575550 prokMSA_id:95369 actinobacterium clone SW2 AJ575547 prokMSA_id:95931 actinobacterium clone NZ2 AJ575545 prokMSA_id:96076 actinobacterium clone R3 AJ575499 prokMSA_id:96171 actinobacterium clone NO3 AJ575556 prokMSA_id:96268 actinobacterium clone R5 AJ575501 prokMSA_id:96722 actinobacterium clone S12 AJ575513 prokMSA_id:96951 actinobacterium clone N3 AJ575530 prokMSA_id:97083 actinobacterium clone SW1 AJ575546 prokMSA_id:97119 actinobacterium clone S7 AJ575508 prokMSA_id:97386 actinobacterium clone NO1 AJ575555 prokMSA_id:97567 actinobacterium clone N5 AJ575532 prokMSA_id:98434 actinobacterium clone SW7 AJ575551 2.30.1.9.1.5.3.1512 OTU 1 seq prokMSA_id:43920 actinobacterium TIHP368-75 2.30.1.9.1.5.3.1556 OTU 2 seqs prokMSA_id:12360 clone Sva1007 prokMSA_id:16565 gram-positive TIHP368-02 2.30.1.9.1.5.3.1609 OTU 1 seq prokMSA_id:12354 clone ACK-M1 2.30.1.9.1.5.3.1630 OTU 1 seq prokMSA_id:12359 clone Sva0389 2.30.1.9.1.5.3.1945 OTU 1 seq prokMSA_id:44712 Crater Lake CL0-27 2.30.1.9.1.5.3.1996 OTU 3 seqs prokMSA_id:12356 Sanguibacter inulinus str. ST-50 NCFB 3024 prokMSA_id:12361 Sanguibacter keddieii str. ST-74 ATCC 51767 prokMSA_id:38749 clone p-3370-23G2 2.30.1.9.1.5.3.2008 OTU 3 seqs prokMSA_id:59845 clone BUG-57 prokMSA_id:97258 actinobacterium clone N4 AJ575531 prokMSA_id:97841 actinobacterium clone R6 AJ575502 2.30.1.9.1.5.4 TRB.TUMESCENS_SUBGROUP 38 seqs 2.30.1.9.1.5.4.1218 OTU 1 seq prokMSA_id:65431 clone 17 2.30.1.9.1.5.4.1225 OTU 9 seqs prokMSA_id:12371 str. Lp2 prokMSA_id:24977 actinobacterium clone SBRA282 AF387308 prokMSA_id:25117 actinobacterium clone SBRA22 prokMSA_id:32048 actinobacterium clone GCP18 AF387313 prokMSA_id:46307 Tetrasphaera elongata strain:ASP12 prokMSA_id:50153 actinobacterium clone GCP1 AF387312 prokMSA_id:51139 actinobacterium clone SBRB1 AF387311 prokMSA_id:59353 clone HP1B09 prokMSA_id:59354 clone HP1A06 AF502212 2.30.1.9.1.5.4.1270 OTU 1 seq prokMSA_id:24962 clone Ebpr20 2.30.1.9.1.5.4.1301 OTU 1 seq prokMSA_id:30551 Intrasporangium sp. IM-3749 2.30.1.9.1.5.4.1358 OTU 1 seq prokMSA_id:22538 High G+C Gram-positive lpha7 2.30.1.9.1.5.4.1445 OTU 2 seqs prokMSA_id:49745 Ornithinimicrobium humiphilum strain DSM 12362 prokMSA_id:50307 soil clone 672-2 2.30.1.9.1.5.4.1461 OTU 1 seq prokMSA_id:58688 Lochheadia duodecas 2.30.1.9.1.5.4.1481 OTU 1 seq prokMSA_id:61983 Janibacter like sp. V4.BO.43 marine isolate 2.30.1.9.1.5.4.1638 OTU 1 seq prokMSA_id:40964 Tetrasphaera japonica strain T1-X7 2.30.1.9.1.5.4.1665 OTU 1 seq prokMSA_id:12369 Janibacter QSSC8-6 str. QSSC8-6 2.30.1.9.1.5.4.1663 OTU 1 seq prokMSA_id:12364 Terracoccus luteus DSM 44267 2.30.1.9.1.5.4.1674 OTU 11 seqs prokMSA_id:12368 Terrabacter sp. str. DPO 1361. Y08853 prokMSA_id:26312 Janibacter brevis strain DSM 13953T AJ310085 prokMSA_id:36954 Janibacter terrae prokMSA_id:42562 Janibacter brevis strain:10N prokMSA_id:55617 Terrabacter sp. YK1 prokMSA_id:65231 Terrabacter sp. YK21 prokMSA_id:65232 Terrabacter sp. YK16 prokMSA_id:65234 Terrabacter sp. YK13 prokMSA_id:65235 Terrabacter sp. YK11 prokMSA_id:65236 Terrabacter sp. YK10 prokMSA_id:65237 Terrabacter sp. YK8 AB070461 2.30.1.9.1.5.4.1700 OTU 1 seq prokMSA_id:40007 High G+C Gram-positive lpha5 2.30.1.9.1.5.4.1852 OTU 1 seq prokMSA_id:86198 Tonsillophilus suis strain:HT1-19 2.30.1.9.1.5.4.1873 OTU 1 seq prokMSA_id:70294 ARFS-29 2.30.1.9.1.5.4.1935 OTU 1 seq prokMSA_id:76746 earthworm intestine clone wi06 2.30.1.9.1.5.4.1998 OTU 1 seq prokMSA_id:77483 Knoellia sinensis strain SAFR-013 2.30.1.9.1.5.4.2055 OTU 2 seqs prokMSA_id:12372 Terrabacter tumescens prokMSA_id:24661 Terrabacter tumescens AF005023 2.30.1.9.1.6 ARTHROBACTER_SUBGROUP 180 seqs 2.30.1.9.1.6.1 ARB.GLOBIFORMIS_SUBGROUP 46 seqs 2.30.1.9.1.6.1.1133 OTU 1 seq prokMSA_id:28143 Renibacterium salmoninarum complete 2.30.1.9.1.6.1.1154 OTU 1 seq prokMSA_id:12396 clone SJA-43 2.30.1.9.1.6.1.1156 OTU 1 seq prokMSA_id:12397 Arthrobacter QSSC8-13 str. QSSC8-13 2.30.1.9.1.6.1.1157 OTU 1 seq prokMSA_id:12398 Arthrobacter SN16A str. SN16A 2.30.1.9.1.6.1.1266 OTU 6 seqs prokMSA_id:12417 Arthrobacter psychrolactophilus prokMSA_id:12418 Arthrobacter psychrolactophilus str. D10 prokMSA_id:12419 Arthrobacter psychrolactophilus str. D2 prokMSA_id:12421 Arthrobacter psychrolactophilus str. RG1 prokMSA_id:71392 Naphthalene-utilizing IS13 prokMSA_id:72155 Naphthalene-utilizing IS4 2.30.1.9.1.6.1.1263 OTU 4 seqs prokMSA_id:12394 Arthrobacter 'RSX II' str. RSX II prokMSA_id:44320 Arthrobacter sp. R-II-1 prokMSA_id:49703 Arthrobacter sp. H-I-2 prokMSA_id:59471 Arthrobacter russicus 2.30.1.9.1.6.1.1329 OTU 1 seq prokMSA_id:72934 Citrococcus muralis strain 4-0 2.30.1.9.1.6.1.1557 OTU 5 seqs prokMSA_id:12407 Arthrobacter oxydans DSM 20119 prokMSA_id:43708 Arthrobacter sp. CAB1 prokMSA_id:46937 Arthrobacter sp. YH-2001 prokMSA_id:49669 Arthrobacter sp. 'SMCC G993' prokMSA_id:68760 Glacial ice Guliya200-A1 2.30.1.9.1.6.1.1561 OTU 1 seq prokMSA_id:48874 Micrococcus lylae strain d10 2.30.1.9.1.6.1.1579 OTU 1 seq prokMSA_id:49877 Arthrobacter sp. Kaza-36 2.30.1.9.1.6.1.1593 OTU 19 seqs prokMSA_id:12395 Arthrobacter globiformis str. 168 DSM 20124 prokMSA_id:12405 Arthrobacter pascens str. B89 DSM 20545 prokMSA_id:12427 Arthrobacter globiformis str. 168 DSM 20124 prokMSA_id:16350 Arthrobacter sp. 'SMCC G960' prokMSA_id:17243 Arthrobacter sp. 'SMCC G964' prokMSA_id:27187 Arthrobacter sulfonivorans prokMSA_id:28569 Arthrobacter sp. 'SMCC G991' prokMSA_id:31087 soil clone 987-1 prokMSA_id:39179 Arthrobacter sp. 'SMCC ZAT200' prokMSA_id:39874 soil clone 960-2 prokMSA_id:44124 Arthrobacter sp. JCM 1339 prokMSA_id:49314 Arthrobacter sp. 53 prokMSA_id:68761 Glacial ice CanDirty7 prokMSA_id:77488 Arthrobacter chlorophenolicus strain SAFR-044 prokMSA_id:77502 Arthrobacter globiformis strain SAFR-004 prokMSA_id:78280 Arthrobacter globiformis prokMSA_id:78801 Arthrobacter sp. I4 prokMSA_id:78941 Arthrobacter sp. HJ4 prokMSA_id:78996 Arthrobacter sp. M4 2.30.1.9.1.6.1.1610 OTU 1 seq prokMSA_id:12415 Arthrobacter sp. str. AC-51 2.30.1.9.1.6.1.1684 OTU 2 seqs prokMSA_id:78533 Varibaculum cambriensis strain CCUG 44998 prokMSA_id:80455 Varibaculum cambriensis strain CCUG 44998T 2.30.1.9.1.6.1.1686 OTU 1 seq prokMSA_id:85092 Yania halophila strain YIM 70085 2.30.1.9.1.6.1.1966 OTU 1 seq prokMSA_id:59890 actinobacterium clone ccspost2208 2.30.1.9.1.6.2 ARB.AGILIS_SUBGROUP 23 seqs 2.30.1.9.1.6.2.1324 OTU 1 seq prokMSA_id:68776 Glacial ice CanDirty1 2.30.1.9.1.6.2.1494 OTU 17 seqs prokMSA_id:12433 Arthrobacter agilis str. W.O. 219 DSM 20550 prokMSA_id:12436 Arthrobacter S23H2 str. S23H2 prokMSA_id:12437 str. HTA275 prokMSA_id:12439 Arthrobacter agilis str. LV7 prokMSA_id:18132 Arthrobacter sp. 'SMCC ZAT277' prokMSA_id:19576 Arthrobacter sp. 'SMCC ZAT031' prokMSA_id:60440 Arthrobacter sp. Fa21 prokMSA_id:61835 actinobacterium clone CLi20 prokMSA_id:65387 Arthrobacter agilis prokMSA_id:68747 Glacial ice G50-TB7 prokMSA_id:70897 Arthrobacter sp. 19501 prokMSA_id:71476 Arthrobacter sp prokMSA_id:72673 Glacial ice G200-C1 prokMSA_id:72942 Arthrobacter like sp. V4.BS.11 prokMSA_id:74109 Arthrobacter sp. 19503 prokMSA_id:85235 Arthrobacter sp prokMSA_id:85512 Antarctic R-7549 strain R-7549 2.30.1.9.1.6.2.1577 OTU 1 seq prokMSA_id:77874 Actinobacteridae clone:Rs-N91 2.30.1.9.1.6.2.1582 OTU 1 seq prokMSA_id:44226 AT425_EubD11 2.30.1.9.1.6.2.1628 OTU 1 seq prokMSA_id:12434 Arthrobacter sp. str. IC044 2.30.1.9.1.6.2.1685 OTU 1 seq prokMSA_id:72484 Hb7-K5 2.30.1.9.1.6.2.2036 OTU 1 seq prokMSA_id:12447 Arthrobacter CF-43 str. CF-43 2.30.1.9.1.6.3 ARB.SULFUREUS_SUBGROUP 59 seqs 2.30.1.9.1.6.3.1099 OTU 1 seq prokMSA_id:12457 Arthrobacter sp. str. MB90 2.30.1.9.1.6.3.1296 OTU 1 seq prokMSA_id:77943 Actinobacteridae clone:Rs-M66 2.30.1.9.1.6.3.1405 OTU 33 seqs prokMSA_id:12391 str. B0672. U12224 prokMSA_id:12404 str. RS4. U31487 prokMSA_id:12414 Arthrobacter sp. str. AC-48. X86594 prokMSA_id:12426 str. S7. U31484 prokMSA_id:12431 str. B0686. U12225 prokMSA_id:12443 Arthrobacter ureafaciens str. NC DSM 20126 prokMSA_id:12464 Micrococcus DD75 str. DD75 prokMSA_id:12480 Micrococcus lylae str. JL 178 DSM 20315 prokMSA_id:12483 Micrococcus lylae str. W1IMSNU 50712 prokMSA_id:12489 str. B0629. U12223 prokMSA_id:13406 Corynebacterium sp. str. kpu 002. AB012207 prokMSA_id:13408 Corynebacterium matruchotii CIP 81.82 . X82065 prokMSA_id:17392 clone Hb6-K17 AJ400555 prokMSA_id:18913 #0319-6N24 AF234083 prokMSA_id:28179 #0319-7G2 AF234095 prokMSA_id:28787 Human oral AC69 AF201992 prokMSA_id:33476 Arthrobacter sp. 'SMCC ZAT054' AF197050 prokMSA_id:33821 Arthrobacter sp. 'SMCC G979' AF197035 prokMSA_id:42163 Micrococcus sp. 667-16 prokMSA_id:45425 Arthrobacter sp. 'SMCC B0518' U87110 prokMSA_id:47592 #0319-2C8 AF234055 prokMSA_id:49962 Micrococcus psychrophilum mRNA prokMSA_id:51367 Arthrobacter sp. 'SMCC G963' AF197028 prokMSA_id:52598 Arthrobacter sp. 'SMCC G959' AF197024 prokMSA_id:66789 Arthrobacter sp. PB8 AF500313 prokMSA_id:72427 Arthrobacter sp. 'SMCC G965' AF197030 prokMSA_id:78363 Arthrobacter sp. isolate Py22 AJ271410 prokMSA_id:80189 Arctic sea ice ARK9983 AF468444 prokMSA_id:81633 Arthrobacter sp. clone ckl22 AY080984 prokMSA_id:84837 clone B3 AJ557832 prokMSA_id:90394 Arthrobacter sp. clone 80 AJ577111 prokMSA_id:91129 Arthrobacter sp. pfB10 AY336539 prokMSA_id:91914 KA72 AY345444 2.30.1.9.1.6.3.1452 OTU 1 seq prokMSA_id:42157 Methylomicrobium sp. 6G 2.30.1.9.1.6.3.1457 OTU 2 seqs prokMSA_id:61986 Micrococcus sp. V4.MO.20 prokMSA_id:80644 Micrococcus sp. P_wp0222 2.30.1.9.1.6.3.1573 OTU 5 seqs prokMSA_id:12456 Arthrobacter protophormiae str. M-570 DSM 20168 prokMSA_id:12474 Arthrobacter nicotianae str. 94 DSM 20123 prokMSA_id:17863 Brevibacterium liquefaciens strain DSM 20579 prokMSA_id:45136 Arthrobacter nicotianae strain SB42 prokMSA_id:54177 Psychrophilic marine PS32 complete and -23S intergenic space 2.30.1.9.1.6.3.1620 OTU 1 seq prokMSA_id:12479 Arthrobacter creatinolyticus str. GIFU 12498 GIFU 12498 2.30.1.9.1.6.3.1889 OTU 1 seq prokMSA_id:79015 Citricoccus sp. 2216.25.22 2.30.1.9.1.6.3.2019 OTU 14 seqs prokMSA_id:12465 unnamed organism prokMSA_id:12466 Micrococcus luteus str. HN2-11 prokMSA_id:12467 Micrococcus luteus IFO 16250 prokMSA_id:12468 Micrococcus sp. str. 1F-15 prokMSA_id:12469 Micrococcus sp. str. AC-47 prokMSA_id:22419 Micrococcus sp prokMSA_id:29883 Micrococcus sp. MN 8.1d.1c isolate MN 8.1d.1c prokMSA_id:42695 Rape rhizosphere cse077 prokMSA_id:68736 Glacial ice SB19K-1 prokMSA_id:72015 Blackwater bioreactor BW4 prokMSA_id:72261 Micrococcus sp. strain LMG-19421 prokMSA_id:77387 Micrococcus luteus strain SAFR-002 prokMSA_id:78140 Micrococcus luteus strain DSM 20030T prokMSA_id:83602 Antarctic R-9183 strain R-9183 2.30.1.9.1.6.4 NK.HALOBIA_SUBGROUP 5 seqs 2.30.1.9.1.6.4.1673 OTU 2 seqs prokMSA_id:23405 sp. Crater Lake isolate 13C1 prokMSA_id:44941 sp. Lake Elmenteita isolate WE2 2.30.1.9.1.6.4.1691 OTU 1 seq prokMSA_id:12486 str. ML-162 2.30.1.9.1.6.4.1688 OTU 1 seq prokMSA_id:12485 Nesterenkonia halobia str. 28-3 DSM 20541 2.30.1.9.1.6.4.1751 OTU 1 seq prokMSA_id:12490 Arthrobacter atrocyaneus DSM 20127 2.30.1.9.1.6.5 ARB.CRYSTALLOPOIETES_SUBGROUP 2 seqs 2.30.1.9.1.6.5.1753 OTU 1 seq prokMSA_id:12491 Arthrobacter crystallopoietes DSM 20117 2.30.1.9.1.6.5.1756 OTU 1 seq prokMSA_id:12492 unnamed organism 2.30.1.9.1.6.6 STT.MUCILAGINOSUS_SUBGROUP 13 seqs 2.30.1.9.1.6.6.1212 OTU 6 seqs prokMSA_id:12496 Actinomyces sp. str. CCUG 25688 prokMSA_id:33563 Rothia sp. CCUG 25688 AJ131122 prokMSA_id:50851 Arthrobacter sp. B10 prokMSA_id:58299 Rothia sp. ChDC B202 prokMSA_id:58301 Rothia sp. ChDC B201 prokMSA_id:59468 Rothia aerius 2.30.1.9.1.6.6.1724 OTU 2 seqs prokMSA_id:12497 Stomatococcus mucilaginosus DSM 20746 prokMSA_id:12498 Stomatococcus mucilaginosus str. strain DSM 2.30.1.9.1.6.6.2020 OTU 1 seq prokMSA_id:58300 Rothia dentocariosa strain ChDC B200 2.30.1.9.1.6.6.2063 OTU 4 seqs prokMSA_id:12495 Rothia dentocariosa ATCC 17931 prokMSA_id:58293 Rothia dentocariosa strain ChDC OS32 prokMSA_id:58302 Rothia dentocariosa strain ChDC B199 AF543277 prokMSA_id:58305 Rothia dentocariosa strain ChDC B198 AF543276 2.30.1.9.1.6.7 KOCURIA_SUBGROUP 19 seqs 2.30.1.9.1.6.7.1168 OTU 1 seq prokMSA_id:12509 clone Cd10 2.30.1.9.1.6.7.1213 OTU 5 seqs prokMSA_id:12499 Kocuria rosea DSM 20447 prokMSA_id:12502 Kocuria rosea str. KSE ATCC 187 prokMSA_id:35206 Kocuria polaris strain CMS76or prokMSA_id:77664 Arthrobacter sp. TUT1004 prokMSA_id:78055 Arthrobacter sp. TUT1003 2.30.1.9.1.6.7.1442 OTU 3 seqs prokMSA_id:27944 Kocuria kristinae AJ316579 prokMSA_id:43126 Kocuria kristinae AF323746 prokMSA_id:65497 Kocuria kristinae strain HAMBI2407 2.30.1.9.1.6.7.1479 OTU 1 seq prokMSA_id:21109 Rothia-like sp. CCUG 35957 2.30.1.9.1.6.7.1529 OTU 1 seq prokMSA_id:78681 Kocuria sp. 2216.35.31 2.30.1.9.1.6.7.1554 OTU 4 seqs prokMSA_id:12500 Micrococcus SMCC ZAT351 SMCC ZAT351 prokMSA_id:12501 Micrococcus SMCC ZAT352 SMCC ZAT352 prokMSA_id:12504 Kocuria palustris str. TAGA27 strain DSM 11925 prokMSA_id:35999 Gram-positive Wuba45 2.30.1.9.1.6.7.1604 OTU 1 seq prokMSA_id:24670 Kocuria rhizophila strain RNF1 2.30.1.9.1.6.7.1606 OTU 1 seq prokMSA_id:12510 clone Cd45 2.30.1.9.1.6.7.1622 OTU 1 seq prokMSA_id:19877 Kocuria rhizophila strain KL-057 2.30.1.9.1.6.7.1810 OTU 1 seq prokMSA_id:37075 Rothia amarae complete 2.30.1.9.1.6.8 BRB.LINENS_SUBGROUP 13 seqs 2.30.1.9.1.6.8.1140 OTU 1 seq prokMSA_id:36025 Brevibacterium paucivorans strain CF 62 2.30.1.9.1.6.8.1341 OTU 4 seqs prokMSA_id:12512 Brevibacterium otitidis str. Marseille 1998-67770 CIP 105044 prokMSA_id:12513 Oerskovia CIP101491 str. 491 CIP 101 prokMSA_id:12514 Brevibacterium otitidis str. A37/73 NCFB 3053 . X93593 prokMSA_id:12518 Brevibacterium sp. D88212 2.30.1.9.1.6.8.1618 OTU 1 seq prokMSA_id:12515 str. GH443 2.30.1.9.1.6.8.1619 OTU 1 seq prokMSA_id:12516 Brevibacterium linens NCDO 739 2.30.1.9.1.6.8.1745 OTU 6 seqs prokMSA_id:12517 Brevibacterium casei NCDO 2048 prokMSA_id:12519 Brevibacterium epidermidis NCDO 2286 prokMSA_id:12520 Brevibacterium iodinum NCDO 613 prokMSA_id:12521 Brevibacterium linens prokMSA_id:12522 Brevibacterium iodinum prokMSA_id:20188 Brevibacterium casei strain DSM 20657 2.30.1.9.1.7 DERMATOPHILUS_SUBGROUP 34 seqs 2.30.1.9.1.7.1 BCB.FAECIUM_SUBGROUP 18 seqs 2.30.1.9.1.7.1.1446 OTU 1 seq prokMSA_id:78446 Brachybacterium sp. C3H-21 strain C3H-21 2.30.1.9.1.7.1.1504 OTU 7 seqs prokMSA_id:19170 Brachybacterium sacelli isolate LMG 20339 prokMSA_id:29857 Brachybacterium fresconis isolate LMG 20333 prokMSA_id:50941 Brachybacterium fresconis isolate LMG 20336 T prokMSA_id:70437 Brachybacterium sacelli isolate LMG 20342 AJ415383 prokMSA_id:70869 Brachybacterium sacelli isolate LMG 20345 T prokMSA_id:73577 Brachybacterium sacelli isolate LMG 20343 AJ415382 prokMSA_id:74355 Brachybacterium sacelli isolate LMG 20338 2.30.1.9.1.7.1.1677 OTU 5 seqs prokMSA_id:12528 Brachybacterium conglomeratum NCIMB 9859 prokMSA_id:30645 Brachybacterium sp. V589 prokMSA_id:71795 Brachybacterium paraconglomeratum isolate LMG 19861 T prokMSA_id:77571 Brachybacterium conglomeratum strain SAFR-049 prokMSA_id:77876 Brachybacterium paraconglomeratum 2.30.1.9.1.7.1.1736 OTU 1 seq prokMSA_id:31079 Brachybacterium rhamnosum isolate LMG 19848 T 2.30.1.9.1.7.1.2028 OTU 3 seqs prokMSA_id:12524 Microthrix parvicella prokMSA_id:12525 Microthrix parvicella prokMSA_id:12527 Microthrix parvicella 2.30.1.9.1.7.1.2053 OTU 1 seq prokMSA_id:12532 Brachybacterium nesterenkovii DSM 9573 2.30.1.9.1.7.2 DRB.HOMINIS_SUBGROUP 3 seqs 2.30.1.9.1.7.2.1323 OTU 3 seqs prokMSA_id:12533 Dermabacter hominis DSM 7083 prokMSA_id:12534 Dermabacter hominis NCFB 2769 prokMSA_id:25478 Dermabacter hominis 2.30.1.9.1.7.3 DER.CONGOLENSIS_SUBGROUP 13 seqs 2.30.1.9.1.7.3.1108 OTU 1 seq prokMSA_id:52125 Kytococcus sp. Muenster 2000 2.30.1.9.1.7.3.1389 OTU 1 seq prokMSA_id:26586 Dermatophilus chelonae DSM 44178 strain 2.30.1.9.1.7.3.1716 OTU 1 seq prokMSA_id:12537 Dermacoccus nishinomiyaensis DSM 20448 2.30.1.9.1.7.3.1718 OTU 1 seq prokMSA_id:12538 Demetria terragena str. HKI 0089 DSM 11295 2.30.1.9.1.7.3.1747 OTU 4 seqs prokMSA_id:19020 actinobacterium clone SBRA95 AF387310 prokMSA_id:19760 actinobacterium clone SBRA375 prokMSA_id:20014 actinobacterium clone SBRA213 prokMSA_id:25122 actinobacterium clone SBRA20 2.30.1.9.1.7.3.1814 OTU 3 seqs prokMSA_id:12540 Dermatophilus congolensis ATCC 14637 prokMSA_id:12541 Dermatophilus congolensis ATCC 14637 prokMSA_id:18159 Dermatophilus congolensis DSM 44180 strain AJ243918 2.30.1.9.1.7.3.1827 OTU 1 seq prokMSA_id:33876 Dermatophilus crocodyli 2.30.1.9.1.7.3.1990 OTU 1 seq prokMSA_id:62967 clone LPB21 2.30.1.9.1.8 BG.CASEILYTICA 1 seq 2.30.1.9.1.8.1754 OTU 1 seq prokMSA_id:12542 Bogoriella caseilytica HKI 0088 2.30.1.9.2 ACTINOMYCES_AND_RELATIVES 169 seqs 2.30.1.9.2.1 ACTINOMYCES_SUBGROUP 94 seqs 2.30.1.9.2.1.1 ACT.VISCOSUS_SUBGROUP 45 seqs 2.30.1.9.2.1.1.1123 OTU 4 seqs prokMSA_id:22109 human oral A15 prokMSA_id:43104 human oral A16 prokMSA_id:44824 human oral A14 prokMSA_id:92289 Actinomyces sp. oral clone IP073 AY349365 2.30.1.9.2.1.1.1129 OTU 1 seq prokMSA_id:12548 Actinomyces bovis NCTC 11535 2.30.1.9.2.1.1.1178 OTU 1 seq prokMSA_id:12560 Actinomyces gerencseriae DSM 6844 2.30.1.9.2.1.1.1183 OTU 1 seq prokMSA_id:12562 Actinomyces europaeus CCUG 32789A 2.30.1.9.2.1.1.1181 OTU 1 seq prokMSA_id:12561 Actinomyces denticolens NCTC 11490 2.30.1.9.2.1.1.1227 OTU 22 seqs prokMSA_id:12545 Actinomyces viscosus NCTC 10951 prokMSA_id:12553 Actinomyces sp. ATCC 49338 prokMSA_id:19228 Actinomyces naeslundii strain CCUG 34285 AJ234050 prokMSA_id:22197 Actinomyces sp. oral clone EP011 prokMSA_id:23267 Actinomyces sp. strain CCUG 33931 prokMSA_id:27124 Actinomyces viscosus strain CCUG 35332 prokMSA_id:28887 Actinomyces viscosus strain CCUG 33710 AJ234046 prokMSA_id:30901 Actinomyces naeslundii strain CCUG 33914 prokMSA_id:42280 Actinomyces sp. oral clone EP005 prokMSA_id:45176 Actinomyces naeslundii strain CCUG 34286 clone 1 prokMSA_id:46052 Actinomyces sp. oral clone AG004 prokMSA_id:46190 Actinomyces sp. oral clone BL008 AF385553 prokMSA_id:47140 Actinomyces viscosus strain CCUG 34288 prokMSA_id:49418 Actinomyces naeslundii AB062278 prokMSA_id:50539 Actinomyces naeslundii strain CCUG 33519 prokMSA_id:58283 Actinomyces sp. ChDC OS47 prokMSA_id:58292 Actinomyces viscosus prokMSA_id:58304 Actinomyces sp. ChDC B197 prokMSA_id:58541 Actinomyces oricola strain CCUG 46090T prokMSA_id:71223 Actinomyces sp. oral clone AP064 prokMSA_id:74701 Actinomyces naeslundii strain strain CCUG 34286 clone 2 prokMSA_id:92445 Actinomyces sp. oral clone JA063 AY349367 2.30.1.9.2.1.1.1368 OTU 3 seqs prokMSA_id:17127 Actinomyces urogenitalis mRNA prokMSA_id:21028 Actinomyces urogenitalis mRNA prokMSA_id:40580 Actinomyces urogenitalis 2.30.1.9.2.1.1.1394 OTU 1 seq prokMSA_id:24150 Actinomyces bowdenii strain M1956/95/1 2.30.1.9.2.1.1.1508 OTU 1 seq prokMSA_id:51318 human oral A4 2.30.1.9.2.1.1.1514 OTU 1 seq prokMSA_id:27867 human oral A11 2.30.1.9.2.1.1.1629 OTU 1 seq prokMSA_id:26223 Actinomyces radicidentis 2.30.1.9.2.1.1.1649 OTU 2 seqs prokMSA_id:74646 Actinomyces sp. oral clone DR002 AF385517 prokMSA_id:79234 Actinomyces graevenitzii strain CCUG 27294T 2.30.1.9.2.1.1.1703 OTU 3 seqs prokMSA_id:12547 Actinomyces slackii NCTC 11923 prokMSA_id:40753 Actinomyces slackii strain CCUG 32792 clone 1 prokMSA_id:49536 Actinomyces slackii strain CCUG 32792 clone 2 2.30.1.9.2.1.1.1755 OTU 1 seq prokMSA_id:12543 Actinomyces israelii CIP 103259 2.30.1.9.2.1.1.1794 OTU 1 seq prokMSA_id:23149 Actinomyces sp. oral strain B19SC 2.30.1.9.2.1.1.1906 OTU 1 seq prokMSA_id:28461 Actinomyces sp. strain M2231/94/1 2.30.1.9.2.1.2 ACT.NEUII_SUBGROUP 26 seqs 2.30.1.9.2.1.2.1193 OTU 3 seqs prokMSA_id:44425 Actinomyces sp. CCUG 34479 mRNA prokMSA_id:47127 Actinomyces sp. CCUG 41706 mRNA prokMSA_id:50842 Actinomyces sp. strain M1429/94/1 2.30.1.9.2.1.2.1231 OTU 1 seq prokMSA_id:12571 Actinomyces meyeri CIP 103148 2.30.1.9.2.1.2.1636 OTU 4 seqs prokMSA_id:12569 Actinomyces hyovaginalis NCFB 2983 prokMSA_id:22416 Actinomyces hyovaginalis-like strain P31/96/2 AJ234064 prokMSA_id:47631 Actinomyces hyovaginalis strain UZCOR144 prokMSA_id:94199 Actinomyces hyovaginalis strain E6 AF489585 2.30.1.9.2.1.2.1672 OTU 13 seqs prokMSA_id:12572 clone HstpL15. AF159688 prokMSA_id:12574 Actinomyces sp. str. APL11 prokMSA_id:18829 Actinomyces sp. strain CCUG 37290 prokMSA_id:23262 Actinomyces odontolyticus strain CCUG 33767 prokMSA_id:25517 Actinomyces odontolyticus strain CCUG 34689 prokMSA_id:28910 Actinomyces odontolyticus strain CCUG 32834 prokMSA_id:41300 Actinomyces sp. oral strain C29KA AF287751 prokMSA_id:45427 Actinomyces odontolyticus strain CCUG 28084 prokMSA_id:52899 Actinomyces odontolyticus strain CCUG 20536T prokMSA_id:70945 Actinomyces sp. oral clone CT047 prokMSA_id:71551 Actinomyces sp. oral clone CT068 prokMSA_id:74130 Actinomyces sp. oral strain Hal-1083 prokMSA_id:87494 Actinomyces genomosp. C2 AY278611 2.30.1.9.2.1.2.1798 OTU 2 seqs prokMSA_id:12566 unnamed organism prokMSA_id:12567 Actinomyces turicensis str. APL10 DSM 9168 2.30.1.9.2.1.2.1883 OTU 2 seqs prokMSA_id:23235 Actinomyces sp. VA20732_01 prokMSA_id:72536 Actinomyces funkeii strain CCUG 42773 2.30.1.9.2.1.2.2039 OTU 1 seq prokMSA_id:60136 Actinomyces sp. CCUG 44997 2.30.1.9.2.1.4 ACT.HORDEOVULNERIS 1 seq 2.30.1.9.2.1.4.1713 OTU 1 seq prokMSA_id:12589 Actinomyces hordeovulneris CIP 103149 2.30.1.9.2.1.5 ABC.PYOGENES_SUBGROUP 17 seqs 2.30.1.9.2.1.5.1331 OTU 1 seq prokMSA_id:33696 Arcanobacterium sp. strain M430/94/2 2.30.1.9.2.1.5.1429 OTU 2 seqs prokMSA_id:81251 Actinobaculum schaalii strain LL AF487680 prokMSA_id:81857 Actinobaculum schaalii strain PA 2.30.1.9.2.1.5.1603 OTU 4 seqs prokMSA_id:12595 Arcanobacterium bernardiae str. LCDC 89-0504 DSM 9152 prokMSA_id:12597 Arcanobacterium pyogenes NCTC 5224 prokMSA_id:29935 Arcanobacterium sp. HJ57-14E strain HJ57-14E prokMSA_id:47347 Arcanobacterium sp. HJ55-94AV329.2 strain HJ55-94AV329.2 2.30.1.9.2.1.5.1614 OTU 2 seqs prokMSA_id:12593 Actinobaculum schaalii CCUG 27420 prokMSA_id:12594 Actinobaculum schaalii CCUG 27420 2.30.1.9.2.1.5.1752 OTU 1 seq prokMSA_id:12590 Arcanobacterium phocae str. M2546/94/1 DSM 10004 2.30.1.9.2.1.5.1764 OTU 1 seq prokMSA_id:12591 Arcanobacterium haemolyticum str. 53/W/1 NCTC 9697 2.30.1.9.2.1.5.1768 OTU 1 seq prokMSA_id:12592 Actinobaculum suis DSM 20639 2.30.1.9.2.1.5.1801 OTU 1 seq prokMSA_id:71888 Actinobaculum massiliae strain CIP 107404 2.30.1.9.2.1.5.1829 OTU 1 seq prokMSA_id:19270 Actinomyces hongkongensis 2.30.1.9.2.1.5.2049 OTU 3 seqs prokMSA_id:16861 Arcanobacterium sp. CCUG 41704# prokMSA_id:24783 Arcanobacterium haemolyticum strain CIP 103370 prokMSA_id:25077 Arcanobacterium sp. CCUG 41705# 2.30.1.9.2.1.6 JNS.DENITRIFICANS_SUBGROUP 5 seqs 2.30.1.9.2.1.6.1773 OTU 1 seq prokMSA_id:12598 clone pCON4 2.30.1.9.2.1.6.2000 OTU 4 seqs prokMSA_id:12599 Jonesia denitrificans prokMSA_id:12600 Jonesia denitrificans NCTC 10816 prokMSA_id:77730 Jonesia sp. TUT1016 prokMSA_id:78074 Jonesia sp. TUT1015 2.30.1.9.2.2 BIFIDOBACTERIUM_SUBGROUP 75 seqs 2.30.1.9.2.2.1 BIF.MINIMUM_SUBGROUP 6 seqs 2.30.1.9.2.2.1.1253 OTU 1 seq prokMSA_id:24773 Bifidobacterium sp. group II-3 2.30.1.9.2.2.1.1434 OTU 1 seq prokMSA_id:19706 Gardnerella vaginalis 2.30.1.9.2.2.1.1580 OTU 1 seq prokMSA_id:43993 Bifidobacterium merycicum 2.30.1.9.2.2.1.1704 OTU 1 seq prokMSA_id:12604 Bifidobacterium indicum JCM 1302 2.30.1.9.2.2.1.1710 OTU 1 seq prokMSA_id:12606 Bifidobacterium angulatum str. strain ATCC 27535 2.30.1.9.2.2.1.1977 OTU 1 seq prokMSA_id:34238 clone p-3348-23G2 2.30.1.9.2.2.2 BIF.CATENULATUM_SUBGROUP 14 seqs 2.30.1.9.2.2.2.1170 OTU 1 seq prokMSA_id:49417 Bifidobacterium pseudocatenulatum 2.30.1.9.2.2.2.1351 OTU 1 seq prokMSA_id:78797 Bifidobacterium psychroaerophilum 2.30.1.9.2.2.2.1967 OTU 6 seqs prokMSA_id:12610 Bifidobacterium pseudocatenulatum str. strain JCM 1200 prokMSA_id:12613 Bifidobacterium dentium ATCC 27534 prokMSA_id:21503 Bifidobacterium catenulatum prokMSA_id:29658 Bifidobacterium sp. oral strain A32ED prokMSA_id:45910 Bifidobacterium sp. 9B prokMSA_id:70122 human infant N55G 2.30.1.9.2.2.2.2040 OTU 6 seqs prokMSA_id:12615 Bifidobacterium ruminantium JCM 8222 prokMSA_id:16594 Bifidobacterium adolescentis clone nru-1 prokMSA_id:22676 Bifidobacterium sp. 15B prokMSA_id:30243 Bifidobacterium adolescentis clone nru-5 prokMSA_id:37674 Bifidobacterium sp. 7B AF275890 prokMSA_id:39484 Bifidobacterium sp. 15A 2.30.1.9.2.2.3 BIF.BIFIDUM_SUBGROUP 21 seqs 2.30.1.9.2.2.3.1109 OTU 6 seqs prokMSA_id:12625 Bifidobacterium boum JCM 1211 prokMSA_id:17245 Bifidobacterium sp. group I-3 prokMSA_id:25225 rumen 3C3d-20 prokMSA_id:35146 mpn-isolate group 10 prokMSA_id:42077 rumen 4C3d-16 prokMSA_id:55846 Bifidobacterium thermacidophilum subsp. suis complete 2.30.1.9.2.2.3.1276 OTU 1 seq prokMSA_id:12618 Bifidobacterium thermophilum 2.30.1.9.2.2.3.1290 OTU 1 seq prokMSA_id:12619 Bifidobacterium inopinatum str. strain DSM 10107 2.30.1.9.2.2.3.1319 OTU 1 seq prokMSA_id:12620 Bifidobacterium denticolens str. strain DSM 10105 2.30.1.9.2.2.3.1320 OTU 1 seq prokMSA_id:12621 Bifidobacterium inopinatum str. strain DSM 10107 2.30.1.9.2.2.3.1335 OTU 3 seqs prokMSA_id:12617 Bifidobacterium bifidum KCTC 3202 prokMSA_id:12624 Bifidobacterium bifidum KCTC 3202 prokMSA_id:12627 Bifidobacterium bifidum DSM 20456 2.30.1.9.2.2.3.1352 OTU 2 seqs prokMSA_id:17910 Bifidobacterium sp. 65947 prokMSA_id:63018 Bifidobacterium scardovii strain CCUG 13008 2.30.1.9.2.2.3.1597 OTU 2 seqs prokMSA_id:12622 Bifidobacterium subtile DSM 20096 prokMSA_id:12623 Bifidobacterium subtile JCM 7109 2.30.1.9.2.2.3.1915 OTU 3 seqs prokMSA_id:63869 Bifidobacterium urinalis strain CCUG 34444 AJ278695 prokMSA_id:63870 Bifidobacterium urinalis strain CCUG 26938 prokMSA_id:72858 Bifidobacterium sp. oral strain H6-M4 2.30.1.9.2.2.3.1987 OTU 1 seq prokMSA_id:70349 Bifidobacterium sp. oral clone CX010 2.30.1.9.2.2.4 BIF.LACTIS_SUBGROUP 22 seqs 2.30.1.9.2.2.4.1214 OTU 11 seqs prokMSA_id:12636 Bifidobacterium pseudolongum subsp. globosum JCM 5820 prokMSA_id:12637 Bifidobacterium pseudolongum subsp. pseudolongum JCM 1205 prokMSA_id:69112 Bifidobacterium pseudolongum subsp. globosum strain 1-23-3 A prokMSA_id:69376 Bifidobacterium pseudolongum subsp. globosum strain 09-25-2 prokMSA_id:69472 Bifidobacterium pseudolongum subsp. globosum strain 1-25-3 A prokMSA_id:69681 Bifidobacterium pseudolongum subsp. globosum strain 7#-10-11 prokMSA_id:69743 Bifidobacterium pseudolongum subsp. globosum strain 02-2 AY1 prokMSA_id:70773 Bifidobacterium pseudolongum subsp. globosum strain Fb9 AY16 prokMSA_id:72459 Bifidobacterium pseudolongum subsp. globosum strain MU8 AY16 prokMSA_id:78584 Bifidobacterium pseudolongum subsp. pseudolongum prokMSA_id:78906 Bifidobacterium pseudolongum subsp. globosum 2.30.1.9.2.2.4.1465 OTU 9 seqs prokMSA_id:12629 Bifidobacterium lactis str. UR1 prokMSA_id:12630 Bifidobacterium sp prokMSA_id:12631 Bifidobacterium animalis JCM 1190 prokMSA_id:42998 Bifidobacterium animalis prokMSA_id:44833 Bifidobacterium animalis strain:YIT 4090 AB050138 prokMSA_id:48030 Bifidobacterium lactis strain:YIT 4121 AB050136 prokMSA_id:51788 Bifidobacterium infantis strain Y1 prokMSA_id:52295 Bifidobacterium animalis strain:YIT 4119 prokMSA_id:71420 B.lactis and 23S 2.30.1.9.2.2.4.1793 OTU 1 seq prokMSA_id:12632 Bifidobacterium choerinum ATCC 27686 2.30.1.9.2.2.4.1825 OTU 1 seq prokMSA_id:12640 Bifidobacterium magnum JCM 8219 2.30.1.9.2.2.5 BIF.INFANTIS_SUBGROUP 12 seqs 2.30.1.9.2.2.5.1444 OTU 3 seqs prokMSA_id:78555 Bifidobacterium aerophilum prokMSA_id:78586 Bifidobacterium aerophilum prokMSA_id:87249 Bifidobacteriaceae genomosp. C1 AY278612 2.30.1.9.2.2.5.1835 OTU 2 seqs prokMSA_id:32427 Butyrate-producing T1-817 prokMSA_id:72820 human infant S6C 2.30.1.9.2.2.5.1875 OTU 7 seqs prokMSA_id:12645 Bifidobacterium infantis ATCC 15697 prokMSA_id:55278 Bifidobacterium longum strain KB 6 prokMSA_id:56345 Bifidobacterium breve strain JCM 1273 prokMSA_id:57338 Bifidobacterium infantis strain KB 10 prokMSA_id:68376 Bifidobacterium breve strain JCM 7019 prokMSA_id:68379 Bifidobacterium breve strain JCM 7020 prokMSA_id:71297 Bifidobacterium sp. group III-3 2.30.1.9.3 KINEOSPORIA_GROUP 37 seqs 2.30.1.9.3.1087 OTU 2 seqs prokMSA_id:12691 Kineosporia rhamnosa str. I-113 JCM 9953 prokMSA_id:12700 Kineosporia aurantiaca JCM 3230 2.30.1.9.3.1297 OTU 1 seq prokMSA_id:12689 Kineosporia rhamnosa str. I-132 JCM 9954 2.30.1.9.3.1359 OTU 1 seq prokMSA_id:12687 unnamed organism 2.30.1.9.3.1396 OTU 1 seq prokMSA_id:12690 str. G10 dolomite marbel Namibia 2.30.1.9.3.1422 OTU 1 seq prokMSA_id:12696 Kineosporia rhizophila str. I-449 JCM 9960 2.30.1.9.3.1424 OTU 1 seq prokMSA_id:12697 str. SR 139 2.30.1.9.3.1598 OTU 1 seq prokMSA_id:86480 actinobacterium clone FBP402 2.30.1.9.3.1862 OTU 5 seqs prokMSA_id:12692 str. AS2988 prokMSA_id:12693 str. AS2987 prokMSA_id:12694 str. AS2978 prokMSA_id:12695 str. AS3187 prokMSA_id:25938 Kineococcus-like AS3138 complete 2.30.1.9.3.1893 OTU 4 seqs prokMSA_id:12686 Kineosporia aurantiaca ATCC 29727 prokMSA_id:12688 Kineosporia aurantiaca IFO 14067 prokMSA_id:12699 str. SR 11 prokMSA_id:24568 Kineosporia aurantiaca 2.30.1.9.3.1896 OTU 1 seq prokMSA_id:12663 Kineococcus aurantiacus IFO 15268 2.30.1.9.3.1897 OTU 1 seq prokMSA_id:12665 Kineococcus aurantiacus IFO 15268 2.30.1.9.3.1961 OTU 18 seqs prokMSA_id:12664 Kineococcus aurantiacus IFO 15268 prokMSA_id:12666 str. AS2989 prokMSA_id:12667 str. AS2960 prokMSA_id:12668 str. AS2964 prokMSA_id:12669 str. AS2965 prokMSA_id:12670 str. AS2985 prokMSA_id:12671 str. AS2953 prokMSA_id:12672 str. AS3041 prokMSA_id:12673 str. AS3042 prokMSA_id:12675 str. AS3080 prokMSA_id:12676 str. AS3088 prokMSA_id:12677 str. AS3090 prokMSA_id:12679 str. AS3148 prokMSA_id:12680 str. AS3380 prokMSA_id:12682 str. AS3382 prokMSA_id:12683 str. AS3630 prokMSA_id:12684 str. AS3635 prokMSA_id:33896 Kineococcus-like str. AS3642 2.30.1.9.4 THERMOCRISPUM_GROUP 2 seqs 2.30.1.9.4.1271 OTU 1 seq prokMSA_id:12701 Thermocrispum municipale str. MKD 35 DSM 44069 2.30.1.9.4.1563 OTU 1 seq prokMSA_id:46191 Actinomyces sp. CCUG 41708 2.30.1.10 PROPIONIBACTERIUM_GROUP 120 seqs 2.30.1.10.1 PRP.ACNES_SUBGROUP 37 seqs 2.30.1.10.1.2002 OTU 37 seqs prokMSA_id:12709 Propionibacterium acnes str. 63597. AF145256 prokMSA_id:12710 Propionibacterium acnes str. 76995 prokMSA_id:12711 Propionibacterium acnes str. MZ 169082. AF154832 prokMSA_id:12712 Propionibacterium acnes str. LIP4. Y12288 prokMSA_id:12713 clone BPC009. AF154099 prokMSA_id:12714 Propionibacterium acnes. AF076032 prokMSA_id:16987 Propionibacterium acnes isolate:#7168 AB042289 prokMSA_id:17399 Propionibacterium acnes isolate:#1447 AB041617 prokMSA_id:18812 Propionibacterium acnes isolate:#8261 AB042291 prokMSA_id:20375 sheep mite Llangefni 35 AF290481 prokMSA_id:23665 Propionibacterium acnes isolate:0432 AB042286 prokMSA_id:25486 Red Sea KT-2K12 AJ309523 prokMSA_id:26332 Propionibacterium acnes isolate:#4584 AB042287 prokMSA_id:26462 Propionibacterium acnes isolate:#3004 and #7256 AB041618 prokMSA_id:29154 Propionibacterium acnes isolate:#7375 AB042290 prokMSA_id:32473 Propionibacterium acnes ATCC6919 AB042288 prokMSA_id:34150 species isolate Boom-3m-08 Z73442 prokMSA_id:37223 sheep mite Llangefni 57 AF290482 prokMSA_id:37428 Propionibacteriaceae str. K4 prokMSA_id:43212 Red Sea KT-2K38 AJ309527 prokMSA_id:62481 Propionibacterineae clone PH-B24N AF513962 prokMSA_id:66602 Propionibacterium sp. WJ6 AY096033 prokMSA_id:70065 a2b011 AF419680 prokMSA_id:75115 earthworm intestine clone lw29 AY154545 prokMSA_id:75387 Propionibacterium acnes complete AB097215 prokMSA_id:78295 actinobacterium clone:APe2_6 AB074624 prokMSA_id:82570 Propionibacterium acnes isolate: #5317 AB108480 prokMSA_id:83144 Propionibacterium acnes isolate: #2929 AB108484 prokMSA_id:83740 Propionibacterium acnes isolate: #1003 AB108483 prokMSA_id:85076 Propionibacterium acnes isolate: #6119 AB108479 prokMSA_id:85285 Propionibacterium acnes isolate: #5255 AB108482 prokMSA_id:85289 Propionibacterium acnes isolate: #8800 AB108481 prokMSA_id:86231 Propionibacterium acnes isolate: #8644 AB108477 prokMSA_id:88922 clone O-F-20 AF443577 prokMSA_id:89757 clone O-F-15 AF443576 prokMSA_id:92471 Propionibacterium sp. LG AY354921 prokMSA_id:93056 Propionibacterium acnes B15 AY343975 2.30.1.10.2 PRP.THOENII_SUBGROUP 3 seqs 2.30.1.10.2.1291 OTU 1 seq prokMSA_id:49248 Propionibacterium microaerophilus 2.30.1.10.2.1371 OTU 2 seqs prokMSA_id:12724 Propionibacterium granulosum DSM 20700 prokMSA_id:33816 AT425_EubA8 2.30.1.10.3 PRP.FREUDENREICHII_SUBGROUP 5 seqs 2.30.1.10.3.1152 OTU 1 seq prokMSA_id:73295 Propionibacterium sp. oral strain FMA5 2.30.1.10.3.1715 OTU 2 seqs prokMSA_id:12727 Propionibacterium freudenreichii subsp. shermanii str. E11.1 prokMSA_id:12729 Propionibacterium freudenreichii subsp. globosum str. JS53 2.30.1.10.3.1808 OTU 1 seq prokMSA_id:12728 Propionibacterium cyclohexanicum 2.30.1.10.3.1981 OTU 1 seq prokMSA_id:23815 Propionibacterium sp. LCDC-98A072 2.30.1.10.5 TSC.BENDIGOENSIS 4 seqs 2.30.1.10.5.1850 OTU 1 seq prokMSA_id:12733 Tessaracoccus bendigoensis str. Ben106 ACM 5119 2.30.1.10.5.2023 OTU 3 seqs prokMSA_id:17374 Propionibacterium propionicus prokMSA_id:18155 Propionibacterium propionicus strain DSM 43307T prokMSA_id:19216 Propionibacterium sp. oral clone BN085 2.30.1.10.6 PRP.LYMPHOPHILUM_SUBGROUP 1 seq 2.30.1.10.6.1865 OTU 1 seq prokMSA_id:12734 Propionibacterium lymphophilum DSM 4903 2.30.1.10.7 LUT.JAPONICUS_SUBGROUP 1 seq 2.30.1.10.7.1877 OTU 1 seq prokMSA_id:12738 Luteococcus japonicus IFO 12422 2.30.1.10.9 MCL.PHOSPHOVORUS_SUBGROUP 12 seqs 2.30.1.10.9.1306 OTU 1 seq prokMSA_id:12751 str. Lg2 2.30.1.10.9.1307 OTU 1 seq prokMSA_id:12752 str. clone koll13 2.30.1.10.9.1315 OTU 2 seqs prokMSA_id:12743 Friedmanniella capsulatus str. Ben 108; J47 ACM 5120 prokMSA_id:47043 Friedmanniella sp. EL-17a 2.30.1.10.9.1623 OTU 1 seq prokMSA_id:31964 Actinobacterium K2 2.30.1.10.9.1777 OTU 2 seqs prokMSA_id:12741 Friedmanniella antarctica str. AA-1042 DSM 11053 prokMSA_id:12742 Friedmanniella spumicola str. Ben 107 ACM 5121 2.30.1.10.9.1842 OTU 4 seqs prokMSA_id:12753 str. VeSm15 prokMSA_id:22433 Marine R2A170 U78941 prokMSA_id:72755 Microbacterium sp. clone LTUGr00156 AY149469 prokMSA_id:82323 actinobacterium clone VC20 2.30.1.10.9.1933 OTU 1 seq prokMSA_id:48003 sp. sbr-gs28 2.30.1.10.10 ARMB.FASTIDIOSUM_SUBGROUP 7 seqs 2.30.1.10.10.1208 OTU 5 seqs prokMSA_id:12756 Aeromicrobium fastidiosum DSM 10552 prokMSA_id:12757 Nocardioides sp. NCFB 3007 prokMSA_id:12758 Nocardioides sp. NCFB 3005 prokMSA_id:12760 Aeromicrobium erythreum NRRL B-3381 prokMSA_id:39886 Aeromicrobium fastidiosum 2.30.1.10.10.1602 OTU 1 seq prokMSA_id:26274 clone 404-2 2.30.1.10.10.1854 OTU 1 seq prokMSA_id:84596 Aeromicrobium marinum 2.30.1.10.11 NCR.ALBUS_SUBGROUP 39 seqs 2.30.1.10.11.1185 OTU 1 seq prokMSA_id:68678 1152 bp 2.30.1.10.11.1254 OTU 1 seq prokMSA_id:34725 Nocardioides sp. LMG 20237 strain LMG 20237 2.30.1.10.11.1269 OTU 1 seq prokMSA_id:44269 Nocardioides sp. C157 2.30.1.10.11.1328 OTU 2 seqs prokMSA_id:12761 Nocardioides plantarum str. Grainger J70 NCIMB 12834 prokMSA_id:12788 Nocardioides plantarum DSM 11054 . Z78211 2.30.1.10.11.1364 OTU 1 seq prokMSA_id:12770 clone Nb 2.30.1.10.11.1423 OTU 26 seqs prokMSA_id:12789 Nocardioides albus KCTC 9186 . AF004988 prokMSA_id:12793 Nocardioides sp. str. 15-59 prokMSA_id:12794 Nocardioides sp. str. 30-71. X86618 prokMSA_id:12795 Nocardioides sp. str. 80-80. X86619 prokMSA_id:12796 Nocardioides sp. str. 80-83. X86620 prokMSA_id:23823 Nocardioides luteus AF005007 prokMSA_id:24003 Nocardioides albus AF004989 prokMSA_id:25935 Nocardioides albus AF005004 prokMSA_id:26246 Nocardioides albus AF004996 prokMSA_id:27416 Nocardioides albus AF004992 prokMSA_id:29505 Nocardioides albus AF004993 prokMSA_id:31018 Nocardioides albus AF004999 prokMSA_id:34255 Nocardioides albus AF004995 prokMSA_id:35067 Nocardioides albus AF004997 prokMSA_id:35182 Nocardioides albus AF004991 prokMSA_id:38492 Nocardioides albus AF005000 prokMSA_id:38858 Nocardioides albus AF004998 prokMSA_id:43015 Nocardioides albus AF005002 prokMSA_id:44064 Nocardioides flavus AF005015 prokMSA_id:44488 Nocardioides albus AF005003 prokMSA_id:45362 Nocardioides flavus AF005014 prokMSA_id:45925 Nocardioides albus AF005001 prokMSA_id:46696 Nocardioides fulvus AF005016 prokMSA_id:48672 Nocardioides albus AF005005 prokMSA_id:74487 Nocardioides albus AF004994 prokMSA_id:74703 Nocardioides albus AF004990 2.30.1.10.11.1426 OTU 1 seq prokMSA_id:82319 Nocardioides sp. NS/27 strain NS/27 2.30.1.10.11.1796 OTU 1 seq prokMSA_id:75390 Nocardioides sp. 4P1-A 2.30.1.10.11.1823 OTU 2 seqs prokMSA_id:12762 Nocardioides sp. str. EL-17 lawson prokMSA_id:12763 Nocardioides sp 2.30.1.10.11.1900 OTU 1 seq prokMSA_id:83955 Actinobacteridae clone ACF6 2.30.1.10.11.1905 OTU 1 seq prokMSA_id:32247 Marmoricola aurantiacus 2.30.1.10.11.2005 OTU 1 seq prokMSA_id:61958 Nocardioides sp. V4.BO.15 2.30.1.10.12 KRIBBELLA_SUBGROUP 11 seqs 2.30.1.10.12.1275 OTU 1 seq prokMSA_id:12805 clone PENDANT-22 2.30.1.10.12.1839 OTU 10 seqs prokMSA_id:12801 Kribbella flavida IFO 14399 . AF005017 prokMSA_id:12803 Hongia koreensis str. LM 161T =IMSNU 50530T prokMSA_id:12804 Kribbella sandramycini ATCC 39419 . AF005020 prokMSA_id:33303 Nocardioidaceae str. IM-7091 prokMSA_id:44933 Nocardioidaceae str. IM-7757 AF131634 prokMSA_id:45801 Nocardioidaceae str. IM-7029 AF131632 prokMSA_id:48151 Nocardioidaceae str. IM-7770 prokMSA_id:55745 Nocardioides sp. YIM31075 AY082062 prokMSA_id:55832 Nocardioides sp. YIM31530 prokMSA_id:68399 Nocardioides sp. YIM30006 AY082061 2.30.1.11 MICROMONOSPORA_GROUP 210 seqs 2.30.1.11.2 PLM.TEREVASA_SUBGROUP 4 seqs 2.30.1.11.2.1462 OTU 4 seqs prokMSA_id:12807 Pilimelia anulata DSM 43039 prokMSA_id:12808 Pilimelia terevasa DSM 43040 prokMSA_id:12809 Pilimelia terevasa IFO 15964 prokMSA_id:72263 Pilimelia terevasa strain IFO15964 2.30.1.11.3 APL.PHILIPPINENSIS_SUBGROUP 24 seqs 2.30.1.11.3.1092 OTU 1 seq prokMSA_id:26880 clone 33-PA134B99 2.30.1.11.3.1309 OTU 1 seq prokMSA_id:53290 actinobacterium MB11A03 and 23S genes 2.30.1.11.3.1488 OTU 11 seqs prokMSA_id:12810 Actinoplanes philippinensis DSM 43019 prokMSA_id:12811 Actinoplanes philippinensis IFO 13878 prokMSA_id:12815 Actinoplanes philippinensis ATCC 12427 prokMSA_id:12816 Actinoplanes auranticolor IFO 12245 prokMSA_id:20207 Actinoplanes utahensis strain IMSNU 20044T prokMSA_id:24378 Actinoplanes sarveparensis prokMSA_id:28575 Actinoplanes sp. IFO 14460 prokMSA_id:36425 Actinoplanes campanulatus prokMSA_id:36612 Actinoplanes sp. IFO 14265 prokMSA_id:51900 Actinoplanes utahensis prokMSA_id:71458 Actinoplanes philippinensis strain IFO13878 2.30.1.11.3.1675 OTU 3 seqs prokMSA_id:12813 clone OCS155 prokMSA_id:54456 actinobacterium MB11C06 and 23S genes prokMSA_id:60634 firmicute clone AEGEAN_193 2.30.1.11.3.1732 OTU 1 seq prokMSA_id:60632 firmicute clone AEGEAN_163 2.30.1.11.3.1760 OTU 5 seqs prokMSA_id:18388 Actinoplanes sp. IFO 14264 prokMSA_id:26671 Actinoplanes purpeobrunneus prokMSA_id:28089 Actinoplanes purpeobrunneus strain IMSNU 22130 prokMSA_id:36605 Actinoplanes roseosporangius prokMSA_id:51486 Actinoplanes roseosporangius strain IMSNU 22133 2.30.1.11.3.1910 OTU 1 seq prokMSA_id:12817 Actinoplanes capillaceus str. K95-5561 2.30.1.11.3.1942 OTU 1 seq prokMSA_id:72061 gamma clone AEGEAN_195 2.30.1.11.4 APL.UTAHENSIS_SUBGROUP 26 seqs 2.30.1.11.4.1542 OTU 5 seqs prokMSA_id:12818 Actinoplanes cyaneus DSM 46137 prokMSA_id:12819 str. SR 83 prokMSA_id:21002 Actinoplanes cyaneus prokMSA_id:27565 Actinoplanes garbadinensis prokMSA_id:37443 Actinoplanes garbadinensis strain IMSNU 20040 2.30.1.11.4.1615 OTU 13 seqs prokMSA_id:12820 Actinoplanes regularis DSM 43151 prokMSA_id:17991 Actinoplanes sp. IFO 13943 prokMSA_id:24733 Actinoplanes italicus prokMSA_id:26230 Actinoplanes italicus complete prokMSA_id:32651 Actinoplanes derwentensis prokMSA_id:33156 Actinoplanes penicillatus strain IMSNU 22129 prokMSA_id:36834 Actinoplanes sp. IFO 14066 prokMSA_id:39135 Actinoplanes arizonaensis prokMSA_id:44805 Actinoplanes sp. IFO 13944 prokMSA_id:45208 Actinoplanes kinshanensis prokMSA_id:49393 Actinoplanes regularis prokMSA_id:51035 Actinoplanes derwentensis prokMSA_id:84117 Actinoplanes sp. strain 96 2.30.1.11.4.1633 OTU 7 seqs prokMSA_id:22339 Actinoplanes tuftoflagellus strain IMSNU 22135 prokMSA_id:23680 Actinoplanes digitatis strain IMSNU 22123T prokMSA_id:31721 Actinoplanes derwentensis strain IMSNU 20027T prokMSA_id:37247 Actinoplanes rutilosporangius prokMSA_id:39832 Actinoplanes pallidoaurantiacus strain IMSNU 22128 prokMSA_id:44085 Actinoplanes missouriensis strain IMSNU 22051T prokMSA_id:46305 Actinoplanes pyriformis strain IMSNU 22131 2.30.1.11.4.1931 OTU 1 seq prokMSA_id:12821 Actinoplanes utahensis str. Bayer AG SE50/110 ATCC 31044 2.30.1.11.5 CATENULOPLANES_SUBGROUP 24 seqs 2.30.1.11.5.1 CAT.JAPONICUS_SUBGROUP 2 seqs 2.30.1.11.5.1.1395 OTU 1 seq prokMSA_id:12825 Catenuloplanes japonicus IFO 14176 2.30.1.11.5.1.1414 OTU 1 seq prokMSA_id:12826 Catenuloplanes japonicus str. RA330 2.30.1.11.5.2 GM.TENUIS_SUBGROUP 10 seqs 2.30.1.11.5.2.1421 OTU 1 seq prokMSA_id:12829 Planopolyspora crispa JCM 9312 2.30.1.11.5.2.1870 OTU 1 seq prokMSA_id:12831 Glycomyces tenuis IFO 15904 2.30.1.11.5.2.1938 OTU 3 seqs prokMSA_id:12832 Glycomyces harbinensis str. LL-DO5139 IFO 14487 prokMSA_id:33446 Glycomyces harbinensis strain IMSNU 20070T prokMSA_id:42225 Glycomyces rutgersensis strain IMSNU 22074T 2.30.1.11.5.2.1972 OTU 5 seqs prokMSA_id:12828 Catenuloplanes japonicus DSM 44102 prokMSA_id:12830 Catenuloplanes japonicus IFO 14176 prokMSA_id:41503 Actinoplanes regularis prokMSA_id:77587 Catenuloplanes atrovinosus strain IMSNU 22012T prokMSA_id:78124 Catenuloplanes indicus strain IMSNU 22099T 2.30.1.11.5.3 CCP.CAERULEUS_SUBGROUP 12 seqs 2.30.1.11.5.3.1316 OTU 3 seqs prokMSA_id:38986 Actinoplanes globisporus prokMSA_id:40065 Actinoplanes globisporus strain IMSNU 20030T AJ277570 prokMSA_id:52031 Actinoplanes globisporus 2.30.1.11.5.3.1689 OTU 2 seqs prokMSA_id:12834 Actinoplanes brasiliensis DSM 43805 prokMSA_id:17380 Actinoplanes yunnanensis 2.30.1.11.5.3.1876 OTU 1 seq prokMSA_id:12835 Couchioplanes caeruleus subsp. caeruleus IFO 13939 2.30.1.11.5.3.2051 OTU 6 seqs prokMSA_id:12836 Couchioplanes caeruleus subsp. caeruleus IFO 13939 prokMSA_id:12837 Catenuloplanes caeruleus subsp. azureus DSM 44103 prokMSA_id:12838 Couchioplanes caeruleus subsp. azureus IFO 13993 prokMSA_id:40127 Actinoplanes auranticolor prokMSA_id:46296 Actinoplanes sp. IFO 14428 prokMSA_id:52136 Actinoplanes teichomyceticus strain IMSNU 20043 AJ277584 2.30.1.11.6 SP.YAMANASHIENSIS 1 seq 2.30.1.11.6.1890 OTU 1 seq prokMSA_id:12839 Spirilliplanes yamanashiensis str. YU127-1 IFO 15828 2.30.1.11.8 MMS.OLIVASTEROSPORA_SUBGROUP 16 seqs 2.30.1.11.8.1120 OTU 15 seqs prokMSA_id:19482 Actinoplanes digitatis prokMSA_id:23936 Actinoplanes humidus complete AB037004 prokMSA_id:24528 Actinoplanes digitatis prokMSA_id:27800 Actinoplanes violaceus strain IMSNU 22136 prokMSA_id:39010 Actinoplanes consettensis AB036996 prokMSA_id:41400 Actinoplanes missouriensis prokMSA_id:49242 Actinoplanes nipponensis prokMSA_id:51111 Actinoplanes consettensis AB048214 prokMSA_id:51864 Actinoplanes violaceus prokMSA_id:64357 Actinoplanes sp. YM-3 prokMSA_id:83420 Actinoplanes sp. strain 20 prokMSA_id:84068 Actinoplanes sp. strain 19 prokMSA_id:84925 Actinoplanes sp. strain 46 prokMSA_id:85492 Actinoplanes sp. strain 159 prokMSA_id:93220 Verrucosispora sp. e37 AY360149 2.30.1.11.8.1727 OTU 1 seq prokMSA_id:44279 Catellatospora koreensis 2.30.1.11.9 MMS.ECHINOSPORA_SUBGROUP 75 seqs 2.30.1.11.9.1088 OTU 1 seq prokMSA_id:58318 clone ASL8 2.30.1.11.9.1159 OTU 72 seqs prokMSA_id:12840 Verrucosispora gifhornensis str. HR1-2 DSM 44337 prokMSA_id:12841 Micromonospora olivasterospora str. MK70 DSM 43868 prokMSA_id:12842 Micromonospora peucetica str. DSM 43363 strain prokMSA_id:12843 Micromonospora purpureochromogenes DSM 43821 prokMSA_id:12844 Micromonospora narashino str. DSM 43172 prokMSA_id:12845 Micromonospora brunnescens str. DSM 43902 strain prokMSA_id:12847 Micromonospora globosa str. DSM 43893 prokMSA_id:12848 Micromonospora halophytica subsp. halophytica prokMSA_id:12849 Micromonospora chersinia DSM 44151 prokMSA_id:12850 Micromonospora citrea str. DSM 43903 prokMSA_id:12851 Micromonospora echinobrunnea str. DSM 43913 prokMSA_id:12852 Micromonospora coerulea DSM 43143 prokMSA_id:12853 Micromonospora echinospora subsp. echinospora DSM 43816 prokMSA_id:12854 Micromonospora fulviviridis str. DSM 43906 prokMSA_id:12855 Micromonospora aurantiaca DSM 43813 prokMSA_id:12856 Micromonospora aurantiaca str. W2b prokMSA_id:12857 Micromonospora fulvopurpureus str. DSM 43918 prokMSA_id:12858 Micromonospora globosa str. DSM 43170 prokMSA_id:12859 Micromonospora lacustris str. DSM 43908 prokMSA_id:12860 Micromonospora chalcea DSM 43026 prokMSA_id:12862 Micromonospora chalcea IFO 12135 prokMSA_id:12863 Micromonospora chalcea ATCC 12452 prokMSA_id:12864 Micromonospora brunnea DSM 43814 prokMSA_id:12865 Micromonospora rosaria DSM 803 prokMSA_id:12866 Micromonospora rhodorangea DSM 43822 prokMSA_id:12867 Micromonospora inositola DSM 43819 prokMSA_id:12868 Micromonospora halophytica subsp. nigra DSM 43818 prokMSA_id:12870 Micromonospora echinospora subsp. ferruginea DSM 43141 prokMSA_id:12871 Micromonospora sagamiensis subsp. sagamiensis str. DSM 43912 prokMSA_id:12872 Micromonospora echinoaurantiaca str. DSM 44390 prokMSA_id:12873 Micromonospora inyoensis str. DSM 46123 prokMSA_id:12874 Micromonospora purpurea DSM 43036 prokMSA_id:12875 Micromonospora melanospora str. DSM 43126 prokMSA_id:12876 Frankia sp. str. G48 prokMSA_id:12877 Micromonospora echinospora subsp. pallida DSM 43817 prokMSA_id:12878 Micromonospora viridifaciens str. DSM 43909 prokMSA_id:12879 Micromonospora carbonacea subsp. carbonacea DSM 43168 prokMSA_id:12880 Micromonospora Y10 str. Y10 prokMSA_id:12883 Micromonospora floridensis str. DSM 43907 prokMSA_id:12884 str. SR 53 prokMSA_id:12885 Micromonospora carbonacea subsp. aurantiaca prokMSA_id:22701 Actinoplanes ferrugineus strain IMSNU 22125T prokMSA_id:23551 Actinoplanes deccanensis prokMSA_id:30667 Actinoplanes ferrugineus prokMSA_id:41171 Actinoplanes ferrugineus prokMSA_id:42214 Micromonospora sp. 0138 prokMSA_id:43093 Actinoplanes durhamensis strain IMSNU 22124T prokMSA_id:44122 Actinoplanes deccanensis strain IMSNU 20026T prokMSA_id:44843 Micromonospora matsumotoense prokMSA_id:51187 Actinoplanes durhamensis prokMSA_id:52270 Actinoplanes humidus strain IMSNU 22051T prokMSA_id:52957 Actinoplanes durhamensis prokMSA_id:56010 Micromonospora sp. CNH512 prokMSA_id:59319 Micromonospora sp. CNH394 prokMSA_id:68757 Glacial ice G200-C39 prokMSA_id:78090 Catellatospora ishikariense strain IMSNU 22004 prokMSA_id:82514 Micromonospora endolithica strain DSM 44398T prokMSA_id:82848 Micromonospora sp. N0075 AY221487 prokMSA_id:83827 Micromonospora sp. N0179 AY221503 prokMSA_id:83918 Micromonospora sp. N0072 AY221484 prokMSA_id:84504 Micromonospora sp. N0074 AY221486 prokMSA_id:84757 Micromonospora sp. N0152 AY221493 prokMSA_id:84817 Micromonospora sp. N0088 AY221489 prokMSA_id:85111 Micromonospora sp. N0163 AY221501 prokMSA_id:85320 Micromonospora sp. N0156 AY221496 prokMSA_id:85587 Micromonospora sp. N0093 AY221490 prokMSA_id:85915 Micromonospora sp. N0168 AY221502 prokMSA_id:88326 Micromonospora sp. 40010 AY295799 prokMSA_id:93232 Micromonospora sp. e3 AY360151 prokMSA_id:93360 Micromonospora sp. e32 AY360159 prokMSA_id:93720 Verrucosispora sp. e80 AY360150 prokMSA_id:94058 Micromonospora sp. e4 AY360152 2.30.1.11.9.1830 OTU 1 seq prokMSA_id:12861 clone TM214 2.30.1.11.9.1847 OTU 1 seq prokMSA_id:30373 Actinoplanes sp. IM-4188 2.30.1.11.10 MMS.CARBONACEA_SUBGROUP 4 seqs 2.30.1.11.10.1641 OTU 4 seqs prokMSA_id:12881 Micromonospora yulongensis str. DSM 43915 prokMSA_id:12882 Micromonospora fulvoviolaceus str. DSM 43905 prokMSA_id:83284 Micromonospora sp. N0161 prokMSA_id:93558 Micromonospora sp. e7 AY360154 2.30.1.11.11 CTL.FERRUGINEA 3 seqs 2.30.1.11.11.1722 OTU 3 seqs prokMSA_id:12886 Catellatospora ferruginea DSM 44099 prokMSA_id:27139 Catellatospora sp. IM-6046 AF131355 prokMSA_id:38053 Catellatospora ferruginea 2.30.1.11.12 CTL.CITREA_SUBGROUP 10 seqs 2.30.1.11.12.1285 OTU 2 seqs prokMSA_id:12890 Catellatospora tsunoense DSM 44101 prokMSA_id:42584 Catellatospora tsunoense 2.30.1.11.12.1821 OTU 7 seqs prokMSA_id:12887 Catellatospora citrea DSM 44098 prokMSA_id:12888 Catellatospora citrea subsp. citrea IFO 14495 prokMSA_id:12889 Catellatospora citrea subsp. citrea DSM 44097 prokMSA_id:34467 Catellatospora sp prokMSA_id:35366 Catellatospora citrea subsp. citrea prokMSA_id:46148 Catellatospora citrea subsp. methionotrophica prokMSA_id:74352 Catellatospora citrea strain IFO14495 2.30.1.11.12.1997 OTU 1 seq prokMSA_id:45550 Catellatospora sp. IM-7774 2.30.1.11.13 DCT.AURANTIACUM_SUBGROUP 23 seqs 2.30.1.11.13.1219 OTU 1 seq prokMSA_id:12902 Dactylosporangium thailandense DSM 43158 2.30.1.11.13.1572 OTU 4 seqs prokMSA_id:28171 Virgosporangium aurantiacum strain:YU438-5 prokMSA_id:34942 Virgosporangium ochraceum strain:YU793-41 prokMSA_id:37925 Virgosporangium ochraceum strain:YU794-41 prokMSA_id:52890 Virgosporangium ochraceum strain:YU655-43 2.30.1.11.13.1750 OTU 6 seqs prokMSA_id:12891 Dactylosporangium vinaceum IFO 14181 prokMSA_id:12900 Dactylosporangium matsuzakiense DSM 43810 prokMSA_id:12904 Dactylosporangium matsuzakiense IFO 14259 prokMSA_id:12906 Dactylosporangium vinaceum DSM 43823 prokMSA_id:26254 Actinomycete SF2809 complete prokMSA_id:70854 Dactylosporangium vinaceum strain IFO14181 D86939 2.30.1.11.13.1770 OTU 6 seqs prokMSA_id:12893 Dactylosporangium roseum IFO 14352 prokMSA_id:12898 Dactylosporangium fulvum IFO 14381 prokMSA_id:12899 Dactylosporangium roseum IFO 14352 prokMSA_id:12903 Dactylosporangium roseum DSM 43916 prokMSA_id:12907 Dactylosporangium fulvum DSM 43917 prokMSA_id:71488 Dactylosporangium roseum strain IFO14352 2.30.1.11.13.1766 OTU 6 seqs prokMSA_id:12892 Dactylosporangium aurantiacum str. D-748 ATCC 23491 prokMSA_id:12895 Dactylosporangium aurantiacum str. D-748 IFO 12592 prokMSA_id:12896 Dactylosporangium "salmoneum" DSM 43910 prokMSA_id:12897 Dactylosporangium "salmoneum" IFO 14103 prokMSA_id:12905 Dactylosporangium aurantiacum str. D-748 DSM 43157 prokMSA_id:73463 Dactylosporangium auranticum strain IFO12592 D85480 2.30.1.12 SACCHAROPOLYSPORA_GROUP 198 seqs 2.30.1.12.1 PSC.HALOPHOBICA_SUBGROUP 41 seqs 2.30.1.12.1.1202 OTU 1 seq prokMSA_id:33771 Pseudonocardia sp. IM-6071 2.30.1.12.1.1326 OTU 8 seqs prokMSA_id:12920 Pseudonocardia compacta DSM 43592 . X76959 prokMSA_id:12922 Pseudonocardia alni str. 3LS DSM 44104 prokMSA_id:17516 Pseudonocardia alni strain IMSNU 20049T prokMSA_id:43762 Pseudonocardia autotrophica strain IMSNU 20050T prokMSA_id:51374 Pseudonocardia compacta strain IMSNU 20111T prokMSA_id:74545 Pseudonocardia sp. strain IMSNU 22071 AJ252831 prokMSA_id:82726 Pseudonocardiaceae T4 prokMSA_id:88738 Pseudonocardia antarctica strain DVS 5a1T AJ576010 2.30.1.12.1.1346 OTU 1 seq prokMSA_id:12923 str. SR 244a 2.30.1.12.1.1362 OTU 1 seq prokMSA_id:12926 Pseudonocardia asaccharolytica str. 580 DSM 44247 2.30.1.12.1.1402 OTU 1 seq prokMSA_id:17003 Actinobispora alaniniphila 2.30.1.12.1.1530 OTU 1 seq prokMSA_id:44587 Pseudonocardia thermophila strain IMSNU 20112T 2.30.1.12.1.1528 OTU 1 seq prokMSA_id:35897 clone t001 2.30.1.12.1.1607 OTU 1 seq prokMSA_id:18239 Actinobispora xinjiangensis 2.30.1.12.1.1863 OTU 22 seqs prokMSA_id:12913 Pseudonocardia halophobica DSM 43089 prokMSA_id:12916 Actinobispora yunnanensis IFO 15681 prokMSA_id:12927 Pseudonocardia halophobica DSM 43089 prokMSA_id:12930 Pseudonocardia sulfidoxydans str. 592 DSM 44248 prokMSA_id:12931 Pseudonocardia K1 str. K1. AJ249200 prokMSA_id:12934 Actinobispora yunnanensis str. Y-11981 CCTCC M90959 . AF0567 prokMSA_id:12937 Kibdelosporangium aridum subsp. aridum prokMSA_id:18128 Pseudonocardia sulfidoxydans prokMSA_id:18313 Pseudonocardia hydrocarbonoxydans strain IMSNU 22140T prokMSA_id:20264 Pseudonocardia halophobica strain IMSNU 21327T prokMSA_id:22784 #0649-1I18 prokMSA_id:27130 Actinobispora aurantiaca prokMSA_id:30436 Soil strain LM 157 prokMSA_id:30607 Kibdelosporangium aridum subsp. aridum strain DSM 43828T prokMSA_id:31830 Actinobispora yunnanensis strain IMSNU 22019T prokMSA_id:43413 Pseudonocardia petroleophila strain IMSNU 22072T AJ252828 prokMSA_id:50638 Pseudonocardia zijingensis prokMSA_id:56399 Kibdelosporangium aridum subsp. largum strain DSM 44150T prokMSA_id:77990 actinobacterium clone:APe4_52 AB074634 prokMSA_id:85008 Pseudonocardia benzenivorans prokMSA_id:85863 Pseudonocardia sp. M1 prokMSA_id:91804 Pseudonocardia dioxanivorans AY340622 2.30.1.12.1.1881 OTU 1 seq prokMSA_id:46023 #0319-6A24 2.30.1.12.1.1932 OTU 1 seq prokMSA_id:42025 Pseudonocardia spinospora isolate LM 141T 2.30.1.12.1.1971 OTU 1 seq prokMSA_id:51028 Pseudonocardia saturnea strain IMSNU 20052T 2.30.1.12.1.2029 OTU 1 seq prokMSA_id:35860 Actinobacterium YNPRH1P-1 2.30.1.12.2 KIB.ARIDUM_SUBGROUP 1 seq 2.30.1.12.2.1430 OTU 1 seq prokMSA_id:12936 Kibdelosporangium aridum subsp. aridum 2.30.1.12.3 SCP.HIRSUTA_SUBGROUP 15 seqs 2.30.1.12.3.1250 OTU 1 seq prokMSA_id:50663 Saccharopolyspora sp. IM-8155 2.30.1.12.3.1470 OTU 1 seq prokMSA_id:12941 Saccharopolyspora thermophilus str. str216 2.30.1.12.3.1472 OTU 1 seq prokMSA_id:12942 Saccharopolyspora flava str. AS4.1520T 2.30.1.12.3.1468 OTU 1 seq prokMSA_id:12940 Saccharopolyspora spinosa str. A83543.1 DSM 44228 2.30.1.12.3.1475 OTU 1 seq prokMSA_id:12944 Saccharopolyspora hirsuta subsp. hirsuta ATCC 27875 2.30.1.12.3.1473 OTU 1 seq prokMSA_id:12943 Saccharopolyspora taberi str. LL-WRAT-210 DSM 43856 2.30.1.12.3.1495 OTU 1 seq prokMSA_id:12950 Actinopolyspora mortivallis JCM 7550 2.30.1.12.3.1496 OTU 1 seq prokMSA_id:12952 Actinopolyspora halophila 2.30.1.12.3.1566 OTU 1 seq prokMSA_id:41449 Actinopolyspora indiensis 2.30.1.12.3.1731 OTU 2 seqs prokMSA_id:16982 Saccharopolyspora sp. IM-6850 prokMSA_id:37273 Saccharopolyspora sp. IM-6889 2.30.1.12.3.1849 OTU 3 seqs prokMSA_id:17258 Saccharopolyspora sp. IM-8127 prokMSA_id:17604 Saccharopolyspora sp. IM-6897 prokMSA_id:70980 Saccharopolyspora sp. IM-7019 2.30.1.12.3.1904 OTU 1 seq prokMSA_id:45443 Saccharopolyspora sp. IM-8110 2.30.1.12.4 SCT.AUSTRALIENSIS_SUBGROUP 40 seqs 2.30.1.12.4.1125 OTU 4 seqs prokMSA_id:12979 Actinokineospora diospyrosa NRRL B-24047 prokMSA_id:12996 Actinokineospora globicatena NRRL B-24048 prokMSA_id:35192 Actinokineospora sp. YU 873-1 prokMSA_id:40462 Actinokineospora terrae 2.30.1.12.4.1126 OTU 2 seqs prokMSA_id:12986 Actinosynnema mirum IFO 14064 prokMSA_id:70383 Actinosynnema mirum strain IFO14064 2.30.1.12.4.1167 OTU 1 seq prokMSA_id:33829 Actinokineospora enzanensis 2.30.1.12.4.1249 OTU 1 seq prokMSA_id:47825 Actinokineospora sp. YU 923-201 2.30.1.12.4.1438 OTU 1 seq prokMSA_id:20152 ORGANIC-10 2.30.1.12.4.1463 OTU 21 seqs prokMSA_id:12958 Saccharothrix NRRL B-16133 NRRL B-16133 prokMSA_id:12959 Saccharothrix espanaensis NRRL 15764 prokMSA_id:12960 Saccharothrix australiensis str. LL-BM782Ce8 NRRL 11239 prokMSA_id:12963 Saccharothrix coeruleofusca NRRL B-16115 prokMSA_id:12970 Saccharothrix texasensis NRRL B-16107 prokMSA_id:12971 Saccharothrix texasensis NRRL B-16134 prokMSA_id:12973 Saccharothrix syringae NRRL B-16468 prokMSA_id:12974 Saccharothrix NRRL B-16108 NRRL B-16108 prokMSA_id:50409 Saccharothrix texasensis strain AS4.1186 prokMSA_id:60437 Saccharothrix sp. AS 4.1731 prokMSA_id:60450 Saccharothrix algeriensis prokMSA_id:63693 Saccharothrix sp. 98-41-281A complete prokMSA_id:63694 Saccharothrix sp. 98-41-338A complete prokMSA_id:63695 Saccharothrix sp. 98-41-143A complete prokMSA_id:63696 Saccharothrix sp. 98-10-099A complete prokMSA_id:69794 Saccharothrix sp. 99-08-211A complete AF361323 prokMSA_id:70369 Saccharothrix sp. 99-08-222A complete AF328413 prokMSA_id:70891 Saccharothrix sp. 99-08-221A complete prokMSA_id:71267 Saccharothrix sp. 99-08-243A complete prokMSA_id:71761 Saccharothrix sp. 98-05-041A complete AF328411 prokMSA_id:73943 Saccharothrix sp. 99-08-236A complete 2.30.1.12.4.1951 OTU 1 seq prokMSA_id:12975 Saccharothrix longispora NRRL B-116116 2.30.1.12.4.1954 OTU 1 seq prokMSA_id:12978 Actinosynnema pretiosum subsp. pretiosum NRRL B-16060 2.30.1.12.4.1975 OTU 1 seq prokMSA_id:12980 Saccharothrixopsis albidus str. AS4.0423 2.30.1.12.4.1984 OTU 1 seq prokMSA_id:12984 Saccharothrix tangerinus str. MK27-91F2 2.30.1.12.4.1988 OTU 1 seq prokMSA_id:12987 Kutzneria viridogrisea JCM 3282 2.30.1.12.4.2007 OTU 1 seq prokMSA_id:12990 Actinoalloteichus cyanogriseus IFO 14455 2.30.1.12.4.2009 OTU 1 seq prokMSA_id:12992 Kutzneria viridogrisea DSM 43850 2.30.1.12.4.2011 OTU 1 seq prokMSA_id:12995 Actinokineospora inagensis NRRL B-24050 2.30.1.12.4.2010 OTU 2 seqs prokMSA_id:12993 Actinokineospora riparia IFO 14541 . X76953 prokMSA_id:12994 Actinokineospora riparia NRRL B-16432 2.30.1.12.5 AMY.ORIENTALIS_SUBGROUP 75 seqs 2.30.1.12.5.1104 OTU 10 seqs prokMSA_id:55702 Amycolatopsis sp. GY053 prokMSA_id:59956 Amycolatopsis sp. GY311 prokMSA_id:59968 Amycolatopsis sp. GY116 prokMSA_id:63752 Amycolatopsis mediterranei strain KCTC 1739T prokMSA_id:63968 Amycolatopsis sp. GY144 prokMSA_id:63971 Amycolatopsis sp. GY124 prokMSA_id:63976 Amycolatopsis sp. GY051 prokMSA_id:67634 Amycolatopsis mediterranei strain F1/24 prokMSA_id:79363 Amycolatopsis mediterranei strain NRRL B-3240 prokMSA_id:85299 Amycolatopsis sp. GY125 2.30.1.12.5.1119 OTU 10 seqs prokMSA_id:59481 Amycolatopsis tolypophora strain DSM 44544T prokMSA_id:59958 Amycolatopsis sp. GY207 prokMSA_id:59959 Amycolatopsis sp. GY286 prokMSA_id:59960 Amycolatopsis sp. GY269 prokMSA_id:59964 Amycolatopsis sp. GY211 prokMSA_id:59967 Amycolatopsis sp. GY212 prokMSA_id:59971 Amycolatopsis sp. GY064 prokMSA_id:59976 Amycolatopsis sp. GY056 prokMSA_id:59977 Amycolatopsis sp. GY049 prokMSA_id:59978 Amycolatopsis sp. GY048 2.30.1.12.5.1355 OTU 11 seqs prokMSA_id:13004 Amycolatopsis mediterranei str. ME 83/973 ATCC 13685 . X7695 prokMSA_id:55272 Amycolatopsis sp. GY295 prokMSA_id:55691 Amycolatopsis sp. GY131 prokMSA_id:59482 Amycolatopsis balhimycetica strain DSM 44591T prokMSA_id:63974 Amycolatopsis sp. GY055 prokMSA_id:63975 Amycolatopsis sp. GY109 prokMSA_id:79479 Amycolatopsis kentuckyensis prokMSA_id:82587 Amycolatopsis sp. GY154 prokMSA_id:85001 Amycolatopsis sp. GY179 prokMSA_id:85854 Amycolatopsis sp. GY299 prokMSA_id:91736 Amycolatopsis mediterranei strain IMSNU 20056T AJ293754 2.30.1.12.5.1388 OTU 1 seq prokMSA_id:37332 Amycolatopsis sacchari 2.30.1.12.5.1393 OTU 1 seq prokMSA_id:13005 Amycolatopsis sulphurea DSM 46092 2.30.1.12.5.1594 OTU 1 seq prokMSA_id:63969 Amycolatopsis sp. GY307 2.30.1.12.5.1661 OTU 22 seqs prokMSA_id:12997 Amycolatopsis orientalis subsp. orientalis DSM 40040 . X7695 prokMSA_id:12998 Amycolatopsis sp. str. MG 417 prokMSA_id:13000 Amycolatopsis orientalis subsp. orientalis IFO 12806 . D8693 prokMSA_id:13002 Amycolatopsis alba str. A83850 DSM 44262 prokMSA_id:13003 Amycolatopsis coloradensis NRRL 3218 prokMSA_id:23414 Amycolatopsis keratinophila strain DSM 44409T prokMSA_id:23759 Amycolatopsis orientalis strain IMSNU 20058T prokMSA_id:25029 Amycolatopsis azurea strain IMSNU 20053T prokMSA_id:51483 Amycolatopsis coloradensis strain DSM 44225T prokMSA_id:55883 Amycolatopsis decaplanensis strain DSM 44594T prokMSA_id:59484 Amycolatopsis nogabecetica strain DSM 44586T prokMSA_id:59492 Amycolatopsis japonica strain DSM 44213T AJ508236 prokMSA_id:59962 Amycolatopsis sp. GY293 prokMSA_id:59963 Amycolatopsis sp. GY248 AY129768 prokMSA_id:59965 Amycolatopsis sp. GY249 prokMSA_id:59966 Amycolatopsis sp. GY246 prokMSA_id:59969 Amycolatopsis sp. GY091 AY129761 prokMSA_id:59970 Amycolatopsis sp. GY080 prokMSA_id:88764 Amycolatopsis orientalis subsp. lurida strain DSM 43134T AJ5 prokMSA_id:91198 Amycolatopsis orientalis strain IMSNU 20057T AJ293755 prokMSA_id:91582 Amycolatopsis coloradensis strain MSNU 22096T AJ293753 prokMSA_id:97470 Amycolatopsis sp. 340C07 AB124414 2.30.1.12.5.1824 OTU 5 seqs prokMSA_id:59955 Amycolatopsis sp. GY088 AY129774 prokMSA_id:63970 Amycolatopsis sp. GY142 prokMSA_id:63972 Amycolatopsis sp. GY073 prokMSA_id:63973 Amycolatopsis sp. GY024 prokMSA_id:91887 Amycolatopsis sulphurea strain IMSNU 20060T AJ293756 2.30.1.12.5.1867 OTU 7 seqs prokMSA_id:59483 Amycolatopsis vancoresmycetica strain DSM 44592T prokMSA_id:59974 Amycolatopsis sp. GY062 prokMSA_id:59975 Amycolatopsis sp. GY052 prokMSA_id:67635 Amycolatopsis mediterranei strain DSM 46095 prokMSA_id:79251 Amycolatopsis pretoriensis prokMSA_id:79423 Amycolatopsis lexingtonensis prokMSA_id:85437 Amycolatopsis sp. GY203 2.30.1.12.5.1907 OTU 1 seq prokMSA_id:35684 Amycolatopsis albidoflavus strain IMSNU 22139T 2.30.1.12.5.1928 OTU 2 seqs prokMSA_id:13006 Amycolatopsis thermoflava str. N1165 prokMSA_id:27705 Amycolatopsis methanolica strain IMSNU 20055T 2.30.1.12.5.1957 OTU 1 seq prokMSA_id:47068 Amycolatopsis sp. IM-1163 2.30.1.12.5.2033 OTU 3 seqs prokMSA_id:49974 Streptomyces lactamdurans prokMSA_id:54677 Nocardia lactamdurans and 23S genes and ITS1 AJ243301 prokMSA_id:70505 Streptomyces lactamdurans AB045862 2.30.1.12.6 SCM.VIRIDIS_SUBGROUP 26 seqs 2.30.1.12.6.1343 OTU 14 seqs prokMSA_id:13010 Saccharomonospora sp. str. K180; 30Urbakt prokMSA_id:13011 Saccharomonospora caesia str. SB-01. Z38022 prokMSA_id:13014 Saccharomonospora caesia str. SB-22. Z38023 prokMSA_id:13015 Saccharomonospora glauca str. SB-37. Z38006 prokMSA_id:13022 Saccharomonospora glauca str. K169 DSM 43769 prokMSA_id:13023 Saccharomonospora caesia str. SB-58. Z38024 prokMSA_id:13024 Saccharomonospora cyanea str. K168; NA134 prokMSA_id:13026 Saccharomonospora glauca str. K202; J-S.Ruan 350. Z38004 prokMSA_id:13029 Saccharomonospora caesia str. K163 DSM 43068. Z38019 prokMSA_id:13030 Saccharomonospora azurea str. K161; NA128 . Z38017 prokMSA_id:28485 Saccharomonospora xinjiangensis strain DSM 44391T prokMSA_id:43601 Saccharomonospora glauca strain KCTC 9645 AF139879 prokMSA_id:74805 Saccharomonospora glauca strain KCTC 3673 AF139880 prokMSA_id:81456 Saccharomonospora sp. PAN A5 2.30.1.12.6.1441 OTU 1 seq prokMSA_id:18682 clone KS65 2.30.1.12.6.1474 OTU 1 seq prokMSA_id:13016 Prauserella rugosa DSM 43194 2.30.1.12.6.1533 OTU 4 seqs prokMSA_id:13013 Saccharomonospora viridis str. K191; Greiner-Mai R25. Z38021 prokMSA_id:13017 Saccharomonospora viridis str. SB-33. Z38005 prokMSA_id:13019 Saccharomonospora viridis str. K73 NCIMB 9602 . Z38007 prokMSA_id:13020 Saccharomonospora thermoviridis str. str22.1 2.30.1.12.6.1540 OTU 1 seq prokMSA_id:13027 clone TAYNAYA-20 2.30.1.12.6.1648 OTU 1 seq prokMSA_id:19135 Saccharomonospora halophila strain DSM 44411T 2.30.1.12.6.1789 OTU 3 seqs prokMSA_id:26772 actinobacterium MERTZ_21CM_154 prokMSA_id:48844 actinobacterium MERTZ_0CM_320 prokMSA_id:50134 actinobacterium MERTZ_2CM_348 AF424422 2.30.1.12.6.1953 OTU 1 seq prokMSA_id:13031 Saccharomonospora guangxiensis str. str4 2.30.1.13 MYCOBACTERIUM_SUBDIVISION 816 seqs 2.30.1.13.1 MYCOBACTERIA_GROUP 262 seqs 2.30.1.13.1.1 MYB.TUBERCULOSIS_SUBGROUP 233 seqs 2.30.1.13.1.1.1093 OTU 1 seq prokMSA_id:13140 Mycobacterium triviale ATCC 23292 2.30.1.13.1.1.1114 OTU 1 seq prokMSA_id:13222 Mycobacterium PENDANT-38 2.30.1.13.1.1.1117 OTU 1 seq prokMSA_id:13223 Mycobacterium ACE-41 2.30.1.13.1.1.1134 OTU 2 seqs prokMSA_id:13153 Mycobacterium sp. str. IWGMT 90247 prokMSA_id:13154 Mycobacterium sp. str. IWGMT 90233. X88918 2.30.1.13.1.1.1172 OTU 1 seq prokMSA_id:13166 clone Ep_T1.252 2.30.1.13.1.1.1175 OTU 6 seqs prokMSA_id:13162 Mycobacterium xenopi ATCC 19250 prokMSA_id:13235 Mycobacterium xenopi ATCC 19250 prokMSA_id:27854 Mycobacterium sydneyiensis AF101243 prokMSA_id:32230 Mycobacterium heckeshornense prokMSA_id:39844 Mycobacterium cf. xenopi 'Hymi_Wue Tb_939/99' AJ243481 prokMSA_id:78273 Mycobacterium xenopi 2.30.1.13.1.1.1180 OTU 9 seqs prokMSA_id:13040 Mycobacterium heidelbergense str. 2554/91 ATCC 51253 . AJ000 prokMSA_id:13041 Mycobacterium heidelbergense. X70960 prokMSA_id:13043 Mycobacterium sp. str. IWGMT 90174 prokMSA_id:13111 Mycobacterium sp. str. IWGMT 90210 prokMSA_id:38495 Mycobacterium kubicae prokMSA_id:54449 Mycobacterium palustre and internal transcribed spacer 1 ITS prokMSA_id:73821 Mycobacterium heidelbergense strain ITG 7971 MB43 prokMSA_id:85375 Mycobacterium sp. SA394 and ITS1 isolate SA394 prokMSA_id:85394 Mycobacterium sp. YM12 2.30.1.13.1.1.1187 OTU 22 seqs prokMSA_id:13048 Mycobacterium madagascariense ATCC 49865 prokMSA_id:13056 Mycobacterium obuense ATCC 27023 prokMSA_id:13076 Mycobacterium FI-25796 str. FI-25796 prokMSA_id:13099 Mycobacterium sp. str. SRB1948-E04 prokMSA_id:13105 Mycobacterium aurum ATCC 23366 prokMSA_id:13137 Mycobacterium hodleri str. EMI2 DSM 44183 prokMSA_id:13138 Mycobacterium isoniacini str. INA-I prokMSA_id:13141 Mycobacterium gilvum ATCC 43909 prokMSA_id:13148 Mycobacterium sp. str. MCRO 10 prokMSA_id:13151 Mycobacterium thermoresistibile ATCC 19527 prokMSA_id:13158 Mycobacterium C2-3 str. C2-3 prokMSA_id:13172 Mycobacterium gadium ATCC 27726 prokMSA_id:13179 Mycobacterium vaccae ATCC 15483 prokMSA_id:13253 Mycobacterium sp. str. MA-112/96 prokMSA_id:23360 Mycobacterium vaccae prokMSA_id:32288 Mycobacterium tokaiense prokMSA_id:34222 Mycobacterium brumae prokMSA_id:67497 Mycobacterium sp. HXN100 AJ441306 prokMSA_id:68741 Glacial ice SB12K-2-16 prokMSA_id:70827 Mycobacterium aichiense strain JS618 prokMSA_id:81725 Mycobacterium sp. clone VC17 prokMSA_id:86938 Mycobacterium sp. PP1 strain:RP1 AB009578 2.30.1.13.1.1.1204 OTU 1 seq prokMSA_id:13039 Mycobacterium sp 2.30.1.13.1.1.1239 OTU 6 seqs prokMSA_id:13118 Mycobacterium ratisbonense prokMSA_id:13191 Mycobacterium anthracenicum prokMSA_id:13194 Mycobacterium M0183 str. M0183 prokMSA_id:19289 Mycobacterium ratisbonense strain SD4 prokMSA_id:28701 Mycobacterium mucogenicum strain ATCC 49650 prokMSA_id:67346 Mycobacterium sp. BPC5 2.30.1.13.1.1.1242 OTU 1 seq prokMSA_id:13266 Mycobacterium tuberculosis str. H37/Rv 2.30.1.13.1.1.1262 OTU 17 seqs prokMSA_id:13047 Mycobacterium hiberniae str. Hi 11 ATCC 49874 prokMSA_id:13103 Mycobacterium gordonae str. P-15 ATCC 14470 . M29563 prokMSA_id:13115 Mycobacterium sp prokMSA_id:13120 Mycobacterium chitae ATCC 19627 prokMSA_id:13146 Mycobacterium elephantis prokMSA_id:13147 Mycobacterium sp. str. MCRO 7 prokMSA_id:13197 Mycobacterium nonchromogenicum ATCC 19530 prokMSA_id:13198 Mycobacterium sp. str. MCRO 6 prokMSA_id:13239 Mycobacterium asiaticum str. N6IH ATCC 25276 . M29556 prokMSA_id:13261 Mycobacterium confluentis prokMSA_id:27078 Mycobacterium holsaticum strain 1406 prokMSA_id:27836 Mycobacterium elephantis prokMSA_id:42140 Mycobacterium engbaekii prokMSA_id:50846 Mycobacterium sp. MB65 strain MB65 AJ416911 prokMSA_id:72357 Mycobacterium fallax prokMSA_id:78035 Mycobacterium elephantis strain FI-13900 prokMSA_id:92711 Mycobacterium sp. NIPHL130302 AY360325 2.30.1.13.1.1.1308 OTU 6 seqs prokMSA_id:13150 Mycobacterium monacense str. B9-21-178 prokMSA_id:13199 Mycobacterium sp prokMSA_id:20317 Mycobacterium sp. MCS prokMSA_id:23135 Mycobacterium sp. JLS prokMSA_id:68650 Mycobacterium sp. KMS prokMSA_id:75651 Mycobacterium sp. DSM 44605 strain DSM 44605 2.30.1.13.1.1.1312 OTU 2 seqs prokMSA_id:13187 Mycobacterium fortuitum prokMSA_id:13256 Mycobacterium fortuitum 2.30.1.13.1.1.1317 OTU 1 seq prokMSA_id:32952 clone HTDD3 2.30.1.13.1.1.1365 OTU 12 seqs prokMSA_id:13116 Mycobacterium immunogen str. MN 3744 prokMSA_id:13119 Mycobacterium n. sp. 'Fuerth 1999' str. 01.22.181 prokMSA_id:19458 Mycobacterium abscessus AF480592 prokMSA_id:29667 Mycobacterium abscessus strain MB849 prokMSA_id:32018 Mycobacterium abscessus strain ITG 98-1292 AJ419970 prokMSA_id:33483 Mycobacterium chelonae prokMSA_id:37469 Mycobacterium chelonae strain MB300 prokMSA_id:42323 Mycobacterium chelonae strain ITG 96-0295 prokMSA_id:42486 Mycobacterium fuerth prokMSA_id:67500 Mycobacterium fuerth strain HXN1000 prokMSA_id:73622 Mycobacterium chelonae strain MB834 prokMSA_id:78097 Mycobacterium abscessus 2.30.1.13.1.1.1435 OTU 9 seqs prokMSA_id:13068 Mycobacterium lentiflavum str. 2186/92 ATCC 51985 prokMSA_id:13091 Mycobacterium sp. str. IWGMT 90143 prokMSA_id:13108 Mycobacterium lentiflavum str. 89-446 ATCC 51988 prokMSA_id:13110 Mycobacterium sp. str. MCRO 18 prokMSA_id:13200 Mycobacterium genavense str. 2289 ATCC 51233 prokMSA_id:13264 Mycobacterium sp. str. 94-92 prokMSA_id:28531 Mycobacterium lentiflavum prokMSA_id:47839 Mycobacterium triplex prokMSA_id:53023 Mycobacterium cf. triplex 'isolate 23' and internal transcri 2.30.1.13.1.1.1491 OTU 2 seqs prokMSA_id:31840 Gordonia-like sp. strain J82 X85238 prokMSA_id:42979 Gordonia-like sp. strain J81 2.30.1.13.1.1.1637 OTU 6 seqs prokMSA_id:13057 Mycobacterium sp. str. PYR-1 prokMSA_id:13096 str. IFP2173 prokMSA_id:13221 Mycobacterium sp. str. PYR-I Fast Growing PAH Degrader prokMSA_id:58279 Mycobacterium austroafricanum isolate VM0456 complete prokMSA_id:70204 Mycobacterium austroafricanum isolate VM0450 complete prokMSA_id:74074 Mycobacterium austroafricanum isolate VM0451 complete 2.30.1.13.1.1.1650 OTU 24 seqs prokMSA_id:13077 Mycobacterium bovis str. vallee prokMSA_id:13086 Mycobacterium celatum str. 3 NCTC 12882 prokMSA_id:13102 Mycobacterium ulcerans prokMSA_id:13104 Mycobacterium celatum ATCC 51130 prokMSA_id:13129 Mycobacterium asiaticum str. N6IH ATCC 25276 prokMSA_id:13173 Mycobacterium tuberculosis str. H37/Rv prokMSA_id:13177 Mycobacterium tuberculosis prokMSA_id:13182 Mycobacterium bovis str. BCG prokMSA_id:13204 Mycobacterium interjectum str. 4185/92 DSM 44064 prokMSA_id:13206 Mycobacterium interjectum str. patient 2 prokMSA_id:13207 Mycobacterium interjectum str. patient 3 prokMSA_id:13208 Mycobacterium sp. str. MCRO 8 prokMSA_id:13209 Mycobacterium sp. str. IWGMT 90100 prokMSA_id:13211 Mycobacterium sp. str. IWGMT 90093 prokMSA_id:13224 Mycobacterium celatum ATCC 51131 prokMSA_id:13226 Mycobacterium IMVS B76676 IMVS B76676 prokMSA_id:18959 Mycobacterium sp. 'Sydney 2453' prokMSA_id:31828 Mycobacterium asiaticum prokMSA_id:36821 Mycobacterium cookii prokMSA_id:52725 Mycobacterium microti prokMSA_id:64868 Mycobacterium avium Myc373 -23S internal transcribed spacer prokMSA_id:66586 Mycobacterium pinnipedii prokMSA_id:70429 Mycobacterium celatum strain MB72 prokMSA_id:77688 Mycobacterium celatum 2.30.1.13.1.1.1681 OTU 2 seqs prokMSA_id:84725 Mycobacterium sp. 1BCD clone 2 prokMSA_id:86670 Mycobacterium sp. 1BCD clone 1 AY227355 2.30.1.13.1.1.1726 OTU 5 seqs prokMSA_id:13085 Mycobacterium terrae str. W-45 ATCC 15755 prokMSA_id:13233 Mycobacterium terrae str. W-45 ATCC 15755 prokMSA_id:26897 Mycobacterium sp. strain MCRO 16 prokMSA_id:49725 Mycobacterium sp. strain MCRO 24 prokMSA_id:69729 Mycobacterium sp. 'graecum DL049' 2.30.1.13.1.1.1781 OTU 6 seqs prokMSA_id:13053 Mycobacterium sp. str. PAH135 prokMSA_id:13073 Mycobacterium sp. str. RJGll.135 Fast Growing Pyrene Degrade prokMSA_id:13075 Mycobacterium sp. str. GP1 prokMSA_id:13174 Mycobacterium aichiense ATCC 27280 prokMSA_id:38064 Mycobacterium rhodesiae strain DSM 44223T prokMSA_id:60765 Mycobacterium rhodesiae strain JS60 2.30.1.13.1.1.1857 OTU 2 seqs prokMSA_id:13069 Mycobacterium hassiacum prokMSA_id:13070 Mycobacterium buckleii 2.30.1.13.1.1.1860 OTU 29 seqs prokMSA_id:13058 Mycobacterium ulcerans prokMSA_id:13059 Mycobacterium ulcerans str. Borstel 10564/70 prokMSA_id:13078 Mycobacterium malmoense str. Mo 816 ATCC 29571 prokMSA_id:13079 Mycobacterium malmoense str. RV423C prokMSA_id:13122 Mycobacterium paraffinicum ATCC 12670 prokMSA_id:13123 Mycobacterium sp. str. IWGMT 90160 prokMSA_id:13124 Mycobacterium sp. str. IWGMT 90236 prokMSA_id:13139 Mycobacterium kansasii str. SN 502 DSM 43224 prokMSA_id:13152 Mycobacterium intracellulare str. SN 424 ATCC 15985 prokMSA_id:13165 Mycobacterium haemophilum prokMSA_id:13167 Mycobacterium bohemicum prokMSA_id:13168 Mycobacterium haemophilum prokMSA_id:13202 Mycobacterium marinum prokMSA_id:13227 Mycobacterium haemophilum prokMSA_id:13230 Mycobacterium gastri str. W-417 ATCC 15754 prokMSA_id:13262 Mycobacterium intermedium prokMSA_id:18950 Mycobacterium lacus prokMSA_id:23068 Mycobacterium sp. M175 prokMSA_id:38629 Mycobacterium scrofulaceum prokMSA_id:50858 Mycobacterium marinum prokMSA_id:52968 Mycobacterium bohemicum and internal transcribed spacer 1 IT prokMSA_id:54160 Mycobacterium bohemicum and internal transcribed spacer 1 IT prokMSA_id:66700 Mycobacterium malmoense ; internal transcribed spacer comple prokMSA_id:69220 Mycobacterium marinum strain ATCC 927 prokMSA_id:69661 Mycobacterium marinum strain cyprinum CC240299 prokMSA_id:69678 Mycobacterium marinum strain eilaticum DL240490 prokMSA_id:72489 Mycobacterium marinum strain hellenicum DL045 prokMSA_id:77825 Mycobacterium kansasii prokMSA_id:79404 Mycobacterium sp. HSC 1852 2.30.1.13.1.1.1885 OTU 11 seqs prokMSA_id:13035 Mycobacterium diernhoferi str. SN 1418 ATCC 19340 prokMSA_id:13184 Mycobacterium CH-1 str. CH-1 prokMSA_id:13185 Mycobacterium sp. str. SRB1151-113 prokMSA_id:20364 Mycobacterium neoaurum prokMSA_id:30438 Mycobacterium neoaurum prokMSA_id:30995 Mycobacterium diernhoferi prokMSA_id:46211 Mycobacterium frederiksbergense strain DSM 44346 prokMSA_id:67483 Mycobacterium sp. HXN1500 strain HXN1500 prokMSA_id:73637 Mycobacterium sp. strain LB501T prokMSA_id:84497 Mycobacterium canariense strain 502329 prokMSA_id:84713 Mycobacterium sp. TH-2003 2.30.1.13.1.1.1888 OTU 2 seqs prokMSA_id:70548 Mycobacterium sp. JS624 prokMSA_id:73627 Mycobacterium brisbanense strain ATCC 49938 2.30.1.13.1.1.2034 OTU 45 seqs prokMSA_id:13032 Mycobacterium chlorophenolicum str. PCP-I DSM 43826 prokMSA_id:13033 Mycobacterium WF2 str. WF2 prokMSA_id:13050 Mycobacterium fortuitum subsp. fortuitum ATCC 6841 prokMSA_id:13066 Mycobacterium parafortuitum str. 311 DSM 43528 prokMSA_id:13114 Mycobacterium farcinogenes ATCC 35753 prokMSA_id:13145 Mycobacterium duvalii str. C-63 ATCC 43910 prokMSA_id:13160 Mycobacterium HE5 str. HE5 prokMSA_id:13164 Mycobacterium chubuense ATCC 27278 prokMSA_id:13183 Mycobacterium alvei str. CR-21 CIP 103464 prokMSA_id:13188 Mycobacterium chlorophenolicum str. PCP-I DSM 43826 prokMSA_id:13190 Mycobacterium chelonae ATCC 14472 prokMSA_id:13192 Mycobacterium IFO16251 IFO 16251 prokMSA_id:13193 Mycobacterium sp. str. DhA-55 prokMSA_id:13249 Mycobacterium smegmatis str. M069 prokMSA_id:13250 Mycobacterium smegmatis str. mc2 155 prokMSA_id:13251 Mycobacterium peregrinum str. Schering 20 ATCC 14467 prokMSA_id:13252 Mycobacterium wolinsky str. 700010 prokMSA_id:13254 Mycobacterium mageritense str. 1336 prokMSA_id:13255 Mycobacterium wolinsky ATCC 700009 prokMSA_id:18390 Mycobacterium septicum prokMSA_id:22210 Mycobacterium chubuense prokMSA_id:22237 Mycobacterium sp. SM7.6.1 prokMSA_id:23238 Mycobacterium septicum strain MB804 prokMSA_id:23960 Mycobacterium phlei prokMSA_id:25000 Mycobacterium flavescens strain ATCC 23008 prokMSA_id:25175 Mycobacterium neworleansense strain ATCC 49404 prokMSA_id:25519 Mycobacterium concordense strain ATCC BAA-329 prokMSA_id:26463 Mycobacterium fortuitum strain MB44 prokMSA_id:28402 Mycobacterium fortuitum strain ATCC 49403 prokMSA_id:28739 Mycobacterium porcinum strain ATCC BAA-328 prokMSA_id:30001 Mycobacterium bonickei strain ATCC 49935 prokMSA_id:39806 Mycobacterium sp. TA5 prokMSA_id:43972 Mycobacterium senegalense prokMSA_id:47184 Mycobacterium fortuitum strain ATCC 49404 prokMSA_id:58772 Mycobacterium sp. CF1 strain CF1 prokMSA_id:65316 Mycobacterium goodii strain X7B prokMSA_id:67481 Mycobacterium septicum strain HXN500 prokMSA_id:67482 Mycobacterium septicum strain HXN1900 prokMSA_id:71981 Mycobacterium porcinum strain ATCC 49939 prokMSA_id:78325 Mycobacterium fortuitum subsp. fortuitum prokMSA_id:78549 Mycobacterium psychrotolerans strain WA101T prokMSA_id:78930 Mycobacterium sp. I5 prokMSA_id:79505 Mycobacterium sp. NB01 prokMSA_id:86344 Mycobacterium sp. DSM 3803 prokMSA_id:86633 Mycobacterium sp. Myc399 ; intergenic spacer complete ; and 2.30.1.13.1.1.2056 OTU 1 seq prokMSA_id:13218 Mycobacterium tilburgii 2.30.1.13.1.2 TSU.PAUROMETABOLA_SUBGROUP 29 seqs 2.30.1.13.1.2.1347 OTU 28 seqs prokMSA_id:13267 Tsukamurella inchonensis str. IMMIB D-771 DSM 44067 prokMSA_id:13269 Tsukamurella paurometabola prokMSA_id:13270 Tsukamurella paurometabola DSM 20162 prokMSA_id:13271 Tsukamurella pulmonis IMMIB D-1321 prokMSA_id:13272 Tsukamurella pulmonis str. KUL50 prokMSA_id:13273 Tsukamurella tyrosinovorans str. D-1437. Y12247 prokMSA_id:13274 Tsukamurella tyrosinovorans str. D-1397. Y12246 prokMSA_id:13275 Tsukamurella tyrosinovorans str. D-1411 prokMSA_id:13276 Tsukamurella tyrosinovorans str. D-1498. Y12245 prokMSA_id:13277 Tsukamurella U5 str. U5 prokMSA_id:13278 Tsukamurella paurometabola str. N663 NCTC 10741 prokMSA_id:13279 Tsukamurella spumae str. M. Goodfellow N1171 strain. Z37150 prokMSA_id:13282 Tsukamurella paurometabola DSM 20162 prokMSA_id:20974 Tsukamurella inchonensis strain ATCC700082 complete AF283281 prokMSA_id:23307 Tsukamurella inchonensis strain ATCC25938 complete AF283282 prokMSA_id:34660 Tsukamurella sp. AM4.1 prokMSA_id:42701 Tsukamurella strandjordae strain ATCCBAA-173 complete prokMSA_id:45072 Tsukamurella paurometabola complete prokMSA_id:47206 Tsukamurella tyrosinosolvens AF475083 prokMSA_id:69803 Tsukamurella columbiensis complete prokMSA_id:83812 Tsukamurella tyrosinosolvens strain DSM 44234 complete prokMSA_id:84348 Tsukamurella spumae strain N1173 complete prokMSA_id:86078 Tsukamurella tyrosinosolvens strain M12400 AY254699 prokMSA_id:86153 Tsukamurella tyrosinosolvens strain M95570 AY253916 prokMSA_id:86173 Tsukamurella spumae strain N1176 complete prokMSA_id:86184 Tsukamurella tyrosinosolvens AY259830 prokMSA_id:86558 Tsukamurella pulmonis strain M67570 prokMSA_id:91598 Tsukamurella pseudospumae AY333425 2.30.1.13.1.2.1903 OTU 1 seq prokMSA_id:78033 actinobacterium clone:APe2_64 2.30.1.13.2 CORYNEBACTERIUM_GROUP 311 seqs 2.30.1.13.2.1 GRD.AMARAE_SUBGROUP 40 seqs 2.30.1.13.2.1.1116 OTU 6 seqs prokMSA_id:13283 Gordonia terrae prokMSA_id:13284 Gordonia terrae str. MZ 230973 prokMSA_id:13285 Gordonia sp prokMSA_id:13286 Gordonia terrae CDC W5151 prokMSA_id:13311 Gordonia terrae ATCC 25594 prokMSA_id:68728 Glacial ice SIA1K-2A1 2.30.1.13.2.1.1184 OTU 22 seqs prokMSA_id:13287 str. SR 259 prokMSA_id:13291 Gordonia rubropertincta ATCC 25593 prokMSA_id:13292 Gordonia IBT2679-051 str. IBT2679-051 prokMSA_id:13293 Gordonia 213E str. 213E prokMSA_id:13294 Gordonia 213F str. 213F prokMSA_id:13312 Gordonia rubropertincta prokMSA_id:13313 Gordonia RR str. RR prokMSA_id:13324 Gordonia bronchialis prokMSA_id:13325 Gordonia rhizosphera IFO 16247 prokMSA_id:13326 Gordonia bronchialis CIP 1780.88 prokMSA_id:13329 Gordonia bronchialis prokMSA_id:16517 Gordonia terrae strain COE-O1 prokMSA_id:17608 Gordonia westfalica strain Kb1/Kb2 prokMSA_id:25110 Gordonia nitida prokMSA_id:27224 Gordonia alkalivorans prokMSA_id:38169 Gordonia namibiensis NAM-BN063B AF380931 prokMSA_id:41303 Gordonia namibiensis NAM-BN063A AF380930 prokMSA_id:47244 Gordonia alkalivorans prokMSA_id:62869 Gordonia terrae AB111113 prokMSA_id:69925 Gordonia rhizophera strain IFO16068T prokMSA_id:88069 Gordonia rubripertinctus strain AGP1-3 AY277554 prokMSA_id:96137 Gordonia rubripertinctus strain NCIMB 12566 AJ586615 2.30.1.13.2.1.1191 OTU 6 seqs prokMSA_id:13296 Gordonia amarae prokMSA_id:13297 Gordonia amarae. X82243 prokMSA_id:13299 Gordonia amarae str. SE-102 ATCC 27809 prokMSA_id:13300 Gordonia amarae str. ASF3 prokMSA_id:13307 Gordonia amarae str. N667 ATCC 27808 prokMSA_id:13310 Gordonia amarae str. N667 ATCC 27808 2.30.1.13.2.1.1209 OTU 2 seqs prokMSA_id:32142 Gordonia sp. strain J4 prokMSA_id:48423 Gordonia sp. strain J59 X85243 2.30.1.13.2.1.1518 OTU 1 seq prokMSA_id:36832 Gordonia spumae strain T4 2.30.1.13.2.1.1567 OTU 1 seq prokMSA_id:64242 PSRB3 2.30.1.13.2.1.1645 OTU 1 seq prokMSA_id:13302 Gordonia hirsuta str. K718a DSM 44140 2.30.1.13.2.1.1891 OTU 1 seq prokMSA_id:71243 Gordonia sinesedis 2.30.1.13.2.3 GRD.BRONCHIALIS_SUBGROUP 6 seqs 2.30.1.13.2.3.1545 OTU 1 seq prokMSA_id:64754 Gordonia sp. FWA92 2.30.1.13.2.3.1654 OTU 5 seqs prokMSA_id:13327 Gordonia polyisoprenivorans DSM 44302 prokMSA_id:17721 Gordonia polyisoprenivorans strain VH2 prokMSA_id:25722 Gordonia polyisoprenivorans strain:P8219 prokMSA_id:38457 Gordonia polyisoprenivorans prokMSA_id:73085 Gordonia sp. MN 110a isolate MN 110a 2.30.1.13.2.4 SK.PINIFORMIS_SUBGROUP 2 seqs 2.30.1.13.2.4.2022 OTU 2 seqs prokMSA_id:13330 Skermania piniformis str. UQM3063 IFO 15059 prokMSA_id:46901 Skermania piniformis strain DSM 43998T 2.30.1.13.2.5 WLM.MURALIS_SUBGROUP 3 seqs 2.30.1.13.2.5.1137 OTU 1 seq prokMSA_id:13333 Williamsia maris strain:SJS0289-JS1 2.30.1.13.2.5.1136 OTU 1 seq prokMSA_id:13332 Williamsia muralis str. MA140/96 2.30.1.13.2.5.1526 OTU 1 seq prokMSA_id:41242 Chibacore 1500 2.30.1.13.2.6 DZ.MARIS_SUBGROUP 15 seqs 2.30.1.13.2.6.1143 OTU 1 seq prokMSA_id:13338 Rhodococcus sp. str. AC-43 2.30.1.13.2.6.1662 OTU 1 seq prokMSA_id:34366 Dietzia psychroalcalophilus 2.30.1.13.2.6.1872 OTU 13 seqs prokMSA_id:13334 Dietzia maris str. IMV 195; AUCNM-A-593; VKM Ac-593 DSM 4367 prokMSA_id:13335 Dietzia 147 str. 147 prokMSA_id:13337 unnamed organism prokMSA_id:13339 Dietzia JTS6455-250 str. JTS6455-250 prokMSA_id:13341 Dietzia maris DSM 46102. X79291 prokMSA_id:13342 Dietzia JTS6048-306 str. JTS6048-306 prokMSA_id:13344 Dietzia maris str. IMV 195; AUCNM-A-593; VKM Ac-593 ATCC 350 prokMSA_id:35177 D.maris prokMSA_id:77352 Dietzia maris strain SAFR-020 prokMSA_id:78736 Dietzia sp. 2216.35.9 AB094465 prokMSA_id:81642 Dietzia sp. CR1-3 prokMSA_id:89054 Dietzia maris strain RE20 AF537361 prokMSA_id:93197 Dietzia maris strain 263 AY360062 2.30.1.13.2.7 COR.XEROSIS_SUBGROUP 16 seqs 2.30.1.13.2.7.1517 OTU 16 seqs prokMSA_id:13347 Corynebacterium xerosis DSM 20743 prokMSA_id:13348 Corynebacterium xerosis str. 71376 prokMSA_id:13349 Corynebacterium xerosis str. K132 prokMSA_id:13350 Corynebacterium xerosis ATCC 373 prokMSA_id:13352 Corynebacterium asperum CIP 52.13 prokMSA_id:13353 Corynebacterium amycolatum NCFB 2768 prokMSA_id:13354 Corynebacterium Corynebacterium sp. MTcory13R. AF115939 prokMSA_id:13355 Corynebacterium amycolatum CIP 103452 prokMSA_id:13471 Corynebacterium striatum NCTC 764 prokMSA_id:37739 Corynebacterium freneyi strain 20395347 prokMSA_id:45813 Corynebacterium striatum prokMSA_id:73485 Corynebacterium freneyi strain 20695110 AJ292762 prokMSA_id:74894 Rhodococcus sp prokMSA_id:82042 Corynebacterium freneyi strain 116594 prokMSA_id:83313 Corynebacterium sp. 'Smarlab BioMol-2301292' prokMSA_id:86061 Corynebacterium halophilum 2.30.1.13.2.8 COR.GLUTAMICUM_SUBGROUP 12 seqs 2.30.1.13.2.8.1196 OTU 2 seqs prokMSA_id:13363 Corynebacterium callunae NCIMB 10338 prokMSA_id:13365 Corynebacterium callunae CCUG 28793 2.30.1.13.2.8.1237 OTU 9 seqs prokMSA_id:13364 Corynebacterium sp. str. EL-180 prokMSA_id:18481 Corynebacterium efficiens strain:YS-52 AB055964 prokMSA_id:22730 Corynebacterium efficiens strain:YS-314 prokMSA_id:55922 Corynebacterium efficiens YS-314 complete genome NC_004369 prokMSA_id:69308 Corynebacterium efficiens YS-314 complete genome section 10/ prokMSA_id:69327 Corynebacterium efficiens YS-314 complete genome section 9/1 prokMSA_id:70786 Corynebacterium efficiens YS-314 complete genome section 6/1 prokMSA_id:71077 Corynebacterium efficiens strain:YS-155 prokMSA_id:72099 Corynebacterium efficiens YS-314 complete genome section 4/1 2.30.1.13.2.8.1273 OTU 1 seq prokMSA_id:13361 ATCC 13869 2.30.1.13.2.9 COR.UREALYTICUM_SUBGROUP 65 seqs 2.30.1.13.2.9.1292 OTU 1 seq prokMSA_id:13366 Corynebacterium urealyticum ATCC 43042 2.30.1.13.2.9.1332 OTU 1 seq prokMSA_id:13370 Corynebacterium terpenotabidum IFO 14764 2.30.1.13.2.9.1482 OTU 4 seqs prokMSA_id:13386 Corynebacterium variabilis str. AC 256 DSM 20132 prokMSA_id:13387 Corynebacterium variabilis str. AC 256 DSM 20536 prokMSA_id:13388 LMG 3820 prokMSA_id:43991 Corynebacterium sp. IC10 2.30.1.13.2.9.1492 OTU 11 seqs prokMSA_id:13369 Corynebacterium falsenii str. CCUG 33651 DSM 44353 prokMSA_id:13377 Corynebacterium Corynebacterium sp. MTcory14R prokMSA_id:13380 Corynebacterium jeikeium CIP 103337 prokMSA_id:13419 Corynebacterium pseudogenitalium NCTC 11860. X81872 prokMSA_id:13447 Corynebacterium afermentans str. DMMZ 545 DMMZ 525?. X81874 prokMSA_id:13453 Corynebacterium sp. str. taxon 1 CDC G4330. X81905 prokMSA_id:61783 Corynebacterium appendicis strain DSM 44531T AJ314919 prokMSA_id:64184 Corynebacterium sp. 'Triatoma infestans' prokMSA_id:71101 Corynebacterium falsenii isolate 97-0205 prokMSA_id:73590 Corynebacterium sp. oral strain A43SC AF287754 prokMSA_id:86131 Corynebacterium sp. 2002-2300500 AY244775 2.30.1.13.2.9.1608 OTU 1 seq prokMSA_id:25532 Corynebacterium testudinoris strain CCUG 41823T 2.30.1.13.2.9.1763 OTU 1 seq prokMSA_id:13374 Corynebacterium "genitalium" ATCC 33031 2.30.1.13.2.9.1767 OTU 1 seq prokMSA_id:13375 Corynebacterium jeikeium ATCC 43216 2.30.1.13.2.9.1776 OTU 1 seq prokMSA_id:13378 Corynebacterium "genitalium" ATCC 33033 2.30.1.13.2.9.1783 OTU 1 seq prokMSA_id:28246 Corynebacterium bovis strain 101 2.30.1.13.2.9.1820 OTU 2 seqs prokMSA_id:13373 Corynebacterium jeikeium ATCC 43734 prokMSA_id:13379 Corynebacterium jeikeium ATCC 43217 2.30.1.13.2.9.1826 OTU 2 seqs prokMSA_id:13390 Corynebacterium kroppenstedtii CCUG 35717 prokMSA_id:69669 Corynebacterium kroppenstedtii isolate 00-0244 2.30.1.13.2.9.2035 OTU 2 seqs prokMSA_id:13371 Corynebacterium auriscanis CCUG 39784 prokMSA_id:19141 Corynebacterium auriscarnis strain CCUG 39783 2.30.1.13.2.9.2059 OTU 37 seqs prokMSA_id:13381 Corynebacterium bovis NCTC 3224 prokMSA_id:13382 Corynebacterium bovis ATCC 7715 prokMSA_id:13383 Corynebacterium bovis NCTC 3224 prokMSA_id:13384 Corynebacterium bovis str. 5232 and 4428/4 prokMSA_id:17694 Corynebacterium bovis strain 238 prokMSA_id:19039 Corynebacterium bovis strain 172 prokMSA_id:21189 Corynebacterium bovis strain 196 prokMSA_id:21243 Corynebacterium bovis strain 114 prokMSA_id:23835 Corynebacterium bovis strain 234 prokMSA_id:23997 Corynebacterium bovis strain 32 prokMSA_id:24259 Corynebacterium bovis strain 62 prokMSA_id:26616 Corynebacterium bovis strain 41 prokMSA_id:27527 Corynebacterium bovis strain 51 prokMSA_id:30812 Corynebacterium bovis strain 38 prokMSA_id:31503 Corynebacterium bovis strain 143 prokMSA_id:33060 Corynebacterium bovis strain 115 prokMSA_id:34732 Corynebacterium bovis strain 54 prokMSA_id:34906 Corynebacterium bovis strain 68 prokMSA_id:35805 Corynebacterium bovis strain 89 prokMSA_id:35923 Corynebacterium bovis strain 96 prokMSA_id:37219 Corynebacterium bovis strain 150 prokMSA_id:37493 Corynebacterium bovis strain 33 prokMSA_id:37725 Corynebacterium bovis strain 140 prokMSA_id:37776 Corynebacterium bovis strain 139 prokMSA_id:38365 Corynebacterium bovis strain 67 prokMSA_id:43368 Corynebacterium bovis strain 50 prokMSA_id:43566 Corynebacterium bovis strain 39 prokMSA_id:44972 Corynebacterium bovis strain 136 prokMSA_id:45755 Corynebacterium bovis strain 184 prokMSA_id:45770 Corynebacterium bovis strain 231 prokMSA_id:46369 Corynebacterium bovis strain 225 prokMSA_id:47588 Corynebacterium bovis strain 55 prokMSA_id:48907 Corynebacterium bovis strain 185 prokMSA_id:51875 Corynebacterium bovis strain 236 prokMSA_id:52118 Corynebacterium bovis strain 233 prokMSA_id:74552 Corynebacterium bovis strain 34 prokMSA_id:75132 Corynebacterium bovis 2.30.1.13.2.10 COR.PSEUDOTUBERCULOSIS_SUBGROUP 32 seqs 2.30.1.13.2.10.1131 OTU 1 seq prokMSA_id:13405 Corynebacterium vitarumen NCTC 20294 2.30.1.13.2.10.1327 OTU 3 seqs prokMSA_id:13395 Corynebacterium diphtheriae NCTC 11397 prokMSA_id:13398 Corynebacterium diphtheriae CIP 100721 prokMSA_id:26734 92 from Patent EP0745691 2.30.1.13.2.10.1455 OTU 3 seqs prokMSA_id:13396 Corynebacterium durum str. IBS G15036 IBS G15036 prokMSA_id:58295 Corynebacterium durum prokMSA_id:71635 Corynebacterium durum isolate 99-0047 2.30.1.13.2.10.1464 OTU 2 seqs prokMSA_id:13391 Corynebacterium kutscheri CIP 103423 prokMSA_id:13393 Corynebacterium kutscheri CIP 103423 2.30.1.13.2.10.1500 OTU 2 seqs prokMSA_id:13418 Corynebacterium argentoratense str. IBS B10697 CIP 104296 prokMSA_id:69384 Corynebacterium argentoratense isolate 98-0075 2.30.1.13.2.10.1575 OTU 2 seqs prokMSA_id:13399 Corynebacterium matruchotii DSM 20635 prokMSA_id:43893 Corynebacterium sp. oral clone AK153 2.30.1.13.2.10.1668 OTU 6 seqs prokMSA_id:13392 Corynebacterium pseudotuberculosis CIP 52.97 prokMSA_id:13394 Corynebacterium pseudotuberculosis CIP 102968 prokMSA_id:13397 Corynebacterium ulcerans CCUG 2708 prokMSA_id:13400 Corynebacterium ulcerans NCTC 7910 prokMSA_id:13402 Corynebacterium ulcerans CIP 54.53 prokMSA_id:13414 Corynebacterium pseudotuberculosis NCTC 3450 2.30.1.13.2.10.1837 OTU 11 seqs prokMSA_id:13401 Corynebacterium renale str. HR58 prokMSA_id:13404 Corynebacterium renale str. HR59 prokMSA_id:13410 Corynebacterium renale str. Charita-a CIP 103421 prokMSA_id:13412 Corynebacterium renale str. Charita-a ATCC 19412 . M29553 prokMSA_id:13413 Corynebacterium renale str. Charita-a CIP 103421 prokMSA_id:13415 Corynebacterium renale str. HR57 prokMSA_id:13416 Corynebacterium renale str. HR56 prokMSA_id:69759 Corynebacterium renale strain:HR58 prokMSA_id:70082 Corynebacterium renale strain:HR59 prokMSA_id:71449 Corynebacterium renale strain:HR56 prokMSA_id:72642 Corynebacterium renale strain:HR57 2.30.1.13.2.10.1922 OTU 2 seqs prokMSA_id:18932 Corynebacterium sp. ATCC43833 prokMSA_id:33029 Corynebacterium sp. ATCC43833 2.30.1.13.2.11 COR.AFERMENTANS_SUBGROUP 48 seqs 2.30.1.13.2.11.1089 OTU 5 seqs prokMSA_id:13423 Corynebacterium mucifaciens DMMZ 2278 prokMSA_id:13431 Corynebacterium Corynebacterium sp. MTcory3P prokMSA_id:13436 Corynebacterium Corynebacterium sp. MTcory19R prokMSA_id:72264 Corynebacterium mucifaciens isolate 01-0118 prokMSA_id:74212 Corynebacterium mucifaciens isolate 87-0436 2.30.1.13.2.11.1148 OTU 1 seq prokMSA_id:13442 Corynebacterium sp. str. 1944 2.30.1.13.2.11.1162 OTU 6 seqs prokMSA_id:13454 Corynebacterium sundsvallense prokMSA_id:13455 Corynebacterium Corynebacterium sp. MTcory17R prokMSA_id:13456 Corynebacterium thomssenii prokMSA_id:69927 Corynebacterium sundsvallense isolate 93-0639 prokMSA_id:71061 Corynebacterium sundsvallense isolate 99-0121 prokMSA_id:72293 Corynebacterium thomssenii isolate 97-0130 2.30.1.13.2.11.1179 OTU 1 seq prokMSA_id:13449 Corynebacterium "genitalium" ATCC 33034 2.30.1.13.2.11.1205 OTU 1 seq prokMSA_id:78722 actinobacterium clone EarCan097 2.30.1.13.2.11.1215 OTU 1 seq prokMSA_id:13451 Corynebacterium "genitalium" ATCC 33030 2.30.1.13.2.11.1374 OTU 4 seqs prokMSA_id:13432 Corynebacterium Corynebacterium sp. MTcory5K prokMSA_id:13434 Corynebacterium Corynebacterium sp. MTcory21R prokMSA_id:13435 Corynebacterium Corynebacterium sp. MTcory24T prokMSA_id:82663 Corynebacterium sp. 2002-79006 2.30.1.13.2.11.1443 OTU 1 seq prokMSA_id:73330 Corynebacterium coyleae isolate 97-0171 2.30.1.13.2.11.1558 OTU 1 seq prokMSA_id:50265 Corynebacterium sp. 61722 2.30.1.13.2.11.1590 OTU 3 seqs prokMSA_id:13421 Corynebacterium cystitidis CIP 103424 prokMSA_id:13428 Corynebacterium cystitidis NCTC 11863 prokMSA_id:13440 Corynebacterium cystitidis ATCC 29593 2.30.1.13.2.11.1642 OTU 1 seq prokMSA_id:13420 Turicella otitidis str. 234/92 DSM 8821 2.30.1.13.2.11.1656 OTU 1 seq prokMSA_id:13424 Corynebacterium "genitalium" ATCC 33032 2.30.1.13.2.11.1660 OTU 1 seq prokMSA_id:13427 Corynebacterium Corynebacterium sp. MTcory11W 2.30.1.13.2.11.1698 OTU 3 seqs prokMSA_id:13422 Corynebacterium afermentans subsp. liphophilum CIP 103500 prokMSA_id:13457 Corynebacterium afermentans subsp. afermentans CIP 103499 prokMSA_id:71216 Corynebacterium afermentans 2.30.1.13.2.11.1723 OTU 1 seq prokMSA_id:13439 Corynebacterium sp. str. taxon 2 CDC G5911 2.30.1.13.2.11.1729 OTU 2 seqs prokMSA_id:13445 Corynebacterium sp. str. 2023 prokMSA_id:69614 Corynebacterium imitans isolate 01-0063 2.30.1.13.2.11.1737 OTU 1 seq prokMSA_id:13437 Corynebacterium camporealensis str. CRS-51 CECT 4897 2.30.1.13.2.11.1785 OTU 1 seq prokMSA_id:25821 Corynebacterium capitovis strain CCUG 39779 strain 2.30.1.13.2.11.1838 OTU 2 seqs prokMSA_id:13448 Corynebacterium riegelii prokMSA_id:69866 Corynebacterium riegelii isolate 99-0185 2.30.1.13.2.11.1840 OTU 1 seq prokMSA_id:38871 Corynebacterium sp. MT2R 2.30.1.13.2.11.1930 OTU 2 seqs prokMSA_id:13441 Corynebacterium mycetoides NCTC 9864 prokMSA_id:13444 Corynebacterium mycetoides 2.30.1.13.2.11.1995 OTU 1 seq prokMSA_id:78429 clone EarCan096 2.30.1.13.2.11.2006 OTU 7 seqs prokMSA_id:13425 Corynebacterium glucuronolyticum str. GF 838 DSM 44120 prokMSA_id:23811 Corynebacterium glucuronolyticum strain COR 232 prokMSA_id:27538 Corynebacterium sp. MT25Y AF115950 prokMSA_id:31488 Corynebacterium sp. MT30Y prokMSA_id:38303 Corynebacterium glucuronolyticum strain COR 252 prokMSA_id:73162 Corynebacterium glucuronolyticum isolate 98-0098 prokMSA_id:74005 Corynebacterium glucuronolyticum isolate 98-0013 2.30.1.13.2.12 COR.FLAVESCENS_SUBGROUP 11 seqs 2.30.1.13.2.12.1232 OTU 1 seq prokMSA_id:13458 Corynebacterium ammoniagenes CIP 101283 2.30.1.13.2.12.1247 OTU 1 seq prokMSA_id:13459 Corynebacterium ammoniagenes CIP 101283 2.30.1.13.2.12.1272 OTU 1 seq prokMSA_id:13460 Corynebacterium sp. str. EL-68 2.30.1.13.2.12.1281 OTU 1 seq prokMSA_id:13465 Corynebacterium sp. str. QKT1393-078 2.30.1.13.2.12.1300 OTU 1 seq prokMSA_id:13468 Corynebacterium pilosum str. 46 Hara ATCC 29592 2.30.1.13.2.12.1303 OTU 1 seq prokMSA_id:13469 Corynebacterium pilosum str. 46 Hara ATCC 29592 2.30.1.13.2.12.1387 OTU 1 seq prokMSA_id:50892 Corynebacterium casei LMG S-19264 2.30.1.13.2.12.1708 OTU 2 seqs prokMSA_id:13463 Corynebacterium flavescens NCDO 1320 prokMSA_id:13466 Corynebacterium flavescens CIP 69.5 2.30.1.13.2.12.1815 OTU 1 seq prokMSA_id:13467 Corynebacterium pilosum str. 46 Hara NCTC 11862 2.30.1.13.2.12.2038 OTU 1 seq prokMSA_id:27896 Corynebacterium sp. B55443 2.30.1.13.2.13 COR.MINUTISSIMUM_SUBGROUP 16 seqs 2.30.1.13.2.13.1357 OTU 1 seq prokMSA_id:13478 Corynebacterium 'CDC B8037' CDC B8037 2.30.1.13.2.13.1428 OTU 12 seqs prokMSA_id:13472 Corynebacterium sp. str. UCL301 prokMSA_id:13476 Corynebacterium singulare str. B52218 IBS B52218 prokMSA_id:13481 Corynebacterium Corynebacterium sp. MTcory1P prokMSA_id:13482 Corynebacterium Corynebacterium sp. MTcory16R prokMSA_id:30005 Corynebacterium nigricans sp. nov prokMSA_id:57711 Corynebacterium aurimucosum strain IMMIB R-222 prokMSA_id:57712 Corynebacterium aurimucosum strain IMMIB D-1488 prokMSA_id:69059 Corynebacterium nigricans isolate 92-0360 prokMSA_id:70353 Corynebacterium simulans isolate 81-0613 prokMSA_id:73498 Corynebacterium simulans isolate 00-0186 prokMSA_id:86381 Corynebacterium nigricans prokMSA_id:88549 Corynebacterium nigricans isolate 91-0032 AY321294 2.30.1.13.2.13.1483 OTU 2 seqs prokMSA_id:13477 Corynebacterium minutissimum str. clone 1 NCTC 10288 prokMSA_id:13479 Corynebacterium minutissimum str. clone 1 NCTC 10288 2.30.1.13.2.13.1844 OTU 1 seq prokMSA_id:37997 Corynebacterium felinum strain CCUG 39943 2.30.1.13.2.14 COR.MACGINLEYI_SUBGROUP 12 seqs 2.30.1.13.2.14.1192 OTU 11 seqs prokMSA_id:13483 Corynebacterium macginleyi str. JCL-2 CIP 104099 prokMSA_id:13484 Corynebacterium accolens CCUG 28779 prokMSA_id:13486 Corynebacterium "fastidiosum" CIP 103808 prokMSA_id:13487 Corynebacterium "segmentosum" NCTC 934 prokMSA_id:25485 Corynebacterium sp. MT4P AF115928 prokMSA_id:43077 A3-K1 clone A3-K1 AJ405049 prokMSA_id:67684 Corynebacterium macginleyi prokMSA_id:83558 Corynebacterium fastidiosum strain CIP103808 prokMSA_id:83750 Corynebacterium accolens strain CIP104783T prokMSA_id:83943 Corynebacterium segmentosum strain CIP107068 prokMSA_id:84689 Corynebacterium macginleyi strain CIP104099T 2.30.1.13.2.14.1420 OTU 1 seq prokMSA_id:13485 Corynebacterium sp. str. MC8 2.30.1.13.2.15 COR.TUBERCULOSTEARICUM_SUBGROUP 22 seqs 2.30.1.13.2.15.1493 OTU 21 seqs prokMSA_id:13488 Corynebacterium "tuberculostearicum" ATCC 35692 prokMSA_id:13490 Corynebacterium Corynebacterium sp. MTcory2P prokMSA_id:13491 Corynebacterium Corynebacterium sp. MTcory20R prokMSA_id:13492 Corynebacterium sp. CDC G5840 prokMSA_id:13494 clone I-109 prokMSA_id:19533 Corynebacterium sp. IrT-R5M2-141 AJ291838 prokMSA_id:22102 Corynebacterium sp. 61720 prokMSA_id:23875 Corynebacterium sp. MT9M86 AF115953 prokMSA_id:82489 Corynebacterium sp. CIP102346 prokMSA_id:82584 Corynebacterium sp. CIP107067 prokMSA_id:82897 Corynebacterium sp. CIP102645 AJ438042 prokMSA_id:83125 Corynebacterium sp. CIP102857 AJ438041 prokMSA_id:83910 Corynebacterium sp. CIP102124 AJ438047 prokMSA_id:84297 Corynebacterium sp. CIP101775 AJ438049 prokMSA_id:84459 Corynebacterium pseudogenitalium strain CIP106714 prokMSA_id:84542 Corynebacterium sp. CIP102211 AJ438046 prokMSA_id:84608 Corynebacterium sp. CIP102590 AJ438044 prokMSA_id:85185 Corynebacterium sp. CIP102076 prokMSA_id:85890 Corynebacterium sp. CIP102622 prokMSA_id:86463 Corynebacterium sp. CIP107291 AJ438050 prokMSA_id:89305 clone O-F-5 AF443574 2.30.1.13.2.15.1884 OTU 1 seq prokMSA_id:13493 Corynebacterium pseudogenitalium ATCC 33035 2.30.1.13.2.16 COR.PSEUDODIPHTHERITICUM_SUBGROUP 11 seqs 2.30.1.13.2.16.1338 OTU 7 seqs prokMSA_id:13495 Corynebacterium propinquum CIP 103792 prokMSA_id:13496 Corynebacterium propinquum CIP 103792 prokMSA_id:13497 Corynebacterium pseudodiphtheriticum NCTC 11136 prokMSA_id:13498 Corynebacterium pseudodiphtheriticum CIP 103420 prokMSA_id:82696 Corynebacterium pseudodiphthericum strain CIP103420T prokMSA_id:84553 Rothia mucilaginosa AY244786 prokMSA_id:85717 Corynebacterium propinquum AY244785 2.30.1.13.2.16.1803 OTU 4 seqs prokMSA_id:13499 Corynebacterium confusum DMMZ 2439 . Y15886 prokMSA_id:13500 Corynebacterium confusum DMMZ 3259 prokMSA_id:60234 Corynebacterium spheniscorum strain CCUG 45512T prokMSA_id:73184 Corynebacterium confusum isolate 99-0145 2.30.1.13.3 RCO.RHODOCHROUS_GROUP 38 seqs 2.30.1.13.3.1100 OTU 1 seq prokMSA_id:34259 Banisveld landfill BVC83 2.30.1.13.3.1142 OTU 1 seq prokMSA_id:24660 Rhodococcus sp. IM-43760 2.30.1.13.3.1176 OTU 1 seq prokMSA_id:13505 clone TM177 2.30.1.13.3.1350 OTU 10 seqs prokMSA_id:13503 Rhodococcus ruber DSM 43338 prokMSA_id:13504 Rhodococcus YH1 str. YH1 prokMSA_id:32848 Rhodococcus ruber strain AS4.1187 prokMSA_id:60987 Rhodococcus sp. An prokMSA_id:63346 Rhodococcus ruber strain AS 4.1038 AY114177 prokMSA_id:64675 Rhodococcus sp. USA-AN012 prokMSA_id:64753 Rhodococcus sp. E33 AY114109 prokMSA_id:67231 Rhodococcus aetherovorans strain Bc663 prokMSA_id:67233 Rhodococcus aetherovorans strain 10bc312 prokMSA_id:85556 Rhodococcus ruber M2 AY247275 2.30.1.13.3.1360 OTU 1 seq prokMSA_id:63301 clone RCP2-103 2.30.1.13.3.1412 OTU 2 seqs prokMSA_id:39131 FukuS5 prokMSA_id:98880 actinobacterium clone SW3 AJ575548 2.30.1.13.3.1861 OTU 1 seq prokMSA_id:20961 Rhodococcus rhodochrous 2.30.1.13.3.1940 OTU 21 seqs prokMSA_id:13508 Rhodococcus sp. str. IBT2679-024. AB010902 prokMSA_id:13512 Rhodococcus rhodochrous ATCC 271 . X81921 prokMSA_id:13513 Rhodococcus rhodochrous DSM 43274 prokMSA_id:13514 Rhodococcus sp. str. LC1 prokMSA_id:13516 Rhodococcus rhodochrous str. 372 CIP 1759.88 prokMSA_id:13517 Rhodococcus rhodochrous str. 372 DSM 43241 prokMSA_id:13527 Rhodococcus sp. str. RHA4. U16317 prokMSA_id:13546 Rhodococcus IFO16253 IFO 16253. AB023374 prokMSA_id:13590 Rhodococcus equi ATCC 33701. D37876 prokMSA_id:23734 Rhodococcus pyridinovorans AF173005 prokMSA_id:43203 Rhodococcus sp. D87092 prokMSA_id:54731 Rhodococcus pyridinivorans strain R04 AF459741 prokMSA_id:55435 Rhodococcus sp. PNAN 5 prokMSA_id:55547 Rhodococcus sp. PA AJ457068 prokMSA_id:64670 Rhodococcus sp. ARG-BN062 prokMSA_id:65225 Rhodococcus rhodnii specimen-voucher CNCM 2206 prokMSA_id:70533 Rhodococcus equi D37876 prokMSA_id:82133 Rhodococcus gordoniae strain W4937 prokMSA_id:82199 Rhodococcus gordoniae strain MTCC 1534 prokMSA_id:83971 Rhodococcus sp. AN-22 prokMSA_id:87677 Rhodococcus sp. T104 AY286493 2.30.1.13.4 RCO.RHODNII_GROUP 4 seqs 2.30.1.13.4.1203 OTU 4 seqs prokMSA_id:13519 Rhodococcus rhodnii ATCC 35071 prokMSA_id:13520 Rhodococcus rhodnii str. N 443 DSM 43337 prokMSA_id:13521 Rhodococcus rhodnii str. N 445 DSM 43336 prokMSA_id:13522 Rhodococcus rhodnii str. N 444 DSM 43959 2.30.1.13.5 NOC.CORYNEBACTEROIDES_GROUP 6 seqs 2.30.1.13.5.1746 OTU 6 seqs prokMSA_id:13523 Nocardia corynebacteroides DSM 20151 prokMSA_id:13524 Rhodococcus corynebacteroides CIP 104291. Y07813 prokMSA_id:13525 Rhodococcus corynebacteroides CIP 104294. Y07849 prokMSA_id:32826 Actinobacterium NZ2 prokMSA_id:75616 Nocardia corynebacterioides strain QBTo AY157677 prokMSA_id:81710 Nocardia corynebacterioides strain DSM 20151 complete 2.30.1.13.6 RHODOCOCCUS_GROUP 195 seqs 2.30.1.13.6.1 RCO.OPACUS_SUBGROUP 8 seqs 2.30.1.13.6.1.1788 OTU 1 seq prokMSA_id:13541 Rhodococcus sp 2.30.1.13.6.1.1809 OTU 1 seq prokMSA_id:37109 Rhodococcus sp. DK17 2.30.1.13.6.1.1970 OTU 6 seqs prokMSA_id:44836 Dietzia sp. strain CIP104293 prokMSA_id:65416 clone 799 prokMSA_id:65421 clone 61 prokMSA_id:65423 clone 53 prokMSA_id:65438 clone 10 prokMSA_id:68351 Dietzia sp. E9_2 E1 oral isolate AF481211 2.30.1.13.6.2 RCO.FASCIANS_SUBGROUP 32 seqs 2.30.1.13.6.2.1999 OTU 32 seqs prokMSA_id:13577 Rhodococcus fascians prokMSA_id:13578 Rhodococcus fascians ATCC 35014. X81932 prokMSA_id:13580 Rhodococcus fascians. X79186 prokMSA_id:13581 Rhodococcus fascians str. D188 prokMSA_id:13582 Rhodococcus 5/1 str. 5/1 prokMSA_id:13583 Rhodococcus 5/14 str. 5/14 prokMSA_id:13584 Rhodococcus sp. str. SGB1168-116. AB010907 prokMSA_id:13585 Rhodococcus sp. str. SGB1168-118. AB010908 prokMSA_id:13586 Rhodococcus sp. str. SRB1948-Z40 prokMSA_id:13587 Rhodococcus fascians ATCC 12974 prokMSA_id:18740 Rhodococcus sp. S9 prokMSA_id:35057 Rhodococcus fascians prokMSA_id:37131 Rhodococcus fascians isolate KM6 AJ011329 prokMSA_id:42627 Rhodococcus sp. UFZ-B520 prokMSA_id:57898 actinobacterium isolate D62 AF544369 prokMSA_id:57900 actinobacterium isolate D57 AF544366 prokMSA_id:57909 actinobacterium isolate D41 AF544355 prokMSA_id:57917 actinobacterium isolate D13 AF544345 prokMSA_id:57923 actinobacterium isolate M41 AF544338 prokMSA_id:59542 CAGY6 strain CAGY6 prokMSA_id:61955 Rhodococcus sp. V4.ME.27 prokMSA_id:65222 Rhodococcus sp. YK9 AB070471 prokMSA_id:65243 Rhodococcus sp. YK2 prokMSA_id:70020 Antarctic seawater R7241 prokMSA_id:70233 strain R7212 prokMSA_id:70795 Polar sea R7704 prokMSA_id:73382 Arctic seawater R7851 prokMSA_id:79369 Rhodococcus sp. MBIC01430 AB088667 prokMSA_id:80384 Rhodococcus sp. P_wp0223 prokMSA_id:80394 Rhodococcus sp. P_wp0233 prokMSA_id:89578 Rhodococcus luteus isolate 7Y AJ576249 prokMSA_id:96788 Rhodococcus sp. NAB16 AY395020 2.30.1.13.6.3 RCO.EQUI_SUBGROUP 5 seqs 2.30.1.13.6.3.1163 OTU 5 seqs prokMSA_id:13588 Corynebacterium hoagii ATCC 7005 prokMSA_id:13593 Rhodococcus equi DSM 20307 prokMSA_id:13594 Rhodococcus equi str. 545 DSM 43199 prokMSA_id:49374 Rhodococcus equi strain CUB1156 prokMSA_id:83293 Rhodococcus equi strain DSM 20307T complete 2.30.1.13.6.4 NOC.ASTEROIDES_SUBGROUP 150 seqs 2.30.1.13.6.4.1146 OTU 12 seqs prokMSA_id:13605 Nocardia nova ATCC 33726 prokMSA_id:13621 Nocardia nova str. N1112 JCM 6044 prokMSA_id:13623 Nocardia pseudosporangifera JCM 3288 prokMSA_id:13636 Nocardia otitidiscaviarum ATCC 14629 prokMSA_id:81101 Nocardia nova strain JCM 6044 complete prokMSA_id:81390 Nocardia nova strain S559 complete prokMSA_id:81683 Nocardia otitidiscaviarum strain S639 complete prokMSA_id:82005 Nocardia nova strain S556 complete prokMSA_id:82030 Nocardia nova strain DSM 43256 complete prokMSA_id:82279 Nocardia sp. DSM 46070 complete prokMSA_id:82443 Nocardia otitidiscaviarum strain DSM 43242 complete prokMSA_id:88885 Nocardia nova strain ATCC 33726T AY191250 2.30.1.13.6.4.1177 OTU 11 seqs prokMSA_id:13600 Nocardia carnea str. N1200 DSM 43397 prokMSA_id:13601 Nocardia flavorozea JCM 3332 prokMSA_id:13606 Nocardia carnea ATCC 6847 prokMSA_id:18053 N.asteroides N565 prokMSA_id:81064 Nocardia sp. DSM 43254 complete prokMSA_id:81205 Nocardia flavorosea strain JCM 3342 complete prokMSA_id:81484 Nocardia carnea strain DSM 43397 complete prokMSA_id:81540 Nocardia sp. DSM 43253 complete prokMSA_id:81651 Nocardia carnea strain S547 complete prokMSA_id:81678 Nocardia sp. DSM 43576 complete prokMSA_id:81766 Nocardia carnea strain DSM 46071 complete 2.30.1.13.6.4.1261 OTU 1 seq prokMSA_id:47640 Nocardia caishijiensis 2.30.1.13.6.4.1287 OTU 4 seqs prokMSA_id:13614 Nocardia crassostreae str. NB4H C.S. Friedman ATCC 700418 prokMSA_id:13615 Nocardia crassostrae str. RB1. U92799 prokMSA_id:13616 Nocardia crassostrae str. OB3. U92800 prokMSA_id:81719 Nocardia crassostreae strain JCM 10500 complete AF430049 2.30.1.13.6.4.1304 OTU 1 seq prokMSA_id:63690 Nocardia sp. 99-08-244A 2.30.1.13.6.4.1321 OTU 1 seq prokMSA_id:71341 Nocardia devorans strain N1086 2.30.1.13.6.4.1356 OTU 1 seq prokMSA_id:46104 Nocardia sp. IM-5391 2.30.1.13.6.4.1403 OTU 13 seqs prokMSA_id:13630 Nocardia salmonicida JCM 4826 prokMSA_id:25032 Nocardia sp. R7 prokMSA_id:33953 Nocardia sp. R441 prokMSA_id:35733 Nocardia sp. R25 prokMSA_id:36510 Nocardia sp. W504 prokMSA_id:44760 Nocardia sp. R47 prokMSA_id:45989 Nocardia sp. R18 prokMSA_id:47333 Nocardia sp. W32 prokMSA_id:48639 Nocardia sp. R147 prokMSA_id:49884 Nocardia sp. R112 prokMSA_id:81098 Nocardia sp. DSM 6249 complete prokMSA_id:81778 Nocardia fluminea strain DSM 44489 complete prokMSA_id:82203 Nocardia salmonicida strain DSM 40472 complete 2.30.1.13.6.4.1432 OTU 18 seqs prokMSA_id:13628 Nocardia vaccinii ATCC 11092 prokMSA_id:13632 Nocardia vaccinii str. N1199 DSM 43285 prokMSA_id:13633 Nocardia Y9 str. Y9 prokMSA_id:20332 Nocardia africana AF277198 prokMSA_id:24358 Nocardia veterana prokMSA_id:38297 Nocardia africana SD925 AF302230 prokMSA_id:40966 Nocardia africana SD880 prokMSA_id:43786 Nocardia africana SD910 AF302231 prokMSA_id:55920 Nocardia veterana isolate B430 AY149599 prokMSA_id:81458 Nocardia vaccinii strain DSM 43285 complete prokMSA_id:81459 Nocardia veterana strain DSM 40777 complete prokMSA_id:82272 Nocardia africana strain DSM 44491 complete prokMSA_id:82356 Nocardia veterana strain DSM 44445 complete prokMSA_id:83004 Nocardia africana strain DSM 44491 prokMSA_id:84635 Nocardia veterana strain DSM 43557 complete prokMSA_id:85655 Nocardia veterana prokMSA_id:89234 Nocardia veterana strain DSM 44445T AY191253 prokMSA_id:89609 Nocardia vaccinii strain ATCC 11092T AY191252 2.30.1.13.6.4.1440 OTU 1 seq prokMSA_id:20154 ARFS-10 2.30.1.13.6.4.1454 OTU 5 seqs prokMSA_id:58653 Nocardia sp. YU011-1 prokMSA_id:82068 Nocardia sp. DSM 40872 complete prokMSA_id:82698 Nocardia sp. IFM 0330 prokMSA_id:83505 Nocardia sp. IFM 0260 prokMSA_id:84206 Nocardia sp. IFM 0265 2.30.1.13.6.4.1552 OTU 5 seqs prokMSA_id:13629 Nocardia asteroides prokMSA_id:35195 Nocardia cyriacigeorgici complete prokMSA_id:81150 Nocardia cyriacigeorgica strain DSM 44484 complete prokMSA_id:81647 Nocardia cyriacigeorgica strain DSM 43005 complete prokMSA_id:83908 Nocardia cyriacigeorgica 2.30.1.13.6.4.1585 OTU 5 seqs prokMSA_id:31681 Nocardia sp. R32 prokMSA_id:33810 Nocardia sp. R31 prokMSA_id:43502 Nocardia sp. R98 prokMSA_id:48203 Nocardia sp. R11 prokMSA_id:52632 Nocardia sp. W433 2.30.1.13.6.4.1600 OTU 6 seqs prokMSA_id:13647 Nocardia pseudobrasiliensis CIP 92604 prokMSA_id:13649 Nocardia pseudobrasiliensis CDC N249 prokMSA_id:63688 Nocardia sp. 97-21-103A prokMSA_id:64359 Nocardia pseudobrasiliensis strain:IFM 10098 prokMSA_id:81200 Nocardia pseudobrasiliensis strain DSM 44290 complete prokMSA_id:82307 Nocardia pseudobrasiliensis strain JCM 9883 complete 2.30.1.13.6.4.1696 OTU 6 seqs prokMSA_id:13617 Nocardia asteroides str. M. Goodfellow N317 ATCC 19247 prokMSA_id:13624 Nocardia asteroides DSM 43757 prokMSA_id:13635 Nocardia asteroides str. M. Goodfellow N317 ATCC 19247 prokMSA_id:19866 Nocardia sp. 4.1177 prokMSA_id:82196 Nocardia asteroides strain DSM 43757 complete prokMSA_id:82420 Nocardia asteroides strain DSM 43255 complete 2.30.1.13.6.4.1769 OTU 1 seq prokMSA_id:82059 Nocardia sp. DSM 46067 complete 2.30.1.13.6.4.1787 OTU 2 seqs prokMSA_id:13622 Nocardia MK703-102F1 str. MK703-102F1 prokMSA_id:82429 Nocardia pseudovaccinii strain DSM 43406 complete 2.30.1.13.6.4.1805 OTU 5 seqs prokMSA_id:22010 Nocardia sp. W148 prokMSA_id:22063 Nocardia sp. S24 prokMSA_id:37262 Nocardia sp. R86 prokMSA_id:47624 Nocardia sp. R133 prokMSA_id:54743 Nocardia ignorata strain DSM 44496 2.30.1.13.6.4.1834 OTU 8 seqs prokMSA_id:13602 Nocardia transvalensis ATCC 6865 prokMSA_id:13638 Nocardia transvalensis str. N1202 DSM 43405 prokMSA_id:13639 Nocardia transvalensis str. N1202 DSM 43405 prokMSA_id:22413 N.transvalensis N1045 prokMSA_id:34077 N.transvalensis N630 prokMSA_id:82063 Nocardia transvalensis strain DSM 43405 complete AF430047 prokMSA_id:92185 Nocardia transvalensis strain:IFM 10065 AB084448 prokMSA_id:92434 Nocardia transvalensis strain:IFM 0998 AB084447 2.30.1.13.6.4.1917 OTU 23 seqs prokMSA_id:13604 Nocardia farcinica prokMSA_id:13608 Nocardia otitidiscaviarum prokMSA_id:13609 Nocardia amycolata str. AS4.1521T prokMSA_id:13610 Nocardia farcinica str. GD1 prokMSA_id:13611 Nocardia farcinica prokMSA_id:13619 Nocardia farcinica str. M. Goodfellow N898 ATCC 3318 prokMSA_id:13627 Nocardia asteroides ATCC 23824 prokMSA_id:29160 N.asteroides N488 prokMSA_id:40151 N.asteroides N450 prokMSA_id:43592 N.transvalensis N1080 prokMSA_id:48062 N.transvalensis N1082 prokMSA_id:48486 N.asteroides N206 prokMSA_id:50336 N.transvalensis N1408 prokMSA_id:75323 Nocardia sp. IFM 0860 prokMSA_id:75424 Nocardia sp. IFM 0425 prokMSA_id:76153 Nocardia sp. IFM 0245 prokMSA_id:79112 Nocardia sp. ATCC 49872 complete prokMSA_id:81174 Nocardia asteroides strain DSM 43258 complete prokMSA_id:81217 Nocardia farcinica strain DSM 43665 complete prokMSA_id:82387 Nocardia farcinica strain S560 complete prokMSA_id:84366 Nocardia alba prokMSA_id:84484 Nocardia sp. IFM 0299 prokMSA_id:86269 Nocardia puris strain IMMIB R-145T 2.30.1.13.6.4.1927 OTU 5 seqs prokMSA_id:13603 Nocardia brevicatena str. N1201 DSM 43024 prokMSA_id:13641 Nocardia brevicatena ATCC 15333 prokMSA_id:25440 Nocardia paucivorans complete prokMSA_id:81432 Nocardia brevicatena strain DSM 43024 complete prokMSA_id:82341 Nocardia paucivorans strain DSM 44386 complete 2.30.1.13.6.4.1948 OTU 1 seq prokMSA_id:40439 Nocardia soli 2.30.1.13.6.4.2048 OTU 11 seqs prokMSA_id:13637 Nocardia uniformis JCM 3224 prokMSA_id:21724 N.asteroides N569 prokMSA_id:36906 Nocardia novocastrensa strain N1251 prokMSA_id:66022 Nocardia seriolae strain NA2 prokMSA_id:74674 Nocardia sp. 7031 AF219974 prokMSA_id:81184 Nocardia uniformis strain DSM 43136 complete prokMSA_id:81660 Nocardia sp. DSM 43301 complete AF430056 prokMSA_id:81707 Nocardia sp. DSM 43395 complete prokMSA_id:81999 Nocardia sp. DSM 43260 complete prokMSA_id:84646 Nocardia tenerifenis prokMSA_id:90115 Nocardia neocaledonica AY282603 2.30.1.13.6.4.2052 OTU 4 seqs prokMSA_id:13631 Nocardia brasiliensis prokMSA_id:13640 Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296 prokMSA_id:81612 Nocardia brasiliensis strain DSM 43758 complete prokMSA_id:83250 Nocardia brasiliensis 2.30.2 THERMOANAEROBACTER_AND_RELATIVES 301 seqs 2.30.2.1 DFM.GEOTHERMICUM_GROUP 69 seqs 2.30.2.1.2316 OTU 1 seq prokMSA_id:13666 str. sporeB 2.30.2.1.2318 OTU 1 seq prokMSA_id:13669 Desulfotomaculum kuznetsovii 2.30.2.1.2320 OTU 1 seq prokMSA_id:71619 Desulfotomaculum sp. 175 2.30.2.1.2317 OTU 1 seq prokMSA_id:13667 Sporotomaculum hydroxybenzoicum str. BT DSM 5475 2.30.2.1.2324 OTU 2 seqs prokMSA_id:83718 clone:AHU18 prokMSA_id:84932 clone:ALU27 2.30.2.1.2334 OTU 1 seq prokMSA_id:13673 clone WFeA1-02 2.30.2.1.2336 OTU 1 seq prokMSA_id:13674 clone WCHB1-89 2.30.2.1.2337 OTU 1 seq prokMSA_id:13675 clone WCHA1-17 2.30.2.1.2342 OTU 2 seqs prokMSA_id:13652 Desulfotomaculum geothermicum str. BSD DSM 3669 prokMSA_id:47128 Desulfotomaculum geothermicum strain DSM 3669 2.30.2.1.2343 OTU 1 seq prokMSA_id:13676 clone EKHO-6 2.30.2.1.2345 OTU 1 seq prokMSA_id:13678 Desulfotomaculum acetoxidans str. 5575 DSM 771 2.30.2.1.2351 OTU 4 seqs prokMSA_id:13671 Desulfotomaculum thermobenzoicum str. TSB DSM 6193 prokMSA_id:13677 Desulfotomaculum sp. DSM 7476 prokMSA_id:30024 Desulfotomaculum sp. DSM 7474 prokMSA_id:51349 Desulfotomaculum thermobenzoicum strain DSM 6193 clone 11 2.30.2.1.2352 OTU 2 seqs prokMSA_id:27652 NoosaAW44 prokMSA_id:47626 TM7LH12 2.30.2.1.2359 OTU 1 seq prokMSA_id:60016 clone:JP 2.30.2.1.2373 OTU 1 seq prokMSA_id:79013 clone 1026B236 2.30.2.1.2371 OTU 3 seqs prokMSA_id:13682 Desulfotomaculum sp. DSM 7213 prokMSA_id:34816 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 10 prokMSA_id:38022 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 19A 2.30.2.1.2378 OTU 1 seq prokMSA_id:23108 MERTZ_2CM_174 2.30.2.1.2388 OTU 1 seq prokMSA_id:25424 low G+C Gram-positive YNPRH70A 2.30.2.1.2390 OTU 1 seq prokMSA_id:30331 Thermophilic propionate-oxidizing SI 2.30.2.1.2392 OTU 1 seq prokMSA_id:38532 Desulfotomaculum sp. DEM-KMe99-1 2.30.2.1.2409 OTU 1 seq prokMSA_id:42719 Toluene-degrading methanogenic consortium Eub 1 2.30.2.1.2414 OTU 1 seq prokMSA_id:51740 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 14 2.30.2.1.2420 OTU 1 seq prokMSA_id:73391 Desulfotomaculum sp. 176 2.30.2.1.2429 OTU 1 seq prokMSA_id:73970 Natronoanaerobium halophilum isolate G-M14CH-4 2.30.2.1.2433 OTU 2 seqs prokMSA_id:17524 Ferribacter thermoautotrophicus strain JW/JH-Fiji-2 prokMSA_id:21124 Ferribacter thermoautotrophicus clone KA2a 2.30.2.1.2432 OTU 3 seqs prokMSA_id:86129 clone:AHU09 prokMSA_id:86580 clone:AHU08 prokMSA_id:86590 clone:ALU17 2.30.2.1.2430 OTU 1 seq prokMSA_id:22769 Symbiobacterium sp. MN13 2.30.2.1.2443 OTU 1 seq prokMSA_id:13655 Desulfotomaculum thermoacetoxidans str. CAMZ DSM 5813 2.30.2.1.2451 OTU 2 seqs prokMSA_id:23520 Natronoanaerobium salstagnum isolate O-M12SP-2 prokMSA_id:72206 Natronoanaerobium aggerbacterium isolate G-M16NWC-4 AJ271452 2.30.2.1.2458 OTU 1 seq prokMSA_id:23525 Desulfotomaculum sp. Mechichi-2001 2.30.2.1.2465 OTU 1 seq prokMSA_id:13653 clone M4 2.30.2.1.2470 OTU 1 seq prokMSA_id:13654 Desulfotomaculum luciae str. SLT SMCC W644 2.30.2.1.2473 OTU 1 seq prokMSA_id:13656 Desulfotomaculum sp. DSM 7475 2.30.2.1.2476 OTU 1 seq prokMSA_id:17431 Sporotomaculum syntrophicum 2.30.2.1.2477 OTU 1 seq prokMSA_id:13657 Desulfotomaculum australicum str. AB33 ACM 3917 2.30.2.1.2480 OTU 1 seq prokMSA_id:13659 Desulfotomaculum halophilum SEBR 3139 2.30.2.1.2482 OTU 1 seq prokMSA_id:37250 Desulfotomaculum sp. DEM-KMe99-2 2.30.2.1.2490 OTU 5 seqs prokMSA_id:20277 Desulfotomaculum kuznetsovii strain 17 rrnB complete prokMSA_id:29438 Desulfotomaculum kuznetsovii strain DSM 6115 prokMSA_id:45024 Desulfotomaculum kuznetsovii strain 17 complete AY036903 prokMSA_id:47271 Desulfotomaculum sp. WW1 AF442687 prokMSA_id:67543 Desulfotomaculum sp. V21 complete 2.30.2.1.2494 OTU 4 seqs prokMSA_id:30367 Desulfotomaculum sp. DEM-KMe98-4 prokMSA_id:41122 Desulfotomaculum sp. DEM-KMe98-7 prokMSA_id:51415 Desulfotomaculum sp. DEM-KMe98-8 prokMSA_id:74775 Desulfotomaculum sp. DEM-KMe98-5 2.30.2.1.2496 OTU 2 seqs prokMSA_id:13664 Desulfotomaculum thermosapovorans str. MLF DSM 6562 prokMSA_id:13681 Desulfotomaculum thermosapovorans str. MLF DSM 6562 2.30.2.1.2507 OTU 1 seq prokMSA_id:34470 Desulfotomaculum sp. DEM-KMe99-3 2.30.2.1.2514 OTU 1 seq prokMSA_id:68349 Firmicutes oral clone MCE7_107 E1 2.30.2.1.2519 OTU 1 seq prokMSA_id:71451 clone clB70 2.30.2.1.2518 OTU 1 seq prokMSA_id:70079 clone clB14 2.30.2.1.2530 OTU 2 seqs prokMSA_id:13683 str. strain 7 prokMSA_id:89131 Anaerobic LR7.2 complete AY327251 2.30.2.1.2541 OTU 1 seq prokMSA_id:60012 clone:UT-2 2.30.2.1.2552 OTU 1 seq prokMSA_id:21704 TGO complete 2.30.2.1.2557 OTU 1 seq prokMSA_id:13661 Desulfotomaculum thermobenzoicum 2.30.2.2 SYNTROPHOMONAS_ASSEMBLAGE 16 seqs 2.30.2.2.2319 OTU 1 seq prokMSA_id:45167 Anaerobranca bogoriae complete 2.30.2.2.2350 OTU 1 seq prokMSA_id:24677 Anaerobranca californiensis strain Paoha-1 2.30.2.2.2361 OTU 1 seq prokMSA_id:13687 Syntrophomonas MGB-C1 str. MGB-C1 2.30.2.2.2362 OTU 1 seq prokMSA_id:13688 Syntrophomonas wolfei str. LYB 2.30.2.2.2381 OTU 1 seq prokMSA_id:34976 RFLP11 2.30.2.2.2384 OTU 1 seq prokMSA_id:26077 Saltmarsh clone LCP-89 2.30.2.2.2406 OTU 3 seqs prokMSA_id:24671 TCE4 AF349760 prokMSA_id:77374 clone R6b2 prokMSA_id:86052 low G+C Gram-positive clone G1-6 AY280638 2.30.2.2.2456 OTU 1 seq prokMSA_id:77473 clone R4b14 2.30.2.2.2467 OTU 1 seq prokMSA_id:13691 str. TGB-C1 2.30.2.2.2481 OTU 1 seq prokMSA_id:34346 Pelospora glutarica strain WoGl3 2.30.2.2.2483 OTU 1 seq prokMSA_id:62405 Gram-positive clone FTLM142 2.30.2.2.2536 OTU 1 seq prokMSA_id:13685 clone WCHB1-71 2.30.2.2.2543 OTU 1 seq prokMSA_id:72821 clone B8 2.30.2.2.2555 OTU 1 seq prokMSA_id:13690 clone WCHB1-82 2.30.2.3 MOORELLA_GROUP 47 seqs 2.30.2.3.2338 OTU 1 seq prokMSA_id:79090 clone JG30-KF-A11 2.30.2.3.2365 OTU 2 seqs prokMSA_id:13708 Moorella glycerini str. JW/AS-Y6 DSM 11254 prokMSA_id:82633 Moorella sp. TMS 2.30.2.3.2368 OTU 4 seqs prokMSA_id:13697 Moorella thermoautotrophica prokMSA_id:13703 Moorella thermoacetica str. ET-5a prokMSA_id:13704 Moorella thermoautotrophica str. JW 701/3 DSM 1974 prokMSA_id:75104 Moorella sp. F21 cds 2.30.2.3.2380 OTU 1 seq prokMSA_id:83693 clone B03R012 2.30.2.3.2382 OTU 1 seq prokMSA_id:75551 clone JG37-AG-4 2.30.2.3.2394 OTU 1 seq prokMSA_id:13702 clone ACE-45 2.30.2.3.2393 OTU 1 seq prokMSA_id:13701 clone BURTON-4 2.30.2.3.2391 OTU 1 seq prokMSA_id:22245 clone BA021 complete 2.30.2.3.2398 OTU 1 seq prokMSA_id:63105 clone MB-C2-106 2.30.2.3.2403 OTU 1 seq prokMSA_id:13709 clone KTK 14 2.30.2.3.2407 OTU 1 seq prokMSA_id:27974 thermal soil clone YNPFFP2 2.30.2.3.2411 OTU 1 seq prokMSA_id:13713 clone GCA018 2.30.2.3.2416 OTU 1 seq prokMSA_id:19248 AT425_EubA5 2.30.2.3.2424 OTU 1 seq prokMSA_id:13710 clone TAYNAYA-2 2.30.2.3.2422 OTU 1 seq prokMSA_id:13719 str. JTB138 2.30.2.3.2426 OTU 1 seq prokMSA_id:13711 clone ACE-5 2.30.2.3.2427 OTU 1 seq prokMSA_id:13712 clone OPB54 2.30.2.3.2437 OTU 1 seq prokMSA_id:62682 low G+C Gram-positive clone ML623J-19 2.30.2.3.2435 OTU 1 seq prokMSA_id:13715 clone SB-15 2.30.2.3.2440 OTU 1 seq prokMSA_id:13718 clone ST12 2.30.2.3.2439 OTU 1 seq prokMSA_id:13717 str. PB 2.30.2.3.2454 OTU 1 seq prokMSA_id:28429 clone 12-31 2.30.2.3.2472 OTU 1 seq prokMSA_id:13698 clone I025 2.30.2.3.2474 OTU 1 seq prokMSA_id:13699 clone TAYNAYA-18 2.30.2.3.2489 OTU 1 seq prokMSA_id:85667 clone B01R005 2.30.2.3.2491 OTU 9 seqs prokMSA_id:13714 clone GCA025 prokMSA_id:13716 clone SB-45 prokMSA_id:13720 str. JTB243 prokMSA_id:63112 clone MB-B2-103 prokMSA_id:63127 clone MA-A2-104 prokMSA_id:77784 clone Hyd01-10 prokMSA_id:86362 clone B04R002 prokMSA_id:96092 Gram-positive clone GoM GC234 602E AY211673 prokMSA_id:96510 Gram-positive clone GoM GC234 019E AY211667 2.30.2.3.2506 OTU 1 seq prokMSA_id:38927 CLEAR-6 2.30.2.3.2513 OTU 1 seq prokMSA_id:74641 low G+C Gram-positive clone ML635J-9 2.30.2.3.2535 OTU 1 seq prokMSA_id:74279 C1_B023 2.30.2.3.2537 OTU 1 seq prokMSA_id:63782 Verrucomicrobia clone LD1-PA39 2.30.2.3.2542 OTU 1 seq prokMSA_id:56514 soil clone C062 2.30.2.3.2545 OTU 3 seqs prokMSA_id:82872 Anaerobic syntrophic OL AB106354 prokMSA_id:83916 Anaerobic syntrophic JL AB106353 prokMSA_id:85421 Anaerobic syntrophic JE 2.30.2.3.2547 OTU 1 seq prokMSA_id:72683 CS_B013 2.30.2.4 TAR.MARIANENSIS_GROUP 12 seqs 2.30.2.4.2353 OTU 1 seq prokMSA_id:31896 actinobacterium clone R171 2.30.2.4.2360 OTU 1 seq prokMSA_id:49727 actinobacterium MERTZ_21CM_395 2.30.2.4.2436 OTU 1 seq prokMSA_id:13721 Thermaerobacter marianensis str. 7p75a 2.30.2.4.2462 OTU 1 seq prokMSA_id:13722 unnamed organism 2.30.2.4.2466 OTU 1 seq prokMSA_id:13727 str. JTB326 2.30.2.4.2464 OTU 1 seq prokMSA_id:13726 str. BD7-2 2.30.2.4.2493 OTU 2 seqs prokMSA_id:22146 Thermaerobacter subterraneus complete prokMSA_id:50462 Thermaerobacter nagasakiense 2.30.2.4.2517 OTU 1 seq prokMSA_id:36253 actinobacterium MERTZ_2CM_192 2.30.2.4.2516 OTU 1 seq prokMSA_id:62410 Gram-positive clone FTL22 2.30.2.4.2520 OTU 1 seq prokMSA_id:86373 delta clone DBBB-60 2.30.2.4.2554 OTU 1 seq prokMSA_id:60181 clone TK19 2.30.2.5 DICTYOGLOMUS_GROUP 108 seqs 2.30.2.5.1 TTR.FERRIREDUCENS_SUBGROUP 3 seqs 2.30.2.5.1.2471 OTU 1 seq prokMSA_id:13728 Thermoterrabacterium ferrireducens 2.30.2.5.1.2475 OTU 1 seq prokMSA_id:13729 clone WCHA1-37 2.30.2.5.1.2544 OTU 1 seq prokMSA_id:13730 Thermoterrabacterium ferrireducens 2.30.2.5.3 DGL.THERMOPHILUM_SUBGROUP 5 seqs 2.30.2.5.3.2309 OTU 1 seq prokMSA_id:13736 clone OPS61 2.30.2.5.3.2313 OTU 1 seq prokMSA_id:13737 clone OPS145 2.30.2.5.3.2355 OTU 2 seqs prokMSA_id:13733 Dictyoglomus thermophilum str. Rt46B.1 prokMSA_id:13735 Dictyoglomus thermophilum str. H-6-12 DSM 3960 2.30.2.5.3.2546 OTU 1 seq prokMSA_id:13732 Dictyoglomus sp. str. Rt46-B1 2.30.2.5.4 ENVIRONMENTAL_CLONE_OPB9_SUBGROUP 7 seqs 2.30.2.5.4.2325 OTU 1 seq prokMSA_id:13740 clone BPC110 2.30.2.5.4.2369 OTU 2 seqs prokMSA_id:13738 clone OPB9 prokMSA_id:13739 clone OPB34 2.30.2.5.4.2399 OTU 1 seq prokMSA_id:82558 clone CCM2b 2.30.2.5.4.2449 OTU 1 seq prokMSA_id:17280 clone BA068 complete 2.30.2.5.4.2450 OTU 1 seq prokMSA_id:75029 Chlorobi clone Sh765B-TzT/AG-5 2.30.2.5.4.2509 OTU 1 seq prokMSA_id:46370 UASB_TL84 complete 2.30.2.5.5 DH.ETHENOGENES_SUBGROUP 79 seqs 2.30.2.5.5.2314 OTU 1 seq prokMSA_id:33361 green nonsulfur MERTZ_2CM_4 2.30.2.5.5.2321 OTU 1 seq prokMSA_id:24666 green nonsulfur MERTZ_2CM_250 2.30.2.5.5.2330 OTU 1 seq prokMSA_id:13742 clone ACE-22 2.30.2.5.5.2331 OTU 1 seq prokMSA_id:13743 clone vadinBA26 2.30.2.5.5.2333 OTU 2 seqs prokMSA_id:13746 clone H1.4.f prokMSA_id:73071 H1.4.f AF005748 2.30.2.5.5.2335 OTU 1 seq prokMSA_id:13747 clone t0.6.f 2.30.2.5.5.2341 OTU 1 seq prokMSA_id:13749 clone RB21 2.30.2.5.5.2339 OTU 1 seq prokMSA_id:77206 Chlorobi clone Sh765B-TzT-20 2.30.2.5.5.2348 OTU 2 seqs prokMSA_id:13744 clone t0.8.f prokMSA_id:74334 t0.8.f 2.30.2.5.5.2349 OTU 1 seq prokMSA_id:31890 clone GIF9 2.30.2.5.5.2354 OTU 2 seqs prokMSA_id:13748 clone H3.93 prokMSA_id:70341 H3.93 2.30.2.5.5.2363 OTU 1 seq prokMSA_id:41231 DF-1 2.30.2.5.5.2367 OTU 1 seq prokMSA_id:63109 clone MB-B2-113 2.30.2.5.5.2370 OTU 43 seqs prokMSA_id:18518 CBDB1 prokMSA_id:18992 Dehalococcoides sp. clone DHC-bmtp prokMSA_id:19679 DCE17 prokMSA_id:20043 Dehalococcoides sp. clone DHC-lnz prokMSA_id:22470 Dehalococcoides sp. clone DHC-kafb AF388537 prokMSA_id:23297 clone 5G prokMSA_id:25537 Dehalococcoides sp. clone DHC-nftx AF388546 prokMSA_id:25968 Dehalococcoides sp. clone DHC-kb1C AF388539 prokMSA_id:26309 Dehalococcoides sp. clone DHC-lf13 AF388542 prokMSA_id:29355 Dehalococcoides sp. FL2 prokMSA_id:29714 clone 12G prokMSA_id:31094 Dehalococcoides sp. clone DHC-kb1P AF388540 prokMSA_id:31301 Dehalococcoides sp. clone DHC-asd AF388530 prokMSA_id:31803 Dehalococcoides sp. clone DHC-dll AF388536 prokMSA_id:33280 Dehalococcoides sp. clone DHC-plk prokMSA_id:34971 Dehalococcoides sp. clone DHC-chd prokMSA_id:39818 Dehalococcoides sp. clone DHC-bmtv prokMSA_id:41208 clone 8a prokMSA_id:45038 Dehalococcoides sp. clone DHC-vic prokMSA_id:45091 Dehalococcoides sp. clone DHC-pin AF388548 prokMSA_id:45746 Dehalococcoides sp. clone DHC-klf prokMSA_id:48395 Dehalococcoides sp. clone DHC-dab AF388535 prokMSA_id:48806 clone 4D prokMSA_id:50281 Dehalococcoides sp. clone DHC-bmtc prokMSA_id:51551 clone 5H prokMSA_id:55484 Dehalococcoides sp. clone ccslm5 prokMSA_id:56507 Dehalococcoides sp. Pinellas AY146781 prokMSA_id:59912 Dehalococcoides sp. clone ccslm202 prokMSA_id:62397 Dehalococcoides sp. clone FTLM182 prokMSA_id:71949 DCEH2 prokMSA_id:73418 Dehalococcoides sp. KB-1/PCE AY146780 prokMSA_id:73942 Dehalococcoides sp. KB-1/VC AY146779 prokMSA_id:74423 Dehalococcoides ethenogenes prokMSA_id:76593 Dehalococcoides sp. BAV1 prokMSA_id:79135 Dehalococcoides sp. clone AKS31 prokMSA_id:79207 Dehalococcoides sp. clone ARC61 prokMSA_id:79293 Dehalococcoides sp. clone AKS14 prokMSA_id:79375 Dehalococcoides sp. clone ARC18 prokMSA_id:79443 Dehalococcoides sp. clone ARC13 prokMSA_id:82039 MTCE-T2 4A prokMSA_id:82136 MTCE-T2 10H prokMSA_id:88839 VS AY323233 prokMSA_id:92766 Dehalococcoides sp. clone M7B1 AY351859 2.30.2.5.5.2385 OTU 1 seq prokMSA_id:74881 Chlorobi clone Sh765B-AG-111 2.30.2.5.5.2397 OTU 1 seq prokMSA_id:63104 clone MB-C2-127 2.30.2.5.5.2396 OTU 1 seq prokMSA_id:28770 green nonsulfur MERTZ_0CM_109 2.30.2.5.5.2401 OTU 1 seq prokMSA_id:42208 PENDANT-35 2.30.2.5.5.2418 OTU 1 seq prokMSA_id:35933 clone GIF3 2.30.2.5.5.2428 OTU 1 seq prokMSA_id:16981 RFLP17 2.30.2.5.5.2425 OTU 1 seq prokMSA_id:31352 clone Car147fc 2.30.2.5.5.2438 OTU 1 seq prokMSA_id:63120 clone MB-A2-110 2.30.2.5.5.2445 OTU 1 seq prokMSA_id:63128 clone MB-A2-103 2.30.2.5.5.2484 OTU 1 seq prokMSA_id:63106 clone MB-C2-126 2.30.2.5.5.2485 OTU 1 seq prokMSA_id:63214 clone FW22 2.30.2.5.5.2487 OTU 1 seq prokMSA_id:76182 Chlorobi clone Sh765B-TzT-6 2.30.2.5.5.2488 OTU 1 seq prokMSA_id:75600 Chlorobi clone Sh765B-AG-130 2.30.2.5.5.2497 OTU 1 seq prokMSA_id:74169 clone FW60 2.30.2.5.5.2499 OTU 1 seq prokMSA_id:49414 green non-sulfur MT61 2.30.2.5.5.2523 OTU 2 seqs prokMSA_id:56484 clone TK30 prokMSA_id:60159 clone TK10 AJ347055 2.30.2.5.5.2539 OTU 1 seq prokMSA_id:82007 clone KD4-96 2.30.2.5.5.2551 OTU 1 seq prokMSA_id:36910 green nonsulfur MERTZ_21CM_329 2.30.2.5.5.2553 OTU 1 seq prokMSA_id:53827 clone RA13C7 2.30.2.5.6 ENVIRONMENTAL_CLONE_SAR202_SUBGROUP 14 seqs 2.30.2.5.6.2312 OTU 1 seq prokMSA_id:21495 Chloroflexaceae group Arctic95A-18 2.30.2.5.6.2315 OTU 1 seq prokMSA_id:23743 clone R177 2.30.2.5.6.2323 OTU 1 seq prokMSA_id:30149 marine pN1-52 2.30.2.5.6.2344 OTU 1 seq prokMSA_id:65684 soil clone C083 2.30.2.5.6.2356 OTU 1 seq prokMSA_id:13750 Sargasso Sea Bermuda Atlantic Time-Series Study clone SAR 30 2.30.2.5.6.2357 OTU 1 seq prokMSA_id:13752 clone WS52f 2.30.2.5.6.2358 OTU 1 seq prokMSA_id:13753 Sargasso Sea Bermuda Atlantic Time-Series Study clone SAR 20 2.30.2.5.6.2495 OTU 2 seqs prokMSA_id:44260 Crater Lake CL500-9 prokMSA_id:69005 Crater Lake CL500-10 2.30.2.5.6.2511 OTU 2 seqs prokMSA_id:13754 clone H1.2.f. AF005747 prokMSA_id:74429 H1.2.f 2.30.2.5.6.2534 OTU 1 seq prokMSA_id:65691 soil clone S085 2.30.2.5.6.2532 OTU 1 seq prokMSA_id:74658 Chloroflexi clone FTL276 2.30.2.5.6.2556 OTU 1 seq prokMSA_id:78515 clone JG30-KF-CM66 2.30.2.6 THERMOANAEROBACTER_GROUP 49 seqs 2.30.2.6.1 TBM.THERMOSULFURIGENES_SUBGROUP 8 seqs 2.30.2.6.1.2366 OTU 2 seqs prokMSA_id:36077 tbr4-78 prokMSA_id:36399 tbr1-8 2.30.2.6.1.2441 OTU 3 seqs prokMSA_id:13755 Thermoanaerobacterium xylanolyticum str. LX-II DSM 7097 . L0 prokMSA_id:13757 Thermoanaerobacterium thermosulfurigenes str. 4B ATCC 33743 prokMSA_id:13760 Thermoanaerobium "lactoethylicum" str. ZE-1 DSM 9003 2.30.2.6.1.2453 OTU 1 seq prokMSA_id:27592 Thermoanaerobacterium thermosaccharolyticum strain D120-70 c 2.30.2.6.1.2461 OTU 1 seq prokMSA_id:13763 Thermoanaerobacterium aotearoense str. JW/SL-NZ613 2.30.2.6.1.2459 OTU 1 seq prokMSA_id:13761 Thermoanaerobacterium saccharolyticum str. B6A-RI; B6A DSM 7 2.30.2.6.2 THERMOANAEROBACTER.KIVUI 2 seqs 2.30.2.6.2.2400 OTU 1 seq prokMSA_id:34323 Clostridium uzonii strain DSM 9752 2.30.2.6.2.2468 OTU 1 seq prokMSA_id:13765 Thermoanaerobacter kivui DSM 2030 2.30.2.6.3 TAB.ETHANOLICUS_SUBGROUP 15 seqs 2.30.2.6.3.2347 OTU 7 seqs prokMSA_id:13775 clone KTK 27 prokMSA_id:13776 clone KTK 41 prokMSA_id:22143 KB1 group clone ST-3K7 prokMSA_id:32063 KB1 group clone ST-12K21 prokMSA_id:32158 KB1 group clone ST-3K22 prokMSA_id:40722 KB1 group clone ST-12K35 prokMSA_id:42260 KB1 group clone ST-3K6 2.30.2.6.3.2372 OTU 3 seqs prokMSA_id:13769 Thermoanaerobacter acetoethylicus str. HTB2/W ATCC 33265 . X prokMSA_id:13770 Thermoanaerobacter acetoethylicus str. HTB2/W ATCC 33265 . L prokMSA_id:13772 Thermoanaerobacter ethanolicus str. JW200 ATCC 31550 2.30.2.6.3.2463 OTU 1 seq prokMSA_id:29733 Thermoanaerobacter sulfurigignens 2.30.2.6.3.2486 OTU 2 seqs prokMSA_id:13773 Clostridium sp. str. AZ3 B.1 prokMSA_id:13774 Thermoanaerobacter thermohydrosulfuricus str. E100-69 DSM 56 2.30.2.6.3.2559 OTU 1 seq prokMSA_id:13768 Thermoanaerobacter sulfurophilus str. L-64 DSM 11584 2.30.2.6.3.2558 OTU 1 seq prokMSA_id:13767 Thermoanaerobacter sp. str. AB11 Ad 2.30.2.6.4 TAB.THERMOCOPRIAE_SUBGROUP 17 seqs 2.30.2.6.4.2322 OTU 1 seq prokMSA_id:28514 CHA3-125 clone CHA3-125 2.30.2.6.4.2346 OTU 1 seq prokMSA_id:13786 clone VC2.1 Bac23 2.30.2.6.4.2364 OTU 1 seq prokMSA_id:83837 Thermovibrio ammonificans strain HB-1 2.30.2.6.4.2376 OTU 1 seq prokMSA_id:13779 VC2.1 Bac48 complete 2.30.2.6.4.2383 OTU 1 seq prokMSA_id:13781 Thermoanaerobacter mathranii str. A3 DSM 11426 2.30.2.6.4.2389 OTU 1 seq prokMSA_id:13787 VC2.1 Bac24 complete 2.30.2.6.4.2442 OTU 6 seqs prokMSA_id:13782 VC2.1 Bac2 complete prokMSA_id:13783 clone VC2.1 Bac3 prokMSA_id:13784 VC2.1 Bac5 complete prokMSA_id:13785 VC2.1 Bac13 complete prokMSA_id:13788 VC2.1 Bac34 complete prokMSA_id:85051 Desulfurobacterium crinifex strain NE 1206 2.30.2.6.4.2479 OTU 2 seqs prokMSA_id:13778 Thermoanaerobacter thermocopriae str. JT-3 IAM 13577 prokMSA_id:13780 Thermoanaerobacter thermocopriae str. JT-3 IAM 13577 2.30.2.6.4.2510 OTU 2 seqs prokMSA_id:26307 CHA3-27 clone CHA3-27 AJ132736 prokMSA_id:39086 CHA3-117 clone CHA3-117 2.30.2.6.4.2524 OTU 1 seq prokMSA_id:49867 clone 33-PA42B99 2.30.2.6.5 TAB.BROCKII_SUBGROUP 7 seqs 2.30.2.6.5.2311 OTU 1 seq prokMSA_id:34305 O11E1 2.30.2.6.5.2377 OTU 1 seq prokMSA_id:39044 Carboxydobrachium pacificus 2.30.2.6.5.2408 OTU 1 seq prokMSA_id:13793 Thermoanaerobacter brockii subsp. lactiethylicus DSM 9801 2.30.2.6.5.2478 OTU 3 seqs prokMSA_id:71328 O14E7 AF220322 prokMSA_id:85550 Thermoanaerobacter subterraneus strain SL9 prokMSA_id:87991 Thermoanaerobacter sp. K67 AY280871 2.30.2.6.5.2505 OTU 1 seq prokMSA_id:70136 O14C2 2.30.3 SPOROMUSA_AND_RELATIVES 357 seqs 2.30.3.1 SPOROMUSA_GROUP 227 seqs 2.30.3.1.1 SLN.RUMINA_SUBGROUP 87 seqs 2.30.3.1.1.1012 OTU 1 seq prokMSA_id:13813 clone RFP7 2.30.3.1.1.1042 OTU 1 seq prokMSA_id:33404 rumen 4C0d-18 2.30.3.1.1.1079 OTU 1 seq prokMSA_id:29533 Propionispira arboris strain DSM 2179 2.30.3.1.1.147 OTU 2 seqs prokMSA_id:36536 clone p-365-a3 prokMSA_id:72926 clone p-73-a5 2.30.3.1.1.191 OTU 1 seq prokMSA_id:22425 Selenomonas sp. oral clone CS024 2.30.3.1.1.250 OTU 4 seqs prokMSA_id:24283 rumen 3C3d-5 AB034081 prokMSA_id:31775 rumen 3C3d-9 prokMSA_id:46245 rumen 4C28d-3 AB034137 prokMSA_id:51519 rumen 3C3d-10 AB034079 2.30.3.1.1.304 OTU 4 seqs prokMSA_id:13812 Selenomonas ruminantium subsp. lactilytica JCM 6582 prokMSA_id:13814 clone RFN3 prokMSA_id:29567 Selenomonas ruminantium isolate EAT2 prokMSA_id:39424 Selenomonas ruminantium isolate EG19 2.30.3.1.1.336 OTU 1 seq prokMSA_id:31559 rumen 6C3d-34 2.30.3.1.1.34 OTU 4 seqs prokMSA_id:22408 rumen 3C28d-2 prokMSA_id:27326 rumen 3C28d-7 prokMSA_id:38382 rumen 3C28d-11 prokMSA_id:41385 rumen 3C28d-9 2.30.3.1.1.351 OTU 1 seq prokMSA_id:41482 Mitsuokella jalaludinii strain M9 complete 2.30.3.1.1.354 OTU 2 seqs prokMSA_id:13817 Zymophilus paucivorans str. SH2 DSM 20756 prokMSA_id:36295 Zymophilus paucivorans AF373025 2.30.3.1.1.362 OTU 1 seq prokMSA_id:31620 Selenomonas-like sp. oral strain FNA3 2.30.3.1.1.377 OTU 1 seq prokMSA_id:51787 Selenomonas sp. oral clone EW079 2.30.3.1.1.46 OTU 1 seq prokMSA_id:43296 rumen 6C3d-30 2.30.3.1.1.464 OTU 1 seq prokMSA_id:29056 Selenomonas sp. oral clone EW084 2.30.3.1.1.489 OTU 3 seqs prokMSA_id:13805 Anaerovibrio lipolytica DSM 3074. AJ010959 prokMSA_id:13815 clone RFN69 prokMSA_id:38984 Anaerovibrio lipolytica 2.30.3.1.1.497 OTU 1 seq prokMSA_id:74175 Selenomonas sp. oral clone CS002 2.30.3.1.1.54 OTU 1 seq prokMSA_id:70619 Selenomonas sp. oral clone AA024 2.30.3.1.1.545 OTU 2 seqs prokMSA_id:13801 Selenomonas ruminantium subsp. lactilytica DSM 2872 prokMSA_id:40982 Selenomonas ruminatium 2.30.3.1.1.556 OTU 1 seq prokMSA_id:85751 rumen clone BS17 2.30.3.1.1.603 OTU 1 seq prokMSA_id:37768 Megamonas hypermegale strain DSM 1672T 2.30.3.1.1.657 OTU 4 seqs prokMSA_id:23591 Selenomonas-like sp. oral clone DM071 prokMSA_id:42552 Selenomonas sp. oral clone EZ011 prokMSA_id:43268 Selenomonas-like sp. oral strain GAA14 prokMSA_id:87223 Selenomonas genomosp. C2 AY278628 2.30.3.1.1.685 OTU 2 seqs prokMSA_id:13802 Selenomonas lacticifex str. VB4b DSM 20757 prokMSA_id:24490 Selenomonas lacticifex 2.30.3.1.1.709 OTU 5 seqs prokMSA_id:13800 Selenomonas ruminantium subsp. lactilytica str. HD4 prokMSA_id:13816 Selenomonas ruminantium str. S20 prokMSA_id:45161 Selenomonas ruminantium isolate ES3 prokMSA_id:85930 rumen clone BF13 prokMSA_id:86616 rumen clone BF32 2.30.3.1.1.710 OTU 12 seqs prokMSA_id:13806 Centipeda periodontii DSM 2778. AJ010963 prokMSA_id:16970 Selenomonas sp. oral clone AJ036 prokMSA_id:28692 Selenomonas dianae AF287801 prokMSA_id:39572 Centipeda periodontii strain HB-2 AF458222 prokMSA_id:39975 Selenomonas sp. clone DS071 AF366274 prokMSA_id:42483 Selenomonas infelix prokMSA_id:59529 Selenomonas sp. oral clone P4PA_36 P2 prokMSA_id:70073 Selenomonas sp. oral clone DY027 prokMSA_id:72580 Selenomonas sp. oral clone EY047 prokMSA_id:92034 Selenomonas sp. oral clone GI064 AY349404 prokMSA_id:92124 Selenomonas sp. oral clone IK004 AY349407 prokMSA_id:92541 Selenomonas sp. oral clone GT010 AY349405 2.30.3.1.1.714 OTU 1 seq prokMSA_id:17375 rumen 4C28d-14 2.30.3.1.1.78 OTU 1 seq prokMSA_id:32169 rumen 4C3d-9 2.30.3.1.1.794 OTU 1 seq prokMSA_id:33071 Selenomonas sp. clone DS051 2.30.3.1.1.80 OTU 4 seqs prokMSA_id:36002 human oral A38 AF201987 prokMSA_id:40840 Selenomonas noxia prokMSA_id:71192 Selenomonas noxia-like sp. oral clone CI002 prokMSA_id:72188 Selenomonas sp. oral clone EQ054 2.30.3.1.1.821 OTU 1 seq prokMSA_id:34987 clone p-2365-55G5 2.30.3.1.1.835 OTU 1 seq prokMSA_id:51109 rumen 2C28d-11 2.30.3.1.1.85 OTU 1 seq prokMSA_id:13799 Selenomonas ruminantium str. K2 2.30.3.1.1.855 OTU 1 seq prokMSA_id:28118 Selenomonas flueggei-like sp. clone AH132 2.30.3.1.1.865 OTU 7 seqs prokMSA_id:13809 Selenomonas sputigena ATCC 35185 prokMSA_id:17310 Selenomonas sputingena prokMSA_id:22780 Selenomonas sp. oral clone EW051a prokMSA_id:31951 Selenomonas sputigena prokMSA_id:52640 Selenomonas sp. oral clone DD020 prokMSA_id:72672 human oral A37 AF201986 prokMSA_id:73837 E1-K17 2.30.3.1.1.882 OTU 1 seq prokMSA_id:21823 clone p-2858-6C5 2.30.3.1.1.944 OTU 2 seqs prokMSA_id:45515 rumen 5C0d-24 prokMSA_id:48795 rumen 4C28d-2 2.30.3.1.1.949 OTU 1 seq prokMSA_id:41729 clone p-4726-2Wb2 2.30.3.1.1.959 OTU 1 seq prokMSA_id:13803 Schwartzia succinivorans str. S1-1 DSM 10502 2.30.3.1.1.960 OTU 1 seq prokMSA_id:13804 clone RF4 2.30.3.1.1.973 OTU 1 seq prokMSA_id:13807 clone 30-20 2.30.3.1.1.975 OTU 1 seq prokMSA_id:72198 mpn-isolate group 9 2.30.3.1.1.986 OTU 1 seq prokMSA_id:70887 Selenomonas sp. oral clone EW076 2.30.3.1.1.999 OTU 2 seqs prokMSA_id:21285 Selenomonas-like sp. oral clone CS015 prokMSA_id:83279 Selenomonas sp. oral clone P2PA_80 P4 2.30.3.1.2 VLN.PARVULA_SUBGROUP 65 seqs 2.30.3.1.2.1026 OTU 2 seqs prokMSA_id:26894 Veillonella sp. ADV 281.99 prokMSA_id:85594 Veillonella sp. 2001-112662 2.30.3.1.2.126 OTU 1 seq prokMSA_id:59563 Dialister sp. oral clone FY011 2.30.3.1.2.131 OTU 1 seq prokMSA_id:77363 A4 2.30.3.1.2.150 OTU 1 seq prokMSA_id:23368 Dialister sp. ADV 04.01 2.30.3.1.2.181 OTU 1 seq prokMSA_id:58262 Allisonella histaminiformans 2.30.3.1.2.190 OTU 13 seqs prokMSA_id:13829 Megasphaera elsdenii str. B159 ATCC 17752 prokMSA_id:20064 clone p-1934-s962-3 prokMSA_id:20560 Megasphaera elsdenii ATCC 25940 prokMSA_id:24370 Megasphaera elsdenii strain YJ-4 prokMSA_id:25188 Megasphaera elsdenii strain JL1 prokMSA_id:36860 Megasphaera elsdenii S2 prokMSA_id:46322 rumen 3C3d-7 prokMSA_id:50822 rumen 5C3d-9 prokMSA_id:52166 rumen 3C3d-18 prokMSA_id:53032 Megasphaera elsdenii S3 prokMSA_id:71785 Megasphaera elsdenii strain T81 prokMSA_id:74182 Megasphaera elsdenii strain La03 prokMSA_id:81738 Megasphaera elsdenii strain 7-11 2.30.3.1.2.392 OTU 1 seq prokMSA_id:55383 Dialister sp. oral clone MCE7_134 E2 2.30.3.1.2.409 OTU 1 seq prokMSA_id:13828 Megasphaera cerevisiae str. VTT-E-85230 2.30.3.1.2.564 OTU 2 seqs prokMSA_id:41128 Megasphaera sp. oral clone BS073 prokMSA_id:42721 Megasphaera sp. oral clone CS025 AF287784 2.30.3.1.2.59 OTU 8 seqs prokMSA_id:32378 rumen 2C28d-8 prokMSA_id:32722 rumen 4C28d-7 prokMSA_id:37391 clone p-1740-b3 prokMSA_id:39342 rumen 4C28d-10 prokMSA_id:48207 clone p-1941-s962-3 prokMSA_id:52521 clone p-922-s962-5 prokMSA_id:94802 clone Dpcom136 AY373330 prokMSA_id:95828 clone Dpcom123 AY371262 2.30.3.1.2.761 OTU 3 seqs prokMSA_id:35000 Megasphaera sp. oral clone BB166 prokMSA_id:43739 Anaerococcus geminatus prokMSA_id:68342 Megasphaera sp. oral clone MCE3_141 P1 2.30.3.1.2.771 OTU 1 seq prokMSA_id:13827 Dialister pneumosintes ATCC 33048 2.30.3.1.2.858 OTU 1 seq prokMSA_id:28369 clone HuCB85 2.30.3.1.2.862 OTU 3 seqs prokMSA_id:28862 Anaerosphaera nuciformis strain AIP 49.01 prokMSA_id:38606 Anaerosphaera nuciformis strain AIP 412.00 AF473834 prokMSA_id:74093 Megasphaera sp. oral clone BU057 2.30.3.1.2.863 OTU 9 seqs prokMSA_id:13825 sp. str. SC -5 prokMSA_id:13826 sp. str. SC 3D prokMSA_id:20613 human oral A41 AF201990 prokMSA_id:44531 human oral A40 AF201989 prokMSA_id:61048 clone cadhufec18a06sav AF530347 prokMSA_id:68355 Dialister sp. E2_20 E1 oral isolate prokMSA_id:70158 Dialister sp. oral strain GBA27 prokMSA_id:72316 Dialister sp. oral clone BS095 prokMSA_id:85145 Dialister invisus 2.30.3.1.2.866 OTU 5 seqs prokMSA_id:13823 Veillonella ratti ATCC 17746 prokMSA_id:13824 Veillonella criceti ATCC 17747 prokMSA_id:82021 Veillonella ratti strain ADV4313.2 AY211542 prokMSA_id:96523 Veillonella rodentium AY355139 prokMSA_id:97329 Veillonella ratti AY355138 2.30.3.1.2.940 OTU 12 seqs prokMSA_id:13820 Veillonella dispar DSM 20735 prokMSA_id:13821 Veillonella parvula DSM 2008 . X84005 prokMSA_id:13822 Veillonella atypica DSM 20739 prokMSA_id:21762 Veillonella sp. oral clone AA050 prokMSA_id:25275 Veillonella dispar prokMSA_id:30716 Veillonella parvula prokMSA_id:33416 Veillonella sp. oral clone X042 prokMSA_id:35224 Veillonella atypica prokMSA_id:40553 Veillonella sp. clone BU083 prokMSA_id:54075 clone p-5279-2Wa3 prokMSA_id:55140 clone PIC29 prokMSA_id:95347 Veillonella caviae AY355140 2.30.3.1.3 SPM.PAUCIVORANS_SUBGROUP 38 seqs 2.30.3.1.3.1036 OTU 1 seq prokMSA_id:60600 clone G07 2.30.3.1.3.1064 OTU 2 seqs prokMSA_id:13847 Sporomusa DR1/8 str. DR1/8 prokMSA_id:21147 Sporomusa malonica strain DSM 5090 2.30.3.1.3.275 OTU 1 seq prokMSA_id:79562 clone AKS21 2.30.3.1.3.38 OTU 1 seq prokMSA_id:66919 clone SHA-109 2.30.3.1.3.428 OTU 2 seqs prokMSA_id:66173 clone IIIA-10 prokMSA_id:66174 clone IIIA-1 2.30.3.1.3.449 OTU 1 seq prokMSA_id:13839 Acetonema longum str. APO-1 DSM 6540 2.30.3.1.3.47 OTU 1 seq prokMSA_id:16834 from anoxic bulk soil clone BSV90 2.30.3.1.3.474 OTU 1 seq prokMSA_id:13840 clone SJA-29 2.30.3.1.3.476 OTU 1 seq prokMSA_id:13841 clone SJA-84 2.30.3.1.3.477 OTU 1 seq prokMSA_id:13843 clone SJA-143 2.30.3.1.3.498 OTU 1 seq prokMSA_id:13849 clone P47 2.30.3.1.3.511 OTU 1 seq prokMSA_id:25868 Sporomusa sphaeroides strain DSM 2875 2.30.3.1.3.528 OTU 1 seq prokMSA_id:82350 clone ZZ12C4 2.30.3.1.3.529 OTU 3 seqs prokMSA_id:13844 Sporomusa DR6 str. DR6. Y17760 prokMSA_id:13846 Sporomusa DR15 str. DR15. Y17762 prokMSA_id:36727 from anoxic bulk soil clone BSV16 2.30.3.1.3.534 OTU 2 seqs prokMSA_id:66181 clone IIA-26 prokMSA_id:72034 clone IIIB-2 2.30.3.1.3.561 OTU 1 seq prokMSA_id:20905 AA56 2.30.3.1.3.579 OTU 5 seqs prokMSA_id:13838 Anaerovibrio burkinabensis DSM 6283 prokMSA_id:13851 Anaeromusa acidaminophila DSM 3853. AF071415 prokMSA_id:33760 TCE33 prokMSA_id:66172 clone IIIA-2 AJ488092 prokMSA_id:66184 clone IB-27 2.30.3.1.3.614 OTU 1 seq prokMSA_id:72075 AA01 2.30.3.1.3.623 OTU 2 seqs prokMSA_id:13845 Sporomusa DR5 str. DR5. Y17761 prokMSA_id:23304 Sporomusa ovata strain DSM 2662 2.30.3.1.3.71 OTU 1 seq prokMSA_id:81047 clone KD2-97 2.30.3.1.3.77 OTU 1 seq prokMSA_id:27433 thermal soil clone YNPFFP9 2.30.3.1.3.798 OTU 1 seq prokMSA_id:13837 Anaerovibrio glycerini DSM 5192 2.30.3.1.3.825 OTU 1 seq prokMSA_id:13850 str. SB90 2.30.3.1.3.856 OTU 1 seq prokMSA_id:31050 Sporomusa acidovorans strain DSM 3132 2.30.3.1.3.932 OTU 2 seqs prokMSA_id:31092 Propionispora vibrioides isolate FKBS1 prokMSA_id:77768 Propionispora hippei clone 5 2.30.3.1.3.943 OTU 1 seq prokMSA_id:26966 spore-forming 169 2.30.3.1.3.992 OTU 1 seq prokMSA_id:34224 from anoxic bulk soil clone BSV43 2.30.3.1.4 PHA.FAECIUM_SUBGROUP 37 seqs 2.30.3.1.4.161 OTU 3 seqs prokMSA_id:13858 Phascolarctobacterium faecium ACM 3679 prokMSA_id:13859 Phascolarctobacterium faecium ACM 3681 prokMSA_id:13860 Phascolarctobacterium faecium ACM 3680 2.30.3.1.4.163 OTU 13 seqs prokMSA_id:13856 clone RFN24 prokMSA_id:82841 rumen clone BS24 AY244975 prokMSA_id:83021 rumen clone BS18 AY244972 prokMSA_id:84160 rumen clone BF11 prokMSA_id:84451 rumen clone BS10 prokMSA_id:84795 rumen clone BS2 prokMSA_id:85301 rumen clone BS20 prokMSA_id:85413 rumen clone BF7 prokMSA_id:85534 rumen clone BS8 prokMSA_id:85652 rumen clone BF14 prokMSA_id:85821 rumen clone BS15 prokMSA_id:86208 rumen clone BF10 prokMSA_id:86657 rumen clone BF9 2.30.3.1.4.167 OTU 2 seqs prokMSA_id:13852 Acidaminococcus fermentans str. VR4 DSM 20731 prokMSA_id:13853 Acidaminococcus fermentans str. AO 2.30.3.1.4.257 OTU 1 seq prokMSA_id:20105 Acidaminococcus sp. ADV 255.99 2.30.3.1.4.298 OTU 3 seqs prokMSA_id:13862 Succinispira mobilis str. 19gly1. AJ006980 prokMSA_id:66171 clone IIIA-4 prokMSA_id:66179 clone IIA-29 2.30.3.1.4.302 OTU 1 seq prokMSA_id:33044 clone p-2464-18B5 2.30.3.1.4.466 OTU 1 seq prokMSA_id:45688 clone p-286-a3 2.30.3.1.4.599 OTU 1 seq prokMSA_id:29289 mle1-9 2.30.3.1.4.708 OTU 2 seqs prokMSA_id:22697 rumen 4C28d-16 prokMSA_id:28188 rumen 3C28d-10 2.30.3.1.4.778 OTU 3 seqs prokMSA_id:40064 ckncm198-F4M.1B9 prokMSA_id:69824 adhufec395 AF132234 prokMSA_id:73552 clone cadhufec079h7 AF530309 2.30.3.1.4.810 OTU 3 seqs prokMSA_id:26270 equine intestinal sp. PL25 clone PL25 prokMSA_id:29062 equine intestinal sp. CW09 clone CW09 prokMSA_id:35430 equine intestinal sp. CL27 clone CL27 2.30.3.1.4.873 OTU 1 seq prokMSA_id:25947 clone p-3420-SwA2 2.30.3.1.4.956 OTU 1 seq prokMSA_id:13861 clone vadinHB04 2.30.3.1.4.981 OTU 2 seqs prokMSA_id:32193 O16B1 prokMSA_id:70334 O18G7 2.30.3.2 HELIOBACTERIUM_GROUP 129 seqs 2.30.3.2.1 DFI.DEHALOGENANS_SUBGROUP 93 seqs 2.30.3.2.1.1010 OTU 1 seq prokMSA_id:38434 Desulfosporosinus sp. ML7-SRB15 strain ML7-SRB15 2.30.3.2.1.1023 OTU 1 seq prokMSA_id:13873 clone WCHB1-84 2.30.3.2.1.1030 OTU 1 seq prokMSA_id:13879 clone SJA-118 2.30.3.2.1.107 OTU 1 seq prokMSA_id:29453 clone p-2785-24E5 2.30.3.2.1.1067 OTU 1 seq prokMSA_id:13880 clone SJA-173 2.30.3.2.1.1074 OTU 1 seq prokMSA_id:23528 Thermophilic JA2 2.30.3.2.1.1083 OTU 1 seq prokMSA_id:18032 Symbiobacterium sp. HN9 2.30.3.2.1.1084 OTU 1 seq prokMSA_id:42236 ckncm213-F4M.1G2 2.30.3.2.1.128 OTU 1 seq prokMSA_id:36687 soil clone S102 2.30.3.2.1.132 OTU 3 seqs prokMSA_id:77725 Clostridiaceae clone:Rs-J36 prokMSA_id:78152 Clostridiaceae clone:Rs-H17 prokMSA_id:78210 Clostridiaceae clone:Rs-K66 2.30.3.2.1.141 OTU 1 seq prokMSA_id:19343 clone RB9C2 2.30.3.2.1.177 OTU 1 seq prokMSA_id:36188 Desulfosporosinus sp. PFB 2.30.3.2.1.206 OTU 1 seq prokMSA_id:78366 Clostridiaceae clone:Rs-P50 2.30.3.2.1.207 OTU 1 seq prokMSA_id:40595 from anoxic bulk soil clone BSV24 2.30.3.2.1.212 OTU 1 seq prokMSA_id:46485 Desulfitobacterium sp. Y51 2.30.3.2.1.213 OTU 1 seq prokMSA_id:56444 clone SHD-17 2.30.3.2.1.228 OTU 1 seq prokMSA_id:13900 Desulfitobacterium sp. str. PCE1 2.30.3.2.1.242 OTU 15 seqs prokMSA_id:13876 Desulfosporosinus T2 str. T2 prokMSA_id:13884 Desulfosporosinus 5apy str. 5apy prokMSA_id:13886 Desulfosporosinus S6 str. S6. AF076245 prokMSA_id:13888 Desulfosporosinus S8 str. S8 prokMSA_id:13889 Desulfosporosinus S5 str. S5. AF076248 prokMSA_id:13890 Desulfosporosinus orientis DSM 8344 prokMSA_id:25249 Desulfosporosinus sp. P3 prokMSA_id:59920 low G+C Gram-positive clone ccs270 prokMSA_id:63748 Desulfosporosinus orientis strain DSMZ 7493 prokMSA_id:70866 Desulfosporosinus sp. LauIII isolate LauIII prokMSA_id:72325 Desulfosporosinus sp. 44a-T3a prokMSA_id:81121 clone ZZ9C1 prokMSA_id:81460 clone ZZ14C3 prokMSA_id:95633 Desulfosporosinus idahoense strain A10 AJ582756 prokMSA_id:96132 Desulfosporosinus limneticum strain STP12 AJ582757 2.30.3.2.1.244 OTU 1 seq prokMSA_id:63100 clone MB-C2-152 2.30.3.2.1.252 OTU 3 seqs prokMSA_id:77865 Clostridiaceae clone:Rs-A28 prokMSA_id:77906 Clostridiaceae clone:Rs-D61 prokMSA_id:78141 Clostridiaceae clone:Rs-D04 2.30.3.2.1.263 OTU 1 seq prokMSA_id:13882 str. Boom-3m-02 2.30.3.2.1.264 OTU 1 seq prokMSA_id:13883 Desulfosporosinus Blif str. Blif 2.30.3.2.1.270 OTU 4 seqs prokMSA_id:26455 rape rhizosphere wr0198 AJ295559 prokMSA_id:63113 clone MB-B2-105 prokMSA_id:89473 HOClCi9 AY328558 prokMSA_id:98258 clone D5 AY375144 2.30.3.2.1.300 OTU 1 seq prokMSA_id:81849 clone ZZ12C8 2.30.3.2.1.301 OTU 1 seq prokMSA_id:46259 equine intestinal sp. CL16 clone CL16 2.30.3.2.1.31 OTU 10 seqs prokMSA_id:13896 clone SJA-19 prokMSA_id:13897 clone SJA-47 prokMSA_id:13898 Dehalobacter restrictus str. PER-K23 prokMSA_id:13899 Dehalobacter restrictus str. TEA prokMSA_id:22205 clone d025 prokMSA_id:29474 clone d154 prokMSA_id:65484 Dehalobacter sp. SHD-11 prokMSA_id:66193 clone IA-18 prokMSA_id:69301 Dehalobacter sp. TCA1 prokMSA_id:72453 SHA-67 2.30.3.2.1.32 OTU 1 seq prokMSA_id:74312 clone P3IB-3 2.30.3.2.1.337 OTU 1 seq prokMSA_id:26918 clone d011 2.30.3.2.1.36 OTU 3 seqs prokMSA_id:13877 Desulfosporosinus S10 str. S10 prokMSA_id:13885 Desulfosporosinus S7 str. S7. AF076244 prokMSA_id:63750 Desulfotomaculum auripigmentum strain DSMZ 13351 2.30.3.2.1.39 OTU 1 seq prokMSA_id:63299 clone RCP2-71 2.30.3.2.1.454 OTU 1 seq prokMSA_id:29646 rumen 3C0d-20 2.30.3.2.1.460 OTU 1 seq prokMSA_id:13893 Peptococcus niger 2.30.3.2.1.463 OTU 1 seq prokMSA_id:13894 Syntrophobotulus glycolicus str. FlGlyR 2.30.3.2.1.471 OTU 1 seq prokMSA_id:46527 mle1-12 2.30.3.2.1.49 OTU 3 seqs prokMSA_id:33994 clone GOUTB3 prokMSA_id:50913 clone GOUTA9 prokMSA_id:51930 low G+C Gram-positive clone 36-28 2.30.3.2.1.562 OTU 2 seqs prokMSA_id:42091 Peptococcus-like sp. oral clone I070 prokMSA_id:68340 Peptococcus sp. oral clone MCE10_265 E1 2.30.3.2.1.602 OTU 1 seq prokMSA_id:61053 clone cadhufec17f05sav 2.30.3.2.1.649 OTU 1 seq prokMSA_id:23926 clone:BCf10-04 2.30.3.2.1.669 OTU 1 seq prokMSA_id:28888 Desulfitobacterium metallireducens 2.30.3.2.1.749 OTU 1 seq prokMSA_id:46816 clone Car112fc 2.30.3.2.1.795 OTU 1 seq prokMSA_id:50658 Desulfitobacterium sp. Viet-1 2.30.3.2.1.800 OTU 1 seq prokMSA_id:70151 E1-K16 2.30.3.2.1.816 OTU 5 seqs prokMSA_id:13863 Desulfitobacterium frappieri str. PCP-1 prokMSA_id:13867 Desulfitobacterium sp prokMSA_id:13902 Desulfitobacterium sp. str. TCE1 prokMSA_id:45375 Desulfitobacterium frappieri strain DP7 prokMSA_id:72154 Desulfitobacterium frappieri strain G2 2.30.3.2.1.832 OTU 2 seqs prokMSA_id:13865 Desulfitobacterium chlororespirans str. Co23 prokMSA_id:13901 Desulfitobacterium hafniense str. DCB-2 2.30.3.2.1.845 OTU 1 seq prokMSA_id:17148 species isolate Boom-3m-05 2.30.3.2.1.853 OTU 1 seq prokMSA_id:26036 clone P3IB-51 2.30.3.2.1.898 OTU 1 seq prokMSA_id:13870 Desulfosporosinus orientis str. Singapore I DSM 765 2.30.3.2.1.909 OTU 1 seq prokMSA_id:13872 clone WCHB1-77 2.30.3.2.1.926 OTU 2 seqs prokMSA_id:82915 clone:ALU12 prokMSA_id:86338 clone:AHU17 2.30.3.2.1.96 OTU 1 seq prokMSA_id:71962 clone GIF4 2.30.3.2.1.972 OTU 1 seq prokMSA_id:13866 clone RFN65 2.30.3.2.1.976 OTU 1 seq prokMSA_id:20587 Desulfosporosinus sp. P1 2.30.3.2.2 DFM.RUMINIS_SUBGROUP 17 seqs 2.30.3.2.2.10 OTU 2 seqs prokMSA_id:27610 clone clB02 prokMSA_id:29529 clone clI20 2.30.3.2.2.185 OTU 2 seqs prokMSA_id:20582 Desulfotomaculum sp. DEM-KMe98-6 prokMSA_id:35107 Desulfotomaculum sp. DEM-KMe98-10 2.30.3.2.2.198 OTU 2 seqs prokMSA_id:60009 Pelotomaculum sp. JT prokMSA_id:60014 clone:JI 2.30.3.2.2.233 OTU 1 seq prokMSA_id:13904 Desulfotomaculum ruminis str. DL DSM 2154 2.30.3.2.2.245 OTU 1 seq prokMSA_id:13906 unnamed organism 2.30.3.2.2.279 OTU 2 seqs prokMSA_id:13905 clone WCHB1-20 prokMSA_id:66938 clone SHA-86 2.30.3.2.2.290 OTU 1 seq prokMSA_id:41028 low G+C Gram-positive clone 36-20 2.30.3.2.2.310 OTU 1 seq prokMSA_id:13911 Desulfotomaculum nigrificans 2.30.3.2.2.313 OTU 1 seq prokMSA_id:13912 Desulfotomaculum sp. DSM 7440 2.30.3.2.2.332 OTU 1 seq prokMSA_id:13914 Desulfotomaculum reducens str. MI-1 2.30.3.2.2.339 OTU 1 seq prokMSA_id:13918 Desulfotomaculum putei SMCC W463 2.30.3.2.2.522 OTU 1 seq prokMSA_id:60013 clone:UT-1 2.30.3.2.2.894 OTU 1 seq prokMSA_id:47304 low G+C Gram-positive clone 36-22 2.30.3.2.3 HEL.CHLORUM_SUBGROUP 19 seqs 2.30.3.2.3.318 OTU 1 seq prokMSA_id:73860 Heliobacterium sulfidophilum complete 2.30.3.2.3.380 OTU 1 seq prokMSA_id:13923 Heliobacterium chlorum ATCC 35205 2.30.3.2.3.383 OTU 1 seq prokMSA_id:13924 Heliorestis daurensis str. BT-H1 2.30.3.2.3.61 OTU 16 seqs prokMSA_id:28304 Symbiobacterium sp. YK88 AB052369 prokMSA_id:29246 Symbiobacterium sp. MN128 AB052380 prokMSA_id:29828 Symbiobacterium sp. MO16 AB052371 prokMSA_id:31811 Symbiobacterium sp. MO87 AB052368 prokMSA_id:32767 Symbiobacterium sp. MO32 AB052379 prokMSA_id:33425 Symbiobacterium sp. HN15 AB052378 prokMSA_id:35473 Symbiobacterium sp. MO31 AB052381 prokMSA_id:38028 Symbiobacterium sp. MN5 prokMSA_id:42424 Symbiobacterium sp. MN117 AB052385 prokMSA_id:42519 Symbiobacterium sp. MO33 AB052373 prokMSA_id:46046 Symbiobacterium sp. MO22 AB052375 prokMSA_id:47548 Symbiobacterium sp. MO17 AB052374 prokMSA_id:48078 Symbiobacterium sp. YK63 AB052370 prokMSA_id:48690 Symbiobacterium sp. YK66 AB052377 prokMSA_id:51749 Symbiobacterium sp. YK1 AB052372 prokMSA_id:54890 Symbiobacterium thermophilum 2.30.3.3 CLOSTRIDIUM_STRAIN_DMC 1 seq 2.30.3.3.397 OTU 1 seq prokMSA_id:13929 Clostridium sp. str. DMC 2.30.4 EUBACTERIUM_AND_RELATIVES 822 seqs 2.30.4.1 C.COCCOIDES_GROUP 584 seqs 2.30.4.1.1 C.XYLANOLYTICUM_SUBGROUP 132 seqs 2.30.4.1.1.2661 OTU 1 seq prokMSA_id:13976 clone RFN27 2.30.4.1.1.2660 OTU 1 seq prokMSA_id:13974 clone RC39 2.30.4.1.1.2692 OTU 1 seq prokMSA_id:13981 clone JW25 2.30.4.1.1.2696 OTU 1 seq prokMSA_id:83271 clone ABLCf11 2.30.4.1.1.2698 OTU 1 seq prokMSA_id:77867 clone:Rs-B88 2.30.4.1.1.2711 OTU 1 seq prokMSA_id:13984 clone 12-128 2.30.4.1.1.2731 OTU 1 seq prokMSA_id:35993 equine intestinal sp. CL25 clone CL25 2.30.4.1.1.2732 OTU 4 seqs prokMSA_id:20244 Butyrate-producing A2-175 prokMSA_id:28767 clone p-373-a3 prokMSA_id:33837 clone p-59-a5 prokMSA_id:54048 clone p-1676-b3 2.30.4.1.1.2746 OTU 1 seq prokMSA_id:33545 equine intestinal sp. DW11 clone DW11 2.30.4.1.1.2747 OTU 2 seqs prokMSA_id:34649 clone p-3075-SwA5 prokMSA_id:47954 adhufec405 2.30.4.1.1.2770 OTU 2 seqs prokMSA_id:38358 rumen 3C28d-6 prokMSA_id:45716 rumen 4C28d-22 2.30.4.1.1.2779 OTU 2 seqs prokMSA_id:21714 equine intestinal sp. MW05 clone MW05 prokMSA_id:38154 equine intestinal sp. DL04 clone DL04 2.30.4.1.1.2787 OTU 2 seqs prokMSA_id:13936 clone RC7 prokMSA_id:26280 Rumen RC7r-54 2.30.4.1.1.2804 OTU 1 seq prokMSA_id:13971 Clostridium sp. str. DR7 2.30.4.1.1.2806 OTU 1 seq prokMSA_id:36330 clone p-195-o5 2.30.4.1.1.2808 OTU 4 seqs prokMSA_id:13979 Clostridium clostridiiforme ATCC 25537 prokMSA_id:13985 Clostridium sp. str. DR6A prokMSA_id:13986 Clostridium sp. str. Lip1 DSM 10643 prokMSA_id:83226 Clostridium boltei strain 16351 2.30.4.1.1.2812 OTU 1 seq prokMSA_id:28175 clone:BCf1-20 2.30.4.1.1.2817 OTU 1 seq prokMSA_id:20690 fiber-attaching rumen clone:SY19 2.30.4.1.1.2821 OTU 1 seq prokMSA_id:43700 clone:BCf1-16 2.30.4.1.1.2839 OTU 1 seq prokMSA_id:51880 clone L10-4 2.30.4.1.1.2835 OTU 1 seq prokMSA_id:48871 equine intestinal sp. CW14 clone CW14 2.30.4.1.1.2842 OTU 1 seq prokMSA_id:25210 clone p-2489-18B5 2.30.4.1.1.2849 OTU 6 seqs prokMSA_id:13934 Butyrivibrio fibrisolvens str. H17cSA prokMSA_id:13949 Butyrivibrio fibrisolvens NCDO 2435 prokMSA_id:13952 Butyrivibrio fibrisolvens str. OB251 prokMSA_id:48290 Butyrivibrio fibrisolvens strain OB247 prokMSA_id:48412 Butyrivibrio fibrisolvens strain OB237 prokMSA_id:74571 Butyrivibrio fibrisolvens strain OB249 2.30.4.1.1.2854 OTU 1 seq prokMSA_id:19529 isolate HuCC34 2.30.4.1.1.2858 OTU 1 seq prokMSA_id:20799 clone p-2529-18B5 2.30.4.1.1.2862 OTU 1 seq prokMSA_id:13939 clone RCP17 2.30.4.1.1.2860 OTU 1 seq prokMSA_id:46138 equine intestinal sp. DW20 clone DW20 2.30.4.1.1.2865 OTU 1 seq prokMSA_id:53640 clone p-2592-9F5 2.30.4.1.1.2871 OTU 1 seq prokMSA_id:21065 equine intestinal sp. ML12 clone ML12 2.30.4.1.1.2874 OTU 1 seq prokMSA_id:50166 clone p-389-o3 2.30.4.1.1.2878 OTU 1 seq prokMSA_id:13940 clone RFP4 2.30.4.1.1.2879 OTU 1 seq prokMSA_id:13941 clone JW5 2.30.4.1.1.2881 OTU 1 seq prokMSA_id:13942 clone JW28 2.30.4.1.1.2886 OTU 1 seq prokMSA_id:13943 clone 30-2 2.30.4.1.1.2884 OTU 1 seq prokMSA_id:37723 rumen 3C3d-17 2.30.4.1.1.2888 OTU 1 seq prokMSA_id:13945 Butyrivibrio fibrisolvens NCDO 2222 2.30.4.1.1.2891 OTU 1 seq prokMSA_id:49916 clone p-4459-6Wb3 2.30.4.1.1.2890 OTU 1 seq prokMSA_id:13947 Butyrivibrio fibrisolvens NCDO 2432 2.30.4.1.1.2911 OTU 1 seq prokMSA_id:22771 clone p-214-o5 2.30.4.1.1.2929 OTU 1 seq prokMSA_id:85225 clone ABLCf20 2.30.4.1.1.2961 OTU 1 seq prokMSA_id:77702 clone:Rs-F92 2.30.4.1.1.2966 OTU 3 seqs prokMSA_id:20886 equine intestinal sp. CL04 clone CL04 AJ408039 prokMSA_id:23089 equine intestinal sp. CW08 clone CW08 AJ408078 prokMSA_id:29915 equine intestinal sp. DW06 clone DW06 2.30.4.1.1.2976 OTU 1 seq prokMSA_id:13933 Clostridium proteoclasticum str. B316 ATCC 51982 2.30.4.1.1.2995 OTU 1 seq prokMSA_id:50499 clone p-4162-6Wa5 2.30.4.1.1.2998 OTU 1 seq prokMSA_id:17500 equine intestinal sp. PL07 clone PL07 2.30.4.1.1.3027 OTU 2 seqs prokMSA_id:13965 Clostridium aerotolerans DSM 5434 prokMSA_id:13973 Clostridium xylanolyticum ATCC 49623 2.30.4.1.1.3030 OTU 2 seqs prokMSA_id:79158 clone GG13 prokMSA_id:79513 clone GG15 2.30.4.1.1.3032 OTU 3 seqs prokMSA_id:24781 clone HuCB40 prokMSA_id:33850 adhufec406 prokMSA_id:49141 clone p-355-a3 2.30.4.1.1.3037 OTU 1 seq prokMSA_id:30277 equine intestinal sp. ML16 clone ML16 2.30.4.1.1.3043 OTU 1 seq prokMSA_id:45129 ckncm174-F3M.1E3 2.30.4.1.1.3042 OTU 1 seq prokMSA_id:68844 clone p-2876-6C5 2.30.4.1.1.3058 OTU 1 seq prokMSA_id:29965 Clostridium proteoclasticum strain UC 142 2.30.4.1.1.3056 OTU 1 seq prokMSA_id:49346 equine intestinal sp. DL03 clone DL03 2.30.4.1.1.3063 OTU 1 seq prokMSA_id:52289 Clostridium algidixylanolyticum 2.30.4.1.1.3066 OTU 12 seqs prokMSA_id:13958 Desulfotomaculum guttoideum str. 50 DSM 4024 prokMSA_id:13961 Clostridium sp. str. DR6B prokMSA_id:13962 Clostridium sp. str. LIP5. Y12289 prokMSA_id:13963 Clostridium methoxybenzovorans str. SR3 DSM 12182 prokMSA_id:17743 Clostridium celerecrescens clone IrT-JG1-12 prokMSA_id:26602 Clostridium indolis strain DSM 755 prokMSA_id:39305 ZF1 prokMSA_id:52311 Clostridium saccharolyticum strain DSM 2544 prokMSA_id:70424 Clostridium sphenoides prokMSA_id:85342 Clostridium sp. CITR8 prokMSA_id:85783 Clostridium sp. TDO prokMSA_id:88374 Clostridium sp. ArC5 AF443594 2.30.4.1.1.3064 OTU 1 seq prokMSA_id:32108 equine intestinal sp. CL12 clone CL12 2.30.4.1.1.3079 OTU 1 seq prokMSA_id:29237 equine intestinal sp. DL18 clone DL18 2.30.4.1.1.3087 OTU 8 seqs prokMSA_id:13935 clone RC3 prokMSA_id:13937 clone RC22 prokMSA_id:13938 clone RCP5 prokMSA_id:13944 clone RFN13 prokMSA_id:13946 Butyrivibrio fibrisolvens NCDO 2398 prokMSA_id:13950 Butyrivibrio fibrisolvens str. Bu 43 prokMSA_id:41384 Butyrivibrio hungatei strain JK 615 prokMSA_id:98638 Butyrivibrio hungatei strain Su6 AY178635 2.30.4.1.1.3088 OTU 2 seqs prokMSA_id:13957 Clostridium sphenoides ATCC 19403 prokMSA_id:72750 Clostridium sp. HAAP-2 2.30.4.1.1.3100 OTU 1 seq prokMSA_id:37999 equine intestinal sp. PL05 clone PL05 2.30.4.1.1.3102 OTU 1 seq prokMSA_id:18619 clone p-662-a5 2.30.4.1.1.3111 OTU 2 seqs prokMSA_id:21995 rumen 5C3d-13 prokMSA_id:27777 rumen 6C3d-11 2.30.4.1.1.3132 OTU 1 seq prokMSA_id:41158 rumen 3C3d-19 2.30.4.1.1.3137 OTU 1 seq prokMSA_id:13955 clone adhufec13.25 2.30.4.1.1.3136 OTU 1 seq prokMSA_id:13951 TW2 str. TW2 2.30.4.1.1.3138 OTU 1 seq prokMSA_id:24175 clone p-5263-4Wb5 2.30.4.1.1.3142 OTU 1 seq prokMSA_id:28123 CCAJG151 2.30.4.1.1.3148 OTU 1 seq prokMSA_id:42492 clone p-228-o5 2.30.4.1.1.3154 OTU 1 seq prokMSA_id:52933 Firmicutes sp. oral clone CK030 2.30.4.1.1.3152 OTU 1 seq prokMSA_id:49856 sp. oral clone DO016 2.30.4.1.1.3160 OTU 1 seq prokMSA_id:23380 rumen 3C0d-9 2.30.4.1.1.3168 OTU 1 seq prokMSA_id:69988 clone p-386-o3 2.30.4.1.1.3167 OTU 3 seqs prokMSA_id:13982 clone 12-74 prokMSA_id:36565 rumen 3C0d-1 prokMSA_id:52499 rumen 5C0d-19 AB034049 2.30.4.1.1.3174 OTU 1 seq prokMSA_id:28618 Firmicutes sp. oral clone BB124 2.30.4.1.1.3191 OTU 1 seq prokMSA_id:19729 rumen 4C0d-5 2.30.4.1.1.3195 OTU 1 seq prokMSA_id:13960 clone RFN18 2.30.4.1.1.3199 OTU 1 seq prokMSA_id:43789 Coprococcus catus 2.30.4.1.1.3209 OTU 1 seq prokMSA_id:24389 fiber-attaching rumen clone:SY16 2.30.4.1.1.3213 OTU 1 seq prokMSA_id:13967 clone RC28 2.30.4.1.1.3211 OTU 1 seq prokMSA_id:13966 clone RC20 2.30.4.1.1.3221 OTU 1 seq prokMSA_id:13968 clone RCP10 2.30.4.1.1.3223 OTU 1 seq prokMSA_id:44923 clone p-619-a5 2.30.4.1.1.3236 OTU 2 seqs prokMSA_id:55615 Lachnospiraceae oral clone MCE10_236 E5 prokMSA_id:70198 Firmicutes sp. oral strain FTB41 2.30.4.1.1.3239 OTU 4 seqs prokMSA_id:13930 Butyrivibrio fibrisolvens str. D1 prokMSA_id:13931 Butyrivibrio fibrisolvens NCDO 2221 prokMSA_id:37898 Butyrivibrio fibrisolvens strain C211 prokMSA_id:46567 Butyrivibrio fibrisolvens strain WV1 2.30.4.1.1.3243 OTU 1 seq prokMSA_id:13970 clone RFN81 2.30.4.1.2 RUC.HANSENII_SUBGROUP 81 seqs 2.30.4.1.2.2667 OTU 1 seq prokMSA_id:27207 ckncm148-F1M.2F9 2.30.4.1.2.2688 OTU 1 seq prokMSA_id:30215 equine intestinal sp. ML37 clone ML37 2.30.4.1.2.2702 OTU 1 seq prokMSA_id:25469 adhufec40 2.30.4.1.2.2730 OTU 1 seq prokMSA_id:35055 equine intestinal sp. PW07 clone PW07 2.30.4.1.2.2733 OTU 1 seq prokMSA_id:77371 A29 2.30.4.1.2.2749 OTU 1 seq prokMSA_id:50625 equine intestinal sp. PL31 clone PL31 2.30.4.1.2.2748 OTU 1 seq prokMSA_id:35314 equine intestinal sp. DL33 clone DL33 2.30.4.1.2.2754 OTU 1 seq prokMSA_id:77466 A22 2.30.4.1.2.2769 OTU 4 seqs prokMSA_id:36592 equine intestinal sp. PW04 clone PW04 AJ408250 prokMSA_id:37099 equine intestinal sp. MW11 clone MW11 AJ408198 prokMSA_id:40098 equine intestinal sp. PL37 clone PL37 prokMSA_id:52617 equine intestinal sp. CW03 clone CW03 2.30.4.1.2.2784 OTU 2 seqs prokMSA_id:18687 clone p-2000-s959-5 prokMSA_id:43588 clone HuCB12 2.30.4.1.2.2798 OTU 2 seqs prokMSA_id:13995 Ruminococcus schinkii str. B DSM 10518 prokMSA_id:13996 Ruminococcus sp. str. Bie 41 2.30.4.1.2.2803 OTU 1 seq prokMSA_id:54116 clone p-2432-55G5 2.30.4.1.2.2802 OTU 1 seq prokMSA_id:71965 clone p-2624-9F5 2.30.4.1.2.2831 OTU 1 seq prokMSA_id:71830 A20 complete 2.30.4.1.2.2840 OTU 1 seq prokMSA_id:39770 clone L7-6 2.30.4.1.2.2845 OTU 1 seq prokMSA_id:36647 clone p-247-o5 2.30.4.1.2.2853 OTU 1 seq prokMSA_id:28275 equine intestinal sp. CL15 clone CL15 2.30.4.1.2.2867 OTU 1 seq prokMSA_id:39208 equine intestinal clone:YT15 2.30.4.1.2.2873 OTU 1 seq prokMSA_id:30968 rumen 6C3d-13 2.30.4.1.2.2872 OTU 1 seq prokMSA_id:30895 GA36 2.30.4.1.2.2877 OTU 1 seq prokMSA_id:13988 cellulosolvens ATCC 43171 2.30.4.1.2.2883 OTU 1 seq prokMSA_id:28901 rumen 4C3d-8 2.30.4.1.2.2889 OTU 1 seq prokMSA_id:49915 equine intestinal sp. ML13 clone ML13 2.30.4.1.2.2893 OTU 12 seqs prokMSA_id:13989 Ruminococcus obeum prokMSA_id:13993 Ruminococcus obeum ATCC 29174 prokMSA_id:38418 clone p-60-a5 prokMSA_id:40507 clone p-1977-s962-5 prokMSA_id:58011 clone:C-86 prokMSA_id:61089 clone cadhufec028h7 AF530301 prokMSA_id:73388 mpn-isolate group 19 prokMSA_id:81645 Ruminococcus obeum clone 1-4 prokMSA_id:92205 clone DONOR_30 AY343314 prokMSA_id:92538 clone DONOR_31 AY343315 prokMSA_id:92961 clone DONOR_81 AY343250 prokMSA_id:97679 Clostridium sp. cTPY-17 complete AY239462 2.30.4.1.2.2901 OTU 1 seq prokMSA_id:72420 adhufec52 2.30.4.1.2.2899 OTU 1 seq prokMSA_id:18024 equine intestinal sp. MW04 clone MW04 2.30.4.1.2.2907 OTU 1 seq prokMSA_id:31735 clone p-192-o5 2.30.4.1.2.2906 OTU 1 seq prokMSA_id:13998 clone RC25 2.30.4.1.2.2903 OTU 1 seq prokMSA_id:13992 clone adhufec35.25 2.30.4.1.2.2905 OTU 1 seq prokMSA_id:13997 Ruminococcus hydrogenotrophicus str. S5a33 DSM 10507 2.30.4.1.2.2908 OTU 1 seq prokMSA_id:13999 clone RC34 2.30.4.1.2.2910 OTU 1 seq prokMSA_id:18897 ckncm164-F3M.1B7 2.30.4.1.2.2920 OTU 1 seq prokMSA_id:48088 clone p-3663-18B3 2.30.4.1.2.2918 OTU 1 seq prokMSA_id:52106 Firmicutes sp. oral clone CH017 2.30.4.1.2.2928 OTU 1 seq prokMSA_id:77537 A17 2.30.4.1.2.2937 OTU 1 seq prokMSA_id:52321 clone p-2482-18B5 2.30.4.1.2.2949 OTU 1 seq prokMSA_id:16475 clone HuCB25 2.30.4.1.2.2955 OTU 1 seq prokMSA_id:71824 human infant L127dB 2.30.4.1.2.2959 OTU 1 seq prokMSA_id:52043 rumen 3C28d-5 2.30.4.1.2.2957 OTU 1 seq prokMSA_id:22899 Ruminococcus sp. bln9 2.30.4.1.2.2987 OTU 1 seq prokMSA_id:77785 clone:Rs-H32 2.30.4.1.2.3045 OTU 1 seq prokMSA_id:28218 clone HuCA5 2.30.4.1.2.3047 OTU 1 seq prokMSA_id:33906 clone HuCA26 2.30.4.1.2.3065 OTU 2 seqs prokMSA_id:25317 Syntrophococcus sucromutans strain DSM 3224 Y18191 prokMSA_id:41867 Syntrophococcus sucromutans 2.30.4.1.2.3082 OTU 1 seq prokMSA_id:73902 ckncm241-c5d5 2.30.4.1.2.3086 OTU 1 seq prokMSA_id:51634 clone p-2746-24E5 2.30.4.1.2.3085 OTU 1 seq prokMSA_id:69958 clone HuCA19 2.30.4.1.2.3089 OTU 5 seqs prokMSA_id:35844 mpn-isolate group 18 prokMSA_id:40035 adhufec171 prokMSA_id:40308 clone HuCA2 prokMSA_id:81152 Ruminococcus obeum clone 1-56 prokMSA_id:81272 Ruminococcus obeum clone 1-33 2.30.4.1.2.3099 OTU 1 seq prokMSA_id:26513 equine intestinal sp. CL23 clone CL23 2.30.4.1.2.3114 OTU 3 seqs prokMSA_id:14000 Ruminococcus productus ATCC 27340 prokMSA_id:14001 Clostridium sp. str. formate prokMSA_id:14007 Ruminococcus productus ATCC 27340 2.30.4.1.2.3141 OTU 1 seq prokMSA_id:36624 clone p-188-o5 2.30.4.1.2.3146 OTU 1 seq prokMSA_id:29867 clone HuCA22 2.30.4.1.2.3143 OTU 1 seq prokMSA_id:29937 rumen 4C28d-24 2.30.4.1.2.3157 OTU 1 seq prokMSA_id:35015 equine intestinal sp. PL26 clone PL26 2.30.4.1.2.3188 OTU 1 seq prokMSA_id:22923 clone p-2465-18B5 2.30.4.1.2.3190 OTU 1 seq prokMSA_id:40639 clone p-2399-55G5 2.30.4.1.2.3207 OTU 1 seq prokMSA_id:50752 equine intestinal sp. DL26 clone DL26 2.30.4.1.2.3224 OTU 1 seq prokMSA_id:42647 equine intestinal sp. ML01 clone ML01 2.30.4.1.3 EUB.SABURREUM_SUBGROUP 8 seqs 2.30.4.1.3.2745 OTU 1 seq prokMSA_id:71649 sp. oral clone BS091 2.30.4.1.3.2837 OTU 1 seq prokMSA_id:22599 sp. oral clone BR088 2.30.4.1.3.2861 OTU 1 seq prokMSA_id:21881 clone p-1616-c5 2.30.4.1.3.2887 OTU 1 seq prokMSA_id:29564 adhufec363 2.30.4.1.3.2971 OTU 1 seq prokMSA_id:14010 Johnsonella ignava ATCC 51276 2.30.4.1.3.3036 OTU 1 seq prokMSA_id:77653 clone:Rs-F27 2.30.4.1.3.3117 OTU 1 seq prokMSA_id:71165 sp. oral clone BU061 2.30.4.1.3.3128 OTU 1 seq prokMSA_id:45298 equine intestinal sp. ML18 clone ML18 2.30.4.1.4 RUC.GNAVUS_SUBGROUP 142 seqs 2.30.4.1.4.2668 OTU 1 seq prokMSA_id:77853 clone:Rs-G40 2.30.4.1.4.2666 OTU 1 seq prokMSA_id:19426 equine intestinal sp. ML36 clone ML36 2.30.4.1.4.2673 OTU 1 seq prokMSA_id:71397 Firmicutes sp. oral clone AO068 2.30.4.1.4.2670 OTU 1 seq prokMSA_id:25534 clone p-2035-s959-5 2.30.4.1.4.2674 OTU 1 seq prokMSA_id:38374 adhufec382 2.30.4.1.4.2677 OTU 1 seq prokMSA_id:38812 clone L10-8 2.30.4.1.4.2678 OTU 1 seq prokMSA_id:71692 mpn-isolate group 22 2.30.4.1.4.2675 OTU 1 seq prokMSA_id:19932 CCAJG116 2.30.4.1.4.2680 OTU 1 seq prokMSA_id:28819 equine intestinal sp. CL29 clone CL29 2.30.4.1.4.2703 OTU 1 seq prokMSA_id:16575 equine intestinal sp. DL05 clone DL05 2.30.4.1.4.2706 OTU 1 seq prokMSA_id:14036 Clostridium nexile DSM 1787 2.30.4.1.4.2713 OTU 1 seq prokMSA_id:46733 equine intestinal sp. DW03 clone DW03 2.30.4.1.4.2720 OTU 1 seq prokMSA_id:27071 clone p-3568-9F3 2.30.4.1.4.2724 OTU 2 seqs prokMSA_id:22721 clone p-265-o5 prokMSA_id:47477 clone p-217-o5 2.30.4.1.4.2726 OTU 1 seq prokMSA_id:27488 clone p-1561-b5 2.30.4.1.4.2739 OTU 2 seqs prokMSA_id:43305 rumen 4C28d-13 prokMSA_id:51916 rumen 4C28d-17 2.30.4.1.4.2753 OTU 5 seqs prokMSA_id:14025 clone A54 prokMSA_id:26562 adhufec217 prokMSA_id:29024 GA21 prokMSA_id:43617 clone HuCA17 prokMSA_id:81160 Clostridium clostridioforme 2.30.4.1.4.2756 OTU 4 seqs prokMSA_id:17208 adhufec150 AF132238 prokMSA_id:21408 rumen 4C28d-8 prokMSA_id:29758 clone HuCA13 prokMSA_id:31554 clone HuCA28 2.30.4.1.4.2757 OTU 2 seqs prokMSA_id:16757 clone L10-3 prokMSA_id:18180 C13-5 2.30.4.1.4.2777 OTU 12 seqs prokMSA_id:27628 clone HuCA8 AJ408964 prokMSA_id:39012 clone HuCB37 prokMSA_id:70219 Butyrate-producing L1-83 prokMSA_id:91132 clone BREC_68 AY338296 prokMSA_id:91209 clone BREC_7 AY338298 prokMSA_id:91289 clone BREC_5 AY338325 prokMSA_id:91333 clone BREC_31 AY338327 prokMSA_id:91345 clone BREC_76 AY338328 prokMSA_id:91590 clone BREC_65 AY338324 prokMSA_id:91785 clone BREC_42 AY338295 prokMSA_id:91814 clone BREC_91 AY338326 prokMSA_id:91835 clone BREC_24 AY338331 2.30.4.1.4.2782 OTU 3 seqs prokMSA_id:33341 clone p-596-a5 prokMSA_id:38044 clone HuCB21 prokMSA_id:77315 A36 2.30.4.1.4.2783 OTU 11 seqs prokMSA_id:19457 Clostridium scindens strain:JCM 10423 36S prokMSA_id:20145 Clostridium scindens strain DSM 5676 prokMSA_id:23008 Clostridium scindens strain:JCM 10422 TH-82 AB020731 prokMSA_id:33482 Clostridium scindens strain:JCM 10418 AB020727 prokMSA_id:37201 Clostridium scindens strain:JCM 10421 I-10 prokMSA_id:39133 Clostridium scindens strain:JCM 10420 M-18 prokMSA_id:45711 Clostridium scindens strain:JCM 6567 AB020883 prokMSA_id:48553 Clostridium scindens strain:JCM 10419 Y-1113 prokMSA_id:50457 Clostridium scindens prokMSA_id:54563 sp. VPI 12708 prokMSA_id:86360 Clostridium scindens 2.30.4.1.4.2793 OTU 1 seq prokMSA_id:71434 mpn-isolate group 24 2.30.4.1.4.2799 OTU 6 seqs prokMSA_id:23277 sp. C124b prokMSA_id:24050 sp. C12b prokMSA_id:35683 Lachnobacterium bovis strain LRC 5357 prokMSA_id:36354 Lachnobacterium bovis strain LRC 5436 prokMSA_id:37865 Lachnobacterium bovis strain LRC 5382 AF298663 prokMSA_id:52262 Lachnobacterium bovis strain LRC 5405 2.30.4.1.4.2810 OTU 1 seq prokMSA_id:25842 clone p-204-o5 2.30.4.1.4.2809 OTU 1 seq prokMSA_id:18550 fiber-attaching rumen clone:SY6 2.30.4.1.4.2818 OTU 1 seq prokMSA_id:46103 clone HuCA23 2.30.4.1.4.2823 OTU 1 seq prokMSA_id:45306 clone L11-5 2.30.4.1.4.2822 OTU 1 seq prokMSA_id:42900 equine intestinal sp. CL34 clone CL34 2.30.4.1.4.2828 OTU 1 seq prokMSA_id:29205 clone p-57-a5 2.30.4.1.4.2826 OTU 1 seq prokMSA_id:22371 clone p-2186-s959-3 2.30.4.1.4.2830 OTU 1 seq prokMSA_id:25934 adhufec68 2.30.4.1.4.2841 OTU 1 seq prokMSA_id:70254 clone p-50-a5 2.30.4.1.4.2847 OTU 1 seq prokMSA_id:42920 equine intestinal sp. MW01 clone MW01 2.30.4.1.4.2855 OTU 1 seq prokMSA_id:34116 equine intestinal sp. PL03 clone PL03 2.30.4.1.4.2856 OTU 1 seq prokMSA_id:30622 clone p-1817-c3 2.30.4.1.4.2863 OTU 1 seq prokMSA_id:49764 ckncm183-F3M.2G2 2.30.4.1.4.2895 OTU 1 seq prokMSA_id:17263 equine intestinal sp. DL38 clone DL38 2.30.4.1.4.2894 OTU 1 seq prokMSA_id:19873 clone p-416-o3 2.30.4.1.4.2897 OTU 1 seq prokMSA_id:52780 equine intestinal sp. DW01 clone DW01 2.30.4.1.4.2902 OTU 3 seqs prokMSA_id:38415 clone L10-9 prokMSA_id:45623 clone L10-2 AJ400265 prokMSA_id:51677 clone L10-21 2.30.4.1.4.2898 OTU 8 seqs prokMSA_id:30495 adhufec420 AF132271 prokMSA_id:38717 Clostridiaceae str. LEMV61 AF446129 prokMSA_id:39079 sp. III-35 prokMSA_id:58016 clone:C-52 AB094156 prokMSA_id:61097 clone cadhufec010h7 AF530297 prokMSA_id:89849 inhufecB-27 AY328371 prokMSA_id:92241 clone DONOR_41 AY343310 prokMSA_id:94532 clone Dpcom147 AY386237 2.30.4.1.4.2923 OTU 1 seq prokMSA_id:77728 candidate division OP11 clone:Rs-J47 2.30.4.1.4.2924 OTU 1 seq prokMSA_id:44883 clone p-2486-18B5 2.30.4.1.4.2938 OTU 1 seq prokMSA_id:32727 clone p-1612-c5 2.30.4.1.4.2963 OTU 1 seq prokMSA_id:33245 TMB39 2.30.4.1.4.2965 OTU 1 seq prokMSA_id:68343 Lachnospiraceae oral clone MCE9_173 E4 2.30.4.1.4.2970 OTU 1 seq prokMSA_id:68346 Lachnospiraceae oral clone MCE7_60 E1 2.30.4.1.4.2968 OTU 1 seq prokMSA_id:43159 clone p-1512-b5 2.30.4.1.4.2974 OTU 1 seq prokMSA_id:14013 clone RFN14 2.30.4.1.4.2975 OTU 1 seq prokMSA_id:14015 clone adhufec80.25 2.30.4.1.4.2981 OTU 1 seq prokMSA_id:14016 Clostridium oroticum ATCC 13619 2.30.4.1.4.2983 OTU 1 seq prokMSA_id:14018 clone X112 2.30.4.1.4.2986 OTU 1 seq prokMSA_id:39350 clone p-2168-959-3 2.30.4.1.4.2999 OTU 1 seq prokMSA_id:34413 clone p-2182-959-3 2.30.4.1.4.3004 OTU 1 seq prokMSA_id:74779 Clostridium hylemonae strain:TN-272 2.30.4.1.4.3005 OTU 1 seq prokMSA_id:41672 ckncm188-F3M.1H3 2.30.4.1.4.3007 OTU 1 seq prokMSA_id:40482 Clostridiaceae str. LEMV78 2.30.4.1.4.3017 OTU 1 seq prokMSA_id:78204 clone:Rs-D48 2.30.4.1.4.3028 OTU 2 seqs prokMSA_id:14012 Ruminococcus torques ATCC 27756 prokMSA_id:38313 clone HuCB10 2.30.4.1.4.3070 OTU 1 seq prokMSA_id:37325 equine intestinal sp. DL37 clone DL37 2.30.4.1.4.3076 OTU 7 seqs prokMSA_id:14017 fissicatena DSM 3598 . NONE prokMSA_id:16544 clone p-44-a5 prokMSA_id:18972 Butyrate-producing A2-231 AJ270484 prokMSA_id:24546 Clostridium leptum prokMSA_id:35150 Clostridium hylemonae strain:TN-271 prokMSA_id:46947 clone p-2561-9F5 prokMSA_id:81063 Clostridium nexile 2.30.4.1.4.3091 OTU 1 seq prokMSA_id:50105 clone p-2195-s959-3 2.30.4.1.4.3105 OTU 1 seq prokMSA_id:34466 Firmicutes sp. oral clone CK051 2.30.4.1.4.3116 OTU 1 seq prokMSA_id:50579 equine intestinal clone:YT29 2.30.4.1.4.3120 OTU 1 seq prokMSA_id:44560 clone p-196-o5 2.30.4.1.4.3118 OTU 1 seq prokMSA_id:36611 clone p-3022-SwA5 2.30.4.1.4.3147 OTU 1 seq prokMSA_id:35682 CCAJG140 2.30.4.1.4.3159 OTU 1 seq prokMSA_id:30334 Parasporobacterium paucivorans strain SYR1 2.30.4.1.4.3163 OTU 1 seq prokMSA_id:17494 Clostridium fimetarium 2.30.4.1.4.3166 OTU 1 seq prokMSA_id:24522 clone p-3487-9F3 2.30.4.1.4.3172 OTU 1 seq prokMSA_id:34020 clone p-2044-s959-5 2.30.4.1.4.3189 OTU 3 seqs prokMSA_id:14032 Ruminococcus gnavus ATCC 29149 prokMSA_id:14034 Ruminococcus gnavus ATCC 29149 prokMSA_id:88198 inhufecA-23 AY328362 2.30.4.1.4.3210 OTU 1 seq prokMSA_id:44311 rumen 3C3d-15 2.30.4.1.4.3208 OTU 1 seq prokMSA_id:48120 clone p-2184-s959-3 2.30.4.1.4.3215 OTU 1 seq prokMSA_id:37025 clone CIAJG49 2.30.4.1.4.3225 OTU 1 seq prokMSA_id:71387 sp. oral clone DO008 2.30.4.1.4.3228 OTU 1 seq prokMSA_id:33681 clone p-2581-9F5 2.30.4.1.4.3229 OTU 1 seq prokMSA_id:27193 ckncm153-F1M.2G8 2.30.4.1.4.3226 OTU 1 seq prokMSA_id:45581 clone p-3-a5 2.30.4.1.4.3234 OTU 1 seq prokMSA_id:14021 Sporobacterium olearius str. SR1 DSM 12504 2.30.4.1.4.3238 OTU 1 seq prokMSA_id:14023 clone A11 2.30.4.1.4.3235 OTU 1 seq prokMSA_id:14022 clone JW29 2.30.4.1.4.3242 OTU 1 seq prokMSA_id:41448 equine intestinal sp. DW05 clone DW05 2.30.4.1.4.3244 OTU 1 seq prokMSA_id:14026 clone RFN48 2.30.4.1.4.3245 OTU 1 seq prokMSA_id:14027 clone RFN66 2.30.4.1.5 BTV.FIBRISOLVENS_SUBGROUP 99 seqs 2.30.4.1.5.2683 OTU 1 seq prokMSA_id:32556 Butyrate-producing L2-21 2.30.4.1.5.2712 OTU 1 seq prokMSA_id:25005 clone p-1276-a5 2.30.4.1.5.2741 OTU 1 seq prokMSA_id:14047 clone RC27 2.30.4.1.5.2737 OTU 1 seq prokMSA_id:14043 clone RF22 2.30.4.1.5.2742 OTU 1 seq prokMSA_id:14048 Butyrivibrio fibrisolvens str. T63 2.30.4.1.5.2774 OTU 1 seq prokMSA_id:14041 clone RC32 2.30.4.1.5.2781 OTU 4 seqs prokMSA_id:23274 rumen 2C28d-6 prokMSA_id:34221 rumen 2C28d-12 AB034118 prokMSA_id:34495 rumen 2C28d-1 prokMSA_id:54674 rumen 2C28d-5 2.30.4.1.5.2789 OTU 2 seqs prokMSA_id:16628 equine intestinal sp. DL32 clone DL32 prokMSA_id:51234 equine intestinal sp. MW09 clone MW09 2.30.4.1.5.2801 OTU 1 seq prokMSA_id:81139 Butyrivibrio fibrisolvens 2.30.4.1.5.2814 OTU 3 seqs prokMSA_id:36059 clone HuCA29 AJ408980 prokMSA_id:44776 adhufec310 AF132260 prokMSA_id:69909 ramulus 2.30.4.1.5.2815 OTU 3 seqs prokMSA_id:44493 Shuttleworthia satelles AF399956 prokMSA_id:70087 sp. oral clone EH006 AF385570 prokMSA_id:73645 sp. oral clone DN050 2.30.4.1.5.2820 OTU 1 seq prokMSA_id:48572 Pseudobutyrivibrio xylanovorans strain JK 633 2.30.4.1.5.2825 OTU 1 seq prokMSA_id:14049 Butyrivibrio fibrisolvens str. LP1265 2.30.4.1.5.2833 OTU 1 seq prokMSA_id:21868 equine intestinal sp. DL20 clone DL20 2.30.4.1.5.2834 OTU 5 seqs prokMSA_id:14058 Butyrivibrio fibrisolvens str. OB189 prokMSA_id:14059 Butyrivibrio fibrisolvens str. OB156 prokMSA_id:14066 Butyrivibrio fibrisolvens str. OB192 prokMSA_id:14067 Butyrivibrio fibrisolvens str. OB157 prokMSA_id:52841 Butyrivibrio fibrisolvens strain OB146 2.30.4.1.5.2844 OTU 7 seqs prokMSA_id:14046 Pseudobutyrivibrio ruminis str. A12-1 DSM 9787 prokMSA_id:14061 Butyrivibrio fibrisolvens str. Bu 21 NCDO 2399 prokMSA_id:14062 clone RFN34 prokMSA_id:14065 Butyrivibrio fibrisolvens str. CF3 prokMSA_id:19835 Pseudobutyrivibrio ruminis strain pC-XS2 prokMSA_id:36852 Butyrivibrio cf. fibrisolvens EAT6 prokMSA_id:74850 Pseudobutyrivibrio ruminis strain pC-XS6 2.30.4.1.5.2909 OTU 1 seq prokMSA_id:24372 equine intestinal sp. PW17 clone PW17 2.30.4.1.5.2919 OTU 1 seq prokMSA_id:28914 clone p-2418-55G5 2.30.4.1.5.2953 OTU 1 seq prokMSA_id:30190 equine intestinal sp. ML40 clone ML40 2.30.4.1.5.2952 OTU 1 seq prokMSA_id:72430 Butyrate-producing L1-81 2.30.4.1.5.2980 OTU 1 seq prokMSA_id:41673 clone p-2176-s959-3 2.30.4.1.5.2991 OTU 2 seqs prokMSA_id:72301 rumen 3C3d-8 prokMSA_id:73371 rumen 4C3d-14 AB034064 2.30.4.1.5.3000 OTU 1 seq prokMSA_id:42360 clone p-2205-s959-3 2.30.4.1.5.3009 OTU 1 seq prokMSA_id:14064 clone vadinBC06 2.30.4.1.5.3008 OTU 1 seq prokMSA_id:16353 clone p-1925-962-3 2.30.4.1.5.3013 OTU 1 seq prokMSA_id:14060 clone JW18 2.30.4.1.5.3046 OTU 1 seq prokMSA_id:41850 equine intestinal sp. DL17 clone DL17 2.30.4.1.5.3059 OTU 21 seqs prokMSA_id:14040 Butyrivibrio fibrisolvens str. 49 prokMSA_id:14042 clone RC13 prokMSA_id:14044 Butyrivibrio fibrisolvens NCDO 2223 prokMSA_id:14045 Butyrivibrio fibrisolvens str. H10b prokMSA_id:14050 Butyrivibrio fibrisolvens NCDO 2249 prokMSA_id:14051 Butyrivibrio fibrisolvens str. B835 prokMSA_id:14052 Butyrivibrio sp. str. sp45 prokMSA_id:14053 Butyrivibrio sp. str. sp42 prokMSA_id:14054 Butyrivibrio fibrisolvens str. AR27 prokMSA_id:14055 Butyrivibrio fibrisolvens str. OB236 prokMSA_id:14056 Butyrivibrio fibrisolvens str. OR35 prokMSA_id:14057 Butyrivibrio fibrisolvens str. OR79 prokMSA_id:14063 Butyrivibrio fibrisolvens NCDO 2397 prokMSA_id:18666 Pseudobutyrivibrio ruminis strain JK 626 prokMSA_id:21769 Pseudobutyrivibrio xylanovorans strain JK 23/2 prokMSA_id:23954 rumen 4C3d-11 prokMSA_id:36497 Pseudobutyrivibrio xylanovorans strain Mz 5 prokMSA_id:42103 rumen 4C3d-7 prokMSA_id:42110 Butyrivibrio fibrisolvens strain 1.230 prokMSA_id:45953 Butyrivibrio fibrisolvens strain 16.4 prokMSA_id:70650 Butyrivibrio fibrisolvens 2.30.4.1.5.3072 OTU 1 seq prokMSA_id:41204 clone p-2354-55G5 2.30.4.1.5.3075 OTU 5 seqs prokMSA_id:20827 Butyrate-producing L1-93 prokMSA_id:32710 Butyrate-producing A2-183 prokMSA_id:42286 adhufec225 prokMSA_id:70039 Roseburia intestinalis strain L1-82 prokMSA_id:73965 clone p-616-a5 2.30.4.1.5.3113 OTU 3 seqs prokMSA_id:17906 rumen 5C3d-5 prokMSA_id:23832 rumen 5C3d-20 prokMSA_id:30898 rumen 5C3d-16 AB034062 2.30.4.1.5.3123 OTU 1 seq prokMSA_id:45296 clone p-61-a5 2.30.4.1.5.3150 OTU 1 seq prokMSA_id:49854 clone p-3848-23G3 2.30.4.1.5.3149 OTU 12 seqs prokMSA_id:14038 rectale ATCC 33656 . L34627 prokMSA_id:35147 Butyrate-producing A1-86 AJ270475 prokMSA_id:36445 clone HuCB14 prokMSA_id:44330 Butyrate-producing T1-815 AJ270476 prokMSA_id:58030 sp. CB4 AB064884 prokMSA_id:62219 sp. clone:NB2A11 AB064721 prokMSA_id:70078 adhufec8 prokMSA_id:81674 rectale prokMSA_id:84111 clone ABLC21 AF499882 prokMSA_id:87206 clone: OLDA-A9 AB099747 prokMSA_id:88070 inhufecB-36 AY328375 prokMSA_id:92704 clone DONOR_61 AY343303 2.30.4.1.5.3156 OTU 1 seq prokMSA_id:36823 equine intestinal sp. ML09 clone ML09 2.30.4.1.5.3158 OTU 1 seq prokMSA_id:29269 equine intestinal sp. CW10 clone CW10 2.30.4.1.5.3165 OTU 2 seqs prokMSA_id:72630 saburreum-like sp. oral clone CK004 prokMSA_id:73120 Lachnospiraceae oral clone MCE9_104 E2 2.30.4.1.5.3162 OTU 2 seqs prokMSA_id:34889 rumen 2C28d-4 prokMSA_id:40464 rumen 2C28d-7 AB034122 2.30.4.1.5.3176 OTU 1 seq prokMSA_id:30192 equine intestinal sp. CL24 clone CL24 2.30.4.1.5.3177 OTU 1 seq prokMSA_id:18923 equine intestinal sp. PL34 clone PL34 2.30.4.1.5.3205 OTU 1 seq prokMSA_id:30420 equine intestinal sp. ML22 clone ML22 2.30.4.1.6 EUB.VENTRIOSUM_SUBGROUP 25 seqs 2.30.4.1.6.2676 OTU 1 seq prokMSA_id:14069 Clostridium indolis str. CM971 2.30.4.1.6.2709 OTU 1 seq prokMSA_id:33369 Butyrate-producing L2-12 2.30.4.1.6.2708 OTU 1 seq prokMSA_id:72606 AA02 2.30.4.1.6.2735 OTU 2 seqs prokMSA_id:32228 clone p-1529-b5 AF371637 prokMSA_id:77449 A13 2.30.4.1.6.2758 OTU 2 seqs prokMSA_id:29903 clone p-190-o5 prokMSA_id:34847 clone p-242-o5 2.30.4.1.6.2771 OTU 4 seqs prokMSA_id:16944 Butyrate-producing L1-92 prokMSA_id:31621 08.96.4 complete prokMSA_id:48557 AA04 prokMSA_id:74649 clone UASB_brew_B16 2.30.4.1.6.2843 OTU 1 seq prokMSA_id:42123 equine intestinal sp. CL17 clone CL17 2.30.4.1.6.2857 OTU 1 seq prokMSA_id:47001 equine intestinal sp. ML31 clone ML31 2.30.4.1.6.2870 OTU 1 seq prokMSA_id:37397 equine intestinal sp. DW21 clone DW21 2.30.4.1.6.2914 OTU 1 seq prokMSA_id:27728 equine intestinal sp. PL01 clone PL01 2.30.4.1.6.2958 OTU 1 seq prokMSA_id:20288 equine intestinal sp. ML21 clone ML21 2.30.4.1.6.2969 OTU 1 seq prokMSA_id:49088 adhufec236 2.30.4.1.6.2994 OTU 1 seq prokMSA_id:81051 clone: Rs-L15 2.30.4.1.6.3001 OTU 2 seqs prokMSA_id:53144 adhufec71.25 AF153862 prokMSA_id:72481 clone HuCA20 2.30.4.1.6.3048 OTU 1 seq prokMSA_id:33833 clone p-1321-a5 2.30.4.1.6.3107 OTU 2 seqs prokMSA_id:16477 oxidoreducens strain G2-2 prokMSA_id:38558 oxidoreducens strain DAS110 2.30.4.1.6.3133 OTU 1 seq prokMSA_id:37010 rumen 5C0d-13 2.30.4.1.6.3175 OTU 1 seq prokMSA_id:50208 clone p-2169-s959-3 2.30.4.1.7 LCN.MULTIPARA_SUBGROUP 17 seqs 2.30.4.1.7.2658 OTU 1 seq prokMSA_id:47452 clone p-17-a5 2.30.4.1.7.2663 OTU 1 seq prokMSA_id:50530 clone p-2016-s959-5 2.30.4.1.7.2719 OTU 1 seq prokMSA_id:46667 clone p-268-o5 2.30.4.1.7.2760 OTU 2 seqs prokMSA_id:42680 clone p-327-a3 prokMSA_id:72033 clone p-189-o5 2.30.4.1.7.2930 OTU 1 seq prokMSA_id:58017 clone:C-2 2.30.4.1.7.3016 OTU 4 seqs prokMSA_id:14076 eligens ATCC 27750 . L34420 prokMSA_id:21126 clone HuCA40 AJ408985 prokMSA_id:51050 adhufec85 prokMSA_id:91803 clone BREC_37 AY338355 2.30.4.1.7.3038 OTU 1 seq prokMSA_id:68841 clone p-1594-c5 2.30.4.1.7.3092 OTU 1 seq prokMSA_id:52718 equine intestinal sp. DW17 clone DW17 2.30.4.1.7.3122 OTU 1 seq prokMSA_id:22236 clone p-7-a5 2.30.4.1.7.3126 OTU 1 seq prokMSA_id:14073 "pectinii" str. P-1 DSM 6788 2.30.4.1.7.3171 OTU 1 seq prokMSA_id:82283 Lachnospira pectinoschiza 2.30.4.1.7.3185 OTU 2 seqs prokMSA_id:26597 clone p-1750-b3 prokMSA_id:33320 clone p-1692-b3 2.30.4.1.8 C.POLYSACCHAROLYTICUM_SUBGROUP 56 seqs 2.30.4.1.8.2659 OTU 1 seq prokMSA_id:74874 fiber-attaching rumen SY7 2.30.4.1.8.2693 OTU 8 seqs prokMSA_id:14081 ruminantium str. GA 195 ATCC 17233 . AB008552 prokMSA_id:31513 rumen clone:5ER prokMSA_id:31710 rumen clone:2ER prokMSA_id:31834 rumen clone:7ER prokMSA_id:34599 rumen clone:1ER prokMSA_id:36238 rumen clone:3ER prokMSA_id:39286 rumen clone:6ER AB056167 prokMSA_id:48656 rumen clone:4ER 2.30.4.1.8.2740 OTU 2 seqs prokMSA_id:14093 plexicaudatum str. ASF 492 prokMSA_id:14094 plexicaudatum ATCC 27514 2.30.4.1.8.2827 OTU 1 seq prokMSA_id:48583 Catonella sp. oral clone BR063 2.30.4.1.8.2864 OTU 1 seq prokMSA_id:73894 Catonella sp. oral clone AH153 2.30.4.1.8.2875 OTU 1 seq prokMSA_id:46613 rumen clone:9ER 2.30.4.1.8.2876 OTU 1 seq prokMSA_id:47342 equine intestinal sp. CL18 clone CL18 2.30.4.1.8.2882 OTU 3 seqs prokMSA_id:14085 clone A19 prokMSA_id:26113 adhufec46.25 AF153856 prokMSA_id:35020 adhufec157 2.30.4.1.8.2885 OTU 1 seq prokMSA_id:47274 fiber-attaching rumen SY13 2.30.4.1.8.2892 OTU 2 seqs prokMSA_id:14089 Clostridium polysaccharolyticum ATCC 33142 prokMSA_id:14090 Clostridium polysaccharolyticum DSM 1801 2.30.4.1.8.2904 OTU 1 seq prokMSA_id:34139 clone p-1573-b5 2.30.4.1.8.2912 OTU 1 seq prokMSA_id:20026 rumen clone:8ER 2.30.4.1.8.2939 OTU 1 seq prokMSA_id:20421 clone p-444-o3 2.30.4.1.8.2943 OTU 1 seq prokMSA_id:62513 MDA2477 2.30.4.1.8.2947 OTU 2 seqs prokMSA_id:47862 clone p-600-a5 AF371654 prokMSA_id:68840 clone p-339-a3 2.30.4.1.8.2992 OTU 1 seq prokMSA_id:31119 equine intestinal sp. DL07 clone DL07 2.30.4.1.8.2997 OTU 1 seq prokMSA_id:45915 fiber-attaching rumen clone:SY24 2.30.4.1.8.3033 OTU 6 seqs prokMSA_id:17859 isolate HuCC15 prokMSA_id:27613 clone HuCB26 prokMSA_id:28879 clone HuCA15 prokMSA_id:29597 A07 complete prokMSA_id:52410 clone p-2001-s959-5 AF371658 prokMSA_id:70163 Butyrate-producing L2-7 2.30.4.1.8.3035 OTU 1 seq prokMSA_id:14092 clone JW24 2.30.4.1.8.3061 OTU 1 seq prokMSA_id:40124 Butyrate-producing L2-50 2.30.4.1.8.3071 OTU 1 seq prokMSA_id:46273 firmicute clone CD13F11 2.30.4.1.8.3078 OTU 1 seq prokMSA_id:27706 equine intestinal sp. ML33 clone ML33 2.30.4.1.8.3097 OTU 1 seq prokMSA_id:41212 adhufec295 2.30.4.1.8.3094 OTU 1 seq prokMSA_id:25904 clone p-197-o5 2.30.4.1.8.3109 OTU 2 seqs prokMSA_id:14096 Catonella morbi ATCC 51271 prokMSA_id:40708 Catonella sp. oral clone EZ006 2.30.4.1.8.3140 OTU 1 seq prokMSA_id:14079 clone RF5 2.30.4.1.8.3144 OTU 1 seq prokMSA_id:51382 equine intestinal sp. CL07 clone CL07 2.30.4.1.8.3161 OTU 1 seq prokMSA_id:25995 rumen 4C0d-12 2.30.4.1.8.3173 OTU 1 seq prokMSA_id:14080 clone RF24 2.30.4.1.8.3178 OTU 1 seq prokMSA_id:27817 fiber-attaching rumen clone:SY31 2.30.4.1.8.3194 OTU 1 seq prokMSA_id:14083 clone RC36 2.30.4.1.8.3196 OTU 1 seq prokMSA_id:14084 clone JW33 2.30.4.1.8.3203 OTU 1 seq prokMSA_id:26949 equine intestinal sp. PL12 clone PL12 2.30.4.1.8.3202 OTU 1 seq prokMSA_id:14086 Coprococcus eutactus ATCC 27759 2.30.4.1.8.3204 OTU 1 seq prokMSA_id:14088 clone JW11 2.30.4.1.8.3212 OTU 1 seq prokMSA_id:71783 ckncm327-B6-72 2.30.4.1.8.3222 OTU 1 seq prokMSA_id:37633 clone p-2025-s959-5 2.30.4.1.8.3240 OTU 1 seq prokMSA_id:16512 clone p-2566-9F5 2.30.4.1.9 C.AMINOVALERICUM_SUBGROUP 24 seqs 2.30.4.1.9.2665 OTU 1 seq prokMSA_id:36892 clone p-2409-55G5 2.30.4.1.9.2671 OTU 1 seq prokMSA_id:14100 clone M30 2.30.4.1.9.2682 OTU 1 seq prokMSA_id:18245 clone:BCf4-09 2.30.4.1.9.2687 OTU 2 seqs prokMSA_id:14103 str. HESP1 DSM 12503 prokMSA_id:84603 rumen clone BE38 AY244954 2.30.4.1.9.2684 OTU 1 seq prokMSA_id:14101 Clostridium XB90 str. XB90 2.30.4.1.9.2690 OTU 1 seq prokMSA_id:14105 Clostridium aminovalericum DSM 1283 2.30.4.1.9.2717 OTU 2 seqs prokMSA_id:14098 clone adhufec37.25. AF153857 prokMSA_id:20939 clone HuCB56 2.30.4.1.9.2819 OTU 1 seq prokMSA_id:49372 equine intestinal sp. ML04 clone ML04 2.30.4.1.9.2851 OTU 1 seq prokMSA_id:28702 clone p-322-a3 2.30.4.1.9.2868 OTU 1 seq prokMSA_id:51036 equine intestinal sp. CW15 clone CW15 2.30.4.1.9.2941 OTU 1 seq prokMSA_id:41178 clone p-211-o5 2.30.4.1.9.2950 OTU 1 seq prokMSA_id:48887 from anoxic bulk soil clone BSV61 2.30.4.1.9.2964 OTU 1 seq prokMSA_id:49154 RSb40 2.30.4.1.9.3022 OTU 1 seq prokMSA_id:23653 from anoxic bulk soil clone BSV70 2.30.4.1.9.3041 OTU 1 seq prokMSA_id:14099 Clostridium populeti ATCC 35295 2.30.4.1.9.3062 OTU 1 seq prokMSA_id:50757 clone p-3181-SwA3 2.30.4.1.9.3095 OTU 2 seqs prokMSA_id:41849 equine intestinal sp. ML15 clone ML15 prokMSA_id:45632 equine intestinal sp. PL30 clone PL30 2.30.4.1.9.3115 OTU 1 seq prokMSA_id:21698 clone p-273-o5 2.30.4.1.9.3129 OTU 1 seq prokMSA_id:24243 clone g14Br5 2.30.4.1.9.3170 OTU 1 seq prokMSA_id:16766 clone p-1807-c3 2.30.4.1.9.3198 OTU 1 seq prokMSA_id:28479 Clostridiaceae str. 80Wc 2.30.4.2 C.PROPIONICUM_GROUP 26 seqs 2.30.4.2.1 C.PROPIONICUM_SUBGROUP 18 seqs 2.30.4.2.1.2691 OTU 1 seq prokMSA_id:14106 Clostridium propionicum DSM 1682 2.30.4.2.1.2699 OTU 1 seq prokMSA_id:14107 str. Iso11_2 2.30.4.2.1.2707 OTU 1 seq prokMSA_id:14109 Clostridium neopropionicum DSM 3847 2.30.4.2.1.2766 OTU 1 seq prokMSA_id:14108 Clostridium ASF356 str. ASF 356 2.30.4.2.1.2816 OTU 1 seq prokMSA_id:82089 MTCE-T2 4C 2.30.4.2.1.2824 OTU 1 seq prokMSA_id:29123 clone 6B 2.30.4.2.1.2846 OTU 1 seq prokMSA_id:44669 DCE25 2.30.4.2.1.2921 OTU 1 seq prokMSA_id:78382 clone:Rs-K95 2.30.4.2.1.2931 OTU 2 seqs prokMSA_id:77584 clone:Rs-G77 prokMSA_id:81579 clone: Rs-L40 AB100464 2.30.4.2.1.2960 OTU 1 seq prokMSA_id:46494 clone:BCf10-10 2.30.4.2.1.2967 OTU 1 seq prokMSA_id:31573 clone p-4496-6Wb3 2.30.4.2.1.2973 OTU 1 seq prokMSA_id:50377 clone 6A 2.30.4.2.1.3057 OTU 1 seq prokMSA_id:49274 Clostridium lactatifermentans 2.30.4.2.1.3060 OTU 1 seq prokMSA_id:77862 clone:Rs-B14 2.30.4.2.1.3134 OTU 1 seq prokMSA_id:32467 clone p-4247-4Wa3 2.30.4.2.1.3218 OTU 1 seq prokMSA_id:77765 clone:Rs-N53 2.30.4.2.1.3233 OTU 1 seq prokMSA_id:37128 clone:BCf1-11 2.30.4.2.2 C.COLINUM_SUBGROUP 8 seqs 2.30.4.2.2.2681 OTU 1 seq prokMSA_id:78144 clone:Rs-K41 2.30.4.2.2.2728 OTU 1 seq prokMSA_id:26279 clone:BCf8-25 2.30.4.2.2.2750 OTU 1 seq prokMSA_id:42607 Clostridium sp. NT-1 2.30.4.2.2.2775 OTU 1 seq prokMSA_id:14114 Clostridium colinum DSM 6011 2.30.4.2.2.2811 OTU 2 seqs prokMSA_id:14111 str. RT prokMSA_id:14113 str. RJ 2.30.4.2.2.2829 OTU 1 seq prokMSA_id:51807 Clostridium sp. NT-2 2.30.4.2.2.3217 OTU 1 seq prokMSA_id:77909 clone:Rs-D68 2.30.4.3 C.LENTOCELLUM_GROUP 12 seqs 2.30.4.3.2662 OTU 1 seq prokMSA_id:39361 clone p-5278-2Wa3 2.30.4.3.2761 OTU 1 seq prokMSA_id:14123 str. BD2-14 2.30.4.3.2762 OTU 1 seq prokMSA_id:14125 str. PS7 2.30.4.3.2763 OTU 2 seqs prokMSA_id:14120 Epulopiscium sp. str. morphotype A1 prokMSA_id:14121 Epulopiscium fishelsoni str. Red Sea A1 2.30.4.3.2900 OTU 1 seq prokMSA_id:80119 candidate division SR1 clone SRB2 2.30.4.3.2922 OTU 1 seq prokMSA_id:50432 gram-positive HOC39 2.30.4.3.2942 OTU 1 seq prokMSA_id:14126 Metabacterium polyspora 2.30.4.3.2944 OTU 1 seq prokMSA_id:14127 Metabacterium polyspora 2.30.4.3.2948 OTU 1 seq prokMSA_id:14128 Epulopiscium sp. str. morphotype B 2.30.4.3.2951 OTU 1 seq prokMSA_id:14129 Epulopiscium sp. str. morphotype A2 2.30.4.3.3011 OTU 1 seq prokMSA_id:14130 Epulopiscium fishelsoni str. Red Sea A2 2.30.4.4 EUBACTERIUM_GROUP 89 seqs 2.30.4.4.1 C.HALOPHILUM 1 seq 2.30.4.4.1.2984 OTU 1 seq prokMSA_id:14131 Clostridium halophilum DSM 5387 2.30.4.4.2 AAB.HYDROGENOFORMANS_SUBGROUP 20 seqs 2.30.4.4.2.2716 OTU 1 seq prokMSA_id:77959 Clostridiaceae clone:Rs-F76 2.30.4.4.2.2721 OTU 1 seq prokMSA_id:77890 clone:Rs-N71 2.30.4.4.2.2727 OTU 1 seq prokMSA_id:77964 Clostridiaceae clone:Rs-E70 2.30.4.4.2.2729 OTU 1 seq prokMSA_id:66940 clone SHA-58 2.30.4.4.2.2764 OTU 1 seq prokMSA_id:59830 clone OB3_52 2.30.4.4.2.2807 OTU 1 seq prokMSA_id:41951 clone Ebpr14 2.30.4.4.2.2832 OTU 1 seq prokMSA_id:25067 low-GC gram+ kpa86rc 2.30.4.4.2.2852 OTU 1 seq prokMSA_id:27616 AA33 2.30.4.4.2.2880 OTU 1 seq prokMSA_id:72230 AA05 2.30.4.4.2.2990 OTU 1 seq prokMSA_id:14132 Acidaminobacter hydrogenoformans str. glu 65 DSM 2784 2.30.4.4.2.3006 OTU 1 seq prokMSA_id:14135 Fusibacter paucivorans SEBR 4211 2.30.4.4.2.3010 OTU 1 seq prokMSA_id:14137 str. 48.h 2.30.4.4.2.3014 OTU 1 seq prokMSA_id:14133 clone vadinBB35 2.30.4.4.2.3023 OTU 1 seq prokMSA_id:83754 clone B04R016 2.30.4.4.2.3083 OTU 1 seq prokMSA_id:34789 clone p-2801-24E5 2.30.4.4.2.3119 OTU 1 seq prokMSA_id:37414 PM3 2.30.4.4.2.3125 OTU 1 seq prokMSA_id:74243 feedlot manure B6 2.30.4.4.2.3227 OTU 1 seq prokMSA_id:36762 PM33 2.30.4.4.2.3237 OTU 1 seq prokMSA_id:41943 low G+C Gram-positive MERTZ_0CM_115 2.30.4.4.2.3241 OTU 1 seq prokMSA_id:50268 clone p-5324-2Wa3 2.30.4.4.4 C.AMINOBUTYRICUM_SUBGROUP 21 seqs 2.30.4.4.4.2672 OTU 1 seq prokMSA_id:51211 clone:BCf9-05 2.30.4.4.4.2679 OTU 1 seq prokMSA_id:41514 clone:BCf9-13 2.30.4.4.4.2694 OTU 1 seq prokMSA_id:59564 sp. oral clone FX028 2.30.4.4.4.2710 OTU 1 seq prokMSA_id:66939 clone SHA-74 2.30.4.4.4.2714 OTU 1 seq prokMSA_id:77885 clone:Rs-N27 2.30.4.4.4.2722 OTU 1 seq prokMSA_id:78236 clone:Rs-E61 2.30.4.4.4.2838 OTU 1 seq prokMSA_id:24052 ckncm132-F1M.2B6 2.30.4.4.4.2913 OTU 1 seq prokMSA_id:78301 clone:Rs-N82 2.30.4.4.4.2933 OTU 1 seq prokMSA_id:14145 Clostridium aminobutyricum DSM 2634 2.30.4.4.4.2977 OTU 1 seq prokMSA_id:41744 clone TDC-S5:80 2.30.4.4.4.2988 OTU 1 seq prokMSA_id:82172 clone: Rs-050 2.30.4.4.4.3068 OTU 1 seq prokMSA_id:22544 equine intestinal sp. MW21 clone MW21 2.30.4.4.4.3080 OTU 1 seq prokMSA_id:78018 clone:Rs-F43 2.30.4.4.4.3112 OTU 2 seqs prokMSA_id:77744 clone:Rs-B74 prokMSA_id:77824 clone:Rs-M09 2.30.4.4.4.3124 OTU 1 seq prokMSA_id:33133 clone p-3212-42A2 2.30.4.4.4.3130 OTU 1 seq prokMSA_id:14148 clone Sva1064 2.30.4.4.4.3182 OTU 1 seq prokMSA_id:77831 clone:Rs-Q64 2.30.4.4.4.3187 OTU 1 seq prokMSA_id:20310 clone p-4199-6Wa5 2.30.4.4.4.3192 OTU 1 seq prokMSA_id:42984 Eub No. 20 2.30.4.4.4.3220 OTU 1 seq prokMSA_id:66192 clone IA-19 2.30.4.4.5 EUB.SAPHENUM 1 seq 2.30.4.4.5.3131 OTU 1 seq prokMSA_id:14149 saphenum ATCC 49989 2.30.4.4.6 EUB.NODATUM_SUBGROUP 14 seqs 2.30.4.4.6.2701 OTU 3 seqs prokMSA_id:39613 rumen 4C3d-12 AB034093 prokMSA_id:43800 rumen 3C3d-6 AB034092 prokMSA_id:50860 pyruvivorans 2.30.4.4.6.2792 OTU 5 seqs prokMSA_id:14150 tardum str. SC 87K prokMSA_id:14151 minutum ATCC 700079 prokMSA_id:14153 minutum ATCC 700079 prokMSA_id:14154 tardum str. SC 87K prokMSA_id:72513 tardum SC 87K 2.30.4.4.6.2946 OTU 1 seq prokMSA_id:23113 rumen 3C28d-4 2.30.4.4.6.2993 OTU 1 seq prokMSA_id:59533 oral clone P2PB_46 P3 2.30.4.4.6.3164 OTU 1 seq prokMSA_id:14152 C2 str. C2 2.30.4.4.6.3193 OTU 2 seqs prokMSA_id:14155 nodatum str. AK-5 ATCC 33099 . U13041 prokMSA_id:14156 nodatum str. AK-5 ATCC 33099 2.30.4.4.6.3214 OTU 1 seq prokMSA_id:37961 rumen 3C0d-17 2.30.4.4.7 EUB.BRACHY_SUBGROUP 32 seqs 2.30.4.4.7.2723 OTU 1 seq prokMSA_id:18066 rumen 3C0d-10 2.30.4.4.7.2738 OTU 4 seqs prokMSA_id:14164 Mogibacterium pumilum str. D2-18 prokMSA_id:14167 Mogibacterium vescum str. D5-2 prokMSA_id:18995 Mogibacterium diversum prokMSA_id:46159 Mogibacterium neglectum 2.30.4.4.7.2751 OTU 1 seq prokMSA_id:43339 sp. oral clone CK047 2.30.4.4.7.2752 OTU 1 seq prokMSA_id:43267 clone p-648-a5 2.30.4.4.7.2773 OTU 2 seqs prokMSA_id:28381 clone p-1032-a5 prokMSA_id:76547 Swine manure 37-2 2.30.4.4.7.2772 OTU 1 seq prokMSA_id:78354 clone:Rs-M13 2.30.4.4.7.2800 OTU 2 seqs prokMSA_id:14163 timidum prokMSA_id:14166 timidum 2.30.4.4.7.2805 OTU 1 seq prokMSA_id:59565 sp. oral clone FX033 2.30.4.4.7.2813 OTU 1 seq prokMSA_id:52379 Anaerovorax odorimutans strain NorPut 2.30.4.4.7.2896 OTU 1 seq prokMSA_id:45635 fiber-attaching rumen SY12 2.30.4.4.7.2916 OTU 1 seq prokMSA_id:44950 rumen 5C0d-8 2.30.4.4.7.2925 OTU 1 seq prokMSA_id:36792 clone p-83-a5 2.30.4.4.7.2972 OTU 1 seq prokMSA_id:16550 rumen 4C28d-20 2.30.4.4.7.3018 OTU 2 seqs prokMSA_id:14165 clone RF35 prokMSA_id:17051 rumen 3C0d-4 2.30.4.4.7.3034 OTU 1 seq prokMSA_id:14161 clone RF21 2.30.4.4.7.3106 OTU 1 seq prokMSA_id:21556 ckncm209-F4M.1F3 2.30.4.4.7.3139 OTU 1 seq prokMSA_id:46317 equine intestinal sp. CL32 clone CL32 2.30.4.4.7.3153 OTU 3 seqs prokMSA_id:14160 Fusobacterium sulci ATCC 35585 prokMSA_id:34881 sp. oral strain A35MT prokMSA_id:71791 infirmum W 1471 2.30.4.4.7.3197 OTU 2 seqs prokMSA_id:14157 brachy str. BR-179 ATCC 33089 . Z36272 prokMSA_id:14158 brachy str. BR-179 ATCC 33089 2.30.4.4.7.3200 OTU 2 seqs prokMSA_id:14159 infirmum str. W 1471; clone 1471-3 prokMSA_id:14162 infirmum str. W 1471; clone 1471-3. U13039 2.30.4.4.7.3216 OTU 1 seq prokMSA_id:36226 clone p-3263-42A2 2.30.4.4.7.3230 OTU 1 seq prokMSA_id:44410 rumen 3C0d-16 2.30.4.5 C.LITUSEBURENSE_GROUP 111 seqs 2.30.4.5.1 C.FORMICOACETICUM_SUBGROUP 27 seqs 2.30.4.5.1.2657 OTU 1 seq prokMSA_id:71603 Clostridium alcaliphilum isolate B8NS1-A 2.30.4.5.1.2664 OTU 1 seq prokMSA_id:60608 clone R35 2.30.4.5.1.2689 OTU 1 seq prokMSA_id:25925 Alkalliphilus auruminator 2.30.4.5.1.2736 OTU 1 seq prokMSA_id:58790 Alkaliphils metalliredigenes 2.30.4.5.1.2759 OTU 4 seqs prokMSA_id:14174 Tindallia magadii str. Z-7934T DSM 10318. Y15626 prokMSA_id:28874 Tindallia sp. APO prokMSA_id:40951 Clostridium aminovorans isolate B7FT-A AJ271455 prokMSA_id:51262 Clostridium bogorii isolate B8NS1-C AJ271457 2.30.4.5.1.2768 OTU 1 seq prokMSA_id:43181 Natronoincola histidinovorans 2.30.4.5.1.2794 OTU 3 seqs prokMSA_id:51694 Caminibacillus sporogenes strain AM1114 prokMSA_id:79538 Clostridium sp. Dex60-28 strain Dex60-28 prokMSA_id:79586 Clostridium sp. Dex60-4 strain Dex60-4 2.30.4.5.1.3003 OTU 1 seq prokMSA_id:79318 Clostridium sp. Dex60-75 strain Dex60-75 2.30.4.5.1.3021 OTU 1 seq prokMSA_id:67640 Clostridium subatlanticum 2.30.4.5.1.3039 OTU 1 seq prokMSA_id:14168 Clostridium formicoaceticum DSM 92 2.30.4.5.1.3040 OTU 1 seq prokMSA_id:14169 Clostridium felsineum DSM 794 2.30.4.5.1.3051 OTU 1 seq prokMSA_id:14171 clone EKHO-3 2.30.4.5.1.3053 OTU 1 seq prokMSA_id:14173 clone ACE-8 2.30.4.5.1.3050 OTU 1 seq prokMSA_id:14170 clone PENDANT-5 2.30.4.5.1.3052 OTU 1 seq prokMSA_id:14172 clone ACE-14 2.30.4.5.1.3067 OTU 1 seq prokMSA_id:40259 Clostridium aceticum strain DSM 1496 2.30.4.5.1.3069 OTU 1 seq prokMSA_id:42001 firmicute isolate ikaite un-c24 2.30.4.5.1.3084 OTU 1 seq prokMSA_id:55916 clone RCP2-16 2.30.4.5.1.3096 OTU 1 seq prokMSA_id:45283 Alkaliphilus crotonoxidans 2.30.4.5.1.3104 OTU 1 seq prokMSA_id:19154 Clostridium elmenteitii isolate E2SE1-B 2.30.4.5.1.3201 OTU 1 seq prokMSA_id:31552 TCE8 2.30.4.5.1.3219 OTU 1 seq prokMSA_id:60603 clone R82 2.30.4.5.2 C.STICKLANDII_SUBGROUP 10 seqs 2.30.4.5.2.2725 OTU 2 seqs prokMSA_id:14180 Clostridium litorale DSM 5388 . X77845 prokMSA_id:19395 RFLP15 2.30.4.5.2.2785 OTU 2 seqs prokMSA_id:14177 Filifactor villosus ATCC 33388 prokMSA_id:60259 Filifactor villosus strain DSM1645 2.30.4.5.2.2796 OTU 2 seqs prokMSA_id:73998 sp. oral clone BB142 prokMSA_id:86132 P4P_50 P4 2.30.4.5.2.2859 OTU 2 seqs prokMSA_id:14175 Clostridium sticklandii str. HF ATCC 12662 prokMSA_id:66195 clone IA-11 2.30.4.5.2.2869 OTU 1 seq prokMSA_id:51973 Frigovirgula patagoniensis 2.30.4.5.2.3073 OTU 1 seq prokMSA_id:14182 acidaminophilum str. a1-2 DSM 3953 2.30.4.5.3 C.PARADOXUM_SUBGROUP 18 seqs 2.30.4.5.3.2915 OTU 1 seq prokMSA_id:76251 Tepidibacter thalassicus 2.30.4.5.3.3019 OTU 1 seq prokMSA_id:83820 Tepidibacter formicigenes 2.30.4.5.3.3049 OTU 1 seq prokMSA_id:14189 Clostridium paradoxum str. JW-YL-7 DSM 7308 2.30.4.5.3.3074 OTU 1 seq prokMSA_id:14184 Clostridium paradoxum str. JW-YL-7 DSM 7308 2.30.4.5.3.3108 OTU 14 seqs prokMSA_id:14185 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14186 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14187 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14188 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14190 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14191 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14192 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14193 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14194 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14195 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14196 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14197 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14198 Clostridium paradoxum str. JW-YL-7 DSM 7308 prokMSA_id:14199 Clostridium paradoxum str. JW-YL-7 DSM 7308 2.30.4.5.4 EUB.TENUE_SUBGROUP 23 seqs 2.30.4.5.4.2697 OTU 1 seq prokMSA_id:86240 clone ER1_16 2.30.4.5.4.2734 OTU 2 seqs prokMSA_id:22919 NoosaAW40 prokMSA_id:33869 NoosaAW21 2.30.4.5.4.2767 OTU 1 seq prokMSA_id:39443 TM7 phylum sp. oral clone CW040 2.30.4.5.4.2790 OTU 2 seqs prokMSA_id:33116 Clostridium sp. FL3 prokMSA_id:39630 Clostridium sp. FL4 2.30.4.5.4.2917 OTU 1 seq prokMSA_id:65697 soil clone C026 2.30.4.5.4.2932 OTU 1 seq prokMSA_id:74315 O8SA 2.30.4.5.4.2935 OTU 2 seqs prokMSA_id:16614 TM7 phylum sp. oral clone BU080 prokMSA_id:81990 candidate division TM7 clone SBG2 AY144354 2.30.4.5.4.2940 OTU 1 seq prokMSA_id:22963 SBR2096 2.30.4.5.4.2982 OTU 1 seq prokMSA_id:14203 clone AH040 2.30.4.5.4.2985 OTU 1 seq prokMSA_id:21239 sp. oral clone BS003 2.30.4.5.4.3025 OTU 1 seq prokMSA_id:81216 candidate division TM7 clone: Rs-045 2.30.4.5.4.3044 OTU 3 seqs prokMSA_id:65413 clone 8A prokMSA_id:65418 clone 734 prokMSA_id:72510 clone 75 2.30.4.5.4.3081 OTU 1 seq prokMSA_id:17873 candidate division TM7 clone SM1G12 2.30.4.5.4.3093 OTU 1 seq prokMSA_id:45149 SBR2060 2.30.4.5.4.3098 OTU 1 seq prokMSA_id:31451 O815 2.30.4.5.4.3101 OTU 1 seq prokMSA_id:34534 NoosaAW91 2.30.4.5.4.3145 OTU 1 seq prokMSA_id:70379 TM7 phylum sp. oral clone DR034 2.30.4.5.4.3151 OTU 1 seq prokMSA_id:65419 clone 71 2.30.4.5.5 C.BIFERMENTANS_SUBGROUP 12 seqs 2.30.4.5.5.2996 OTU 1 seq prokMSA_id:14208 clone T37 2.30.4.5.5.3026 OTU 11 seqs prokMSA_id:14207 Clostridium bifermentans NCIMB 10716 prokMSA_id:14209 Clostridium bifermentans str. DPH-1. Y18787 prokMSA_id:29530 C.bifermentans prokMSA_id:33501 Mastodon intestinal AN-17-3 U65715 prokMSA_id:36106 Elbe River snow isolate Iso11_3 AF150692 prokMSA_id:51941 Clostridium bifermentans prokMSA_id:70590 Clostridium paraputrificum prokMSA_id:72328 Clostridium sp. FL2 AF224673 prokMSA_id:75054 Swine manure RT-4B prokMSA_id:76631 Swine manure RT-1A prokMSA_id:76955 Swine manure RT-5A 2.30.4.5.6 C.LITUSEBURENSE 2 seqs 2.30.4.5.6.3031 OTU 1 seq prokMSA_id:19162 from anoxic bulk soil clone BSV76 2.30.4.5.6.3183 OTU 1 seq prokMSA_id:22418 Clostridium sp. 48 2.30.4.5.7 C.GLYCOLICUM_SUBGROUP 8 seqs 2.30.4.5.7.2786 OTU 2 seqs prokMSA_id:40074 Clostridium glycolicum prokMSA_id:84941 Clostridium glycolicum 2.30.4.5.7.3012 OTU 2 seqs prokMSA_id:70837 clone p-478-o2 AF371691 prokMSA_id:83050 Clostridium sp. MDA2315 2.30.4.5.7.3077 OTU 4 seqs prokMSA_id:14212 Clostridium glycolicum DSM 1288 prokMSA_id:18262 clone p-248-o5 AF371689 prokMSA_id:38819 ZF5 prokMSA_id:46716 Clostridium sordellii 2.30.4.5.8 C.DIFFICILE_SUBGROUP 4 seqs 2.30.4.5.8.2778 OTU 4 seqs prokMSA_id:14215 Clostridium difficile str. N6; Clark 90556-M6S; Mc Clung 178 prokMSA_id:14216 Clostridium difficile VPI 10463. AF072473 prokMSA_id:14217 Clostridium difficile str. 79685. AF072474 prokMSA_id:70276 Clostridium difficile 2.30.4.5.10 PPS.ANAEROBIUS_SUBGROUP 7 seqs 2.30.4.5.10.2797 OTU 6 seqs prokMSA_id:75534 Swine manure RT-8A prokMSA_id:75733 Swine manure RT-23A prokMSA_id:76083 Swine manure 37-1 prokMSA_id:76167 Swine manure RT-19A prokMSA_id:76533 Swine manure RT-13B prokMSA_id:76636 Swine manure RT-10B 2.30.4.5.10.3179 OTU 1 seq prokMSA_id:14228 Peptostreptococcus D1 str. D1 2.30.5 C.PURINOLYTICUM_GROUP 110 seqs 2.30.5.1 C.PURINOLYTICUM_SUBGROUP 55 seqs 2.30.5.1.1045 OTU 1 seq prokMSA_id:34061 clone p-3402-SwA2 2.30.5.1.1053 OTU 5 seqs prokMSA_id:14238 Pseudoramibacter alactolyticus DSM 3980 . NONE prokMSA_id:20221 Pseudoramibacter alactolyticus strain:9p-21 prokMSA_id:30675 Pseudoramibacter alactolyticus strain:146-3 prokMSA_id:46867 Pseudoramibacter alactolyticus strain:23263T prokMSA_id:70847 Firmicutes sp. oral clone CK057 AF287778 2.30.5.1.1066 OTU 6 seqs prokMSA_id:14235 limosum ATCC 8486 prokMSA_id:14240 callanderi str. FD DSM 3662 prokMSA_id:14241 Clostridium 'Butyribacterium methylotrophicum' prokMSA_id:14242 limosum str. PM31 prokMSA_id:14243 limosum str. kist612 prokMSA_id:37240 clone 9D 2.30.5.1.123 OTU 1 seq prokMSA_id:14250 thermomarinus 2.30.5.1.154 OTU 1 seq prokMSA_id:14257 Acetobacterium fimetarium str. Z-4290 DSM 8238 2.30.5.1.19 OTU 1 seq prokMSA_id:49375 isolate RFLP 415 2.30.5.1.28 OTU 1 seq prokMSA_id:77821 clone:Rs-H81 2.30.5.1.289 OTU 1 seq prokMSA_id:24041 low G+C Gram-positive MERTZ_21CM_91 2.30.5.1.323 OTU 1 seq prokMSA_id:14237 Acetobacterium woodii str. WB1 DSM 1030 2.30.5.1.331 OTU 1 seq prokMSA_id:14239 clone ACE-18 2.30.5.1.423 OTU 1 seq prokMSA_id:67841 low G+C Gram-positive clone 44a-B1-37 2.30.5.1.472 OTU 1 seq prokMSA_id:29789 isolate RFLP 194 2.30.5.1.552 OTU 1 seq prokMSA_id:33448 Thermohalobacter berrensis complete 2.30.5.1.608 OTU 1 seq prokMSA_id:17818 Banisveld landfill BVA18 2.30.5.1.670 OTU 1 seq prokMSA_id:31598 KF-Gitt2-16 2.30.5.1.687 OTU 24 seqs prokMSA_id:14230 Acetobacterium wieringae str. C DSM 1911 prokMSA_id:14232 Acetobacterium malicum str. MuME1 DSM 4132 prokMSA_id:14233 clone Aspo4 prokMSA_id:14234 Acetobacterium psammolithicum str. CN-E prokMSA_id:14255 Acetobacterium carbinolicum str. WoProp 1 DSM 2925 prokMSA_id:27312 Banisveld landfill BVA53 prokMSA_id:32798 epsilon 1055 prokMSA_id:66182 clone IB-28 prokMSA_id:70260 Acetobacterium sp. HAAP-1 prokMSA_id:75865 Acetobacterium sp. TM20-2 prokMSA_id:77494 Acetobacterium sp. clone A4 prokMSA_id:79093 Acetobacterium sp. clone AKS29 prokMSA_id:79098 Acetobacterium sp. clone AKS04 prokMSA_id:79162 Acetobacterium sp. clone AKS17 prokMSA_id:79235 Acetobacterium sp. clone ARC03 prokMSA_id:79278 Acetobacterium sp. clone ARC01 prokMSA_id:79314 Acetobacterium sp. clone ARC05 prokMSA_id:79459 Acetobacterium sp. clone AKS70 prokMSA_id:79463 Acetobacterium sp. clone AKS48 prokMSA_id:79515 Acetobacterium sp. clone AKS02 prokMSA_id:79527 Acetobacterium sp. clone AKS55 prokMSA_id:79549 Acetobacterium sp. clone AKS42 prokMSA_id:79573 Acetobacterium sp. clone ARC44 prokMSA_id:82262 clone ZZ14C8 2.30.5.1.707 OTU 1 seq prokMSA_id:14231 Acetobacterium bakii str. Z-4391 DSM 8239 2.30.5.1.748 OTU 1 seq prokMSA_id:14253 aggregans str. SR12 DSM 12183 2.30.5.1.764 OTU 2 seqs prokMSA_id:14249 Acetobacterium paludosum str. Z-4092 DSM 8237 prokMSA_id:28584 Acetobacterium aff. tundrae DSM 9173 AJ297449 2.30.5.1.900 OTU 1 seq prokMSA_id:28721 str. 77003 2.30.5.1.923 OTU 2 seqs prokMSA_id:14248 barkeri prokMSA_id:14252 barkeri ATCC 25849 2.30.5.2 C.HYDROXYBENZOICUM_SUBGROUP 8 seqs 2.30.5.2.168 OTU 1 seq prokMSA_id:14259 clone EKHO-5 2.30.5.2.247 OTU 1 seq prokMSA_id:36368 species isolate Boom-7m-01 2.30.5.2.26 OTU 1 seq prokMSA_id:51443 ZF2 2.30.5.2.557 OTU 1 seq prokMSA_id:82374 MTCE-T2 9H 2.30.5.2.656 OTU 1 seq prokMSA_id:34536 clone RFLP 62E 2.30.5.2.668 OTU 1 seq prokMSA_id:85712 Sedimentibacter sp. BRS2 2.30.5.2.782 OTU 1 seq prokMSA_id:14260 str. Boom-3m-09 2.30.5.2.88 OTU 1 seq prokMSA_id:49196 Clostridium hongkongensis 2.30.5.3 TSS.PRAEACUTA_SUBGROUP 15 seqs 2.30.5.3.140 OTU 1 seq prokMSA_id:59568 Peptostreptococcus sp. oral clone EX153 2.30.5.3.215 OTU 1 seq prokMSA_id:14267 Clostridium filamentosum DSM 6645 2.30.5.3.218 OTU 1 seq prokMSA_id:14269 Clostridium sp. str. PO 2.30.5.3.265 OTU 1 seq prokMSA_id:70715 feedlot manure B37 2.30.5.3.268 OTU 1 seq prokMSA_id:35017 Acetanaerobacter thermotolerans 2.30.5.3.436 OTU 1 seq prokMSA_id:84656 Peptostreptococcaceae 19gly3 2.30.5.3.604 OTU 1 seq prokMSA_id:38592 feedlot manure B1 2.30.5.3.619 OTU 1 seq prokMSA_id:82015 MTCE-T2 1G 2.30.5.3.645 OTU 1 seq prokMSA_id:52451 Symbiobacterium sp. HN1 2.30.5.3.699 OTU 1 seq prokMSA_id:52800 Clostridium sp. 4 2.30.5.3.736 OTU 4 seqs prokMSA_id:14261 Tissierella praeacuta ATCC 25539 prokMSA_id:14262 Tissierella praeacuta NCTC 11158. X80832 prokMSA_id:14263 Clostridium hastiforme DSM 5675 prokMSA_id:14264 Clostridium hastiforme DSM 5675 2.30.5.3.799 OTU 1 seq prokMSA_id:14266 Clostridium sp. str. BN II 2.30.5.4 HLC.KUNZII_SUBGROUP 2 seqs 2.30.5.4.254 OTU 1 seq prokMSA_id:14270 Helcococcus kunzii NCFB 2900 2.30.5.4.823 OTU 1 seq prokMSA_id:14271 Helcococcus 'CCUG 37441' str. s840-96-2 CCUG 37441 2.30.5.5 PPS.MICROS_SUBGROUP 6 seqs 2.30.5.5.224 OTU 6 seqs prokMSA_id:81082 Finegoldia magna clone 1-9 prokMSA_id:84501 Finegoldia magna strain CCUG 17636 prokMSA_id:86757 Finegoldia magna rrnB operon 23S 5S tRNA-Ile complete AB1097 prokMSA_id:87725 Finegoldia magna rrnC operon complete AB109771 prokMSA_id:87735 Finegoldia magna operon 23S 5S complete AB109769 prokMSA_id:87971 Finegoldia magna rrnD operon complete AB109772 2.30.5.6 PPS.IVORII_SUBGROUP 4 seqs 2.30.5.6.259 OTU 1 seq prokMSA_id:14275 Peptostreptococcus ivorii str. SBH093 DSM 10022 2.30.5.6.340 OTU 2 seqs prokMSA_id:70045 feedlot manure B56 prokMSA_id:71841 feedlot manure B90 2.30.5.6.58 OTU 1 seq prokMSA_id:68341 Peptostreptococcus sp. E3_32 E1 oral isolate 2.30.5.7 PPS.INDOLICUS_SUBGROUP 13 seqs 2.30.5.7.1037 OTU 1 seq prokMSA_id:81585 Finegoldia magna clone 1-68 2.30.5.7.134 OTU 1 seq prokMSA_id:84857 Peptoniphilus asaccharolyticus strain CCUG 9988 2.30.5.7.17 OTU 1 seq prokMSA_id:59528 Peptostreptococcus sp. oral clone P4PA_156 P4 2.30.5.7.616 OTU 1 seq prokMSA_id:83175 Peptoniphilus lacrimalis strain CCUG 31350 2.30.5.7.801 OTU 1 seq prokMSA_id:73616 feedlot manure B29 2.30.5.7.837 OTU 1 seq prokMSA_id:14277 Peptostreptococcus indolicus ATCC 29427 2.30.5.7.840 OTU 1 seq prokMSA_id:14278 Peptostreptococcus harei str. SBH432 DSM 10020 2.30.5.7.847 OTU 1 seq prokMSA_id:14280 Peptostreptococcus lacrimalis GIFU 7667 2.30.5.7.861 OTU 2 seqs prokMSA_id:83803 Peptoniphilus sp. 2002-2300004 prokMSA_id:86390 Peptoniphilus sp. 2002-38328 2.30.5.7.870 OTU 1 seq prokMSA_id:14281 Peptostreptococcus sp. str. 9succ1 2.30.5.7.907 OTU 2 seqs prokMSA_id:14282 Peptostreptococcus S1 str. S1 prokMSA_id:86504 Peptoniphilus indolicus 2.30.5.8 PPS.TETRADIUS_SUBGROUP 7 seqs 2.30.5.8.173 OTU 2 seqs prokMSA_id:14289 Peptostreptococcus lactolyticus GIFU 8586 prokMSA_id:84198 Anaerococcus lactolyticus strain CCUG 31351 2.30.5.8.393 OTU 1 seq prokMSA_id:85470 Anaerococcus vaginalis strain CCUG 31349 2.30.5.8.901 OTU 1 seq prokMSA_id:14290 Peptostreptococcus octavius str. Davey 1 NCTC 9810 2.30.5.8.919 OTU 3 seqs prokMSA_id:30062 Peptostreptococcus sp. clone KL-59-7-12 prokMSA_id:84746 Anaerococcus prevotii strain CCUG 41932 prokMSA_id:85988 Anaerococcus tetradius strain CCUG 46590 2.30.6 ANAEROBIC_HALOPHILES 34 seqs 2.30.6.1 HLA.CHITINOVORANS_SUBGROUP 12 seqs 2.30.6.1.6 OTU 1 seq prokMSA_id:14301 Halobacteroides halobius str. MD-1 DSM 5150 2.30.6.1.733 OTU 1 seq prokMSA_id:14292 Haloanaerobacter lacunaris str. Z-7888 DSM 6640 2.30.6.1.754 OTU 1 seq prokMSA_id:14295 Haloanaerobacter lacunaris str. Z-7888 DSM 6640 2.30.6.1.758 OTU 1 seq prokMSA_id:14296 clone EKHO-16 2.30.6.1.759 OTU 1 seq prokMSA_id:14299 Haloanaerobacter chitinovorans str. W5C8 OCM 229 2.30.6.1.786 OTU 2 seqs prokMSA_id:69790 Orenia salinaria prokMSA_id:83871 low G+C Gram-positive isolate SB-31 2.30.6.1.887 OTU 2 seqs prokMSA_id:14293 Haloanaerobacter salinarius str. SG3903 prokMSA_id:14294 Haloanaerobacter chitinovorans str. W5C8 OGC 229 2.30.6.1.947 OTU 1 seq prokMSA_id:14300 Halobacteroides halobius str. MD-1 ATCC 35273 2.30.6.1.950 OTU 1 seq prokMSA_id:14302 Orenia marismortui str. DY-1 DSM 5156 2.30.6.1.953 OTU 1 seq prokMSA_id:14304 Orenia sivashensis str. Z-7191 2.30.6.2 ACH.ARABATICUM_SUBGROUP 2 seqs 2.30.6.2.958 OTU 1 seq prokMSA_id:14307 Sporohalobacter lortetii str. MD-2 ATCC 35059 2.30.6.2.966 OTU 1 seq prokMSA_id:14308 Acetohalobium arabaticum str. Z-7288 DSM 5501 2.30.6.3 HALOANAEROBIUM_GROUP 20 seqs 2.30.6.3.1 HTT.ORENII_SUBGROUP 2 seqs 2.30.6.3.1.968 OTU 1 seq prokMSA_id:14309 Halothermothrix orenii str. H168 OCM 544 2.30.6.3.1.991 OTU 1 seq prokMSA_id:14310 clone EKHO-9 2.30.6.3.2 HCL.CELLULOLYTICA_SUBGROUP 2 seqs 2.30.6.3.2.1001 OTU 1 seq prokMSA_id:14311 Halocella cellulolytica str. Z-10151 DSM 7362 2.30.6.3.2.1002 OTU 1 seq prokMSA_id:14312 clone EKHO-1 2.30.6.3.3 HAN.PRAEVALENS_SUBGROUP 16 seqs 2.30.6.3.3.1003 OTU 1 seq prokMSA_id:14313 Haloanaerobium salsugo str. VS-752 ATCC 51327 2.30.6.3.3.1006 OTU 1 seq prokMSA_id:14314 Haloanaerobium lacuroseus str. H200 DSM 10165 2.30.6.3.3.1043 OTU 1 seq prokMSA_id:14323 Haloanaerobium saccharolyticum subsp. senegalense str. H150 2.30.6.3.3.1055 OTU 1 seq prokMSA_id:14328 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z 2.30.6.3.3.197 OTU 8 seqs prokMSA_id:14315 Haloanaerobium acetoethylicum str. EIGI DSM 3532 prokMSA_id:14316 Haloanaerobium acetoethylicum str. EIGI DSM 3532 prokMSA_id:14317 Haloanaerobium acetoethylicum. U86448 prokMSA_id:14319 Haloanaerobium praevalens DSM 2228 . AB022034 prokMSA_id:14321 Haloanaerobium praevalens str. strain S-8 from the can of Sw prokMSA_id:14324 Haloanaerobium saccharolyticum subsp. senegalense DSM 7379 prokMSA_id:14326 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z prokMSA_id:49598 Halanaerobium sp. KT-2/3-3 2.30.6.3.3.803 OTU 4 seqs prokMSA_id:23398 Halanaerobium sp. KT-8-13 prokMSA_id:23710 Red Sea KT-2K23 prokMSA_id:24600 Red Sea KT-2K28 prokMSA_id:49272 Halanaerobium sp. S5L4 2.30.7 BACILLUS-LACTOBACILLUS-STREPTOCOCCUS_SUBDIVISION 2633 seqs 2.30.7.1 ALICYCLOBACILLUS_GROUP 45 seqs 2.30.7.1.3259 OTU 1 seq prokMSA_id:44616 Alicyclobacillus herbarius 2.30.7.1.3260 OTU 1 seq prokMSA_id:29451 Sulfobacillus sp. strain ML1/10-22 2.30.7.1.3271 OTU 2 seqs prokMSA_id:14341 Sulfobacillus thermosulfidooxidans prokMSA_id:94490 Sulfobacillus thermosulfidooxidans AB089844 2.30.7.1.3352 OTU 2 seqs prokMSA_id:23447 Alicyclobacillus sp. TA 67T strain:TA 67T prokMSA_id:58498 Alicyclobacillus acidiphilus AB076660 2.30.7.1.3368 OTU 1 seq prokMSA_id:58325 Gram-positive iron-oxidizing acidophile Y0010 2.30.7.1.3376 OTU 1 seq prokMSA_id:25597 Alicyclobacillus acidoterrestris strain:DSM 2498 2.30.7.1.3400 OTU 1 seq prokMSA_id:26544 Sulfobacillus montserratensis strain L15 2.30.7.1.3405 OTU 5 seqs prokMSA_id:14344 Pasteuria penetrans str. P-20; P-100 prokMSA_id:38647 Pasteuria penetrans AF375881 prokMSA_id:62225 Pasteuria penetrans strain 98-35 ; and tRNA-Ala complete AY1 prokMSA_id:68451 Pasteuria sp. clone NCf4 prokMSA_id:68454 Pasteuria sp. clone Nf3 AY081917 2.30.7.1.3461 OTU 1 seq prokMSA_id:25382 Sulfobacillus sp. Fras1 2.30.7.1.3487 OTU 4 seqs prokMSA_id:14345 Alicyclobacillus acidoterrestris DSM 3923 prokMSA_id:32908 Alicyclobacillus acidocaldarius strain:DSM 451 AB059672 prokMSA_id:34592 Alicyclobacillus acidocaldarius strain:DSM 452 AB059673 prokMSA_id:55934 Alicyclobacillus acidocaldarius strain DSM 446 2.30.7.1.3518 OTU 1 seq prokMSA_id:40294 Sulfobacillus sp. strain ML1/10-19 2.30.7.1.3578 OTU 2 seqs prokMSA_id:16300 GSM prokMSA_id:24598 Alicyclobacillus sp. AGC-2 2.30.7.1.3597 OTU 5 seqs prokMSA_id:14346 Alicyclobacillus cycloheptanicus prokMSA_id:21935 Alicyclobacillus cycloheptanicus AB042059 prokMSA_id:40466 Alicyclobacillus cycloheptanicus strain:DSM 4007 prokMSA_id:45506 Alicyclobacillus cycloheptanicus strain:DSM 4005 AB059680 prokMSA_id:63190 Bacillus cycloheptanicus 2.30.7.1.3657 OTU 5 seqs prokMSA_id:33263 Sulfobacillus yellowstonensis strain YTF-1 AY007665 prokMSA_id:58331 Sulfobacillus sp. GG6/1 prokMSA_id:64391 Sulfobacillus sp. NC prokMSA_id:66335 Sulfobacillus sp. YTF3 prokMSA_id:95123 Sulfobacillus acidophilus AB089842 2.30.7.1.3674 OTU 1 seq prokMSA_id:51329 Gram-positive iron-oxidizing acidophile SLC66 2.30.7.1.3694 OTU 1 seq prokMSA_id:29823 Mixotrophic iron-oxidizing 2.30.7.1.3806 OTU 1 seq prokMSA_id:73543 Sulfobacillus ambivalens strain RIV14 2.30.7.1.3832 OTU 1 seq prokMSA_id:41279 Sulfobacillus sp. P3-5 2.30.7.1.3853 OTU 1 seq prokMSA_id:14343 symbiont of Daphnia sp 2.30.7.1.3852 OTU 1 seq prokMSA_id:14342 Sulfobacillus thermosulfidooxidans str. BC1 2.30.7.1.3862 OTU 1 seq prokMSA_id:17688 Pasteuria sp. NA 2.30.7.1.3864 OTU 1 seq prokMSA_id:14347 Alicyclobacillus acidocaldarius str. TDBrock 115-8 ATCC 4303 2.30.7.1.3897 OTU 3 seqs prokMSA_id:14351 gram neg iron oxidizing related to isolates BC and ALV clone prokMSA_id:21716 BU138 prokMSA_id:38687 Sulfobacillus sp. K55 2.30.7.1.3915 OTU 2 seqs prokMSA_id:14331 Bacillus tusciae DSM 2912 prokMSA_id:85455 Bacillus tusciae 2.30.7.2 B.SCHLEGELII 1 seq 2.30.7.2.3612 OTU 1 seq prokMSA_id:83619 Bacillus schlegelii 2.30.7.4 PAE.POLYMYXA_GROUP 213 seqs 2.30.7.4.1 PAE.MACQUARIENSIS_SUBGROUP 136 seqs 2.30.7.4.1.3274 OTU 1 seq prokMSA_id:73761 Paenibacillus sp. ikaite c7 isolate ikaite c7 2.30.7.4.1.3310 OTU 1 seq prokMSA_id:14368 Paenibacillus sp. str. vortex 2.30.7.4.1.3325 OTU 1 seq prokMSA_id:18657 Paenibacillus sp. CM1 2.30.7.4.1.3335 OTU 1 seq prokMSA_id:38089 Paenibacillus sp. LMG 20244 strain LMG 20244 2.30.7.4.1.3390 OTU 3 seqs prokMSA_id:14360 Paenibacillus illinoisensis str. 14 NRRL NRS-1356 prokMSA_id:77327 Paenibacillus sp. SAFN-035 prokMSA_id:78185 Paenibacillus illinoisensis 2.30.7.4.1.3413 OTU 2 seqs prokMSA_id:74125 Paenibacillus sp. 7-5 prokMSA_id:79325 clone AB04 AJ539171 2.30.7.4.1.3415 OTU 2 seqs prokMSA_id:84099 Paenibacillus nematophilus strain NEM1a prokMSA_id:85675 Paenibacillus nematophilus strain NEM1b 2.30.7.4.1.3549 OTU 1 seq prokMSA_id:14382 clone M45 2.30.7.4.1.3559 OTU 6 seqs prokMSA_id:14383 Paenibacillus sp. str. RS19 prokMSA_id:21436 Paenibacillus sp. TRO4 isolate TRO4 =LMG 19081 prokMSA_id:42642 Paenibacillus sp. isolate P15-9 prokMSA_id:46666 Paenibacillus turicensis clone B3 complete prokMSA_id:47416 Paenibacillus turicensis clone A3a complete prokMSA_id:47969 Paenibacillus turicensis clone B2 complete 2.30.7.4.1.3564 OTU 1 seq prokMSA_id:18675 Bacillus sp. USC14 complete 2.30.7.4.1.3565 OTU 3 seqs prokMSA_id:48149 Paenibacillus stellifer strain IS prokMSA_id:83547 Paenibacillus sp. 2002-56410 prokMSA_id:85150 Paenibacillus stellifer strain IS-5 AY099471 2.30.7.4.1.3577 OTU 22 seqs prokMSA_id:14359 Paenibacillus amylolyticus NRRL NRS-290 prokMSA_id:14362 Paenibacillus macquariensis str. 673 DSM 2 . X57305 prokMSA_id:14363 Bacillus longisporus LMG 13275. AJ223991 prokMSA_id:14365 Paenibacillus macquariensis str. 673 NCTC 10419 . X60625 prokMSA_id:19669 Paenibacillus sp. V2 prokMSA_id:21862 Low G+C Gram-positive D-St1-3 prokMSA_id:27118 Bacillus sp. FE1 prokMSA_id:40008 Bacillus sp. BE1 prokMSA_id:51524 Low G+C Gram-positive S-St1-6A prokMSA_id:55541 Paenibacillus sp. p22D prokMSA_id:72202 Paenibacillus amylolyticus prokMSA_id:77701 Paenibacillus amylolyticus AB073190 prokMSA_id:78079 Paenibacillus pabuli prokMSA_id:78345 Paenibacillus macquariensis AB073193 prokMSA_id:78619 Paenibacillus sp. 2216.15.16 prokMSA_id:84855 Bacillus sp. 'Smarlab BioMol-2301285' AY230772 prokMSA_id:90362 Glacier FJS42 AY315170 prokMSA_id:91146 Paenibacillus sp. CC-SB818D1 AY337581 prokMSA_id:91452 H17 AY345554 prokMSA_id:91692 clone LWSR-64 AY345535 prokMSA_id:92017 Paenibacillus amylolyticus strain:KT5501 AB115960 prokMSA_id:96930 Paenibacillus sp. NAB13 AY395017 2.30.7.4.1.3608 OTU 1 seq prokMSA_id:49631 Paenibacillus turicensis clone B1 complete 2.30.7.4.1.3630 OTU 1 seq prokMSA_id:66508 clone cvf65054 2.30.7.4.1.3651 OTU 68 seqs prokMSA_id:14375 Paenibacillus sp. str. KM8 prokMSA_id:14376 Paenibacillus sp. str. KK19 prokMSA_id:14377 Paenibacillus sp. str. KK20 prokMSA_id:14378 Paenibacillus sp. str. KN24 prokMSA_id:14379 Paenibacillus sp. str. KN25 prokMSA_id:14380 Paenibacillus sp. str. HM26 prokMSA_id:14381 Paenibacillus sp. str. HM31 prokMSA_id:14384 Paenibacillus sp. str. TOD45 prokMSA_id:14428 Paenibacillus polymyxa IAM 13419 prokMSA_id:14429 Paenibacillus burgondia str. B2 prokMSA_id:14431 Paenibacillus polymyxa str. PMD230. AJ223988 prokMSA_id:14432 Paenibacillus polymyxa str. CF43. AJ223989 prokMSA_id:16360 Paenibacillus jamilae strain CECT 5266 prokMSA_id:20958 Paenibacillus kribbensis prokMSA_id:22251 Paenibacillus taejonensis prokMSA_id:27285 Paenibacillus sp. 172 prokMSA_id:28853 Paenibacillus sp. isolate P14-7 prokMSA_id:33249 T107 isolate T107 prokMSA_id:38958 Paenibacillus polymyxa strain DSM 36T prokMSA_id:42808 Paenibacillus polymyxa prokMSA_id:44105 Paenibacillus peoriae strain DSM 8320T prokMSA_id:50840 Paenibacillus sp. isolate P22-9 prokMSA_id:58395 Paenibacillus sp. isolate P51-3 prokMSA_id:64883 Paenibacillus polymyxa strain GBR-1 prokMSA_id:68756 Glacial ice G50-L2 prokMSA_id:71025 Paenibacillus fujiensis prokMSA_id:71723 Paenibacillus sp. 61724 prokMSA_id:77277 Earthworm gut MH72 prokMSA_id:77429 Paeniacillus sp. SAFN-016 prokMSA_id:77819 Paenibacillus macerans prokMSA_id:78234 Paenibacillus peoriae AB073186 prokMSA_id:78235 Paenibacillus chibensis AB073194 prokMSA_id:78279 Paenibacillus borealis prokMSA_id:78298 Paenibacillus glucanolyticus prokMSA_id:80385 B.circulans strain WSBC 20030 prokMSA_id:80571 B.circulans strain 1-77 prokMSA_id:82473 Paenibacillus sp. HSCC 1657 prokMSA_id:84469 Paenibacillus sp. 436-1 prokMSA_id:84777 Paenibacillus lactis strain MB 1871 AY257868 prokMSA_id:85775 Paenibacillus polymyxa prokMSA_id:89987 Paenibacillus polymyxa strain WY110 AY302439 prokMSA_id:89996 Paenibacillus elgii strain SD17 AY090110 prokMSA_id:90699 Paenibacillus polymyxa BS04 AY302187 prokMSA_id:92059 Paenibacillus polymyxa strain KCTC3717 AY359637 prokMSA_id:92097 Paenibacillus polymyxa strain GBR-501 AY359628 prokMSA_id:92100 Paenibacillus polymyxa strain GBR-11 AY359619 prokMSA_id:92110 Paenibacillus polymyxa strain GBR-462 AY359621 prokMSA_id:92170 Paenibacillus polymyxa strain GBR-515 AY359629 prokMSA_id:92191 Paenibacillus polymyxa strain GBR-602 AY359631 prokMSA_id:92246 Paenibacillus polymyxa strain GBR-485 AY359627 prokMSA_id:92257 Paenibacillus polymyxa strain KCTC1761 AY359634 prokMSA_id:92293 Paenibacillus polymyxa strain GBR-180 AY359616 prokMSA_id:92370 Paenibacillus polymyxa strain GBR-478 AY359626 prokMSA_id:92405 Paenibacillus polymyxa strain GBR-447 AY359620 prokMSA_id:92521 Paenibacillus polymyxa strain GBR-192 AY359617 prokMSA_id:92572 Paenibacillus polymyxa strain GBR-27 AY359615 prokMSA_id:92583 Paenibacillus polymyxa strain KCTC3554 AY359635 prokMSA_id:92624 Paenibacillus polymyxa strain GBR-477 AY359625 prokMSA_id:92641 Paenibacillus polymyxa strain KCTC1663 AY359633 prokMSA_id:92844 Paenibacillus polymyxa strain KCTC3627 AY359636 prokMSA_id:92846 Paenibacillus polymyxa strain GBR-472 AY359624 prokMSA_id:92852 Paenibacillus polymyxa strain GBR-540 AY359630 prokMSA_id:92866 Paenibacillus polymyxa strain GBR-464 AY359622 prokMSA_id:93032 Paenibacillus polymyxa strain GBR-465 AY359623 prokMSA_id:93129 Paenibacillus polymyxa strain GBR-603 AY359632 prokMSA_id:93130 Paenibacillus polymyxa strain GBR-325 AY359618 prokMSA_id:94822 Paenibacillus abekawaensis strain:MG1 AB119649 prokMSA_id:94987 Paenibacillus sp. g2 AY373363 2.30.7.4.1.3721 OTU 1 seq prokMSA_id:39149 Paenibacillus sp. TB9 2.30.7.4.1.3729 OTU 1 seq prokMSA_id:51119 Paenibacillus sp. SM-XY60 2.30.7.4.1.3751 OTU 3 seqs prokMSA_id:14415 Paenibacillus curdlanolyticus str. YK9 IFO 15724 . D78466 prokMSA_id:27161 sp. clone 1200-12 prokMSA_id:78004 Paenibacillus curdlanolyticus AB073202 2.30.7.4.1.3811 OTU 2 seqs prokMSA_id:67648 Paenibacillus sp. R-11600 prokMSA_id:71618 LMG 18437 strain LMG 18437 2.30.7.4.1.3824 OTU 6 seqs prokMSA_id:14367 Paenibacillus campinasensis str. 324 KCTC 0364BP prokMSA_id:69797 Paenibacillus sp. S39 prokMSA_id:71978 Paenibacillus sp. AG430 prokMSA_id:72049 Paenibacillus sp. 38-2 prokMSA_id:77903 Paenibacillus campinasensis prokMSA_id:85263 Paenibacillus sp. A11 2.30.7.4.1.3876 OTU 1 seq prokMSA_id:22513 Paenibacillus sp. G296-78 2.30.7.4.1.3905 OTU 1 seq prokMSA_id:22302 Paenibacillus turicensis clone A2 complete 2.30.7.4.1.3911 OTU 6 seqs prokMSA_id:14357 Paenibacillus lautus NRRL NRS-666 . D78473 prokMSA_id:14369 Paenibacillus lautus CCM 3892. D78472 prokMSA_id:50444 Paenibacillus sp. SB45-2B prokMSA_id:77752 Paenibacillus lautus prokMSA_id:78091 Paenibacillus lautus strain C2 prokMSA_id:83727 Paenibacillus sp. 6495m-C2 isolate 6495m-C2 2.30.7.4.1.3910 OTU 1 seq prokMSA_id:40899 Paenibacillus sp. isolate A-234 2.30.7.4.2 PAE.VALIDUS_SUBGROUP 64 seqs 2.30.7.4.2.3247 OTU 1 seq prokMSA_id:26683 Paenibacillus sp. DSM 34 strain DSM 34 2.30.7.4.2.3248 OTU 5 seqs prokMSA_id:14409 Bacillus viscosus ATCC 51155 prokMSA_id:35596 Bacillus ehimensis prokMSA_id:42610 Paenibacillus koreensis prokMSA_id:63561 Bacillus ehimensis strain KCTC3747 prokMSA_id:67227 Bacillus sp. NK395 2.30.7.4.2.3254 OTU 1 seq prokMSA_id:44415 Paenibacillus sp. DSM 1482 strain DSM 1482 2.30.7.4.2.3257 OTU 1 seq prokMSA_id:70633 synthetic wastewater tmbr15-20 complete 2.30.7.4.2.3264 OTU 1 seq prokMSA_id:54854 Paenibacillus sp. NBT 2.30.7.4.2.3312 OTU 3 seqs prokMSA_id:71863 synthetic wastewater tmbr11-29 complete prokMSA_id:71897 synthetic wastewater tmbr11-6 complete prokMSA_id:98371 Paenibacillus sp. R-7652 AY382189 2.30.7.4.2.3322 OTU 8 seqs prokMSA_id:35842 Paenibacillus naphthalenovorans strain PR-N5 prokMSA_id:51767 Paenibacillus naphthalenovorans strain PR-N1 prokMSA_id:71096 Paenibacillus naphthalenovorans strain PS-N1 AF353703 prokMSA_id:73273 Paenibacillus naphthalenovorans strain PR-N16 AF353690 prokMSA_id:81244 Paenibacillus sp. YK20 prokMSA_id:81558 Paenibacillus sp. YK5 AB091334 prokMSA_id:81627 Paenibacillus sp. YK19 prokMSA_id:82278 Paenibacillus sp. YK12 2.30.7.4.2.3329 OTU 4 seqs prokMSA_id:49008 Paenibacillus larvae subsp. pulvifaciens AY030080 prokMSA_id:49027 Paenibacillus larvae subsp. larvae prokMSA_id:77692 Paenibacillus larvae prokMSA_id:77802 Paenibacillus larvae 2.30.7.4.2.3409 OTU 1 seq prokMSA_id:14402 Paenibacillus alginolyticus str. 3 DSM 5050 2.30.7.4.2.3450 OTU 1 seq prokMSA_id:28165 Paenibacillus alvei strain DSM 29T 2.30.7.4.2.3465 OTU 1 seq prokMSA_id:14404 Bacillus edaphicus str. T7 VKPM B-7517 2.30.7.4.2.3468 OTU 1 seq prokMSA_id:14405 Bacillus mucilaginosus str. 1480D VKPM B-7519 2.30.7.4.2.3505 OTU 8 seqs prokMSA_id:14406 Paenibacillus validus DSM 3037 . S73541 prokMSA_id:14408 Paenibacillus validus DSM 3037 . D78320 prokMSA_id:27850 Bacillus sp prokMSA_id:37347 Paenibacillus validus strain DS-N1 AF353676 prokMSA_id:38639 Bacillus sp prokMSA_id:71092 Paenibacillus validus strain PR-P9 AF353697 prokMSA_id:74208 Paenibacillus validus strain PR-P1 AF353695 prokMSA_id:78225 Paenibacillus validus AB073203 2.30.7.4.2.3525 OTU 2 seqs prokMSA_id:40413 Bacillus chitinolyticus prokMSA_id:73805 Paenibacillus cf. polymyxa 2.30.7.4.2.3530 OTU 1 seq prokMSA_id:37854 Paenibacillus agardevorans strain DSM 1355 2.30.7.4.2.3535 OTU 2 seqs prokMSA_id:32167 firmicute clone SM1E07 AF445685 prokMSA_id:75026 earthworm intestine clone wi79 2.30.7.4.2.3567 OTU 1 seq prokMSA_id:14390 Paenibacillus sp. str. T-168 2.30.7.4.2.3568 OTU 1 seq prokMSA_id:14391 Paenibacillus sp. str. C-168 2.30.7.4.2.3584 OTU 1 seq prokMSA_id:14396 DA116 2.30.7.4.2.3591 OTU 1 seq prokMSA_id:43825 Paenibacillus sp. DS-1 2.30.7.4.2.3595 OTU 1 seq prokMSA_id:84807 Paenibacillus sp. MB 2039 2.30.7.4.2.3708 OTU 1 seq prokMSA_id:72157 Paenibacillus sp. 19508 2.30.7.4.2.3716 OTU 1 seq prokMSA_id:14413 Thermobacillus xylanolyticus str. XE 2.30.7.4.2.3720 OTU 1 seq prokMSA_id:17949 Paenibacillus velasolus 2.30.7.4.2.3731 OTU 1 seq prokMSA_id:48429 from anoxic bulk soil clone BSV79 2.30.7.4.2.3748 OTU 1 seq prokMSA_id:28736 Paenibacillus sp. AP-20 2.30.7.4.2.3787 OTU 1 seq prokMSA_id:50002 from anoxic bulk soil clone BSV44 2.30.7.4.2.3814 OTU 1 seq prokMSA_id:39587 Agricultural soil isolate SI-4 2.30.7.4.2.3819 OTU 1 seq prokMSA_id:31440 Paenibacillus sp. DSM 1481 strain DSM 1481 2.30.7.4.2.3857 OTU 2 seqs prokMSA_id:43033 SCBP-S17 prokMSA_id:73768 2.30.7.4.2.3877 OTU 2 seqs prokMSA_id:14386 Paenibacillus lentimorbus ATCC 14707 prokMSA_id:77770 Paenibacillus lentimorbus 2.30.7.4.2.3891 OTU 1 seq prokMSA_id:27231 Paenibacillus sp. DSM 1474 strain DSM 1474 2.30.7.4.2.3901 OTU 1 seq prokMSA_id:77934 Paenibacillus alginolyticus 2.30.7.4.2.3922 OTU 4 seqs prokMSA_id:14387 Paenibacillus popilliae ATCC 14706 . AF071859 prokMSA_id:14395 Paenibacillus popilliae NRRL B-4081 prokMSA_id:17491 Paenibacillus thiaminolyticus strain DSM 7262T prokMSA_id:78039 Paenibacillus popilliae 2.30.7.4.3 PAE.ALVEI_SUBGROUP 1 seq 2.30.7.4.3.3437 OTU 1 seq prokMSA_id:77745 Paenibacillus apiarius 2.30.7.4.4 PAE.MACERANS_SUBGROUP 1 seq 2.30.7.4.4.3263 OTU 1 seq prokMSA_id:34851 Paenibacillus sp. EE17 2.30.7.4.5 PAE.AZOTOFIXANS_SUBGROUP 1 seq 2.30.7.4.5.3735 OTU 1 seq prokMSA_id:14423 Paenibacillus azotofixans DSM 1735 2.30.7.4.6 PAE.POLYMYXA_SUBGROUP 10 seqs 2.30.7.4.6.3360 OTU 1 seq prokMSA_id:73496 Paenibacillus sp. LMG 20245 strain LMG 20245 2.30.7.4.6.3428 OTU 1 seq prokMSA_id:39053 Pietermaritzburg Y14-1 2.30.7.4.6.3445 OTU 2 seqs prokMSA_id:16553 str. 31295 prokMSA_id:28024 str. 31293 AF227859 2.30.7.4.6.3570 OTU 2 seqs prokMSA_id:62679 low G+C Gram-positive clone ML635J-5 prokMSA_id:63836 Bacillus sp. clone ML1228J-1 2.30.7.4.6.3711 OTU 1 seq prokMSA_id:27158 Paenibacillus hongkongensis 2.30.7.4.6.3745 OTU 1 seq prokMSA_id:62685 low G+C Gram-positive clone ML635J-45 2.30.7.4.6.3766 OTU 1 seq prokMSA_id:14430 Bacillus GL1 str. GL1 2.30.7.4.6.3793 OTU 1 seq prokMSA_id:34044 Pietermaritzburg Y14-3 2.30.7.5 BB.BREVIS_GROUP 34 seqs 2.30.7.5.3299 OTU 11 seqs prokMSA_id:14441 Brevibacillus borstelensis NRRL NRS-818 prokMSA_id:14444 Brevibacillus reuszeri NRRL NRS-1206 . D78464 prokMSA_id:25731 Brevibacillus sp. Riau prokMSA_id:48767 Brevibacterium sp. BN53-1 prokMSA_id:63084 Brevibacillus borstelensis strain LMG 15536 AF378230 prokMSA_id:67396 Brevibacillus sp. AV-Pb prokMSA_id:71869 Brevibacillus sp. HC6 prokMSA_id:72424 Brevibacillus agri strain LMG 18172 AF378233 prokMSA_id:91137 Brevibacillus borstelensis strain:M63 AB116134 prokMSA_id:94939 Brevibacillus borstelensis strain R-7201 AY373322 prokMSA_id:97889 Brevibacillus sp. R-6469 AY397767 2.30.7.5.3316 OTU 2 seqs prokMSA_id:14435 Brevibacillus thermoruber str. BT2 DSM 7064 . Z26921 prokMSA_id:20029 Brevibacillus sp. SL8 2.30.7.5.3625 OTU 1 seq prokMSA_id:22135 Metal-contaminated soil clone K20-03 2.30.7.5.3641 OTU 1 seq prokMSA_id:38999 Brevibacillus sp. MN 47.2a isolate MN 47.2a 2.30.7.5.3664 OTU 1 seq prokMSA_id:32738 SBR1071 2.30.7.5.3746 OTU 1 seq prokMSA_id:30464 SBR2013 2.30.7.5.3775 OTU 1 seq prokMSA_id:14438 clone K20-27 2.30.7.5.3797 OTU 1 seq prokMSA_id:14445 Brevibacillus laterosporus IAM 12455 2.30.7.5.3884 OTU 1 seq prokMSA_id:40165 Brevibacillus sp. MC-Z complete 2.30.7.5.3888 OTU 1 seq prokMSA_id:70010 TM7LH20 2.30.7.5.3917 OTU 13 seqs prokMSA_id:14436 Brevibacillus agri NRRL NRS-1689 prokMSA_id:14442 Brevibacillus parabrevis IFO 12334 prokMSA_id:14449 Brevibacillus choshinensis str. HPD52. D78459 prokMSA_id:14451 Brevibacillus agri NRRL NRS-1219 prokMSA_id:27343 Brevibacillus agri complete strain:MC-C1 prokMSA_id:34619 Brevibacillus sp. clone KL-13-4-4 prokMSA_id:38327 Brevibacillus sp. clone KL-13-4-10 prokMSA_id:44838 Brevibacillus agri strain:M1-5 prokMSA_id:55876 Brevibacillus sp. EK-287 prokMSA_id:60320 Brevibacillus sp. YT-658 prokMSA_id:72419 Brevibacillus invocatus strain LMG 18167 prokMSA_id:79457 Brevibacillus brevis prokMSA_id:82855 Brevibacillus sp. R-12868 2.30.7.6 AB.ANEURINILYTICUS_GROUP 26 seqs 2.30.7.6.319 OTU 1 seq prokMSA_id:14469 Ammoniphilus oxalaticus str. RAOx-FF 2.30.7.6.3282 OTU 2 seqs prokMSA_id:14465 Oxalophagus oxalicus str. Alt Ox1 DSM 5503 prokMSA_id:14466 Oxalophagus oxalicus str. Alt Ox1 DSM 5503 2.30.7.6.3407 OTU 1 seq prokMSA_id:14462 Thermoactinomyces sacchari ATCC 27349 2.30.7.6.3539 OTU 3 seqs prokMSA_id:22272 Thermoactinomyces sacchari KCTC 9790 complete AF138737 prokMSA_id:25830 Thermoactinomyces thalpophilus KCTC 9789 complete AF138738 prokMSA_id:70190 Thermoactinomyces thalpophilus 2.30.7.6.3619 OTU 4 seqs prokMSA_id:14463 Thermoactinomyces vulgaris ATCC 43649 prokMSA_id:43719 Thermoactinomyces albus prokMSA_id:63755 Thermoactinomyces vulgaris strain RVH210302 prokMSA_id:66466 clone cvf77073 2.30.7.6.3640 OTU 2 seqs prokMSA_id:26206 Thermoactinomyces putidus KCTC 3666 complete prokMSA_id:33006 Thermoactinomyces putidus 2.30.7.6.3668 OTU 1 seq prokMSA_id:22975 Thermoactinomyces peptonophilus KCTC 9740 complete 2.30.7.6.3677 OTU 5 seqs prokMSA_id:14454 Aneurinibacillus migulanus ATCC 9999 prokMSA_id:14455 Bacillus acidovorans ATCC 51159 prokMSA_id:14456 Aneurinibacillus migulanus DSM 2895 prokMSA_id:14457 Aneurinibacillus aneurinilyticus ATCC 12856 prokMSA_id:14458 Aneurinibacillus aneurinilyticus DSM 5562 2.30.7.6.3790 OTU 5 seqs prokMSA_id:14460 Aneurinibacillus thermoaerophilus str. L420-91 DSM 10154 prokMSA_id:14461 Aneurinibacillus thermoaerophilus DSM 10155 prokMSA_id:38737 Bacillus sp. HC5 prokMSA_id:71633 synthetic wastewater tmbr15-26 complete prokMSA_id:72629 synthetic wastewater tmbr15-12 complete AF309813 2.30.7.6.3828 OTU 1 seq prokMSA_id:51632 Aneurinibacillus sp. DB4 2.30.7.6.625 OTU 1 seq prokMSA_id:14467 Ammoniphilus oxalivorans str. RAOx-FS DSM 11537 2.30.7.7 B.HORTI_SUBGROUP 3 seqs 2.30.7.7.3427 OTU 1 seq prokMSA_id:14473 str. HTA454 2.30.7.7.3867 OTU 2 seqs prokMSA_id:14471 Bacillus horti str. K13 JCM 9943 prokMSA_id:14472 Bacillus 5215 str. 5215 2.30.7.8 MRC.HALOPHILUS_SUBGROUP 4 seqs 2.30.7.8.3444 OTU 1 seq prokMSA_id:14476 str. MBIC3303 2.30.7.8.3442 OTU 1 seq prokMSA_id:14475 Marinococcus halophilus DSM 20408 2.30.7.8.3752 OTU 1 seq prokMSA_id:14474 Marinococcus halophilus NCIMB 2178 2.30.7.8.3925 OTU 1 seq prokMSA_id:82109 Marinococcus sp. 3019cM 2.30.7.9 SPOROLACTOBACILLUS_GROUP 132 seqs 2.30.7.9.1 SPL.INULINUS_SUBGROUP 14 seqs 2.30.7.9.1.3324 OTU 10 seqs prokMSA_id:14478 Sporolactobacillus laevis str. M-103 IAM 12387 prokMSA_id:14479 Sporolactobacillus racemicus str. M-116 IAM 14264 prokMSA_id:14480 Bacillus myxolacticus str. M-105 IAM 12326 prokMSA_id:14481 Sporolactobacillus racemicus str. M-17 IAM 12396 prokMSA_id:14482 Sporolactobacillus laevis str. M-114 IAM 12388 prokMSA_id:14483 Bacillus laevolacticus str. M-1 IAM 12322 prokMSA_id:14484 Sporolactobacillus laevis str. M-18 IAM 14263 prokMSA_id:14486 Bacillus laevolacticus str. M-8 IAM 12321 prokMSA_id:14488 Bacillus laevolacticus str. M-14 IAM 12318 prokMSA_id:14491 Sporolactobacillus racemicus str. M-16 IAM 12395 2.30.7.9.1.3882 OTU 4 seqs prokMSA_id:14477 Sporolactobacillus inulinus JCM 6014 prokMSA_id:14489 Sporolactobacillus racemicus str. M-86 IAM 12384 prokMSA_id:14490 Sporolactobacillus inulinus NRIC 1134 prokMSA_id:79523 Sporolactobacillus inulinus 2.30.7.9.2 B.RACEMILACTICUS 1 seq 2.30.7.9.2.3520 OTU 1 seq prokMSA_id:14492 Bacillus racemilacticus str. M-5 IAM 12319 2.30.7.9.3 B.ALCALOPHILUS_SUBGROUP 117 seqs 2.30.7.9.3.3321 OTU 2 seqs prokMSA_id:16416 sp. Lake Natron isolate 103NT4 prokMSA_id:26833 sp. Lake Elmenteita isolate WE1 2.30.7.9.3.3365 OTU 1 seq prokMSA_id:63834 Bacillus sp. clone ML615J-19 2.30.7.9.3.3399 OTU 1 seq prokMSA_id:36300 sp. Lake Natron isolate 105NT4 2.30.7.9.3.3419 OTU 1 seq prokMSA_id:86553 Bacillus sp. KMM 3737 2.30.7.9.3.3424 OTU 1 seq prokMSA_id:76003 clone Gitt-KF-76 2.30.7.9.3.3440 OTU 1 seq prokMSA_id:16919 Bacillus sp. JMM-4 2.30.7.9.3.3443 OTU 1 seq prokMSA_id:23244 Bacillus sp. N-4 2.30.7.9.3.3453 OTU 1 seq prokMSA_id:33780 Desulfonosporus thiosulfogenes 2.30.7.9.3.3484 OTU 1 seq prokMSA_id:46652 sp. Little Lake Magadi isolate 95LM4 2.30.7.9.3.3503 OTU 1 seq prokMSA_id:16669 Bacillus sp. YUA25 2.30.7.9.3.3502 OTU 4 seqs prokMSA_id:14509 Bacillus sp. DSM 8722. X76446 prokMSA_id:14510 Bacillus sp. DSM 8719. X76443 prokMSA_id:70984 Bacillus sp. LMG 21005 strain LMG 21005 AJ316316 prokMSA_id:77491 Bacillus gibsonii strain SAFN-015 2.30.7.9.3.3506 OTU 1 seq prokMSA_id:44577 sp. Lake Nakuru isolate 18N1 2.30.7.9.3.3511 OTU 2 seqs prokMSA_id:16790 Hailaer soda lake F23 prokMSA_id:29235 Bacillus sp. KSM-K38 complete 2.30.7.9.3.3532 OTU 1 seq prokMSA_id:14499 Bacillus sp. DSM 8720 2.30.7.9.3.3531 OTU 1 seq prokMSA_id:14497 Bacillus arsenicoselenatis str. E1H 2.30.7.9.3.3556 OTU 1 seq prokMSA_id:46071 Bacillus sp. C-11 2.30.7.9.3.3580 OTU 1 seq prokMSA_id:29964 sp. Lake Bogoria isolate 9B1 2.30.7.9.3.3622 OTU 1 seq prokMSA_id:44055 sp. Lake Elmenteita isolate 3E1 2.30.7.9.3.3624 OTU 26 seqs prokMSA_id:14493 Bacillus sp. DSM 8718 prokMSA_id:14495 Bacillus sp. str. C-125 prokMSA_id:17467 Bacillus sp. GTC855 prokMSA_id:21800 Bacillus sp. GTC854 prokMSA_id:22552 Bacillus sp. A-59 prokMSA_id:28745 Bacillus halodurans genomic section 3/14 AP001509 prokMSA_id:36945 Bacillus sp. 202-1 AB043844 prokMSA_id:37869 Bacillus halodurans strain DSM 497T AJ302709 prokMSA_id:38836 Bacillus sp. C-3 AB043847 prokMSA_id:40528 Bacillus halodurans prokMSA_id:42445 Bacillus halodurans prokMSA_id:46768 Bacillus halodurans genomic section 1/14 AP001507 prokMSA_id:52107 Bacillus halodurans complete prokMSA_id:53117 Bacillus halodurans ygaG orf ygxA rrnH- rrnH-23S rrnH-5S trn prokMSA_id:53545 Bacillus halodurans dnaX yaaK recR yaaL bofA rrnB- rrnB-23S prokMSA_id:53774 Bacillus halodurans lysS rrnC- trn-Ile trn-Ala rrnC-23S rrnC prokMSA_id:53960 Bacillus halodurans orf1 orf2 kbaA ybaN rrnE- rrnE-23S rrnE- prokMSA_id:54054 Bacillus halodurans complete genome NC_002570 prokMSA_id:54430 Bacillus halodurans C-125 23S 5S and genes and tRNA-Ala Arg prokMSA_id:54477 Bacillus halodurans ydcI ydcK trn-Asn trn-Ser trn-Glu trn-Va prokMSA_id:54543 Bacillus halodurans orf1 orf2 - -23S -5S yaaC guaB and compl prokMSA_id:54652 Bacillus halodurans yvgQ rrnG- trn-lle trn-Ala rrnG-23S trn- prokMSA_id:69133 Bacillus halodurans genomic section 4/14 AP001510 prokMSA_id:71735 Bacillus halodurans genomic section 2/14 AP001508 prokMSA_id:94086 Bacillus halodurans isolate 314 AF542087 prokMSA_id:94116 Bacillus halodurans isolate 34 AF542086 2.30.7.9.3.3633 OTU 44 seqs prokMSA_id:14496 Bacillus sp. DSM 8715 prokMSA_id:14504 Bacillus sp. DSM 8724 prokMSA_id:14505 Bacillus alcalophilus DSM 485 prokMSA_id:14506 Bacillus alcaliinulinus str. AM31 prokMSA_id:14511 Bacillus sp. DSM 8716 prokMSA_id:14512 Bacillus Enterogermina str. Enterogermina prokMSA_id:14513 Bacillus sp. DSM 8717 prokMSA_id:14515 Bacillus 4830 str. 4830. AF078814 prokMSA_id:14516 Bacillus sp. DSM 8714 prokMSA_id:16342 Bacillus clausii prokMSA_id:17073 Bacillus clausii strain za-w-3 prokMSA_id:18096 Bacillus clausii prokMSA_id:20318 Bacillus pseudofirmus complete prokMSA_id:21446 Bacillus clausii strain SIN Enterogermina AJ297494 prokMSA_id:22363 Bacillus sp. O-4 prokMSA_id:24084 sp. Lake Bogoria isolate 66B4 prokMSA_id:24551 Bacillus clausii strain LMG 19634 prokMSA_id:25923 Bacillus sp. XE22-4-1 AF326122 prokMSA_id:31103 Bacillus sp. N-1 prokMSA_id:32171 Bacillus sp. ikaite 27 isolate ikaite 27 prokMSA_id:34505 Bacillus clausii strain SIN84 Enterogermina AJ297498 prokMSA_id:36285 Bacillus halodurans strain:AH-101 prokMSA_id:37519 Bacillus sp. 169 prokMSA_id:37620 Bacillus sp. 17-1 prokMSA_id:37901 Bacillus clausii strain T Enterogermina AJ297493 prokMSA_id:38275 Bacillus sp. 27-1 prokMSA_id:40868 Bacillus sp. 13 prokMSA_id:41599 Bacillus sp. K12-5 prokMSA_id:42836 Bacillus clausii strain N/R Enterogermina AJ297492 prokMSA_id:42958 Bacillus clausii strain O/C84 Enterogermina AJ297495 prokMSA_id:42999 Bacillus clausii strain N/R84 Enterogermina AJ297496 prokMSA_id:46525 Bacillus clausii strain T84 Enterogermina AJ297497 prokMSA_id:46785 Bacillus sp. 2b-2 AB043857 prokMSA_id:47686 Bacillus sp. 8-1 AB043842 prokMSA_id:47837 Bacillus pseudofirmus strain FTU prokMSA_id:49611 Bacillus clausii strain O/C Enterogermina AJ297491 prokMSA_id:55141 Bacillus clausii strain GMBAE 42 complete prokMSA_id:63157 Salibacillus sp. YIM-kkny3 prokMSA_id:69971 Bacillus sp. IC prokMSA_id:70502 Bacillus sp. NER strain NER prokMSA_id:71598 Bacillus clausii strain LMG 19610 prokMSA_id:72213 Bacillus sp. WW3-SN6 prokMSA_id:73573 Bacillus sp. H167 prokMSA_id:76944 Clostridium sp. clone Sh765B-AG-44 2.30.7.9.3.3643 OTU 1 seq prokMSA_id:14503 Bacillus vedderi str. JaH 2.30.7.9.3.3645 OTU 2 seqs prokMSA_id:45141 Bacillus sp. KSM-S237 prokMSA_id:73180 Bacillus sp. 1139 2.30.7.9.3.3649 OTU 1 seq prokMSA_id:24847 Bacillus sp. OS-5 strain OS-5 2.30.7.9.3.3653 OTU 1 seq prokMSA_id:14507 Bacillus alcalophilus DSM 485 2.30.7.9.3.3661 OTU 1 seq prokMSA_id:78617 Bacillus sp. 2216.25.2 2.30.7.9.3.3667 OTU 1 seq prokMSA_id:23919 sp. Lake Nakuru isolate 17N1 2.30.7.9.3.3688 OTU 1 seq prokMSA_id:77521 Bacillus sp. SAFN-006 2.30.7.9.3.3730 OTU 1 seq prokMSA_id:59480 Bacillus baekryungensis 2.30.7.9.3.3747 OTU 2 seqs prokMSA_id:41956 Bacillus sp. C-59-2 prokMSA_id:42049 Bacillus sp. 135 2.30.7.9.3.3781 OTU 1 seq prokMSA_id:17639 Hailaer soda lake T1 2.30.7.9.3.3785 OTU 2 seqs prokMSA_id:71532 Bacillus decolorationis prokMSA_id:72277 Bacillus decolorationis strain LMG 21001 AJ316304 2.30.7.9.3.3844 OTU 2 seqs prokMSA_id:14500 Bacillus sp. DSM 8721 prokMSA_id:70518 Bacillus sp. S2 2.30.7.9.3.3848 OTU 1 seq prokMSA_id:78009 Bacillus sp. TUT1007 2.30.7.9.3.3875 OTU 1 seq prokMSA_id:31334 Bacillus sp. AM-001 2.30.7.9.3.3879 OTU 1 seq prokMSA_id:40983 sp. Lake Elmenteita isolate WE4 2.30.7.9.3.3893 OTU 3 seqs prokMSA_id:18610 Bacillus sp prokMSA_id:21885 str. 47083 prokMSA_id:26954 Bacillus sp. A6 AF333090 2.30.7.9.3.3920 OTU 1 seq prokMSA_id:23337 Hailaer soda lake T10 2.30.7.9.3.3926 OTU 1 seq prokMSA_id:26101 sp. Lake Bogoria isolate 64B4 2.30.7.10 B.MEGATERIUM_GROUP 428 seqs 2.30.7.10.1 B.STEAROTHERMOPHILUS_SUBGROUP 134 seqs 2.30.7.10.1.234 OTU 13 seqs prokMSA_id:14528 Bacillus caldovelox DSM 411 prokMSA_id:14543 Bacillus thermoleovorans DSM 5366 prokMSA_id:14551 Bacillus caldolyticus DSM 405 prokMSA_id:23576 Bacillus vulcani strain 3S-1 prokMSA_id:28593 Geobacillus sacchari prokMSA_id:35138 Bacillus sp. G2 prokMSA_id:57566 Geobacillus sp. T1 complete prokMSA_id:60458 Geobacillus lituanicus complete prokMSA_id:70432 Geobacillus thermoleovorans isolate I80 prokMSA_id:70679 Geobacillus thermoleovorans isolate T70 prokMSA_id:71742 Geobacillus thermoleovorans isolate T80 prokMSA_id:78662 Bacillus thermoleovorans isolate CCR11 prokMSA_id:85270 Geobacillus thermoleovorans strain G1 2.30.7.10.1.283 OTU 5 seqs prokMSA_id:14555 Bacillus thermocatenulatus DSM 730 prokMSA_id:42405 Bacillus stearothermophilus strain DSM 22T prokMSA_id:60459 Geobacillus stearothermophilus strain 3 complete prokMSA_id:60460 Geobacillus stearothermophilus strain 32A complete prokMSA_id:74615 Geobacillus stearothermophilus strain 28 complete 2.30.7.10.1.305 OTU 2 seqs prokMSA_id:14564 Bacillus thermoleovorans ATCC 43513 prokMSA_id:14567 Bacillus kaustophilus NCIMB 8547 2.30.7.10.1.3249 OTU 17 seqs prokMSA_id:14518 Bacillus flavothermus DSM 2641. Z26932 prokMSA_id:14519 Bacillus flavothermus DSM 2641. AF004589 prokMSA_id:14520 Bacillus sp. str. k-1 prokMSA_id:14521 Bacillus flavothermus str. AB001. AF001960 prokMSA_id:14522 Bacillus flavothermus str. AB002. AF001961 prokMSA_id:14524 Bacillus flavothermus str. AB004. AF001963 prokMSA_id:14525 Bacillus flavothermus str. AB005. AF001964 prokMSA_id:14526 str. BD5-12. AB015568 prokMSA_id:41783 Bacillus sp. OS-ac-18 U46747 prokMSA_id:66045 Anoxybacillus kamchatkensis AF510985 prokMSA_id:78530 Bacillus sp. YMY1010 AY198416 prokMSA_id:83767 Anoxybacillus gonensis strain A7 AY248708 prokMSA_id:84072 Anoxybacillus gonensis strain A4 AY248707 prokMSA_id:84979 Anoxybacillus kestanbolinensis strain K1 AY248709 prokMSA_id:85315 Anoxybacillus gonensis strain A2 AY248706 prokMSA_id:85346 Anoxybacillus kestanbolinensis strain K2 AY248710 prokMSA_id:85404 Anoxybacillus kestanbolinensis strain K4 AY248711 2.30.7.10.1.3269 OTU 1 seq prokMSA_id:14531 Bacillus stearothermophilus str. NUB3621 2.30.7.10.1.3300 OTU 1 seq prokMSA_id:14541 Bacillus sp. str. MH-1 2.30.7.10.1.3301 OTU 5 seqs prokMSA_id:64299 Hyperthermophilic OGL-7B prokMSA_id:78614 Thermoactinomyces sp. 700375 prokMSA_id:78806 Thermoactinomyces sp. H0165 prokMSA_id:78838 Thermoactinomyces sp. C0170 prokMSA_id:78879 Thermoactinomyces sp. 500275 2.30.7.10.1.3332 OTU 1 seq prokMSA_id:14559 str. HTA1422 2.30.7.10.1.3331 OTU 1 seq prokMSA_id:14558 unnamed organism 2.30.7.10.1.3350 OTU 1 seq prokMSA_id:14569 Bacillus sp. str. ICPS10 2.30.7.10.1.3373 OTU 1 seq prokMSA_id:27737 Bacillus sp. Isopa5 2.30.7.10.1.3460 OTU 13 seqs prokMSA_id:14534 Bacillus thermodenitrificans str. OHT-1 prokMSA_id:14535 Bacillus thermodenitrificans. M77487 prokMSA_id:14536 Bacillus thermodenitrificans str. NS prokMSA_id:14538 Bacillus thermodenitrificans str. T4 prokMSA_id:14539 Bacillus stearothermophilus str. K1041 prokMSA_id:23251 Geobacillus uzenensis strain X prokMSA_id:26066 Geobacillus subterraneus strain K prokMSA_id:45180 Geobacillus anatolicus strain SB prokMSA_id:46206 Geobacillus subterraneus strain 34 prokMSA_id:67723 Bacillus sp. TS-3 prokMSA_id:73417 Geobacillus uzenensis strain U prokMSA_id:74097 Geobacillus uralicus AY079151 prokMSA_id:88427 Geobacillus jurassicus strain DS1 AY312404 2.30.7.10.1.3508 OTU 1 seq prokMSA_id:44578 Symbiobacterium toebii 2.30.7.10.1.3516 OTU 1 seq prokMSA_id:34691 Thermoactinomyces dichotomicus KCTC 3667 complete 2.30.7.10.1.3515 OTU 9 seqs prokMSA_id:14530 Bacillus caldoxylolyticus str. S1812 ATCC 700356. AF067651 prokMSA_id:27372 Bacillus sp. S1b-3 strain S1b-3 prokMSA_id:69206 Geobacillus caldoxylosilyticus isolate B70 AJ489326 prokMSA_id:71319 Bacillus thermoterrestris strain TS2A prokMSA_id:74137 Bacillus thermoterrestris strain TS24A prokMSA_id:86077 Geobacillus caldoxylosilyticus strain TK4 AY248718 prokMSA_id:86870 Geobacillus caldoxylosilyticus isolate F17 AJ564610 prokMSA_id:87339 Geobacillus caldoxylosilyticus isolate Tj AJ564618 prokMSA_id:96582 Geobacillus sp. R-7653 AY397769 2.30.7.10.1.3540 OTU 21 seqs prokMSA_id:14544 Bacillus thermoleovorans str. H41 prokMSA_id:14545 Bacillus thermoleovorans str. B23 prokMSA_id:14550 str. HTA1418 prokMSA_id:18188 Bacillus sp. Cimanggu prokMSA_id:25595 Bacillus stearothermophilus prokMSA_id:34397 Bacillus sp. YNPRH2P-2 prokMSA_id:39078 Bacillus sp. S prokMSA_id:40665 Bacillus sp. Papandayan prokMSA_id:55616 Bacillus sp. A3 prokMSA_id:56299 Bacillus sp. B2 prokMSA_id:58655 Bacillus sp. D1 prokMSA_id:58659 Bacillus sp. V0 prokMSA_id:58669 Bacillus sp. G62 prokMSA_id:58677 Bacillus sp. E2 prokMSA_id:58679 Bacillus sp. B6 prokMSA_id:58680 Bacillus sp. B7 prokMSA_id:58681 Bacillus sp. B5 prokMSA_id:58682 Bacillus sp. B4 prokMSA_id:58685 Bacillus sp. B1 prokMSA_id:58687 Bacillus sp. B3 prokMSA_id:73016 Bacillus thermoleovorans complete 2.30.7.10.1.3571 OTU 2 seqs prokMSA_id:14557 Bacillus TA2.A1 str. TA2.A1 prokMSA_id:33289 Bacillus sp. TX3 2.30.7.10.1.3763 OTU 1 seq prokMSA_id:17121 Bacillus sp. Isopa9 2.30.7.10.1.3776 OTU 25 seqs prokMSA_id:14542 Bacillus pallidus DSM 3670 prokMSA_id:14566 Bacillus sp. DSM 2349 prokMSA_id:19352 Bacillus sp. B-3 prokMSA_id:56614 Bacillus sp. IZ3 prokMSA_id:58658 Bacillus sp. IZ5 prokMSA_id:58660 Bacillus sp. IZ4 prokMSA_id:58661 Bacillus sp. H6 prokMSA_id:58662 Bacillus sp. H2 prokMSA_id:58663 Bacillus sp. H4 prokMSA_id:58664 Bacillus sp. H5 prokMSA_id:58665 Bacillus sp. H3 prokMSA_id:58666 Bacillus sp. H1 prokMSA_id:58667 Bacillus sp. G8 AB089226 prokMSA_id:58668 Bacillus sp. G7 prokMSA_id:58670 Bacillus sp. G5 prokMSA_id:58671 Bacillus sp. G3 prokMSA_id:58672 Bacillus sp. G2 AB089220 prokMSA_id:58673 Bacillus sp. G1 prokMSA_id:58674 Bacillus sp. F2 prokMSA_id:58675 Bacillus sp. E3 prokMSA_id:58676 Bacillus sp. F1 prokMSA_id:58678 Bacillus sp. E1 prokMSA_id:74568 Bacillus sp. G4 prokMSA_id:87853 Geobacillus sp. isolate F16 AJ564609 prokMSA_id:87910 Geobacillus sp. isolate Td AJ564615 2.30.7.10.1.3836 OTU 4 seqs prokMSA_id:14548 str. HTA426 prokMSA_id:14549 str. HTA462 prokMSA_id:58656 Bacillus sp. G6 AB089239 prokMSA_id:58657 Bacillus sp. VA2 2.30.7.10.1.385 OTU 1 seq prokMSA_id:14552 Bacillus stearothermophilus str. T10 2.30.7.10.1.3859 OTU 1 seq prokMSA_id:41281 Thermoactinomyces sanguinis 2.30.7.10.1.3871 OTU 4 seqs prokMSA_id:14560 str. HTA1417 prokMSA_id:14561 str. HTA1420. AB002650 prokMSA_id:14562 str. HTA1416. AB002651 prokMSA_id:14563 str. HTA1415 2.30.7.10.1.462 OTU 1 seq prokMSA_id:14533 Bacillus denitrificans DSM 466 2.30.7.10.1.571 OTU 1 seq prokMSA_id:14568 Bacillus caldotenax DSM 406 2.30.7.10.1.829 OTU 1 seq prokMSA_id:78768 Geobacillus sp. YMTC1049 2.30.7.10.2 B.SMITHII_SUBGROUP 4 seqs 2.30.7.10.2.3635 OTU 1 seq prokMSA_id:76677 Bacillus eolicus strain 4-1T 2.30.7.10.2.3896 OTU 3 seqs prokMSA_id:14573 Bacillus smithii DSM 4216 . Z26935 prokMSA_id:23483 Bacillus sp. C7 prokMSA_id:94287 Bacillus smithii strain R-7170 AY373319 2.30.7.10.3 B.METHANOLICUS_SUBGROUP 6 seqs 2.30.7.10.3.3280 OTU 1 seq prokMSA_id:41508 maize root Zmrc174 2.30.7.10.3.3291 OTU 2 seqs prokMSA_id:14575 Bacillus methanolicus str. C1 NCIMB 13114 prokMSA_id:14578 Bacillus methanolicus str. C1 NCIMB 13114 2.30.7.10.3.3384 OTU 1 seq prokMSA_id:14576 clone RFN44 2.30.7.10.3.3779 OTU 2 seqs prokMSA_id:14577 Bacillus infernus str. TH-22 =SMCC/W 478 prokMSA_id:14581 Bacillus infernus str. TH-23 =SMCC/W 479 2.30.7.10.4 B.SPOROTHERMODURANS_SUBGROUP 46 seqs 2.30.7.10.4.3272 OTU 1 seq prokMSA_id:33595 compost 4-75 2.30.7.10.4.3349 OTU 11 seqs prokMSA_id:14594 Bacillus thermoamylovorans str. DKP CNCM I-1378 prokMSA_id:18183 Bacillus sp. strain TGS537 AB020196 prokMSA_id:33604 Bacillus sp. G11 AY062014 prokMSA_id:41225 compost 4-50 AB034714 prokMSA_id:44525 Bacillus sp. strain TGS650 AB020197 prokMSA_id:79671 B.circulans strain WSBC 20060 Y13064 prokMSA_id:79728 B.circulans strain WSBC 20061 Y13065 prokMSA_id:91159 Bacillus circulans isolate B from South Africa AY294321 prokMSA_id:91989 Bacillus circulans isolate B from Poland AY294319 prokMSA_id:96928 Lactobacter thermoamylovorans isolate ISR01 Y14141 prokMSA_id:97746 Bacillus thermoamylovorans AB121094 2.30.7.10.4.3391 OTU 4 seqs prokMSA_id:34699 pPD14 prokMSA_id:35194 pPD4 prokMSA_id:36181 pPD13 prokMSA_id:45759 pPD12 2.30.7.10.4.3411 OTU 1 seq prokMSA_id:16783 Bacillus carboniphilus 2.30.7.10.4.3417 OTU 1 seq prokMSA_id:34734 Bacillus sp. MB-11 2.30.7.10.4.3469 OTU 3 seqs prokMSA_id:14591 Bacillus oleronius str. Rt 10 DSM 9356 prokMSA_id:14592 Bacillus sp. str. Termite isolate iv. X81130 prokMSA_id:48382 Bacillus oleronius AF393508 2.30.7.10.4.3473 OTU 1 seq prokMSA_id:14593 clone DA136 2.30.7.10.4.3581 OTU 1 seq prokMSA_id:17956 Bacillus sp. strain TGS137 2.30.7.10.4.3743 OTU 1 seq prokMSA_id:66467 clone cvf77034 2.30.7.10.4.3757 OTU 4 seqs prokMSA_id:14596 Bacillus 115898 str. 115898 prokMSA_id:16862 Bacillus sp. TAT105 prokMSA_id:25041 Bacillus sp. TAT112 prokMSA_id:98060 Bacillus sp. R-6488 AY397764 2.30.7.10.4.3827 OTU 7 seqs prokMSA_id:24269 soil clone 911-1 prokMSA_id:24811 soil clone 432-1 prokMSA_id:55942 Bacillus aquaemaris strain TF-12 AF483625 prokMSA_id:69789 LMG 18435 strain LMG 18435 prokMSA_id:71698 Bacillus acidogenesis prokMSA_id:72894 Bacillus sp. SG-1 AF326373 prokMSA_id:90462 Bacillus vietnamensis AB099708 2.30.7.10.4.3845 OTU 3 seqs prokMSA_id:43776 compost 4-11 prokMSA_id:47302 compost 4-74 prokMSA_id:51860 pPD15 2.30.7.10.4.3856 OTU 2 seqs prokMSA_id:14588 Bacillus IPso1 str. IPso1 prokMSA_id:14589 Bacillus IPso2 str. IPso2 2.30.7.10.4.3895 OTU 5 seqs prokMSA_id:14584 Bacillus sporothermodurans str. M215 DSM 10599 prokMSA_id:14585 Bacillus sporothermodurans str. M215 DSM 10599 prokMSA_id:14587 Bacillus sporothermodurans str. M215 DSM 10599 prokMSA_id:19142 Bacillus sporothermodurans strain LMG 17897 MB 372 AJ302941 prokMSA_id:27057 Bacillus sporothermodurans strain LMG 17883 MB 385 AJ302942 2.30.7.10.4.3916 OTU 1 seq prokMSA_id:28732 compost 4-57 2.30.7.10.5 VR.PANTOTHENTICUS_SUBGROUP 55 seqs 2.30.7.10.5.3265 OTU 1 seq prokMSA_id:70340 Virgibacillus carmonensis strain LMG 20964 T 2.30.7.10.5.3268 OTU 1 seq prokMSA_id:19694 Lentibacillus salicampi 2.30.7.10.5.3308 OTU 1 seq prokMSA_id:42141 Bacillus sp. MB-9 2.30.7.10.5.3309 OTU 2 seqs prokMSA_id:14608 Virgibacillus pantothenticus IAM 11061 prokMSA_id:42215 Virgibacillus pantothenticus strain:M1-4 2.30.7.10.5.3320 OTU 1 seq prokMSA_id:16928 Filobacillus milensis 2.30.7.10.5.3344 OTU 9 seqs prokMSA_id:39733 Halobacillus sp. K3-1 strain K3-1 prokMSA_id:60368 Bacillaceae PH28 AF513472 prokMSA_id:60380 Bacillaceae LA42 prokMSA_id:63146 Halobacillus sp. YIM-kkny15 AY121438 prokMSA_id:63158 Halobacillus sp. YIM-kkny2 prokMSA_id:71975 Halobacillus sp. I7 strain I7 AJ291754 prokMSA_id:72101 Halobacillus sp. I3 strain I3 AJ291753 prokMSA_id:80237 Halobacillus locisalis prokMSA_id:92555 Halobacillus sp. D-8 AY351395 2.30.7.10.5.3367 OTU 1 seq prokMSA_id:21848 Bacillus nitritophilus strain IB-256 2.30.7.10.5.3408 OTU 2 seqs prokMSA_id:41371 Bacillus halophilus prokMSA_id:42873 Bacillus halophilus strain DSM 4771T 2.30.7.10.5.3429 OTU 1 seq prokMSA_id:40994 compost 4-49 2.30.7.10.5.3447 OTU 1 seq prokMSA_id:32515 Halobacillus sp. AB007 2.30.7.10.5.3480 OTU 1 seq prokMSA_id:47685 Bacillus litoralis strain IB-B4 2.30.7.10.5.3488 OTU 1 seq prokMSA_id:66685 Halobacillus salinus strain HSL-3 2.30.7.10.5.3552 OTU 1 seq prokMSA_id:56418 Paraliobacillus ryukyuensis 2.30.7.10.5.3554 OTU 1 seq prokMSA_id:34922 Bacillus litoralis strain IB-B8 2.30.7.10.5.3582 OTU 2 seqs prokMSA_id:14616 Sporosarcina ureae prokMSA_id:14617 Halobacillus halophilus NCIMB 2269 2.30.7.10.5.3603 OTU 1 seq prokMSA_id:63156 Amphibacillus sp. YIM-kkny6 2.30.7.10.5.3692 OTU 1 seq prokMSA_id:22996 Hailaer soda lake F10 2.30.7.10.5.3700 OTU 1 seq prokMSA_id:23741 marine AS-39 2.30.7.10.5.3702 OTU 1 seq prokMSA_id:62835 Amphibacillus xylanus strain DSM 6626 2.30.7.10.5.3712 OTU 1 seq prokMSA_id:14603 Gracilibacillus dipsosauri str. DD1 2.30.7.10.5.3714 OTU 6 seqs prokMSA_id:14611 firmicute strain HTE831 prokMSA_id:59386 Oceanobacillus iheyensis complete genome NC_004193 prokMSA_id:59715 Oceanobacillus iheyensis genomic section 8/13 prokMSA_id:59716 Oceanobacillus iheyensis genomic section 3/13 prokMSA_id:59718 Oceanobacillus iheyensis genomic section 4/13 prokMSA_id:59720 Oceanobacillus iheyensis genomic section 1/13 AP004593 2.30.7.10.5.3718 OTU 1 seq prokMSA_id:14604 Gracilibacillus halotolerans str. NN 2.30.7.10.5.3726 OTU 2 seqs prokMSA_id:14612 Bacillus marismortui str. 123 prokMSA_id:73885 Bacillus permians complete 2.30.7.10.5.3734 OTU 1 seq prokMSA_id:14609 Virgibacillus proomii LMG 12370 2.30.7.10.5.3749 OTU 1 seq prokMSA_id:14615 Marinococcus albus DSM 20748 2.30.7.10.5.3756 OTU 1 seq prokMSA_id:63140 Salibacillus sp. YIM-kkny16 2.30.7.10.5.3769 OTU 1 seq prokMSA_id:63145 Gracilibacillus sp. YIM-kkny13 2.30.7.10.5.3780 OTU 1 seq prokMSA_id:46172 Virgibacillus necropolis 2.30.7.10.5.3849 OTU 3 seqs prokMSA_id:14614 Halobacillus litoralis str. SL-4 DSM 10405 prokMSA_id:44334 Halobacillus trueperi strain DSM 10404T prokMSA_id:66422 Halobacillus karajiensis strain DSM 14948 2.30.7.10.5.3868 OTU 3 seqs prokMSA_id:37471 Bacillus sp. 19490 prokMSA_id:55867 Bacillus sp. BacB10 AF497256 prokMSA_id:73499 Bacillus endophyticus 2.30.7.10.5.3892 OTU 2 seqs prokMSA_id:39395 Bacillus halodenitrificans prokMSA_id:87957 Bacillus sp. NT16 AJ488179 2.30.7.10.5.3913 OTU 2 seqs prokMSA_id:14602 Bacillus sp. str. WN13 DSM 5271 prokMSA_id:26016 Bacillus haloalkaliphilus 2.30.7.10.6 B.BADIUS_SUBGROUP 5 seqs 2.30.7.10.6.3343 OTU 1 seq prokMSA_id:14621 Bacillus '112442 JS2' str. 112442 JS2 2.30.7.10.6.3377 OTU 3 seqs prokMSA_id:47208 Bacillus sp. UM14 AF354665 prokMSA_id:68753 Glacial ice G200-N5 prokMSA_id:73402 Bacillus sp. 76992 2.30.7.10.6.3609 OTU 1 seq prokMSA_id:14620 Bacillus badius ATCC 14574 2.30.7.10.7 B.LENTUS_SUBGROUP 10 seqs 2.30.7.10.7.3339 OTU 1 seq prokMSA_id:28803 Bacillus sp. N6 2.30.7.10.7.3351 OTU 1 seq prokMSA_id:14624 Bacillus benzoevorans str. YEO5 2.30.7.10.7.3438 OTU 1 seq prokMSA_id:39686 Bacillus sp. HT-1 2.30.7.10.7.3509 OTU 1 seq prokMSA_id:50925 Bacillus benzoevorans 2.30.7.10.7.3610 OTU 3 seqs prokMSA_id:32275 Bacillus sp. TH64 prokMSA_id:40353 Bacillus sp. TP81 prokMSA_id:71600 Bacillus sp. TP50 2.30.7.10.7.3636 OTU 1 seq prokMSA_id:49517 Bacillus sp. strain TGS337 2.30.7.10.7.3725 OTU 1 seq prokMSA_id:76722 Bacillus sp. strain R-6760 2.30.7.10.7.3805 OTU 1 seq prokMSA_id:24211 Bacillus sp. VAN26 2.30.7.10.8 B.PSEUDOMEGATERIUM_SUBGROUP 115 seqs 2.30.7.10.8.3283 OTU 39 seqs prokMSA_id:14627 str. 5-28 prokMSA_id:16708 soil clone 912-1 prokMSA_id:19733 from anoxic bulk soil clone BSV84 prokMSA_id:29974 Bacillus sp. 19498 prokMSA_id:34978 Bacillus niacini prokMSA_id:39569 from anoxic bulk soil clone BSV77 prokMSA_id:40603 from anoxic bulk soil clone BSV71 prokMSA_id:69987 Bacillus sp. R-10919 prokMSA_id:71081 Bacillus fumarioli strain LMG 17489 prokMSA_id:71713 Bacillus fumarioli strain LMG 18418 prokMSA_id:72371 Bacillus sp. LMG 20241 strain LMG 20241 prokMSA_id:72486 Bacillus fumarioli strain LMG 17492 prokMSA_id:73777 Bacillus fumarioli strain LMG 18409 prokMSA_id:75807 Clostridium sp. clone Sh765B-TzT-30 prokMSA_id:77044 Bacillaceae clone GR21 AY150889 prokMSA_id:77359 Bacillus niacini strain SAFN-019 prokMSA_id:77431 Bacillus niacini strain SAFN-021 prokMSA_id:77490 Bacillus niacini strain SAFN-011 prokMSA_id:81120 Bacillus soli strain LMG 21839 prokMSA_id:81371 Bacillus novalis strain LMG 21836 prokMSA_id:81794 Bacillus vireti strain LMG 21834 prokMSA_id:82044 Bacillus novalis strain LMG 21835 prokMSA_id:82239 Bacillus soli strain LMG 21838 prokMSA_id:82298 Bacillus soli strain LMG 21840 prokMSA_id:86709 Bacillus sp. IDA1908 isolate IDA1908 AJ563505 prokMSA_id:86727 Bacillus sp. IDA1851 isolate IDA1851 AJ563503 prokMSA_id:86802 Bacillus sp. IDA2156 isolate IDA2156 AJ563506 prokMSA_id:86808 Bacillus sp. IDA1626 isolate IDA1626 AJ563495 prokMSA_id:86839 Bacillus sp. IDA3293 isolate IDA3293 AJ563510 prokMSA_id:87008 Bacillus sp. IDA2265 isolate IDA2265 AJ563497 prokMSA_id:87027 Bacillus sp. IDA3493 isolate IDA3493 AJ563512 prokMSA_id:87069 Bacillus sp. IDA2021 isolate IDA2021 AJ563534 prokMSA_id:87340 Bacillus sp. IDA1928 isolate IDA1928 AJ563502 prokMSA_id:87407 Bacillus sp. IDA1790 isolate IDA1790 AJ563501 prokMSA_id:87465 Bacillus sp. IDA1692 isolate IDA1692 AJ563504 prokMSA_id:87850 Bacillus sp. IDA2290 isolate IDA2290 AJ563499 prokMSA_id:87857 Bacillus sp. IDA1746 isolate IDA1746 AJ563500 prokMSA_id:88007 Bacillus sp. IDA3428 isolate IDA3428 AJ563511 prokMSA_id:88009 Bacillus sp. IDA3120 isolate IDA3120 AJ563509 2.30.7.10.8.3355 OTU 1 seq prokMSA_id:14626 Bacillus pseudomegaterium ATCC 49866 2.30.7.10.8.3388 OTU 1 seq prokMSA_id:14631 DA015 2.30.7.10.8.3403 OTU 1 seq prokMSA_id:14638 Bacillus IDA624 str. IDA624 2.30.7.10.8.3414 OTU 1 seq prokMSA_id:74752 TzT-JG-1-2 2.30.7.10.8.3439 OTU 43 seqs prokMSA_id:14628 clone DA154 prokMSA_id:14632 DA011 Y07580 prokMSA_id:14637 Bacillus IDA216 str. IDA216 prokMSA_id:14640 DA134 prokMSA_id:14641 clone DA036. AJ000981 prokMSA_id:14644 Bacillus IDA629 str. IDA629. AJ132749 prokMSA_id:14656 Bacillus 171544 str. 171544. AF071856 prokMSA_id:14680 Bacillus cohnii DSM 6307 . X76437 prokMSA_id:14682 Bacillus cohnii str. ML-A10. AF140014 prokMSA_id:14683 Bacillus cohnii str. YN-2000. AB023412 prokMSA_id:16306 DA056 mark02 prokMSA_id:21215 Bacillus sp. PL-12 AF326366 prokMSA_id:26501 Bacillus sp. Y AB055095 prokMSA_id:29621 Bacillus sp. D6 AB043849 prokMSA_id:29984 Bacillus sp. SD521 AB055096 prokMSA_id:31965 Bacillus sp. 199 AB043861 prokMSA_id:36408 soil clone 716-1 AF423287 prokMSA_id:39292 Hailaer soda lake F6 AF275705 prokMSA_id:46286 DA001 mark03 prokMSA_id:52613 Bacillus psychrosaccharolyticus prokMSA_id:65500 Bacillus macroides strain HAMBI2406 AF501367 prokMSA_id:65513 Bacillus macroides strain HAMBI2395 AF501351 prokMSA_id:68750 Glacial ice G200-T19 AF479351 prokMSA_id:69411 Bacillus pichinotyi strain RS13 AF519463 prokMSA_id:69694 Bacillus casamancensis AF519462 prokMSA_id:70528 Bacillus sp. Domas clone A4 AF228798 prokMSA_id:70683 Bacillus pichinotyi strain RS1 AF519460 prokMSA_id:70759 Bacillus sp. 19493 AJ315061 prokMSA_id:71049 Bacillus sp. YY complete prokMSA_id:71589 Bacillus pichinotyi strain RS2 AF519464 prokMSA_id:73206 Bacillus sp. 19495 AJ315063 prokMSA_id:73528 Bacillus macroides strain HAMBI2375 AF501337 prokMSA_id:76322 Clostridium sp. clone Sh765B-TzT-70 AJ519638 prokMSA_id:77312 Bacillus benzoevorans strain SAFN-025 prokMSA_id:77545 Bacillus benzoevorans strain SAFN-024 prokMSA_id:88158 Bacillus sp. IDA3504 isolate IDA3504 AJ544784 prokMSA_id:89731 Bacillus sp. IDA1527 isolate IDA1527 AJ544783 prokMSA_id:91002 K93 AY345455 prokMSA_id:91142 K2-83 AY345482 prokMSA_id:91782 K2-77 AY345487 prokMSA_id:91798 K34 AY345475 prokMSA_id:91938 R5B AY345357 prokMSA_id:96553 clone S441 AY382610 2.30.7.10.8.3448 OTU 1 seq prokMSA_id:27759 isolate B4 2.30.7.10.8.3476 OTU 3 seqs prokMSA_id:85077 clone:ALU14 prokMSA_id:85484 clone:ALU30 prokMSA_id:86563 clone:ALU31 2.30.7.10.8.3495 OTU 1 seq prokMSA_id:17518 pPD7 2.30.7.10.8.3589 OTU 8 seqs prokMSA_id:33764 from anoxic bulk soil clone BSV04 prokMSA_id:69114 Bacillus senegalensis strain RS6 prokMSA_id:69468 Bacillus arbutinivorans prokMSA_id:69657 Bacillus djibelorensis prokMSA_id:72679 Bacillus senegalensis strain RS8 prokMSA_id:81391 Bacillus drentensis strain LMG 21830 prokMSA_id:81770 Bacillus bataviensis strain LMG 21833 prokMSA_id:81960 Bacillus bataviensis strain LMG 21832 2.30.7.10.8.3617 OTU 1 seq prokMSA_id:48416 from anoxic bulk soil clone BSV45 2.30.7.10.8.3639 OTU 7 seqs prokMSA_id:27556 Virgibacillus picturae strain LMG 19492 T AJ315060 prokMSA_id:28572 Bacillus sp. MB-7 prokMSA_id:28827 Bacillus sp. MB-3 prokMSA_id:35899 Bacillus sp. MB-1 prokMSA_id:39597 Virgibacillus picturae strain LMG-19416 prokMSA_id:63154 YIM-kkny4 prokMSA_id:70179 Virgibacillus picturae strain LMG 20959 2.30.7.10.8.3644 OTU 1 seq prokMSA_id:27496 from anoxic bulk soil clone BSV05 2.30.7.10.8.3650 OTU 1 seq prokMSA_id:35487 clone P3IB-17 2.30.7.10.8.3671 OTU 1 seq prokMSA_id:70428 I-110 2.30.7.10.8.3689 OTU 1 seq prokMSA_id:54667 soil clone 335-1 2.30.7.10.8.3758 OTU 1 seq prokMSA_id:63143 Amphibacillus sp. YIM-kkny10 2.30.7.10.8.3861 OTU 2 seqs prokMSA_id:26443 from anoxic bulk soil clone BSV55 prokMSA_id:43113 from anoxic bulk soil clone BSV46 2.30.7.10.8.3878 OTU 1 seq prokMSA_id:14642 DA066 2.30.7.10.9 B.FIRMUS_SUBGROUP 8 seqs 2.30.7.10.9.1050 OTU 1 seq prokMSA_id:14647 Bacillus firmus IAM 12464 2.30.7.10.9.246 OTU 1 seq prokMSA_id:85211 Bacillus sp. 6160m-C1 isolate 6160m-C1 2.30.7.10.9.3295 OTU 1 seq prokMSA_id:22928 Bacillus sp. VAN35 2.30.7.10.9.3574 OTU 1 seq prokMSA_id:46942 Thermoactinomyces kribbensis 2.30.7.10.9.3742 OTU 2 seqs prokMSA_id:14648 Bacillus marinus DSM 1297 prokMSA_id:23280 Bacillus marinus 2.30.7.10.9.3744 OTU 1 seq prokMSA_id:17006 Bacillus sp. FO-092 2.30.7.10.9.429 OTU 1 seq prokMSA_id:14646 Bacillus firmus NCIMB 9366 2.30.7.10.10 B.CIRCULANS_SUBGROUP 2 seqs 2.30.7.10.10.3454 OTU 1 seq prokMSA_id:14659 Bacillus benzoevorans NCIMB 12555 2.30.7.10.10.3623 OTU 1 seq prokMSA_id:46961 Bacillus circulans 2.30.7.10.11 B.SIMPLEX_SUBGROUP 24 seqs 2.30.7.10.11.3337 OTU 8 seqs prokMSA_id:45468 Bacillus sp. Kaza-34 prokMSA_id:46809 Bacillus sp. LMG 20238 strain LMG 20238 prokMSA_id:52516 Bacillus sp. isolate P53-2 prokMSA_id:68732 Glacial ice SB100-8-1-1 prokMSA_id:71264 Bacillus macroides strain KL-009 prokMSA_id:75028 Bacillus sp. 'kanghwensis' prokMSA_id:75224 Clostridium sp. clone Sh765B-TzT-27 prokMSA_id:77384 Bacillus macroides strain SAFN-005 2.30.7.10.11.3401 OTU 1 seq prokMSA_id:81206 Bacillus sp. HJ16 2.30.7.10.11.3456 OTU 1 seq prokMSA_id:75255 Bacillaceae clone glen99_20 2.30.7.10.11.3474 OTU 1 seq prokMSA_id:14667 unnamed organism 2.30.7.10.11.3500 OTU 7 seqs prokMSA_id:14668 Bacillus macroides str. dhr2 prokMSA_id:26376 Bacillus sp. LMG 21002 strain LMG 21002 prokMSA_id:33158 Bacillus sp. 19489 prokMSA_id:68730 Glacial ice SB150-2A2 prokMSA_id:72962 Bacillus sp. 19491 prokMSA_id:73022 Bacillus sp. 19494 prokMSA_id:82125 Bacillus sp. HJ8 2.30.7.10.11.3555 OTU 5 seqs prokMSA_id:14666 Bacillus macroides NCDO 1661 prokMSA_id:25387 Bacillus macroides strain JPL-4 prokMSA_id:31293 soil clone 1296-1 prokMSA_id:68488 Bacillus simplex strain DSM 1321T prokMSA_id:68767 Glacial ice G500K-17 2.30.7.10.11.3899 OTU 1 seq prokMSA_id:14669 DA032 2.30.7.10.12 B.MEGATERIUM_SUBGROUP 19 seqs 2.30.7.10.12.3546 OTU 1 seq prokMSA_id:41058 Bacillus megaterium isolate B70 2.30.7.10.12.3550 OTU 18 seqs prokMSA_id:17758 Bacillus sp. No.51 AB066344 prokMSA_id:20365 Bacillus sp. No.49 AB066347 prokMSA_id:22479 Bacillus megaterium strain KL-197 AY030338 prokMSA_id:23021 Bacillus sp. No.61 prokMSA_id:28208 Bacillus sp. 19497 AJ315065 prokMSA_id:33074 Bacillus megaterium strain KL-181 prokMSA_id:36437 Bacillus sp. No.44 AB066339 prokMSA_id:36736 Bacillus sp. No.54 AB066345 prokMSA_id:60442 Bacillus sp. Fa29 prokMSA_id:68766 Glacial ice G500K-18 prokMSA_id:74302 Bacillus sp. LMG 20240 strain LMG 20240 prokMSA_id:77310 Bacillus megaterium strain SAFR-038 AY167862 prokMSA_id:77319 Bacillus megaterium strain SAFR-040 AY167861 prokMSA_id:77353 Bacillus megaterium strain SAFN-040 prokMSA_id:77354 Bacillus megaterium strain SAFN-002 prokMSA_id:77554 Bacillus megaterium strain SAFR-011 AY167865 prokMSA_id:81504 Bacillus megaterium plasmid pBM400 complete NC_004604 prokMSA_id:81816 Bacillus megaterium plasmid pBM400 complete AF142677 2.30.7.11 B.SUBTILIS_GROUP 243 seqs 2.30.7.11.1 B.COHNII_SUBGROUP 19 seqs 2.30.7.11.1.3277 OTU 1 seq prokMSA_id:47996 Bacillus sp. KL-152 2.30.7.11.1.3362 OTU 1 seq prokMSA_id:83070 Bacillus horikoshii 2.30.7.11.1.3375 OTU 1 seq prokMSA_id:30044 soil clone 1448-1 2.30.7.11.1.3426 OTU 1 seq prokMSA_id:72071 Bacillus sp. strain LMG-19415 2.30.7.11.1.3472 OTU 1 seq prokMSA_id:23879 Low G+C Gram-positive MPD-63 2.30.7.11.1.3562 OTU 1 seq prokMSA_id:55982 Glacial ice G500K-19 2.30.7.11.1.3715 OTU 2 seqs prokMSA_id:41580 Bacillus sp. NAF001 prokMSA_id:46547 Bacillus sp. jshs2 AY039821 2.30.7.11.1.3728 OTU 1 seq prokMSA_id:26043 Bacillus naganoensis 2.30.7.11.1.3732 OTU 1 seq prokMSA_id:14681 clone DA026 2.30.7.11.1.3886 OTU 3 seqs prokMSA_id:14684 str. HTA437 prokMSA_id:14685 str. HTA506 prokMSA_id:96883 Bacillus sp. R-6782 AY422984 2.30.7.11.1.3904 OTU 6 seqs prokMSA_id:14679 Bacillus sp. DSM 8723 prokMSA_id:31425 Bacillus sp. KX6 prokMSA_id:41217 Bacillus sp. KSM-KP43 prokMSA_id:42189 Bacillus horikoshii prokMSA_id:45974 Bacillus sp. NCIB12289 prokMSA_id:68751 Glacial ice G200-T16 2.30.7.11.2 EXG.ACETYLICUM_SUBGROUP 37 seqs 2.30.7.11.2.3252 OTU 8 seqs prokMSA_id:14691 Exiguobacterium aurantiacum NCDO 2321 prokMSA_id:14695 clone SB-22. AF029046 prokMSA_id:30620 SB22/GOBB3-111 AF321049 prokMSA_id:40417 str. 61610 prokMSA_id:48885 Hailaer soda lake Z8 prokMSA_id:73436 CHA3-116 clone CHA3-116 AJ132738 prokMSA_id:75706 Exiguobacterium sp. B10 isolate B10 AJ518821 prokMSA_id:91390 K2-67 AY345407 2.30.7.11.2.3256 OTU 1 seq prokMSA_id:26493 NoosaAW69 2.30.7.11.2.3255 OTU 2 seqs prokMSA_id:29825 NoosaAW16 AF269015 prokMSA_id:52292 NoosaAW57 2.30.7.11.2.3266 OTU 1 seq prokMSA_id:62984 Exiguobacterium sp. clone T6-7 rrn 2.30.7.11.2.3338 OTU 2 seqs prokMSA_id:28796 NoosaAW12 prokMSA_id:71763 NoosaAW79 2.30.7.11.2.3464 OTU 1 seq prokMSA_id:34290 TM7LH17 2.30.7.11.2.3614 OTU 3 seqs prokMSA_id:14689 Exiguobacterium sp prokMSA_id:32124 Exiguobacterium aff. acetylicum C/C-aer/b prokMSA_id:72912 Exiguobacterium undae strain L2 2.30.7.11.2.3642 OTU 1 seq prokMSA_id:49147 SBR2004 2.30.7.11.2.3679 OTU 4 seqs prokMSA_id:83017 clone D37 prokMSA_id:84507 clone D113 prokMSA_id:86567 clone D41 prokMSA_id:86668 clone D45 AY274161 2.30.7.11.2.3710 OTU 1 seq prokMSA_id:29374 NoosaAW93 2.30.7.11.2.3754 OTU 4 seqs prokMSA_id:27345 Exiguobacterium aurantiacum var. Colo. Road AY047481 prokMSA_id:40496 Marine NBF29 AF343950 prokMSA_id:81209 Exiguobacterium sp. BTAH1 prokMSA_id:93699 Exiguobacterium acetylicum AY297792 2.30.7.11.2.3755 OTU 3 seqs prokMSA_id:14687 Exiguobacterium acetylicum prokMSA_id:14688 Exiguobacterium acetylicum NCIMB 9889 prokMSA_id:68746 Glacial ice SB12K-2-2 2.30.7.11.2.3765 OTU 1 seq prokMSA_id:14694 Bacillus sp. str. S2-97 2.30.7.11.2.3826 OTU 1 seq prokMSA_id:71959 NoosaAW01 2.30.7.11.2.3841 OTU 1 seq prokMSA_id:23156 clone d152 2.30.7.11.2.3847 OTU 1 seq prokMSA_id:18919 Potato plant root clone RC-III-8 2.30.7.11.2.3855 OTU 1 seq prokMSA_id:44986 low G+C Gram-positive clone MPD-16 2.30.7.11.2.3923 OTU 1 seq prokMSA_id:14692 str. BD4-8 2.30.7.11.4 B.PUMILUS_SUBGROUP 30 seqs 2.30.7.11.4.3345 OTU 6 seqs prokMSA_id:17740 Bacillus pumilus A586 prokMSA_id:18224 Bacillus pumilus strain FO-038 prokMSA_id:49034 Bacillus pumilus strain FO-033 prokMSA_id:60383 Bacillaceae LA10 prokMSA_id:82717 Bacillus pumilus prokMSA_id:83670 Bacillus pumilus strain WN695 AY260860 2.30.7.11.4.3398 OTU 1 seq prokMSA_id:63742 Bacillus pumilus isolate EI-26-7 2.30.7.11.4.3441 OTU 1 seq prokMSA_id:48390 Bacillus sp. VAN13 2.30.7.11.4.3773 OTU 11 seqs prokMSA_id:18698 Bacillus pumilus complete sequense strain:M1-9-1 prokMSA_id:55661 Bacillus pumilus isolate EI-24-8 prokMSA_id:60382 Bacillaceae LA28 prokMSA_id:63739 Bacillus pumilus isolate EI-44-7 prokMSA_id:63740 Bacillus pumilus isolate EI-31-12 prokMSA_id:63741 Bacillus pumilus isolate EI-26-8 prokMSA_id:63743 Bacillus pumilus isolate EI-25-8 prokMSA_id:63747 Bacillus pumilus isolate EI-24-10 prokMSA_id:64988 Bacillus pumilus prokMSA_id:78259 Bacillus pumilus prokMSA_id:78969 Bacillus sp. 71a 2.30.7.11.4.3802 OTU 10 seqs prokMSA_id:14702 Bacillus pumilus str. OM-F6 prokMSA_id:19779 Bacillus pumilus strain KL-052 prokMSA_id:23057 Hailaer soda lake Z6 prokMSA_id:39910 Bacillus sp. 19499 prokMSA_id:63744 Bacillus pumilus isolate EI-26-5 prokMSA_id:77426 Bacillus pumilus prokMSA_id:77484 Bacillus pumilus prokMSA_id:77556 Bacillus pumilus prokMSA_id:82672 Bacillus pumilus strain WN694 prokMSA_id:86314 Bacillus pumilus strain WN691 2.30.7.11.4.3873 OTU 1 seq prokMSA_id:47807 Bacillus sp. VAN22 2.30.7.11.5 B.SUBTILIS_SUBGROUP 157 seqs 2.30.7.11.5.3273 OTU 1 seq prokMSA_id:14757 Bacillus subtilis str. A405 2.30.7.11.5.3328 OTU 16 seqs prokMSA_id:14725 Bacillus licheniformis str. Carlsberg strain NCIMB 6816. AF0 prokMSA_id:14726 Bacillus licheniformis str. North Carolina isolate PWD-1. AF prokMSA_id:22295 Bacillus sp. strain TGS850 prokMSA_id:23316 Bacillus licheniformis strain TRC-18-2-a AF047176 prokMSA_id:28540 Pseudobacillus carolinae prokMSA_id:29493 Bacillus sp. NW-Sp3AS AF333556 prokMSA_id:32682 Bacillus licheniformis strain FO-037 prokMSA_id:39451 Bacillus licheniformis strain FO-022a prokMSA_id:39932 Bacillus licheniformis strain ATCC 53757 AF204163 prokMSA_id:44403 Bacillus licheniformis strain FO-003 prokMSA_id:45947 Bacillus sp. NW-Sp3Y AF333558 prokMSA_id:51205 Bacillus sp. VAN04 prokMSA_id:51297 Bacillus licheniformis strain NCIMB 10689 AF204165 prokMSA_id:74705 Bacillus licheniformis strain ATCC 12759 AF204164 prokMSA_id:91855 clone W1A-D12 AY345521 prokMSA_id:96121 Bacillus licheniformis strain BCH290703B AY380831 2.30.7.11.5.3370 OTU 1 seq prokMSA_id:46318 Bacillus sp. strain TGS437 2.30.7.11.5.3385 OTU 1 seq prokMSA_id:77320 Bacillus licheniformis strain SAFN-031 2.30.7.11.5.3430 OTU 1 seq prokMSA_id:84164 Bacillus licheniformis strain A1 2.30.7.11.5.3491 OTU 2 seqs prokMSA_id:34421 Bacillus sp. PL-30 prokMSA_id:74659 Bacillus sp. MB-12 2.30.7.11.5.3492 OTU 21 seqs prokMSA_id:14718 Bacillus subtilis str. 168 prokMSA_id:14719 Bacillus subtilis = prokMSA_id:14740 Bacillus subtilis =rrnO prokMSA_id:14756 Bacillus subtilis subsp. spizizenii NRRL B-23049 prokMSA_id:14758 Bacillus subtilis str. PY79 prokMSA_id:14759 Bacillus subtilis str. OG-01-center prokMSA_id:14760 Bacillus subtilis ATCC 6633 prokMSA_id:14761 Bacillus subtilis str. BS62 prokMSA_id:17774 Bacillus subtilis strain N10 prokMSA_id:38003 Bacillus subtilis strain KL-077 prokMSA_id:52508 Bacillus licheniformis strain KL-164 prokMSA_id:63981 Bacillus subtilis prokMSA_id:73711 Bacillus subtilis complete prokMSA_id:74972 Bacillus subtilis strain BZ15 prokMSA_id:76151 Bacillus subtilis strain BHP6-1 prokMSA_id:76500 Bacillus subtilis strain GA1-5 prokMSA_id:76539 Bacillus subtilis strain STB29 prokMSA_id:76813 Bacillus subtilis strain WP1-21 prokMSA_id:76920 Bacillus subtilis strain HAZ2 prokMSA_id:83961 Bacillus subtilis prokMSA_id:84840 Bacillus subtilis strain WN696 2.30.7.11.5.3579 OTU 1 seq prokMSA_id:33993 Bacillus sp. strain TGS750 2.30.7.11.5.3606 OTU 1 seq prokMSA_id:32808 Bacillus subtilis A202 2.30.7.11.5.3627 OTU 2 seqs prokMSA_id:14750 Paenibacillus lautus NCIMB 12780. X60621 prokMSA_id:38338 Bacillus licheniformis strain SK-1 2.30.7.11.5.3659 OTU 6 seqs prokMSA_id:23159 Bacillus sp. PL-21 prokMSA_id:68788 Bacillus marisflavi strain TF-11 prokMSA_id:69296 Bacillus sp. AS-38 prokMSA_id:79525 Bacillus sp. JC1076 prokMSA_id:82070 Bacillus sp. CR1-2 prokMSA_id:94703 Bacillus sp. w5 AY373362 2.30.7.11.5.3656 OTU 1 seq prokMSA_id:69913 Bacillus licheniformis 2.30.7.11.5.3675 OTU 1 seq prokMSA_id:79819 Bacillus mojavensis 2.30.7.11.5.3706 OTU 1 seq prokMSA_id:30966 Bacillus sonorensis strain NRRL B-23155 2.30.7.11.5.3727 OTU 1 seq prokMSA_id:46107 Bacillus sp. strain TGS950 2.30.7.11.5.3818 OTU 6 seqs prokMSA_id:35852 Bacillus licheniformis strain KL-176 prokMSA_id:50052 Bacillus licheniformis strain EI-34-6 prokMSA_id:56458 Bacillus licheniformis AB111114 prokMSA_id:75073 Bacillus licheniformis strain HAZ6-17 prokMSA_id:75819 Bacillus licheniformis strain GA1-17 prokMSA_id:77543 Bacillus licheniformis strain Mo1 2.30.7.11.5.3820 OTU 1 seq prokMSA_id:40827 Bacillus subtilis strain KL-120 2.30.7.11.5.3831 OTU 1 seq prokMSA_id:36125 Bacillus licheniformis strain KL-068 2.30.7.11.5.3900 OTU 49 seqs prokMSA_id:14700 Bacillus sp. IFO 12605 prokMSA_id:14706 Bacillus Biosubtyl str. Biosubtyl prokMSA_id:14716 Bacillus amyloliquefaciens ATCC 23350 . X60605 prokMSA_id:14721 Bacillus licheniformis DSM 13 prokMSA_id:14723 Bacillus sp. str. Termite isolate v prokMSA_id:14724 Bacillus sp. str. GCB-2 prokMSA_id:14746 Bacillus subtilis str. TB11 prokMSA_id:17839 Bacillus subtilis strain LN002 prokMSA_id:17874 Bacillus subtilis strain Lactipan AJ277905 prokMSA_id:20533 Bacillus licheniformis strain FO-024 prokMSA_id:20987 Bacillus licheniformis strain FO-026 prokMSA_id:22715 Bacillus sonorensis strain NRRL B-23161 prokMSA_id:25728 Bacillus sonorensis strain NNRL B-23159 prokMSA_id:28357 Bacillus licheniformis strain KL-185 prokMSA_id:29247 Bacillus sonorensis strain NRRL B-23154 prokMSA_id:30814 Bacillus sonorensis strain NRRL B-23156 prokMSA_id:31469 Bacillus licheniformis strain FO-054 AF234857 prokMSA_id:32902 Bacillus subtilis A184 prokMSA_id:33178 Bacillus subtilis strain FO-029a prokMSA_id:34060 Bacillus sp. USC13 complete prokMSA_id:34751 Bacillus sonorensis strain NRRL B-23160 prokMSA_id:35577 Bacillus licheniformis strain FO-085 prokMSA_id:36519 Bacillus licheniformis strain KL-047 prokMSA_id:38139 Bacillus licheniformis strain PR-1 prokMSA_id:38198 Bacillus licheniformis strain KL-196 prokMSA_id:39670 Bacillus sonorensis strain NRRL B-23157 prokMSA_id:40513 Bacillus licheniformis prokMSA_id:41068 Bacillus pumilus strain FO-036b prokMSA_id:41451 pPD8 prokMSA_id:41964 Bacillus sonorensis strain NRRL B-23158 prokMSA_id:42423 Bacillus licheniformis strain FO-028 prokMSA_id:42774 Bacillus subtilis strain FO-032 prokMSA_id:44878 Bacillus licheniformis strain FO-074b prokMSA_id:45034 Bacillus subtilis prokMSA_id:45517 Bacillus licheniformis prokMSA_id:45582 Bacillus sp. strain TGS1050 prokMSA_id:46335 Bacillus mojavensis strain KL-154 prokMSA_id:46379 Bacillus licheniformis strain B prokMSA_id:53195 Bacillus licheniformis strain FO-017b prokMSA_id:55519 Bacillus sp. CGTase complete prokMSA_id:58334 Bacillus licheniformis prokMSA_id:60365 Bacillaceae PH32 prokMSA_id:64682 Bacillus licheniformis strain YW1258 prokMSA_id:71867 Bacillus sp. FO-035b prokMSA_id:73877 Bacillus licheniformis strain KL-182 prokMSA_id:76502 Bacillus subtilis strain MA12 prokMSA_id:77146 Bacillus licheniformis strain GA8 prokMSA_id:87398 Bacillus subtilis strain HA401 AY279207 prokMSA_id:94223 Bacillus subtilis AF545570 2.30.7.11.5.3909 OTU 34 seqs prokMSA_id:14720 Bacillus subtilis str. OG-01-fringe prokMSA_id:14731 Bacillus subtilis str. 168 = prokMSA_id:14732 Bacillus subtilis =rrnJ prokMSA_id:14734 Bacillus sp. str. SSA3 prokMSA_id:14741 Bacillus sp. str. PM3 prokMSA_id:14742 Bacillus sp. str. SS7 prokMSA_id:14743 Bacillus sp. str. SS9 prokMSA_id:14744 Bacillus sp. str. TKSP21 prokMSA_id:14745 Bacillus sp. str. TKSP24 prokMSA_id:14747 Bacillus subtilis ATCC 9799 prokMSA_id:14748 Bacillus subtilis ATCC 21331 prokMSA_id:14749 Bacillus subtilis str. 168 =rrnJ prokMSA_id:14751 Bacillus subtilis str. 168 =rrnO prokMSA_id:24519 Bacillus sp. YNPRH8P-2 prokMSA_id:25248 Bacillus mojavensis prokMSA_id:28010 Bacillus vallismortis prokMSA_id:31397 Bacillus subtilis prokMSA_id:36092 Bacillus subtilis var. chungkookjang complete prokMSA_id:38471 Bacillus sp. PP19-H3 prokMSA_id:43444 Bacillus atrophaeus prokMSA_id:50400 Bacillus subtilis strain O9 prokMSA_id:62519 Bacillus subtilis subsp. endophyticus prokMSA_id:68699 Bacillus amyloliquefaciens strain CMB01 prokMSA_id:68752 Glacial ice G200-SD1 prokMSA_id:72314 Bacillus sp. Bch1 complete prokMSA_id:74771 Bacillus sp. BBK-1 prokMSA_id:76767 Bacillus subtilis strain HAZ14 prokMSA_id:77829 Bacillus subtilis isolate BS-1 prokMSA_id:78407 Bacillus subtilis isolate BS-2 prokMSA_id:78621 Bacillus sp. X3 prokMSA_id:78627 Bacillus subtilis strain HJ19 prokMSA_id:78954 Bacillus subtilis strain HJ11 prokMSA_id:80904 Bacillus sp. B-6 prokMSA_id:84380 Bacillus sp. B1XC 2.30.7.11.5.3918 OTU 9 seqs prokMSA_id:14727 Bacillus subtilis NCDO 1769 prokMSA_id:14735 Bacillus subtilis =rrnG prokMSA_id:49632 Bacillus sp. clone KL-37-1-5 prokMSA_id:57756 Bacillus subtilis and -23S intergenic spacer complete ; and prokMSA_id:77901 Bacillus sp. TUT1010 prokMSA_id:78577 Bacillus subtilis strain B2 prokMSA_id:80665 Bacillus sp. B-2 prokMSA_id:84256 Bacillus subtilis strain IBT015 prokMSA_id:91214 Bacillus subtilis strain:KT1002 AB115958 2.30.7.12 STAPHYLOCOCCUS_GROUP 415 seqs 2.30.7.12.1 STAPHYLOCOCCUS_SUBGROUP 110 seqs 2.30.7.12.1.3258 OTU 6 seqs prokMSA_id:14763 Staphylococcus auricularis str. WK811M ATCC 33753 prokMSA_id:14785 Staphylococcus auricularis str. WK811M MAFF 911484 prokMSA_id:23774 Staphylococcus capitis prokMSA_id:64566 Staphylococcus sp. clone Gsetzeri3 prokMSA_id:64567 Staphylococcus sp. clone Gexpansis24 prokMSA_id:77340 Staphylococcus epidermidis strain SAFR-016 2.30.7.12.1.3284 OTU 1 seq prokMSA_id:14869 Staphylococcus sp. str. 05-41 2.30.7.12.1.3449 OTU 1 seq prokMSA_id:37919 CCUG 42722T 2.30.7.12.1.3545 OTU 6 seqs prokMSA_id:14784 str. HTA563 prokMSA_id:14817 Staphylococcus epidermidis prokMSA_id:14891 Staphylococcus epidermidis prokMSA_id:48424 Staphylococcus epidermidis strain JPL-7 prokMSA_id:64554 Staphylococcus sp. clone Gexpansis25 prokMSA_id:77574 Staphylococcus epidermidis ATCC 12228 section 7 of 9 of the 2.30.7.12.1.3569 OTU 8 seqs prokMSA_id:14762 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 prokMSA_id:14823 Staphylococcus xylosus MAFF 911482 prokMSA_id:63475 Staphylococcus sp. RA90 prokMSA_id:64738 Staphylococcus xylosus prokMSA_id:78763 Staphylococcus cohnii strain PLC-9 prokMSA_id:80662 Arctic sea ice bacterum ARK9973 prokMSA_id:91071 G24 AY345395 prokMSA_id:93337 Staphylococcus sp. An21 isolate An21 AJ551159 2.30.7.12.1.3585 OTU 2 seqs prokMSA_id:23434 Staphylococcus sp. ALE-3 5'- prokMSA_id:25754 Staphylococcus sp. ALE-3 2.30.7.12.1.3592 OTU 1 seq prokMSA_id:14862 Staphylococcus caprae DSM 20608 2.30.7.12.1.3605 OTU 6 seqs prokMSA_id:14828 Staphylococcus arlettae str. BP47 ATCC 43957 prokMSA_id:14901 Staphylococcus gallinarum str. VIII1 ATCC 35539 prokMSA_id:64557 Staphylococcus sp. clone 87-8 prokMSA_id:64564 Staphylococcus sp. clone 87-5 prokMSA_id:64565 Staphylococcus sp. clone 87-10 prokMSA_id:79759 Staphylococcus sp. B-3 2.30.7.12.1.3628 OTU 28 seqs prokMSA_id:14765 Staphylococcus pasteuri ATCC 51129 prokMSA_id:14771 Staphylococcus haemolyticus ATCC 29970 prokMSA_id:14786 Staphylococcus equorum ATCC 43958 prokMSA_id:14811 unnamed organism prokMSA_id:14814 Staphylococcus warneri ATCC 27836 prokMSA_id:14816 str. 2e prokMSA_id:14818 Staphylococcus hominis subsp. hominis ATCC 27844 prokMSA_id:14831 Staphylococcus kloosii str. SC210 ATCC 43959 prokMSA_id:14836 Staphylococcus hominis subsp. hominis ATCC 27844 prokMSA_id:14837 Staphylococcus sp. str. 1F-09 prokMSA_id:14857 Staphylococcus haemolyticus ATCC 29970 prokMSA_id:14859 Staphylococcus lugdunensis str. N860297 ATCC 43809 prokMSA_id:14864 Staphylococcus haemolyticus MAFF 911476 prokMSA_id:14867 Staphylococcus sp. str. 1F-23 prokMSA_id:14877 Staphylococcus saprophyticus subsp. saprophyticus str. NT75 prokMSA_id:14878 Staphylococcus pasteuri ATCC 51129 prokMSA_id:14893 Staphylococcus cohnii subsp. urealyticum str. CK27 ATCC 4933 prokMSA_id:29754 Staphylococcus sp. LMG 21006 strain LMG 21006 prokMSA_id:40009 Psychrophilic marine PS35 complete prokMSA_id:41763 Staphylococcus hominis strain JPL-5 prokMSA_id:52769 Staphylococcus sp. strain LMG-19417 prokMSA_id:62644 Staphylococcus linens prokMSA_id:64558 Staphylococcus sp. clone bottae4 prokMSA_id:64562 Staphylococcus sp. clone Gexpansis9 prokMSA_id:74413 Human oral C20 prokMSA_id:77345 Staphylococcus hominis strain SAFN-038 prokMSA_id:78094 Staphylococcus nepalensis strain CW1T prokMSA_id:78674 Staphylococcus sp. 9:4 isolate 9:4 1538BP 2.30.7.12.1.3638 OTU 1 seq prokMSA_id:14824 Staphylococcus sp. str. AG-30 2.30.7.12.1.3654 OTU 1 seq prokMSA_id:26685 Staphylococcus sp. B3117 2.30.7.12.1.3684 OTU 35 seqs prokMSA_id:14764 Staphylococcus chromogenes str. 1462 MAFF 911474 prokMSA_id:14767 Staphylococcus lentus str. K21 MAFF 911385 prokMSA_id:14768 Staphylococcus simulans str. MK 148 MAFF 910161 prokMSA_id:14779 Staphylococcus piscifermentans ATCC 51136 prokMSA_id:14782 Staphylococcus piscifermentans str. PU-87. Y15753 prokMSA_id:14790 Staphylococcus #2 from Psoroptes ovis prokMSA_id:14806 Staphylococcus schleiferi subsp. coagulans str. GA211 ATCC 4 prokMSA_id:14807 Staphylococcus schleiferi str. CD22-1 prokMSA_id:14830 Staphylococcus carnosus subsp. carnosus ATCC 51365 prokMSA_id:14834 Staphylococcus muscae str. MB4 CCM 4175 prokMSA_id:14843 Staphylococcus schleiferi subsp. schleiferi DSM 4807 prokMSA_id:14844 Staphylococcus vitulinus str. DD 756 ATCC 51145 prokMSA_id:14872 Staphylococcus delphini str. Heidy ATCC 49171 prokMSA_id:14879 Staphylococcus pulvereri ATCC 51698 prokMSA_id:14880 Staphylococcus sciuri ATCC 20345 prokMSA_id:14881 unnamed organism prokMSA_id:14892 Staphylococcus intermedius str. H11 MAFF 911388 prokMSA_id:14894 Staphylococcus condimenti str. F-2 DSM 11674 prokMSA_id:14895 Staphylococcus piscifermentans NRIC 1818 prokMSA_id:14897 Staphylococcus lutrae prokMSA_id:14898 Staphylococcus felis str. GD521 ATCC 49168 prokMSA_id:14899 Staphylococcus felis str. FD21-2 prokMSA_id:14900 Staphylococcus schleiferi subsp. schleiferi DSM 4807 prokMSA_id:34155 Staphylococcus sciuri subsp. sciuri strain DSM 20345T prokMSA_id:64575 Staphylococcus sp. clone Tminor30 prokMSA_id:64577 Staphylococcus sp. clone Tminor17 prokMSA_id:64578 Staphylococcus sp. clone Tminor25 prokMSA_id:64579 Staphylococcus sp. clone Tminor27 prokMSA_id:64580 Staphylococcus sp. clone Tminor19 prokMSA_id:64581 Staphylococcus sp. clone Tminor24 prokMSA_id:70830 soil clone 240-1 prokMSA_id:74274 Staphylococcus sp prokMSA_id:77128 Swine manure RT-22 prokMSA_id:91092 Staphylococcus sciuri strain:T131 AB116135 prokMSA_id:97108 Staphylococcus lentus AY395014 2.30.7.12.1.3770 OTU 1 seq prokMSA_id:14903 Spirochaeta sp. str. HIS Oman N26 2.30.7.12.1.3794 OTU 6 seqs prokMSA_id:14783 Staphylococcus epidermidis ATCC 14990 prokMSA_id:14795 Staphylococcus epidermidis ATCC 14990 prokMSA_id:21287 clone p-888-a5 prokMSA_id:42583 Staphylococcus epidermidis strain KL-004 prokMSA_id:77410 Staphylococcus epidermidis ATCC 12228 section 8 of 9 of the prokMSA_id:77465 Staphylococcus epidermidis strain SAFN-039 2.30.7.12.1.3822 OTU 7 seqs prokMSA_id:14808 Staphylococcus succinus str. AMG-D1 ATCC 700337 prokMSA_id:14809 Staphylococcus succinus str. AMG-D2 prokMSA_id:21472 Staphylococcus succinus strain SB72 prokMSA_id:64553 Staphylococcus sp. clone bottae10 prokMSA_id:64555 Staphylococcus sp. clone 87-7 prokMSA_id:64560 Staphylococcus sp. clone bottae5 prokMSA_id:64568 Staphylococcus sp. clone Ggeomydis17 2.30.7.12.2 MAC.CASEOLYTICUS_SUBGROUP 13 seqs 2.30.7.12.2.3494 OTU 3 seqs prokMSA_id:14905 Macrococcus caseolyticus str. DD 4508 ATCC 13548 prokMSA_id:14910 Macrococcus caseolyticus str. DD 4508 MAFF 911387 prokMSA_id:61797 Micrococcus luteus 2.30.7.12.2.3602 OTU 1 seq prokMSA_id:65687 soil clone C065 2.30.7.12.2.3771 OTU 1 seq prokMSA_id:14906 clone K20-12 2.30.7.12.2.3772 OTU 1 seq prokMSA_id:14907 clone CLEAR-31 2.30.7.12.2.3865 OTU 7 seqs prokMSA_id:14908 Macrococcus bovicus str. L2F4 prokMSA_id:14911 Macrococcus equipercicus str. H8h3 prokMSA_id:14912 Macrococcus carouselicus str. H8b16 prokMSA_id:55999 Macrococcus brunensis complete prokMSA_id:64393 Macrococcus lamae complete prokMSA_id:64394 Macrococcus unicus complete prokMSA_id:89445 Macrococcus equipercicus clone 30Y AJ576067 2.30.7.12.3 GEM.HAEMOLYSANS_SUBGROUP 21 seqs 2.30.7.12.3.3292 OTU 2 seqs prokMSA_id:14913 Salinicoccus roseus DSM 5351 prokMSA_id:31771 Salinicoccus roseus 2.30.7.12.3.3432 OTU 1 seq prokMSA_id:80961 Marine P_wp0225 2.30.7.12.3.3486 OTU 1 seq prokMSA_id:26423 Salinicoccus hispanicus 2.30.7.12.3.3524 OTU 7 seqs prokMSA_id:14914 Gemella morbillorum ATCC 27824 prokMSA_id:14916 Gemella 933-88 str. 933-88 prokMSA_id:14918 Gemella haemolysans ATCC 10379 prokMSA_id:14922 Gemella sanguinis str. 2045-94 CCUG 37820 prokMSA_id:14923 Gemella haemolysans ATCC 10379 . M58799 prokMSA_id:50458 Gemella sp. oral strain C24KA prokMSA_id:76927 Gemella haemolysans clone S15A-MN66 2.30.7.12.3.3613 OTU 1 seq prokMSA_id:37750 Hailaer soda lake T8 2.30.7.12.3.3648 OTU 1 seq prokMSA_id:45265 Gemella sp. M60449/99/1 T 2.30.7.12.3.3673 OTU 3 seqs prokMSA_id:28012 Jeotgalibacillus psychrophilus prokMSA_id:36078 clone GL178.18 prokMSA_id:44574 Jeotgalibacillus halotolerans 2.30.7.12.3.3724 OTU 3 seqs prokMSA_id:14915 Gemella 1754-94 str. 1754-94 prokMSA_id:14920 Gemella 617-93 str. 617-93 prokMSA_id:52225 Gemella sp. oral strain A31SC 2.30.7.12.3.3804 OTU 1 seq prokMSA_id:14917 str. 70.i 2.30.7.12.3.3807 OTU 1 seq prokMSA_id:14919 clone EKHO-4 2.30.7.12.4 B.CEREUS_SUBGROUP 271 seqs 2.30.7.12.4.3262 OTU 267 seqs prokMSA_id:14925 Bacillus anthracis str. Sterne. X55059 prokMSA_id:14926 Bacillus cereus str. F4810/72 NCTC 11143. X55063 prokMSA_id:14927 Bacillus cereus NCDO 1771 . X55060 prokMSA_id:14928 Bacillus cereus IAM 12605 . D16266 prokMSA_id:14929 Bacillus cereus str. WSBC10030. Z84575 prokMSA_id:14930 Bacillus cereus str. WSBC10037 prokMSA_id:14931 Bacillus cereus str. WSBC10201 prokMSA_id:14932 Bacillus cereus str. WSBC10204 prokMSA_id:14933 Bacillus cereus str. WSBC10206. Z84579 prokMSA_id:14934 Bacillus cereus str. WSBC10210 prokMSA_id:14935 Bacillus cereus ATCC 27877 prokMSA_id:14936 Bacillus cereus str. WSBC10030 prokMSA_id:14937 Bacillus thuringiensis str. WS2623 prokMSA_id:14938 Bacillus mycoides str. MWS5303-1-4. Z84582 prokMSA_id:14939 Bacillus mycoides str. MWS5303-2-51 prokMSA_id:14940 Bacillus thuringiensis str. WS 261. Z84584 prokMSA_id:14941 Bacillus thuringiensis str. WS 2617. Z84585 prokMSA_id:14942 Bacillus thuringiensis str. WS 2618. Z84586 prokMSA_id:14943 Bacillus thuringiensis str. WS 2625 prokMSA_id:14944 Bacillus thuringiensis str. WS 2626 prokMSA_id:14945 Bacillus cereus str. WSBC10030 prokMSA_id:14946 Bacillus mycoides str. MWS5303-1-4 prokMSA_id:14947 Bacillus thuringiensis str. WS 2614 prokMSA_id:14948 Bacillus thuringiensis str. WS 2617 prokMSA_id:14949 Bacillus mycoides str. DRC1 prokMSA_id:14950 str. sp6 prokMSA_id:14951 Bacillus pseudomycoides. AF013121 prokMSA_id:14952 Bacillus sp. str. JJ#1 prokMSA_id:14955 Bacillus cereus. AF076031 prokMSA_id:14956 str. HTA484 prokMSA_id:14957 Bacillus BSID723 str. BSID723 prokMSA_id:16497 Bacillus sp. AH 678 AF290561 prokMSA_id:17205 Bacillus sp. YSS/2001-3 prokMSA_id:18433 Bacillus mycoides AB021192 prokMSA_id:19663 Bacillus cereus strain ATCC11778 AF290546 prokMSA_id:20169 Bacillus anthracis strain W-21 AF390088 prokMSA_id:20900 Bacillus sp. AH 628 AF290558 prokMSA_id:22695 Bacillus sp. AH 526 AF290562 prokMSA_id:24287 Bacillus cereus strain ATCC31293 AF290548 prokMSA_id:24784 Bacillus sp. CMB03 prokMSA_id:25241 Bacillus cereus strain AH 521 AF290554 prokMSA_id:25668 Bacillus cereus prokMSA_id:25780 Bacillus sp. 82344 AF227848 prokMSA_id:25802 Bacillus anthracis AF176321 prokMSA_id:25927 Earthworm burrow B36D1 AY039397 prokMSA_id:26368 Bacillus weihenstephanensis AB021199 prokMSA_id:26371 Bacillus anthracis strain Delta Ames AF155951 prokMSA_id:28455 Bacillus sp. F26 AF385082 prokMSA_id:28561 Bacillus cereus strain S-5 prokMSA_id:28652 Bacillus anthracis strain Ames AF155950 prokMSA_id:30444 Low G+C Gram-positive D-Su1-21B prokMSA_id:30826 Bacillus cereus isolate Ki 2l prokMSA_id:31673 Bacillus cereus AF176322 prokMSA_id:34617 Bacillus cereus AF274244 prokMSA_id:35163 Bacillus mycoides strain 10206 AF155957 prokMSA_id:35362 Bacillus anthracis AY043083 prokMSA_id:35737 Bacillus sp. P16 AY048782 prokMSA_id:35857 Bacillus thuringiensis strain 4042 AF155953 prokMSA_id:36427 CCAJG117 prokMSA_id:37153 Bacillus cereus strain ATCC14579 AF290547 prokMSA_id:38172 Earthworm cast C19D1 AY039403 prokMSA_id:38433 Bacillus sp. LMG 20247 strain LMG 20247 AJ316312 prokMSA_id:38821 Marine SIMO-IS120 AF460884 prokMSA_id:39453 Bacillus mycoides prokMSA_id:39601 Bacillus sp. AH 665 AF290560 prokMSA_id:40803 Bacillus thuringiensis strain DM55 AF393658 prokMSA_id:44252 Bacillus sp. AH 648 AF290559 prokMSA_id:45153 Bacillus sp. KPU 0013 prokMSA_id:45462 earthworm cast clone C027 AY037682 prokMSA_id:46656 Bacillus thuringiensis strain B8 AF155955 prokMSA_id:47699 Bacillus cereus strain 9620 AF155952 prokMSA_id:52128 Bacillus mycoides strain 6462 AF155956 prokMSA_id:54066 Marine SE98 AY038926 prokMSA_id:55839 Glacial ice SB12K-9-4 prokMSA_id:56041 Bacillus cereus prokMSA_id:56330 Bacillus sp. Lgg10.14 strain Lgg10.14 AJ489353 prokMSA_id:58975 Bacillus cereus strain 2000031503 AY138277 prokMSA_id:58976 Bacillus cereus strain 2000031513 prokMSA_id:58977 Bacillus cereus strain G3317 AY138278 prokMSA_id:58978 Bacillus cereus strain 2000031498 AY138274 prokMSA_id:58979 Bacillus cereus strain LRN AY138275 prokMSA_id:58980 Bacillus cereus strain 2000031491 AY138276 prokMSA_id:59283 Bacillus cereus isolate MBRG 4.21 AJ508706 prokMSA_id:60008 Bacillus cereus strain AL1 AY129651 prokMSA_id:60367 Bacillaceae PH27B AF513473 prokMSA_id:60443 Bacillus sp. Fa25 AY131220 prokMSA_id:62451 Bacillus sp. FP1/2002 prokMSA_id:63007 Bacillus cereus strain 83-5c rrn AF526899 prokMSA_id:63455 Bacillus cereus SH 01 prokMSA_id:64004 Bacillus mycoides strain B10 AJ491827 prokMSA_id:64703 Bacillus sp. Lgg20.7 strain Lgg20.7 AJ489378 prokMSA_id:64712 Bacillus sp. Lgg15.5 strain Lgg15.5 AJ489361 prokMSA_id:64713 Bacillus sp. Lgg15.8 strain Lgg15.8 AJ489364 prokMSA_id:64714 Bacillus sp. Lgg15.4 strain Lgg15.4 AJ489360 prokMSA_id:64727 Bacillus sp. Lgg10.6 strain Lgg10.6 AJ489347 prokMSA_id:64730 Bacillus sp. Lgg5.10 strain Lgg5.10 AJ489340 prokMSA_id:66482 clone cvf70075 prokMSA_id:66554 clone cvf65109 prokMSA_id:67204 Bacillus sp. BacB11 AF497257 prokMSA_id:67209 Bacillus sp. BacB3 AF497249 prokMSA_id:67642 Bacillus sp. R-12866 AJ438304 prokMSA_id:67643 Bacillus sp. R-10947 AJ438300 prokMSA_id:68744 Glacial ice G50-TS3 AF479356 prokMSA_id:68769 Glacial ice G500K-2 AF479333 prokMSA_id:69776 Bacillus anthracis strain 2000031244 AY138354 prokMSA_id:69812 Bacillus anthracis strain 2002017150 AY138305 prokMSA_id:69819 Bacillus anthracis strain 2000032761 AY138322 prokMSA_id:69823 Bacillus anthracis strain AMES AY138358 prokMSA_id:69869 Bacillus anthracis strain 2002017085 AY138309 prokMSA_id:69870 Bacillus anthracis strain 2002007458 AY138328 prokMSA_id:69875 Bacillus anthracis strain 2000032600 AY138293 prokMSA_id:69902 Bacillus anthracis strain 2002007642 AY138315 prokMSA_id:69904 Bacillus anthracis strain 2000031657 AY138382 prokMSA_id:69928 Bacillus anthracis strain 2000031664 AY138383 prokMSA_id:69949 Bacillus anthracis strain 2000032601 AY138292 prokMSA_id:69963 Bacillus anthracis strain 2002007711 AY138302 prokMSA_id:70008 Bacillus cereus strain H1439 prokMSA_id:70014 Bacillus anthracis strain 2002008815 AY138335 prokMSA_id:70084 Bacillus anthracis strain 2000031648 AY138296 prokMSA_id:70107 Bacillus cereus strain 2000031486 AY138272 prokMSA_id:70161 Bacillus cereus strain G9667 AY138273 prokMSA_id:70251 Bacillus anthracis strain 2000031652 AY138374 prokMSA_id:70252 Bacillus anthracis strain 2002007648 AY138341 prokMSA_id:70303 Bacillus anthracis strain 2000032763 AY138320 prokMSA_id:70317 Bacillus cereus strain ATCC43881 prokMSA_id:70320 Bacillus anthracis strain 2000031661 AY138369 prokMSA_id:70515 Bacillus anthracis strain 2002008803 AY138339 prokMSA_id:70527 Bacillus thuringiensis strain 2002017401 AY138284 prokMSA_id:70554 Bacillus anthracis strain 2000031649 AY138295 prokMSA_id:70588 Bacillus anthracis strain 2001039387 AY138360 prokMSA_id:70620 Bacillus thuringiensis strain 2000031482 AY138290 prokMSA_id:70693 Bacillus anthracis strain 2000031666 AY138352 prokMSA_id:70696 Bacillus thuringiensis strain 2000031494 AY138288 prokMSA_id:70698 Bacillus anthracis strain 2002007712 AY138301 prokMSA_id:70757 Bacillus anthracis strain 2002007619 AY138318 prokMSA_id:70758 Bacillus anthracis strain 2000031368 AY138350 prokMSA_id:70771 Bacillus anthracis strain 2002008802 AY138330 prokMSA_id:70778 Bacillus thuringiensis strain ATCC33679 prokMSA_id:70858 Bacillus anthracis strain 2002017157 AY138303 prokMSA_id:70886 Bacillus anthracis strain 2000032642 AY138365 prokMSA_id:70914 Bacillus anthracis strain 2000031659 AY138377 prokMSA_id:70973 Bacillus anthracis strain 2001039360 AY138361 prokMSA_id:71007 Bacillus anthracis strain 2000032710 AY138334 prokMSA_id:71141 Bacillus anthracis strain 2002017149 AY138306 prokMSA_id:71142 Bacillus anthracis strain 2000031662 AY138368 prokMSA_id:71161 Bacillus anthracis strain 2001039361 AY138362 prokMSA_id:71181 Bacillus anthracis strain 2000032708 AY138331 prokMSA_id:71325 Bacillus anthracis strain 2001039382 AY138359 prokMSA_id:71441 Bacillus anthracis strain 2000031667 AY138380 prokMSA_id:71443 Bacillus thuringiensis strain 2000031496 AY138287 prokMSA_id:71452 Bacillus anthracis strain 2000032760 AY138323 prokMSA_id:71460 Bacillus anthracis strain 2000031668 AY138299 prokMSA_id:71523 Bacillus anthracis strain 2002019185 AY138314 prokMSA_id:71582 Bacillus anthracis strain 2002008812 AY138329 prokMSA_id:71620 Bacillus anthracis strain 2000031136 AY138349 prokMSA_id:71730 Bacillus anthracis strain 2000031653 AY138373 prokMSA_id:71772 Bacillus anthracis strain 2002008813 AY138336 prokMSA_id:71839 Bacillus anthracis strain 2000032764 AY138319 prokMSA_id:71893 Bacillus anthracis strain 2000031259 AY138346 prokMSA_id:71914 Bacillus anthracis strain 2002007549 AY138343 prokMSA_id:71922 Bacillus anthracis strain 2000032762 AY138321 prokMSA_id:72016 Bacillus anthracis strain 200003b1887B AY138347 prokMSA_id:72035 Bacillus anthracis strain 2000032706 AY138338 prokMSA_id:72116 Bacillus anthracis strain 2000031665 AY138366 prokMSA_id:72121 Bacillus anthracis strain 2000031887 AY138348 prokMSA_id:72196 Bacillus thuringiensis strain 2000031509 AY138285 prokMSA_id:72243 Bacillus anthracis strain 2002007574 AY138363 prokMSA_id:72247 Bacillus anthracis strain 2002007459 AY138327 prokMSA_id:72254 Bacillus anthracis strain 2002017153 AY138304 prokMSA_id:72260 Bacillus anthracis strain 2002017084 AY138310 prokMSA_id:72365 Bacillus anthracis strain Vollum AF290553 prokMSA_id:72368 Bacillus anthracis strain 2000031670 AY138367 prokMSA_id:72393 Bacillus thuringiensis strain 2000032757 AY138280 prokMSA_id:72441 Bacillus anthracis strain 2000031650 AY138379 prokMSA_id:72470 Bacillus anthracis strain 2002019002 AY138312 prokMSA_id:72526 Bacillus anthracis strain 2002007649 AY138357 prokMSA_id:72615 Bacillus thuringiensis strain 2000032755 AY138282 prokMSA_id:72680 Bacillus thuringiensis strain 2000031485 AY138289 prokMSA_id:72712 Bacillus anthracis strain 2000031076 AY138353 prokMSA_id:72756 Bacillus anthracis strain 2002008805 AY138337 prokMSA_id:72810 Bacillus thuringiensis strain 2000031508 AY138286 prokMSA_id:72920 Bacillus anthracis strain 2002007620 AY138317 prokMSA_id:72972 Bacillus anthracis strain 2002007488 AY138342 prokMSA_id:73036 Bacillus anthracis strain 2000031075 AY138345 prokMSA_id:73059 Bacillus thuringiensis strain 2002007400 AY138283 prokMSA_id:73089 Bacillus anthracis strain 2002019187 AY138313 prokMSA_id:73102 Bacillus anthracis strain 2000031671 AY138370 prokMSA_id:73113 Bacillus anthracis strain 2002019003 AY138308 prokMSA_id:73214 Bacillus anthracis strain 2000031658 AY138297 prokMSA_id:73336 Bacillus anthracis strain 2002017091 AY138311 prokMSA_id:73337 Bacillus anthracis strain 2000032711 AY138333 prokMSA_id:73434 Bacillus anthracis strain 2000031656 AY138375 prokMSA_id:73444 Bacillus anthracis strain 2000031651 AY138372 prokMSA_id:73565 Bacillus thuringiensis strain 2000032756 AY138281 prokMSA_id:73585 Bacillus anthracis strain 2002705969 AY138364 prokMSA_id:73697 Bacillus anthracis strain 2000031078 AY138351 prokMSA_id:73705 Bacillus anthracis strain 2002007621 AY138316 prokMSA_id:73765 Bacillus anthracis strain 2002007015 AY138340 prokMSA_id:73784 Bacillus anthracis strain 2000031663 AY138381 prokMSA_id:73801 Bacillus anthracis strain 2000031669 AY138298 prokMSA_id:73889 Bacillus anthracis strain 2002007582 AY138324 prokMSA_id:73992 Bacillus anthracis strain 2000031666 AY138371 prokMSA_id:74004 Bacillus anthracis strain 2001039370 AY138291 prokMSA_id:74018 Bacillus anthracis strain 2000031660 AY138378 prokMSA_id:74030 Bacillus anthracis strain 2002007460 AY138326 prokMSA_id:74064 Bacillus anthracis strain Sterne prokMSA_id:74110 Bacillus anthracis strain 2000032707 AY138332 prokMSA_id:74123 Bacillus anthracis strain 2000031782 AY138294 prokMSA_id:74146 Bacillus anthracis strain 2002017090 AY138307 prokMSA_id:74200 Bacillus anthracis strain 2002007650 AY138356 prokMSA_id:74273 Bacillus anthracis strain 2000031655 AY138376 prokMSA_id:74303 Bacillus anthracis strain 2002007651 AY138355 prokMSA_id:74309 Bacillus anthracis strain 2000031654 AY138300 prokMSA_id:74324 Bacillus anthracis strain 2002007547 AY138344 prokMSA_id:74425 Bacillus anthracis strain 2002007581 AY138325 prokMSA_id:75154 Bacillus mycoides strain MH48 AJ318901 prokMSA_id:77351 Bacillus thuringiensis AY170457 prokMSA_id:77357 Bacillus thuringiensis strain SAFN-003 prokMSA_id:77415 Bacillus megaterium strain SAFN-017 prokMSA_id:77709 Bacillus sp. 98TH11323 AY159882 prokMSA_id:78536 Bacillus sp. DW137 isolate DW137 AJ534864 prokMSA_id:78682 Bacillus cereus strain HJ20 prokMSA_id:78746 Bacillus cereus isolate 1 583BP AJ536418 prokMSA_id:78840 Bacillus thuringiensis prokMSA_id:79142 Bacillus cereus strain A78 prokMSA_id:79578 clone AY13 prokMSA_id:79609 Bacillus sp. B-1 AY189746 prokMSA_id:82523 Bacillus cereus ATCC 14579 section 16 of 18 of the complete prokMSA_id:82718 Bacillus cereus ATCC 14579 complete genome NC_004722 prokMSA_id:83539 Bacillus sp. UST020129-022 prokMSA_id:83594 Bacillus sp. MSB2054 AY275495 prokMSA_id:84080 Bacillus cereus ATCC 14579 section 1 of 18 of the complete g prokMSA_id:84334 Bacillus sp. CJ11076 prokMSA_id:85155 Bacillus cereus ATCC 14579 section 3 of 18 of the complete g prokMSA_id:85177 Bacillus anthracis str. Ames section 1 of 18 of the complete prokMSA_id:85366 Bacillus anthracis str. Ames complete genome NC_003997 prokMSA_id:86054 Bacillus sp. MSB2029 AY275494 prokMSA_id:86137 Bacillus anthracis str. Ames section 2 of 18 of the complete prokMSA_id:86482 Bacillus anthracis str. Ames section 3 of 18 of the complete prokMSA_id:86676 Bacillus cereus ATCC 14579 section 2 of 18 of the complete g prokMSA_id:86702 Bacillus anthracis str. Ames section 16 of 18 of the complet prokMSA_id:88453 Bacillus cereus strain RIVM BC00067 AJ577282 prokMSA_id:88521 Bacillus cereus strain J-1 AY305275 prokMSA_id:88623 Bacillus cereus strain B 412 AJ577281 prokMSA_id:88674 Bacillus cereus strain OH 599 AJ577286 prokMSA_id:88986 Bacillus cereus strain B 102 AJ577289 prokMSA_id:89137 Bacillus cereus strain F 3371/93 AJ577287 prokMSA_id:89200 Bacillus cereus strain B 319 AJ577285 prokMSA_id:89224 Bacillus cereus strain B 308 AJ577275 prokMSA_id:89369 Bacillus cereus strain ATCC 4342 AJ577288 prokMSA_id:89749 Bacillus cereus strain B 203 AJ577277 prokMSA_id:89896 Bacillus cereus strain ATCC 10987 AJ577290 prokMSA_id:89913 Bacillus cereus strain NS 58 AJ577274 prokMSA_id:90071 Bacillus cereus strain LKT 1/1 AJ577278 prokMSA_id:90341 Bacillus cereus strain LKT 1/2 AJ577284 prokMSA_id:90400 Bacillus cereus strain RIVM BC00068 AJ577283 prokMSA_id:90438 Bacillus cereus strain B 204 AJ577292 prokMSA_id:90565 Bacillus cereus strain F 528/94 AJ577291 prokMSA_id:90579 Bacillus anthracis strain NC08234-02 AJ578036 prokMSA_id:90668 Bacillus cereus strain F 5881/94 AJ577276 prokMSA_id:91393 H18 AY345553 prokMSA_id:91655 Bacillus anthracis strain:S51 AB116124 prokMSA_id:91694 K2-46 AY345416 prokMSA_id:91863 clone W4B-B03 AY345491 prokMSA_id:94646 Bacillus mycoides strain c2 AY373357 prokMSA_id:95498 Bacillus strain LMG 20364 AJ413201 prokMSA_id:96762 Bacillus sp. B913-2 AB114266 2.30.7.12.4.3378 OTU 1 seq prokMSA_id:31586 Low G+C Gram-positive D-Su1-25 2.30.7.12.4.3406 OTU 1 seq prokMSA_id:40011 Bacillus thuringiensis isolate B73 2.30.7.12.4.3467 OTU 1 seq prokMSA_id:70144 Bacillus luciferensis strain LMG 18422 2.30.7.12.4.3655 OTU 1 seq prokMSA_id:39946 Bacillus sp. FO-011 2.30.7.13 B.SPHAERICUS_GROUP 147 seqs 2.30.7.13.1 B.SPHAERICUS_SUBGROUP 68 seqs 2.30.7.13.1.3527 OTU 1 seq prokMSA_id:14988 Bacillus sphaericus str. BCA16 2.30.7.13.1.3583 OTU 38 seqs prokMSA_id:14984 Bacillus sphaericus str. IAM 13420 prokMSA_id:14985 Bacillus fusiformis prokMSA_id:18543 Bacillus sp. NRS-111 prokMSA_id:20955 Bacillus sp. B-4297 prokMSA_id:21252 Bacillus sp. NRS-1692 prokMSA_id:21894 Bacillus sp. B-183 prokMSA_id:22582 Bacillus sphaericus strain DSM 28 prokMSA_id:22934 Bacillus sp. NRS-719 prokMSA_id:23206 Bacillus sp. NRS-800 prokMSA_id:23764 Bacillus sp. BD-89 prokMSA_id:25415 Bacillus sp. B-23269 prokMSA_id:26107 Bacillus sp. NRS-810 prokMSA_id:29002 Bacillus sp. BD-121 prokMSA_id:30216 Bacillus sp. B-14957 prokMSA_id:31069 Bacillus sphaericus prokMSA_id:31358 Bacillus sp. B-14905 prokMSA_id:33671 Bacillus sp. BD-115 prokMSA_id:33727 Bacillus sp. NRS-967 prokMSA_id:36977 Bacillus sp. NRS-593 prokMSA_id:38572 Bacillus sp. BD-117 prokMSA_id:39763 Bacillus sp. NRS-752 prokMSA_id:39794 Bacillus sp. BD-109 prokMSA_id:41978 Bacillus sp. BD-95 prokMSA_id:42176 Bacillus sp. BD-94 prokMSA_id:44025 Bacillus sp. PAR5 prokMSA_id:44036 Bacillus sp. ZYM complete prokMSA_id:47340 Bacillus sp. B-23287 prokMSA_id:48387 Bacillus sp. BD-119 prokMSA_id:50391 Bacillus sp. B-23280 prokMSA_id:52279 Bacillus sp. BD-93 prokMSA_id:62950 Bacillus sp. 34hs1 rrn prokMSA_id:67860 Bacillus sp. clone DGG30 prokMSA_id:70175 Caryophanon sp. oral clone AV085 prokMSA_id:71751 Bacillus sphaericus AF227842 prokMSA_id:72583 Bacillus sphaericus strain DSM 396 NTCC 9602 prokMSA_id:74854 Bacillus sp. BD-83 prokMSA_id:78227 Bacillus sp. TUT1008 prokMSA_id:85427 Bacillus sp. FRA000042 2.30.7.13.1.3626 OTU 7 seqs prokMSA_id:14976 Bacillus fusiformis ATCC 7055 prokMSA_id:14977 Bacillus sphaericus NRS 592 prokMSA_id:14978 Bacillus sphaericus str. 2362 prokMSA_id:14979 Bacillus sphaericus NRS 400 prokMSA_id:14980 Bacillus sphaericus NRS 1198 prokMSA_id:14981 Bacillus sphaericus str. 2297 prokMSA_id:14982 Bacillus sphaericus str. 1013 T. Gibson ATCC 14577 2.30.7.13.1.3843 OTU 5 seqs prokMSA_id:19002 Bacillus sp. NRS-1186 prokMSA_id:19225 Bacillus sp. NRS-250 prokMSA_id:23256 Bacillus sp. B-1876 prokMSA_id:34645 Bacillus sphaericus strain 205y prokMSA_id:36376 Bacillus sp. BD-113 2.30.7.13.1.3860 OTU 17 seqs prokMSA_id:16731 Bacillus sp. NRS-156 prokMSA_id:19282 Bacillus sp. NRS-400 prokMSA_id:19710 Bacillus sp. B-23286 prokMSA_id:20757 Bacillus sp. B-23279 prokMSA_id:25196 Bacillus sp. B-23288 prokMSA_id:31780 Bacillus sp. NRS-732 prokMSA_id:32927 Bacillus sp. B-23284 prokMSA_id:34462 Bacillus sp. B-23282 prokMSA_id:35652 Bacillus sp. B-14865 prokMSA_id:39362 Bacillus sp. NRS-1223 prokMSA_id:39772 Bacillus fusiformis strain DSM 2898T prokMSA_id:41414 Bacillus sp. BD-111 prokMSA_id:42508 Bacillus sp. NRS-866 prokMSA_id:43479 Bacillus sp. NRS-718 prokMSA_id:47760 Bacillus sp. B-23285 prokMSA_id:49078 Bacillus fusiformis prokMSA_id:70299 Bacillus sphaericus strain B3 2.30.7.13.2 CRP.LATUM_SUBGROUP 13 seqs 2.30.7.13.2.3285 OTU 1 seq prokMSA_id:64192 Caryophanon latum strain DSM 14151T 2.30.7.13.2.3304 OTU 2 seqs prokMSA_id:14990 Bacillus silvestris str. HR3-23 prokMSA_id:71479 Caryophanon sp. oral clone AW086 2.30.7.13.2.3489 OTU 5 seqs prokMSA_id:55578 Bacillus sp. CPB 9 AF548880 prokMSA_id:77308 Bacillus silvestris strain SAFN-010 prokMSA_id:77326 Sporosarcina aquimarina strain SAFN-008 prokMSA_id:79018 Brevibacillus sp. PLC-3 AY161043 prokMSA_id:93730 Bacillus sp. KSM-9865 AB084263 2.30.7.13.2.3658 OTU 3 seqs prokMSA_id:14993 Caryophanon tenue NCDO 2324 prokMSA_id:14994 Caryophanon latum NCIMB 9533 prokMSA_id:64190 Caryophanon tenue strain DSM 14152T 2.30.7.13.2.3784 OTU 1 seq prokMSA_id:73669 soil clone 889-1 2.30.7.13.2.3817 OTU 1 seq prokMSA_id:14991 Caryophanon latum NCDO 2034 2.30.7.13.3 KUR.ZOPFII_SUBGROUP 7 seqs 2.30.7.13.3.3416 OTU 5 seqs prokMSA_id:16706 Bacillus sp. NRS-1694 AF169534 prokMSA_id:22505 Bacillus sp. NRS-1693 AF169533 prokMSA_id:35115 Bacillus sp. BD-85 prokMSA_id:39697 Bacillus sp. NRS-1691 AF169531 prokMSA_id:45761 Bacillus sp. NRS-1695 AF169535 2.30.7.13.3.3482 OTU 1 seq prokMSA_id:60381 Bacillaceae LA38BB 2.30.7.13.3.3778 OTU 1 seq prokMSA_id:14997 Kurthia zopfii str. F64/100; K5 NCIMB 9878 2.30.7.13.4 B.THERMOSPHAERICUS_SUBGROUP 1 seq 2.30.7.13.4.3737 OTU 1 seq prokMSA_id:15000 clone BURTON-37 2.30.7.13.5 B.INSOLITUS_SUBGROUP 1 seq 2.30.7.13.5.3739 OTU 1 seq prokMSA_id:15002 str. B775 2.30.7.13.6 B.PSYCHROPHILUS_SUBGROUP 23 seqs 2.30.7.13.6.3333 OTU 1 seq prokMSA_id:17599 Sporosarcina ureae 2.30.7.13.6.3334 OTU 1 seq prokMSA_id:15010 DA057 2.30.7.13.6.3372 OTU 1 seq prokMSA_id:25505 Bacillus hs2_43 2.30.7.13.6.3514 OTU 1 seq prokMSA_id:66290 Sporosarcina sp. LCSAOTU9 2.30.7.13.6.3529 OTU 1 seq prokMSA_id:47004 Bacillus aquamarinus 2.30.7.13.6.3687 OTU 1 seq prokMSA_id:77347 Filibacter limicola strain SAFN-012 2.30.7.13.6.3707 OTU 12 seqs prokMSA_id:15008 Bacillus globisporus str. W25 DSM 4 prokMSA_id:15012 Bacillus psychrophilus str. W16A ATCC 23304 prokMSA_id:15013 Bacillus psychrophilus str. W5 ATCC 23306. X54969 prokMSA_id:15014 Bacillus psychrophilus str. 82346 prokMSA_id:15015 Bacillus psychrophilus str. W16A IAM 12468 prokMSA_id:33293 Bacillus sp. ikaite c21 isolate ikaite21 prokMSA_id:39603 Bacillus sp. ikaite c1 isolate ikaite c1 prokMSA_id:43631 AF010009 prokMSA_id:45316 Bacillus sp. ikaite c5 isolate ikaite c5 prokMSA_id:48206 Bacillus sp. S4 AF260711 prokMSA_id:51589 Filibacter limicola strain DSM 13886T prokMSA_id:86093 low G+C Gram-positive AY217505 2.30.7.13.6.3704 OTU 1 seq prokMSA_id:57750 Bacillus sp. CPB 7 2.30.7.13.6.3761 OTU 1 seq prokMSA_id:15009 DA114 2.30.7.13.6.3894 OTU 3 seqs prokMSA_id:55403 Sporosarcina macmurdoensis strain CMS 21w prokMSA_id:78989 Sporosarcina sp. 2216.15.2 prokMSA_id:94088 firmicute clone Gitt-GS-134 AJ582201 2.30.7.13.7 PLC.MCMEEKINII_SUBGROUP 34 seqs 2.30.7.13.7.3306 OTU 2 seqs prokMSA_id:70975 Planococcaceae GP-13 prokMSA_id:73238 Planococcaceae GP-14 2.30.7.13.7.3347 OTU 1 seq prokMSA_id:31248 Planococcus citreus 2.30.7.13.7.3356 OTU 1 seq prokMSA_id:15021 Planococcus alkanoclasticus str. MAE2 NCIMB 13489 2.30.7.13.7.3359 OTU 1 seq prokMSA_id:15024 Planococcus kocurii NCIMB 629 2.30.7.13.7.3383 OTU 1 seq prokMSA_id:66784 Bacillus sp. PE12 2.30.7.13.7.3455 OTU 2 seqs prokMSA_id:17754 Bacillus sp. isolate P53-6 prokMSA_id:85408 Bacillus sp. 433-D9 2.30.7.13.7.3517 OTU 18 seqs prokMSA_id:15017 Planococcus okeanokoites prokMSA_id:15019 Planococcus mcmeekinii str. S23F2 ATCC 700539 prokMSA_id:15025 Planococcus citreus NCIMB 1493 prokMSA_id:16646 Planococcus southpolaris strain CMS 3or prokMSA_id:29551 Planococcus southpolaris strain CMS 26or prokMSA_id:33254 Planococcus sp. 'SOS Orange' prokMSA_id:37775 Planococcus southpolaris strain CMS 84or prokMSA_id:45093 Planococcus psychrophilus strain CMS 53or prokMSA_id:52488 Planococcus sp. JG07 prokMSA_id:63194 Planococcus sp. p16X prokMSA_id:66682 Planococcus citreus strain TF-16 prokMSA_id:66683 Planococcus maritimus strain TF-9 AF500007 prokMSA_id:68743 Glacial ice G50-TS4 prokMSA_id:73281 Planococcus citreus prokMSA_id:74784 Planococcus psychrotoleratus prokMSA_id:77011 Clostridium sp. clone Sh765B-AG-2 prokMSA_id:82798 Antarctic R-8161 strain R-8161 prokMSA_id:91001 Planococcus rifitiensis strain M8 AJ493659 2.30.7.13.7.3542 OTU 4 seqs prokMSA_id:15018 Renibacterium salmoninarum prokMSA_id:22739 Bacillus psychrodurans strain DSM 11713 prokMSA_id:23863 Bacillus psychrotolerans strain DSM 11706 prokMSA_id:36118 Arsenic resistant soil 7-04 2.30.7.13.7.3594 OTU 1 seq prokMSA_id:81178 Planococcus maitrii strain S1 2.30.7.13.7.3733 OTU 1 seq prokMSA_id:35322 Bacillus sp. strain NIBH P3M5 complete 2.30.7.13.7.3760 OTU 1 seq prokMSA_id:18100 Bacillus sp. KL-024 2.30.7.13.7.3783 OTU 1 seq prokMSA_id:48809 Blackwater bioreactor BW21 2.30.7.14 B.THERMOCLOACAE 7 seqs 2.30.7.14.3695 OTU 2 seqs prokMSA_id:15026 Bacillus thermocloacae DSM 5250 prokMSA_id:67361 Bacillus sp. MSP06G 2.30.7.14.3866 OTU 4 seqs prokMSA_id:20396 Gram-positive MOL361 complete prokMSA_id:27545 clone p-2330-s962-2 prokMSA_id:29728 clone p-66-a5 prokMSA_id:45887 clone p-79-a5 AF371534 2.30.7.14.3898 OTU 1 seq prokMSA_id:27234 compost 4-28 2.30.7.15 LISTERIA-BROCHOTHRIX_GROUP 31 seqs 2.30.7.15.1 LIS.MONOCYTOGENES_SUBGROUP 31 seqs 2.30.7.15.1.3319 OTU 1 seq prokMSA_id:16370 isolate MB405 2.30.7.15.1.3364 OTU 4 seqs prokMSA_id:15034 Listeria grayi ATCC 19120 . X98526 prokMSA_id:15041 Listeria grayi CIP 6818. X56150 prokMSA_id:69153 Listeria grayi strain CECT 942 prokMSA_id:72152 Listeria grayi strain CECT 931T AJ515520 2.30.7.15.1.3662 OTU 2 seqs prokMSA_id:17260 clone S37-11 AJ308388 prokMSA_id:41555 clone S24-10 2.30.7.15.1.3701 OTU 24 seqs prokMSA_id:15030 Listeria ivanovii subsp. londoniensis CLIP 12229 prokMSA_id:15032 Listeria innocua prokMSA_id:15036 Listeria monocytogenes ATCC 35152. M58822 prokMSA_id:15037 Listeria ivanovii subsp. ivanovii str. SLCC 2379 CLIP 12510 prokMSA_id:15039 Listeria innocua str. SLCC 3379 ATCC 33090 prokMSA_id:15040 Listeria seeligeri ATCC 35976 prokMSA_id:15042 Listeria monocytogenes prokMSA_id:15044 Listeria monocytogenes str. DD 6821. U84150 prokMSA_id:15045 Listeria monocytogenes str. LL195 prokMSA_id:15046 Listeria welshimeri str. Welshimer V8 ATCC 35897 prokMSA_id:46413 Listeria innocua Clip11262 complete genome segment 10/12 AL5 prokMSA_id:49371 Listeria monocytogenes strain EGD complete genome segment 11 prokMSA_id:50304 Listeria monocytogenes strain EGD complete genome NC_003210 prokMSA_id:53366 Listeria innocua Clip11262 complete genome NC_003212 prokMSA_id:53770 Listeria monocytogenes strain EGD complete genome segment 9/ prokMSA_id:54496 Listeria innocua Clip11262 complete genome segment 8/12 AL59 prokMSA_id:59299 Listeria monocytogenes strain CECT 4032 AJ508749 prokMSA_id:59488 Listeria seeligeri AJ416946 prokMSA_id:59524 Listeria seeligeri strain CECT 941 AJ416945 prokMSA_id:69445 Listeria monocytogenes strain CECT 935 AJ515515 prokMSA_id:69491 Listeria monocytogenes strain CECT 932 AJ515513 prokMSA_id:69663 Listeria welshimeri strain CECT 919T AJ515519 prokMSA_id:70623 Listeria monocytogenes strain CECT 4031T AJ515512 prokMSA_id:74622 Listeria seeligeri strain CECT 917T AJ515518 2.30.7.16 ABIOTROPHIA_GROUP 52 seqs 2.30.7.16.3297 OTU 11 seqs prokMSA_id:15071 Aerococcus urinae str. G1-84 prokMSA_id:15072 Aerococcus urinae str. 1656-92 prokMSA_id:15073 Aerococcus urinae str. 944-94 prokMSA_id:15074 Aerococcus urinae str. 998-93 prokMSA_id:95500 Aerococcus urinae isolate CCUG 32514 AY422716 prokMSA_id:96251 Aerococcus urinae isolate CDC 151585 AY422712 prokMSA_id:96543 Aerococcus urinae isolate NL 95028 AY422713 prokMSA_id:96593 Aerococcus urinae isolate DK E2T AY422717 prokMSA_id:97674 Aerococcus urinae isolate NL 95012 AY422714 prokMSA_id:98017 Aerococcus urinae isolate NL 95031 AY422711 prokMSA_id:98780 Aerococcus urinae isolate CDC 335295 AY422715 2.30.7.16.3386 OTU 1 seq prokMSA_id:34802 feedlot manure B87 2.30.7.16.3425 OTU 1 seq prokMSA_id:15050 Facklamia hominis 2.30.7.16.3423 OTU 1 seq prokMSA_id:48237 B16S 2.30.7.16.3431 OTU 1 seq prokMSA_id:15053 Facklamia languida str. 1144-97 2.30.7.16.3466 OTU 1 seq prokMSA_id:15060 Ignavigranum ruoffiae str. 1607-97 CCUG 37658 2.30.7.16.3470 OTU 1 seq prokMSA_id:15061 Facklamia sourekii 2.30.7.16.3471 OTU 1 seq prokMSA_id:15062 Facklamia CCUG30090 CCUG 30090 2.30.7.16.3522 OTU 7 seqs prokMSA_id:15066 Aerococcus viridans ATCC 11563 . M58797 prokMSA_id:15067 Aerococcus LV65.5:W1 str. LV65.5:W1 prokMSA_id:15068 Pediococcus urinaeequi IFO 12173 prokMSA_id:26672 Aerococcus viridans strain dtb226 AJ309980 prokMSA_id:39287 Swine manure pit PPC6 AF445246 prokMSA_id:55490 Aerococcus viridans AF548625 prokMSA_id:82321 Aerococcus sp. clone ckl5 2.30.7.16.3519 OTU 4 seqs prokMSA_id:15054 Abiotrophia elegans str. B1333 DSM 11693 . AF016390 prokMSA_id:15055 Abiotrophia sp. str. 2640-91 prokMSA_id:15056 Abiotrophia sp. str. 4067-96 prokMSA_id:15057 Abiotrophia elegans str. HHC5 2.30.7.16.3528 OTU 1 seq prokMSA_id:48276 Streptococcus sp. isolate 2992-95 2.30.7.16.3575 OTU 2 seqs prokMSA_id:35088 Aerococcus rochesterensis prokMSA_id:37545 Aerococcus sp. CCUG43001 2.30.7.16.3572 OTU 3 seqs prokMSA_id:15051 Facklamia 164-92 str. 164-92 prokMSA_id:15052 Facklamia 1440-97 str. 1440-97 prokMSA_id:52354 Facklamia ignava Y15716 2.30.7.16.3615 OTU 1 seq prokMSA_id:23513 Aerococcus urinaehominis strain CCUG 42038b 2.30.7.16.3631 OTU 2 seqs prokMSA_id:15063 Abiotrophia defectiva str. SC10 ATCC 49176 prokMSA_id:84770 Abiotrophia sp. oral clone P4PA_155 P1 2.30.7.16.3717 OTU 1 seq prokMSA_id:15070 Aerococcus urinae str. F1-84 2.30.7.16.3719 OTU 1 seq prokMSA_id:15076 Aerococcus CCUG28826 CCUG 28826 2.30.7.16.3782 OTU 1 seq prokMSA_id:71345 feedlot manure B7 2.30.7.16.3799 OTU 1 seq prokMSA_id:16600 Aerosphaera taetra strain CCUG 43036T 2.30.7.16.3851 OTU 1 seq prokMSA_id:74511 Facklamia sp. strain M1832/95/2 2.30.7.16.3858 OTU 1 seq prokMSA_id:42227 Facklamia sp. CCUG 42728 2.30.7.16.3870 OTU 8 seqs prokMSA_id:15058 Abiotrophia adiacens str. TKT1 prokMSA_id:15065 Abiotrophia adiacens str. GaD ATCC 49175 prokMSA_id:20183 oral RP55-1 AB028411 prokMSA_id:26395 oral RP55-44 AB028441 prokMSA_id:34191 oral RP55-12 AB028421 prokMSA_id:54764 oral RP55-11 AB028420 prokMSA_id:70105 Granulicatella adiacens strain 10/833 prokMSA_id:70746 Granulicatella adiacens strain WG160 AJ312377 2.30.7.17 LACTOBACILLI 385 seqs 2.30.7.17.1 WEI.VIRIDESCENS_SUBGROUP 11 seqs 2.30.7.17.1.3286 OTU 4 seqs prokMSA_id:15087 Weissella viridescens str. S38A ATCC 12706 prokMSA_id:15094 Weissella minor ATCC 35412 . M23039 prokMSA_id:30631 Weissella minor strain:NRIC 1625 prokMSA_id:33970 Weissella viridescens strain NRIC 1536 2.30.7.17.1.3293 OTU 2 seqs prokMSA_id:15093 Weissella kandleri DSM 20593 . M23038 prokMSA_id:43687 Weissella kandleri strain:NRIC 1628 2.30.7.17.1.3485 OTU 1 seq prokMSA_id:48808 Weissella hanii 2.30.7.17.1.3497 OTU 2 seqs prokMSA_id:63449 Weissella koreensis isolate S-5673 prokMSA_id:63450 Weissella koreensis isolate S-5623 2.30.7.17.1.3801 OTU 1 seq prokMSA_id:73154 Weissella soli complete 2.30.7.17.1.3850 OTU 1 seq prokMSA_id:45087 Weissella halotolerans strain:NRIC 1627 2.30.7.17.2 LC.MESENTEROIDES_SUBGROUP 44 seqs 2.30.7.17.2.3311 OTU 33 seqs prokMSA_id:15100 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 . M prokMSA_id:15102 Leuconostoc gelidum DSM 5578 prokMSA_id:15103 Leuconostoc mesenteroides subsp. mesenteroides NCFB 523 prokMSA_id:15104 Leuconostoc mesenteroides subsp. mesenteroides NRIC 1541 prokMSA_id:15105 Leuconostoc gelidum JCM 10093 prokMSA_id:15106 Leuconostoc mesenteroides subsp. mesenteroides NCDO 523 . X9 prokMSA_id:15107 Leuconostoc mesenteroides subsp. cremoris ATCC 19254 . M2303 prokMSA_id:15110 Leuconostoc citreum str. ; ATCC 49370 prokMSA_id:15111 Leuconostoc citreum str. IH22 KCTC 0542BP. AF111949 prokMSA_id:15112 Leuconostoc citreum str. 22R CNRZ 1478 prokMSA_id:15116 Leuconostoc lactis JCM 6123 prokMSA_id:15117 Leuconostoc argentinum DSM 8581 prokMSA_id:24274 Leuconostoc gasicomitatum strain LMG 18811 prokMSA_id:24435 Leuconostoc pseudomesenteroides strain NRIC 1777 prokMSA_id:24935 Leuconostoc gelidum strain:NRIC 1778 AB022921 prokMSA_id:28880 Leuconostoc gasicomitatum strain LMG 18812 prokMSA_id:32872 Leuconostoc kimchii AF173986 prokMSA_id:33805 Leuconostoc mesenteroides strain NRIC 1539 AB023246 prokMSA_id:33861 Leuconostoc mesenteroides strain NRIC 1538 AB023245 prokMSA_id:41680 Leuconostoc pseudomesenteroides prokMSA_id:44146 Leuconostoc citreum strain:NRIC 1776 prokMSA_id:45789 Leuconostoc mesenteroides strain NCFB 543 AB023247 prokMSA_id:50225 Leuconostoc mesenteroides strain NCFB 529 AB023244 prokMSA_id:64385 Leuconostoc pseudomesenteroides strain RO1 complete AF515228 prokMSA_id:64684 Leuconostoc inhae strain IH611 prokMSA_id:64685 Leuconostoc inhae strain IH515 prokMSA_id:64686 Leuconostoc inhae strain IH101 prokMSA_id:65411 Leuconostoc inhae prokMSA_id:67685 Leuconostoc fructosus prokMSA_id:67809 Leuconostoc sp. CR-310S clone crev-3 prokMSA_id:75964 Leuconostoc citreum prokMSA_id:84812 Leuconostoc mesenteroides strain KNUC03 prokMSA_id:98624 clone LB1C2 AY186084 2.30.7.17.2.3512 OTU 7 seqs prokMSA_id:20679 Oenococcus oeni strain:95 St.CS-5-1 prokMSA_id:20790 Oenococcus oeni strain:JCM 6125 prokMSA_id:24042 Oenococcus oeni strain:95 ASH-5-C-1 prokMSA_id:32963 Oenococcus oeni strain:95 MBA-6-A-1 prokMSA_id:43771 Oenococcus oeni strain:94 CS-3-4 prokMSA_id:43827 Oenococcus oeni strain:95 St.Mer-2-4 prokMSA_id:44642 Oenococcus oeni strain:95 St.Mer-8-1 AB054808 2.30.7.17.2.3573 OTU 1 seq prokMSA_id:67688 Leuconostoc ficulneus 2.30.7.17.2.3601 OTU 3 seqs prokMSA_id:16498 Leuconostoc fallax prokMSA_id:52511 Leuconostoc fallax strain NRIC 0210 prokMSA_id:67686 Leuconostoc fallax 2.30.7.17.3 L.DELBRUECKII_SUBGROUP 75 seqs 2.30.7.17.3.3275 OTU 1 seq prokMSA_id:21782 Lactobacillus hamsteri strain DSM 5661T 2.30.7.17.3.3302 OTU 4 seqs prokMSA_id:15130 Lactobacillus ASF360 str. ASF 360 prokMSA_id:31066 clone L10-37 prokMSA_id:47413 Lactobacillus intestinalis strain DSM 6629T AJ306299 prokMSA_id:98005 clone rc1-227 complete AY239420 2.30.7.17.3.3330 OTU 5 seqs prokMSA_id:36681 clone p-2500-18B5 prokMSA_id:39660 clone p-2488-18B5 prokMSA_id:45134 clone p-2501-18B5 prokMSA_id:84781 Lactobacillus acidophilus prokMSA_id:85653 Lactobacillus sp. KM9212 2.30.7.17.3.3336 OTU 1 seq prokMSA_id:22491 clone p-2716-65A5 2.30.7.17.3.3342 OTU 7 seqs prokMSA_id:15127 Lactobacillus crispatus DSM 20584 prokMSA_id:16988 Lactobacillus crispatus strain ATCC33820 prokMSA_id:24380 Lactobacillus crispatus strain TL25a prokMSA_id:26975 Lactobacillus crispatus strain KC12a prokMSA_id:33386 Lactobacillus crispatus strain TL23a prokMSA_id:45385 Lactobacillus crispatus strain KC35b prokMSA_id:49002 Lactobacillus crispatus strain KLB79 2.30.7.17.3.3459 OTU 1 seq prokMSA_id:18716 clone p-4729-2Wb2 2.30.7.17.3.3478 OTU 5 seqs prokMSA_id:18690 Lactobacillus crispatus strain TL39b prokMSA_id:21096 Lactobacillus crispatus strain ATCC33197 prokMSA_id:40830 Lactobacillus crispatus strain TL13 prokMSA_id:42454 Lactobacillus crispatus strain TL35 prokMSA_id:49001 Lactobacillus crispatus strain KC12b 2.30.7.17.3.3490 OTU 10 seqs prokMSA_id:41700 Lactobacillus crispatus strain BLB2 prokMSA_id:47365 Lactobacillus sp. KC38 AF243160 prokMSA_id:47438 Lactobacillus sp. Y10 prokMSA_id:48213 clone p-3443-SwA2 prokMSA_id:61751 Lactobacillus gallinarum and internal transcribed spacer 1 I prokMSA_id:77358 Lactobacillus sp. KC38 AF215872 prokMSA_id:82427 Lactobacillus sp. clone ck6 AY080968 prokMSA_id:84798 Lactobacillus ultunense complete prokMSA_id:89142 Lactobacillus crispatus clone FX32-3 AY335494 prokMSA_id:92041 Lactobacillus sp. oral clone HT070 AY349383 2.30.7.17.3.3596 OTU 1 seq prokMSA_id:15125 Lactobacillus amylolyticus str. LA 5 DSM 11664 2.30.7.17.3.3600 OTU 1 seq prokMSA_id:15129 Lactobacillus crispatus NCTC 4 2.30.7.17.3.3599 OTU 1 seq prokMSA_id:15128 Lactobacillus gallinarum ATCC 33199 2.30.7.17.3.3604 OTU 15 seqs prokMSA_id:15132 Lactobacillus acidophilus subsp. johnsonii str. BMF 6Lb6 LAB prokMSA_id:15135 Lactobacillus johnsonii ATCC 33200 prokMSA_id:16314 Lactobacillus gasseri strain BLB1b prokMSA_id:16504 Lactobacillus gasseri strain KC5a prokMSA_id:17132 clone p-136-a2 prokMSA_id:18662 clone p-2315-962-2 prokMSA_id:22892 Lactobacillus gasseri strain KC36a prokMSA_id:28241 clone p-2865-6C5 prokMSA_id:35597 Lactobacillus gasseri strain BLB3 prokMSA_id:39384 Lactobacillus gasseri strain TL33a prokMSA_id:48509 Lactobacillus gasseri strain KC29 prokMSA_id:50521 Lactobacillus gasseri strain KC26 prokMSA_id:66613 Lactobacillus sp. IDSAc prokMSA_id:70466 clone p-13-a5 prokMSA_id:74642 Lactobacillus gasseri strain ATCC 33323 complete 2.30.7.17.3.3611 OTU 1 seq prokMSA_id:15133 Lactobacillus sp. CCUG 28746 2.30.7.17.3.3618 OTU 8 seqs prokMSA_id:18763 Lactobacillus jensenii strain KC44 prokMSA_id:27140 Lactobacillus jensenii strain KC39 prokMSA_id:31979 Lactobacillus jensenii strain BLB1a prokMSA_id:35518 Lactobacillus jensenii strain KC36b prokMSA_id:38470 Lactobacillus jensenii strain ATCC25258 AF243176 prokMSA_id:47914 Lactobacillus jensenii strain KC23 prokMSA_id:51715 Lactobacillus jensenii strain KC13 prokMSA_id:77350 Lactobacillus jensenii 2.30.7.17.3.3678 OTU 1 seq prokMSA_id:22336 Lactobacillus sp. TV1018 2.30.7.17.3.3696 OTU 1 seq prokMSA_id:84126 Lactobacillus gastricus complete 2.30.7.17.3.3809 OTU 12 seqs prokMSA_id:15119 Lactobacillus delbrueckii subsp. bulgaricus str. Lb.14 JCM 1 prokMSA_id:15120 Lactobacillus delbrueckii subsp. delbrueckii str. Calvert AT prokMSA_id:15124 Lactobacillus delbrueckii subsp. lactis ATCC 12315 prokMSA_id:19801 clone p-2370-55G5 prokMSA_id:24230 Lactobacillus delbrueckii subsp. delbrueckii prokMSA_id:55673 clone 54CR complete prokMSA_id:67815 clone 45CR prokMSA_id:67818 clone 51CR complete prokMSA_id:67822 clone 37CR complete prokMSA_id:70954 Lactobacillus delbrueckii subsp. bulgaricus prokMSA_id:73747 Lactobacillus delbrueckii subsp. lactis prokMSA_id:95745 Lactobacillus delbrueckii subsp. indicus strain NCC725 AY421 2.30.7.17.4 L.REUTERI_SUBGROUP 47 seqs 2.30.7.17.4.3353 OTU 1 seq prokMSA_id:40960 Lactobacillus fermentum 2.30.7.17.4.3381 OTU 1 seq prokMSA_id:49917 clone p-4312-4Wa3 2.30.7.17.4.3395 OTU 4 seqs prokMSA_id:15143 Lactobacillus reuteri str. F275 DSM 20016 prokMSA_id:15144 Lactobacillus reuteri str. F275 DSM 20016 prokMSA_id:28515 clone S25-5 AJ308392 prokMSA_id:36454 clone p-165-a2 2.30.7.17.4.3547 OTU 5 seqs prokMSA_id:16684 Lactobacillus vaginalis strain KC19 prokMSA_id:21772 Lactobacillus vaginalis strain ATCC49540 prokMSA_id:35658 Lactobacillus sp. TMW 1.666 strain TMW 1.666 prokMSA_id:35920 clone p-2694-65A5 prokMSA_id:49202 clone p-3301-23G2 2.30.7.17.4.3566 OTU 8 seqs prokMSA_id:15142 Lactobacillus pontis str. LTH 2587 prokMSA_id:15148 Lactobacillus panis DSM 6035 prokMSA_id:15150 Lactobacillus oris DSM 4864 prokMSA_id:22238 clone p-3979-6Wa2 prokMSA_id:49835 clone p-3083-SwA-3 prokMSA_id:76876 Lactobacillus pontis strain LMG 14187 T prokMSA_id:77216 Lactobacillus pontis strain LMG 14188 prokMSA_id:85511 Lactobacillus kalixi complete 2.30.7.17.4.3652 OTU 6 seqs prokMSA_id:40447 Lactobacillus sp. G43 prokMSA_id:40831 Lactobacillus sp. G44 prokMSA_id:44614 Lactobacillus sp. G35 prokMSA_id:52162 Lactobacillus sp. KR3 complete prokMSA_id:52562 Lactobacillus sp. G22 complete prokMSA_id:72717 Lactobacillus sp. G12 complete 2.30.7.17.4.3759 OTU 1 seq prokMSA_id:16292 clone S24-8 2.30.7.17.4.3798 OTU 13 seqs prokMSA_id:15139 Lactobacillus fermentum ATCC 14931 . M58819 prokMSA_id:15140 Lactobacillus fermentum str. KRM. U62624 prokMSA_id:21805 Lactobacillus fermentum strain F53 AF243149 prokMSA_id:41377 Lactobacillus fermentum strain KC5b prokMSA_id:44080 Lactobacillus fermentum strain PL9006 complete AF477499 prokMSA_id:52471 Lactobacillus fermentum complete AF302116 prokMSA_id:67806 Lactobacillus sp. CR-6AS clone crev-7 AF349935 prokMSA_id:67816 clone 60CR complete AF349926 prokMSA_id:71186 Lactobacillus fermentum strain KLB12 complete AF522394 prokMSA_id:88448 Lactobacillus cellobiosus specimen voucher CECT 562 AJ575812 prokMSA_id:91530 Lactobacillus sp. rennanqilyf4 AY332396 prokMSA_id:95034 Lactobacillus fermentum MD-9 AY373589 prokMSA_id:96956 Lactobacillus fermentum AJ508720 2.30.7.17.4.3834 OTU 7 seqs prokMSA_id:15141 Lactobacillus G24 str. G24 prokMSA_id:15146 Lactobacillus mucosae str. S32 prokMSA_id:18857 Lactobacillus mucosae strain BLB1c prokMSA_id:41977 rumen 3C3d-12 prokMSA_id:47403 Lactobacillus mucosae strain F52 prokMSA_id:48564 clone p-1883-s962-3 prokMSA_id:77529 Lactobacillus sp. BLB1c AF215871 2.30.7.17.4.3887 OTU 1 seq prokMSA_id:23477 Lactobacillus colehominis 2.30.7.17.5 PED.PENTOSACEUS_SUBGROUP 18 seqs 2.30.7.17.5.3281 OTU 1 seq prokMSA_id:17309 clone p-2984-9F2 2.30.7.17.5.3521 OTU 4 seqs prokMSA_id:15153 Pediococcus parvulus str. S182 JCM 5889 prokMSA_id:19307 Pediococcus inopinatus strain DSM 20285 prokMSA_id:39325 Pediococcus damnosus strain DSM 20331 prokMSA_id:51901 clone p-2997-9F2 AF371489 2.30.7.17.5.3874 OTU 1 seq prokMSA_id:27815 Pediococcus acidilactici strain E 7 2.30.7.17.5.3885 OTU 12 seqs prokMSA_id:15151 Pediococcus pentosaceus ATCC 33316 prokMSA_id:15152 Pediococcus pentosaceus str. LS 5 prokMSA_id:15156 Pediococcus acidilactici str. LA 3 prokMSA_id:15157 Pediococcus acidilactici str. LA 35 prokMSA_id:38120 Pediococcus pentosaceus strain DSM 20336 prokMSA_id:40870 Pediococcus acidilactici strain B1104 prokMSA_id:44357 Pediococcus acidilactici strain DSM 20284 prokMSA_id:56137 Pediococcus pentosaceus strain RO95 complete prokMSA_id:56475 Pediococcus acidilactici strain RO17 complete prokMSA_id:66561 amplicon L2 prokMSA_id:66562 amplicon L1 prokMSA_id:67805 Pediococcus sp. CR-6S clone crev-10 2.30.7.17.6 L.PLANTARUM_SUBGROUP 74 seqs 2.30.7.17.6.3279 OTU 1 seq prokMSA_id:52430 clone p-2956-9F2 2.30.7.17.6.3475 OTU 2 seqs prokMSA_id:15164 Lactobacillus collinoides JCM 1123 prokMSA_id:38883 Lactobacillus sp. AB No.74 2.30.7.17.6.3510 OTU 1 seq prokMSA_id:26722 clone p-2960-9F2 2.30.7.17.6.3634 OTU 1 seq prokMSA_id:56512 Lactobacillus letivazi 23S and internal transcribed spacer 1 2.30.7.17.6.3767 OTU 2 seqs prokMSA_id:74107 Lactobacillus durianis strain LMG 19193 prokMSA_id:88564 Lactobacillus suebicus strain CECT 5917T AJ575744 2.30.7.17.6.3810 OTU 10 seqs prokMSA_id:15170 Lactobacillus brevis ATCC 14869 prokMSA_id:15171 Lactobacillus brevis NRIC 1684 prokMSA_id:15172 Lactobacillus brevis str. K9 prokMSA_id:15173 Lactobacillus brevis str. Lactobacillus brevis L63 prokMSA_id:16554 Lactobacillus brevis strain:B4101 AB070606 prokMSA_id:17965 Lactobacillus brevis strain:B5501 AB070611 prokMSA_id:40052 Lactobacillus brevis strain:B5401 AB070608 prokMSA_id:48588 Lactobacillus brevis strain:B5201 AB070607 prokMSA_id:64387 Lactobacillus brevis strain RO66 complete prokMSA_id:64389 Lactobacillus brevis strain RO97 complete 2.30.7.17.6.3808 OTU 49 seqs prokMSA_id:15159 Lactobacillus pentosus JCM 1588 prokMSA_id:15160 Lactobacillus sp. ATCC 10776. D79213 prokMSA_id:15161 Lactobacillus plantarum JCM 1149 prokMSA_id:15163 Lactobacillus plantarum str. 17-5 ATCC 8014 prokMSA_id:17624 Lactobacillus plantarum AF320256 prokMSA_id:19229 Lactobacillus plantarum AF323677 prokMSA_id:20723 Lactobacillus plantarum strain C5 AF382389 prokMSA_id:26342 Lactobacillus plantarum strain 0B8 AF382390 prokMSA_id:31888 Lactobacillus paraplantarum strain DSM 10667T prokMSA_id:33677 Lactobacillus plantarum clone Pz619 AF095564 prokMSA_id:46388 Lactobacillus B5407 AB070610 prokMSA_id:48381 clone p-3000-9F2 prokMSA_id:62378 Lactobacillus plantarum clone L71 AF404710 prokMSA_id:64381 Lactobacillus plantarum strain RO7 complete prokMSA_id:64526 Lactobacillus sp. MR-2 prokMSA_id:64527 Lactobacillus sp. MR-1 prokMSA_id:67804 Lactobacillus sp. CR-7AS clone crev-8 prokMSA_id:73661 Lactobacillus plantarum strain UK782 AJ271852 prokMSA_id:73879 Lactobacillus plantarum strain HSW36 prokMSA_id:79835 Lactobacillus plantarum strain WCFS1 complete genome; segmen prokMSA_id:80353 Lactobacillus plantarum WCFS1 complete genome NC_004567 prokMSA_id:80366 Lactobacillus plantarum strain WCFS1 complete genome; segmen prokMSA_id:80507 Lactobacillus plantarum strain WCFS1 complete genome; segmen prokMSA_id:80613 Lactobacillus plantarum strain WCFS1 complete genome; segmen prokMSA_id:80844 Lactobacillus plantarum strain WCFS1 complete genome; segmen prokMSA_id:83239 Lactobacillus plantarum strain H AY230220 prokMSA_id:83673 Lactobacillus plantarum strain BJ G26-1 AY244626 prokMSA_id:83774 Lactobacillus plantarum strain H8 AY230225 prokMSA_id:83806 Lactobacillus plantarum strain BJ G9-3 AY244634 prokMSA_id:84089 Lactobacillus plantarum complete prokMSA_id:84280 Lactobacillus plantarum strain K14 AY230227 prokMSA_id:84302 Lactobacillus plantarum strain BJ G29-1 AY244631 prokMSA_id:84560 Lactobacillus plantarum strain H19 AY230221 prokMSA_id:84583 Lactobacillus plantarum strain BJ G14-5 AY244637 prokMSA_id:84594 Lactobacillus plantarum strain BJ G26-4 AY244633 prokMSA_id:84617 Lactobacillus plantarum strain H4 AY230223 prokMSA_id:85070 Lactobacillus plantarum strain BJ G32-1 AY244627 prokMSA_id:85716 Lactobacillus plantarum strain BJ G31-1 AY244630 prokMSA_id:86180 Lactobacillus plantarum strain H5 AY230224 prokMSA_id:86228 Lactobacillus pentosus strain BJ G9-1 AY244638 prokMSA_id:88391 Lactobacillus plantarum AB112083 prokMSA_id:92163 Lactobacillus plantarum strain BJ4-1 AY341560 prokMSA_id:92227 Lactobacillus plantarum strain BJ6-2 AY341559 prokMSA_id:92312 Lactobacillus plantarum strain BJ20-1 AY341544 prokMSA_id:92364 Lactobacillus plantarum strain BJ32-1 AY341557 prokMSA_id:92442 Lactobacillus plantarum strain BJ31-1S AY341552 prokMSA_id:92674 Lactobacillus plantarum strain BJ16-28 AY341551 prokMSA_id:93128 Lactobacillus plantarum strain BJ26-2 AY341546 prokMSA_id:95489 Lactobacillus plantarum strain MiLAB14 AY383631 2.30.7.17.6.3813 OTU 1 seq prokMSA_id:24271 clone p-2626-9F5 2.30.7.17.6.3829 OTU 5 seqs prokMSA_id:24802 Lactobacillus kimchii prokMSA_id:70330 Lactobacillus paralimentarius strain DSM 13238 prokMSA_id:76191 Lactobacillus paralimentarius strain ACA-DC 3413 prokMSA_id:76249 Lactobacillus paralimentarius strain ACA-DC 3415 prokMSA_id:76371 Lactobacillus paralimentarius strain ACA-DC 3363 2.30.7.17.6.3912 OTU 1 seq prokMSA_id:38908 clone p-2945-9F2 2.30.7.17.6.3919 OTU 1 seq prokMSA_id:27265 clone p-2988-9F2 2.30.7.17.7 L.SANFRANCISCENSIS_SUBGROUP 20 seqs 2.30.7.17.7.3270 OTU 1 seq prokMSA_id:15190 Lactobacillus fructivorans DSM 20203 2.30.7.17.7.3278 OTU 8 seqs prokMSA_id:15178 Lactobacillus kefiri NRIC 1693 prokMSA_id:20664 Lactobacillus parabuchneri AY026751 prokMSA_id:26241 Lactobacillus sp. JKD6 complete prokMSA_id:30670 Lactobacillus parakefiri prokMSA_id:33139 Lactobacillus ferintoshensis prokMSA_id:38705 Lactobacillus sp. ACD7 AY026752 prokMSA_id:87788 Lactobacillus genomosp. C2 AY278620 prokMSA_id:93917 Lactobacillus kefiri AY363303 2.30.7.17.7.3534 OTU 1 seq prokMSA_id:44586 clone SM2F09 2.30.7.17.7.3663 OTU 4 seqs prokMSA_id:15191 Lactobacillus lindneri str. KPA DSM 20690 prokMSA_id:15192 Lactobacillus lindneri str. L2. X95422 prokMSA_id:15193 Lactobacillus lindneri str. LTH 2505. X95423 prokMSA_id:15194 Lactobacillus lindneri str. DA1 2.30.7.17.7.3880 OTU 2 seqs prokMSA_id:26176 Lactobacillus sp. clone KL-11-1-6 prokMSA_id:74576 Lactobacillus sp. clone KL-111-2-6 2.30.7.17.7.3890 OTU 3 seqs prokMSA_id:15176 Lactobacillus sanfranciscensis DSM 20663 prokMSA_id:15189 Lactobacillus sanfranciscensis str. Kline L-2 ATCC 27651 prokMSA_id:76839 Lactobacillus sanfranciscensis strain C57 2.30.7.17.7.3924 OTU 1 seq prokMSA_id:15179 Lactobacillus sp. str. YH-15 2.30.7.17.8 L.MALI_SUBGROUP 37 seqs 2.30.7.17.8.3363 OTU 6 seqs prokMSA_id:15200 Lactobacillus murinus str. ASF 361 prokMSA_id:22999 clone S25-9 prokMSA_id:24547 clone p-487-o2 prokMSA_id:80227 Lactobacillus murinus strain MP3 AY186045 prokMSA_id:90383 Lactobacillus murinus AY324630 prokMSA_id:97991 clone rc1-18 complete AY239418 2.30.7.17.8.3366 OTU 1 seq prokMSA_id:84709 Lactobacillus saerimmeri 2.30.7.17.8.3379 OTU 5 seqs prokMSA_id:15201 Lactobacillus ruminis str. RF1 ATCC 27780 . M58828 prokMSA_id:19363 rumen 4C3d-19 AB034089 prokMSA_id:26075 rumen 3C3d-2 AB034088 prokMSA_id:30219 clone p-3424-SwA2 prokMSA_id:48534 rumen 5C3d-14 2.30.7.17.8.3418 OTU 2 seqs prokMSA_id:15208 Lactobacillus aviarius prokMSA_id:15209 Lactobacillus aviarius 2.30.7.17.8.3479 OTU 1 seq prokMSA_id:74053 Lactobacillus equi 2.30.7.17.8.3493 OTU 1 seq prokMSA_id:15202 Lactobacillus C33LV5 str. C33LV5 2.30.7.17.8.3496 OTU 1 seq prokMSA_id:15206 Lactobacillus LMG17676 LMG 17676 2.30.7.17.8.3665 OTU 2 seqs prokMSA_id:15196 Lactobacillus sp prokMSA_id:38501 Lactobacillus sp. LuE10 Y17500 2.30.7.17.8.3703 OTU 14 seqs prokMSA_id:15205 Lactobacillus salivarius subsp. salivarius str. H066 ATCC 11 prokMSA_id:22623 Chicken intestinal MRS 4.5 AF201900 prokMSA_id:33452 Lactobacillus salivarius subsp. salivarius complete AF335475 prokMSA_id:35499 Lactobacillus salivarius prokMSA_id:48374 clone p-4323-4Wa3 prokMSA_id:62010 Lactobacillus salivarius subsp. salicinius strain JCM 1230 prokMSA_id:62011 Lactobacillus salivarius subsp. salicinius strain JCM 1046 prokMSA_id:62012 Lactobacillus salivarius subsp. salicinius strain JCM 1047 prokMSA_id:62013 Lactobacillus salivarius subsp. salicinius strain JCM 1044 A prokMSA_id:62014 Lactobacillus salivarius subsp. salicinius strain JCM 1042 A prokMSA_id:62015 Lactobacillus salivarius subsp. salicinius strain JCM 1045 A prokMSA_id:64741 Lactobacillus salivarius subsp. salivarius complete prokMSA_id:95759 Lactobacillus salivarius strain RA2115 AY389803 prokMSA_id:96905 Lactobacillus salivarius strain RA2116 AY389802 2.30.7.17.8.3740 OTU 1 seq prokMSA_id:50977 Lactobacillus sp. YE06 2.30.7.17.8.3795 OTU 1 seq prokMSA_id:23628 equine intestinal sp. MW20 clone MW20 2.30.7.17.8.3914 OTU 2 seqs prokMSA_id:18965 Lactobacillus sp. LMK3 strain LMK3 prokMSA_id:28727 Lactobacillus sp. 121B AF305930 2.30.7.17.9 L.CASEI_SUBGROUP 38 seqs 2.30.7.17.9.3452 OTU 1 seq prokMSA_id:46006 clone p-2923-9F2 2.30.7.17.9.3590 OTU 1 seq prokMSA_id:39949 Lactobacillus pantheri complete 2.30.7.17.9.3632 OTU 1 seq prokMSA_id:35081 clone p-2594-9F5 2.30.7.17.9.3660 OTU 1 seq prokMSA_id:15222 Lactobacillus LM-17 str. LM-17 2.30.7.17.9.3669 OTU 2 seqs prokMSA_id:15211 Lactobacillus manihotivorans str. OND 32 LMG 18010 prokMSA_id:15212 Lactobacillus manihotivorans str. YAM I LMG 18011 2.30.7.17.9.3821 OTU 32 seqs prokMSA_id:15213 Lactobacillus rhamnosus DSM 20021 . M58815 prokMSA_id:15214 Lactobacillus rhamnosus JCM 1136 prokMSA_id:15215 Lactobacillus casei subsp. casei JCM 1134 prokMSA_id:15216 Lactobacillus casei str. = JCM 8129 prokMSA_id:15218 Lactobacillus casei subsp. casei ATCC 393 prokMSA_id:15219 Lactobacillus zeae ATCC 15820 prokMSA_id:15220 Lactobacillus casei subsp. casei ATCC 334. NONE prokMSA_id:15221 Lactobacillus paracasei subsp. paracasei JCM 8130 prokMSA_id:15223 Lactobacillus paracasei subsp. paracasei JCM 1133 prokMSA_id:15224 Lactobacillus paracasei subsp. paracasei JCM 1181 prokMSA_id:15225 Lactobacillus paracasei subsp. tolerans JCM 1171 prokMSA_id:19371 Lactobacillus B5406 prokMSA_id:20863 Lactobacillus paracasei subsp. paracasei strain F31 prokMSA_id:21135 Lactobacillus sp. P8 prokMSA_id:27334 Lactobacillus casei strain BL23 AF385770 prokMSA_id:33166 Lactobacillus casei subsp. casei strain UK 318 prokMSA_id:46704 Lactobacillus casei prokMSA_id:48136 Lactobacillus rhamnosus strain F11 prokMSA_id:48159 Lactobacillus casei AF320255 prokMSA_id:50029 Lactobacillus paracasei subsp. paracasei strain KLB58 prokMSA_id:56018 Lactobacillus sp. CR-609S clone crev-9 prokMSA_id:66614 Lactobacillus sp. IDLAc prokMSA_id:67359 Lactobacillus casei strain KH-1 prokMSA_id:77419 Lactobacillus sp. F11 prokMSA_id:77533 Lactobacillus casei prokMSA_id:79380 Lactobacillus casei strain ATCC 393 prokMSA_id:83495 Lactobacillus casei strain CWBI-B623 prokMSA_id:87604 Lactobacillus rhamnosus strain MCRF-412 AY299488 prokMSA_id:87656 Lactobacillus rhamnosus strain MCRF-271 AY299486 prokMSA_id:87913 Lactobacillus casei strain MCRF-284 AY299487 prokMSA_id:93435 Lactobacillus paracasei subsp. paracasei isolate Akira1 ; -2 prokMSA_id:93837 Lactobacillus sp. rennanqilfy10 AY363376 2.30.7.17.10 L.BIFERMENTANS_SUBGROUP 3 seqs 2.30.7.17.10.3889 OTU 1 seq prokMSA_id:72207 Lactobacillus sp. YE10 2.30.7.17.10.3908 OTU 2 seqs prokMSA_id:72216 Lactobacillus sp. YE07 prokMSA_id:89972 Lactobacillus sp. CECT 5923 strain CECT 5923 AJ576008 2.30.7.17.11 L.PEROLENS_SUBGROUP 7 seqs 2.30.7.17.11.3513 OTU 1 seq prokMSA_id:15229 Pediococcus dextrinicus str. L95 JCM 5887 2.30.7.17.11.3523 OTU 1 seq prokMSA_id:15230 Lactobacillus LMG17710 LMG 17710 2.30.7.17.11.3593 OTU 1 seq prokMSA_id:36943 Lactobacillus algidus 2.30.7.17.11.3768 OTU 1 seq prokMSA_id:15232 Lactobacillus perolens str. L532 2.30.7.17.11.3842 OTU 3 seqs prokMSA_id:15233 Lactobacillus perolens str. L534 prokMSA_id:15234 Lactobacillus sp. str. LA-6 prokMSA_id:36168 Lactobacillus sp. AB No.434 E17066 2.30.7.17.12 L.SAKEISAK_SUBGROUP 11 seqs 2.30.7.17.12.3526 OTU 10 seqs prokMSA_id:15236 Lactobacillus casei subsp. fusiformis str. = JCM 1177 prokMSA_id:27633 Lactobacillus sakei operon and rrnB operon prokMSA_id:33531 clone GL184.23 AY038636 prokMSA_id:35674 clone GL182.39 AY038634 prokMSA_id:52229 clone GL178.12 AY038637 prokMSA_id:81067 Lactobacillus sakei strain HNMRS2c AY204895 prokMSA_id:81933 Lactobacillus curvatus subsp. melibiosus strain CCUG 34545 A prokMSA_id:81991 Lactobacillus sakei subsp. carnosus strain CCUG 31331 prokMSA_id:82221 Lactobacillus sakei subsp. sakei strain DSM 20017 AY204893 prokMSA_id:82312 Lactobacillus sakei strain HNSL5a 2.30.7.17.12.3587 OTU 1 seq prokMSA_id:49102 Lactobacillus fuchuensis 2.30.7.18 CARNOBACTERIUM_GROUP 57 seqs 2.30.7.18.1 AIC.OTITIS_SUBGROUP 5 seqs 2.30.7.18.1.3537 OTU 1 seq prokMSA_id:15237 Alloiococcus otitis NCFB 2890 2.30.7.18.1.3682 OTU 1 seq prokMSA_id:15241 Dolosigranulum pigrum str. R91/1468 NCFB 2975 2.30.7.18.1.3681 OTU 3 seqs prokMSA_id:15238 unnamed organism prokMSA_id:15239 unnamed organism. AF124034 prokMSA_id:15240 unnamed organism. AF124041 2.30.7.18.2 CRN.DIVERGENS_SUBGROUP 51 seqs 2.30.7.18.2.3303 OTU 1 seq prokMSA_id:48912 clone p-2073-s959-2 2.30.7.18.2.3317 OTU 2 seqs prokMSA_id:27852 feedlot manure A77 prokMSA_id:71668 feedlot manure B24 2.30.7.18.2.3326 OTU 1 seq prokMSA_id:29998 Nostocoida limicola I 2.30.7.18.2.3323 OTU 5 seqs prokMSA_id:15246 Lactosphaera pasteurii str. KoTa2 ATCC 35945 prokMSA_id:15254 Trichococcus flocculiformis DSM 2094 prokMSA_id:47450 Nostocoida limicola I strain Ben201 prokMSA_id:66187 clone IB-11 prokMSA_id:77290 Trichococcus sp. Coc4 strain Coc4 2.30.7.18.2.3358 OTU 1 seq prokMSA_id:24332 Carnobacterium sp. D4 2.30.7.18.2.3387 OTU 1 seq prokMSA_id:69980 Firmicutes sp. oral clone BX005 2.30.7.18.2.3410 OTU 1 seq prokMSA_id:37875 Hailaer soda lake F24 2.30.7.18.2.3435 OTU 3 seqs prokMSA_id:36593 Hailaer soda lake F1 prokMSA_id:47180 Hailaer soda lake F27 prokMSA_id:76550 clone ZB-Z25 2.30.7.18.2.3501 OTU 1 seq prokMSA_id:27088 sp. Lake Nakuru isolate WN16 2.30.7.18.2.3504 OTU 9 seqs prokMSA_id:55874 Marinolactobacillus psychrotolerans strain:M13-7 AB083411 prokMSA_id:61165 Marinolactobacillus psychrotolerans strain:O21 AB083413 prokMSA_id:61166 Marinolactobacillus psychrotolerans strain:O1-1 AB083412 prokMSA_id:61167 Marinolactobacillus psychrotolerans strain:M13-6 AB083410 prokMSA_id:61168 Marinolactobacillus psychrotolerans strain:M13-5 AB083409 prokMSA_id:61171 Marinolactobacillus psychrotolerans strain:M13-3 AB083407 prokMSA_id:61172 Marinolactobacillus psychrotolerans strain:M13-4 AB083408 prokMSA_id:61173 Marinolactobacillus psychrotolerans strain:M13-2 AB083406 prokMSA_id:78803 Marinolactobacillus sp. MJYP.25.24 2.30.7.18.2.3536 OTU 1 seq prokMSA_id:55452 clone cvf56045 2.30.7.18.2.3553 OTU 1 seq prokMSA_id:15259 Desemzia incerta DSM 20581 2.30.7.18.2.3561 OTU 1 seq prokMSA_id:16452 Carnobacterium gallinarum strain DSM 4847 2.30.7.18.2.3683 OTU 1 seq prokMSA_id:15243 Carnobacterium funditum str. pf3 DSM 5970 2.30.7.18.2.3693 OTU 1 seq prokMSA_id:73819 feedlot manure B32 2.30.7.18.2.3792 OTU 1 seq prokMSA_id:22650 Carnobacterium sp. D35 2.30.7.18.2.3812 OTU 1 seq prokMSA_id:41252 clone RFLP 31E 2.30.7.18.2.3833 OTU 7 seqs prokMSA_id:15257 Carnobacterium alterfunditum ACAM 311 prokMSA_id:15258 Carnobacterium sp. str. K1 prokMSA_id:15260 Carnobacterium LV62:W1 str. LV62:W1 prokMSA_id:15261 Carnobacterium Y6 str. Y6 prokMSA_id:19355 Carnobacterium viridans prokMSA_id:36062 Carnobacterium piscicola prokMSA_id:44929 Carnobacterium sp. FTR-1 2.30.7.18.2.3840 OTU 5 seqs prokMSA_id:15250 Lactosphaera pasteurii str. KoTa2 DSM 2381 prokMSA_id:28044 Lactosphaera sp. PMagG1 prokMSA_id:34045 Ruminococcus palustris strain DSM 9172T prokMSA_id:47658 Trichococcus collinsii strain 37AN3 prokMSA_id:66180 clone IIA-2 2.30.7.18.2.3854 OTU 5 seqs prokMSA_id:15245 Carnobacterium St2 str. St2 prokMSA_id:53108 Carnobacterium mobile strain DSM 4848 strain AJ317963 prokMSA_id:56246 Carnobacterium mobile strain:DSM 4848 prokMSA_id:83763 rumen clone BS28 prokMSA_id:84009 Carnobacterium sp. strain R-7279 2.30.7.18.2.3902 OTU 2 seqs prokMSA_id:43119 Granulicatella sp. M658/99/3 prokMSA_id:43965 Atopobacter phocae strain m1590/94/2 2.30.7.18.3 DSZ.INCERTA_SUBGROUP 1 seq 2.30.7.18.3.3736 OTU 1 seq prokMSA_id:15266 Desemzia incerta DSM 20581 2.30.7.20 ENTEROCOCCUS_GROUP 110 seqs 2.30.7.20.3261 OTU 5 seqs prokMSA_id:15320 Enterococcus mundtii ATCC 43186 prokMSA_id:15326 Enterococcus mundtii NCFB 2375 prokMSA_id:44890 Enterococcus mundtii strain CECT972T prokMSA_id:62895 Enterococcus mundtii prokMSA_id:74813 Enterococcus mundtii strain LMG 10748 2.30.7.20.3288 OTU 1 seq prokMSA_id:76127 Swine manure RT-5D 2.30.7.20.3289 OTU 1 seq prokMSA_id:20210 Isobaculum melis isolate CCUG 37660T 2.30.7.20.3298 OTU 6 seqs prokMSA_id:15315 Enterococcus saccharolyticus ATCC 43076 prokMSA_id:15329 Enterococcus saccharolyticus NCDO 2594 prokMSA_id:43998 Enterococcus saccharolyticus strain LMG 11427 prokMSA_id:67810 Enterococcus sp. CR-303S clone crev-2 prokMSA_id:72178 Enterococcus villorum strain LMG 12287 prokMSA_id:74276 Enterococcus villorum 2.30.7.20.3318 OTU 4 seqs prokMSA_id:15302 Enterococcus sp. str. GvF410 prokMSA_id:57509 Enterococcus ratti prokMSA_id:60256 Enterococcus ratti prokMSA_id:73318 Enterococcus faecalis strain UK873 2.30.7.20.3346 OTU 1 seq prokMSA_id:37654 isopod gut clone RKPsBA 2.30.7.20.3382 OTU 16 seqs prokMSA_id:15273 Enterococcus faecalis str. JH2-2 prokMSA_id:15274 Enterococcus faecalis prokMSA_id:15275 Enterococcus faecalis prokMSA_id:26643 Enterococcus faecalis prokMSA_id:29590 Enterococcus faecalis complete AB036835 prokMSA_id:46861 Enterococcus faecalis strain CECT481T AJ420803 prokMSA_id:50297 Enterococcus faecalis strain P7812 prokMSA_id:58583 Enterococcus faecalis complete prokMSA_id:64383 Enterococcus faecalis strain RO90 complete prokMSA_id:76134 Enterococcus faecalis prokMSA_id:82596 Enterococcus faecalis V583 section 11 of 11 of the complete prokMSA_id:83107 Enterococcus faecalis V583 complete genome NC_004668 prokMSA_id:84808 Enterococcus faecalis V583 section 4 of 11 of the complete g prokMSA_id:85425 Enterococcus faecalis V583 section 1 of 11 of the complete g prokMSA_id:85640 Enterococcus faecalis V583 section 10 of 11 of the complete prokMSA_id:95956 Enterococcus faecalis AY395018 2.30.7.20.3392 OTU 1 seq prokMSA_id:15276 Vagococcus CCUG39187 str. m1134/97/1 CCUG 39187 2.30.7.20.3433 OTU 1 seq prokMSA_id:15292 Tetragenococcus muriaticus 2.30.7.20.3457 OTU 1 seq prokMSA_id:20438 clone:BCf6-17 2.30.7.20.3598 OTU 9 seqs prokMSA_id:15271 Tetragenococcus halophilus JCM 5888 prokMSA_id:15291 Tetragenococcus halophilus IAM 1676 prokMSA_id:15293 Enterococcus solitarius ATCC 49428 prokMSA_id:15294 Enterococcus solitarius NCIMB 12902 prokMSA_id:16995 Tetragenococcus halophilus strain:FSB101 prokMSA_id:20568 Enterococcus solitarius strain DSM 5634 prokMSA_id:20595 Tetragenococcus halophilus strain DSM 20339 prokMSA_id:36890 Tetragenococcus halophilus strain:FSB401 prokMSA_id:38324 Tetragenococcus halophilus strain:FSB201 2.30.7.20.3680 OTU 2 seqs prokMSA_id:15284 Melissococcus pluton str. M40P NCDO 2440 prokMSA_id:15336 Melissococcus pluton str. M43P NCDO 2443 2.30.7.20.3713 OTU 4 seqs prokMSA_id:15279 Enterococcus cecorum ATCC 43198 prokMSA_id:15280 Enterococcus cecorum NCDO 2674 prokMSA_id:48901 mpn-isolate group 14 prokMSA_id:93993 Enterococcus cecorum AY365054 2.30.7.20.3881 OTU 58 seqs prokMSA_id:15287 Enterococcus faecium str. GUCR prokMSA_id:15288 Enterococcus faecium str. 71380 prokMSA_id:15289 Enterococcus faecium prokMSA_id:15290 Enterococcus faecium NCFB 942 prokMSA_id:15307 Enterococcus gallinarum str. 42 prokMSA_id:15308 Enterococcus casseliflavus str. 32 prokMSA_id:15309 Enterococcus gallinarum prokMSA_id:15310 Enterococcus casseliflavus prokMSA_id:15311 Enterococcus hirae DSM 20160 prokMSA_id:15312 Enterococcus durans ATCC 59607 prokMSA_id:15313 Enterococcus pseudoavium ATCC 49372 prokMSA_id:15314 Enterococcus raffinosus str. Mayo Clinic laboratory strain prokMSA_id:15316 Enterococcus dispar ATCC 51266 prokMSA_id:15317 Enterococcus avium str. Mayo Clinic laboratory strain prokMSA_id:15319 Enterococcus malodoratus ATCC 43197 prokMSA_id:15321 Enterococcus gallinarum NCFB 2314 prokMSA_id:15323 Enterococcus flavescens NCIMB 13226 prokMSA_id:15324 Enterococcus raffinosus NCIMB 12901 prokMSA_id:15325 Enterococcus malodoratus NCFB 846 prokMSA_id:15328 Enterococcus pseudoavium NCFB 2138 prokMSA_id:15330 Enterococcus dispar NCIMB 13000 prokMSA_id:15331 Enterococcus durans NCFB 596 prokMSA_id:15332 Enterococcus avium NCFB 2369 prokMSA_id:16425 Enterococcus gallinarum prokMSA_id:17444 Enterococcus dispar strain LMG 13521 prokMSA_id:18966 mpn-isolate group 13 prokMSA_id:19924 Enterococcus gallinarum strain CECT970T prokMSA_id:20443 Enterococcus raffinosus strain LMG 12999 prokMSA_id:21403 Enterococcus azikeevi strain IB-A35 prokMSA_id:25976 Enterococcus faecium strain E 26 prokMSA_id:28797 Enterococcus flavescens strain LMG 13518 prokMSA_id:29774 sp. 1275b prokMSA_id:32550 clone p-1938-s962-3 prokMSA_id:35969 isopod gut clone RKPsAG prokMSA_id:37447 Enterococcus hirae strain LMG 6399 prokMSA_id:39621 Enterococcus faecium strain LMG 11423 prokMSA_id:40545 Enterococcus pseudoavium strain LMG 11426 prokMSA_id:42419 Enterococcus casseliflavus strain CECT969T prokMSA_id:43140 Enterococcus gallinarum strain LMG 13129 prokMSA_id:45325 Enterococcus avium strain LMG 10744 prokMSA_id:45428 Enterococcus hirae strain CECT279T prokMSA_id:45618 Enterococcus flavescens strain CECT4481T prokMSA_id:47702 Enterococcus durans strain DSM20633 prokMSA_id:47779 Enterococcus durans strain CECT411T prokMSA_id:48898 Enterococcus malodoratus strain LMG 10747 prokMSA_id:50018 Enterococcus faecium strain CECT410T prokMSA_id:50668 Enterococcus avium prokMSA_id:51948 clone p-2526-18B5 prokMSA_id:62987 Enterococcus sp. clone T8-20 rrn prokMSA_id:67869 Enterococcus gilvus prokMSA_id:72595 Enterococcus sp. AK61 prokMSA_id:73484 Enterococcus casseliflavus CCM 4870 prokMSA_id:74720 Enterococcus hirae strain DSM20160 prokMSA_id:75570 Swine manure RT-21 prokMSA_id:76721 Enterococcus faecium complete prokMSA_id:84132 Enterococcus sulfureus strain A36202 prokMSA_id:88240 Enterococcus sp. CDC PNS-E1 AY321375 prokMSA_id:90221 Enterococcus sp. CDC PNS-E3 AY321377 2.30.7.21 STREPTOCOCCI 300 seqs 2.30.7.21.1 LCC.LACTIS_SUBGROUP 50 seqs 2.30.7.21.1.3327 OTU 1 seq prokMSA_id:54794 Streptococcus sp. clone KL-36-1-14 2.30.7.21.1.3434 OTU 1 seq prokMSA_id:78015 Lactococcus sp. clone:Rs-C68 2.30.7.21.1.3436 OTU 10 seqs prokMSA_id:15348 Lactococcus garvieae JCM 8735 prokMSA_id:19276 Lactococcus garvieae strain FLG4 AF352164 prokMSA_id:28491 Lactococcus garvieae strain FLG2 AF352163 prokMSA_id:31382 Lactococcus garvieae strain FLG12 AF352166 prokMSA_id:36458 Enterococcus seriolicida AF061005 prokMSA_id:39953 Enterococcus seriolicida AB026843 prokMSA_id:44780 Enterococcus sp. U1-1 prokMSA_id:45250 Lactococcus garvieae complete prokMSA_id:45788 Enterococcus sp. U5-1 prokMSA_id:48070 Lactococcus garvieae strain FLG5 AF352165 2.30.7.21.1.3558 OTU 1 seq prokMSA_id:78223 Lactococcus sp. clone:Rs-B70 2.30.7.21.1.3722 OTU 37 seqs prokMSA_id:15343 Lactococcus lactis str. IL 1403 prokMSA_id:15345 Lactococcus lactis subsp. cremoris ATCC 19257 prokMSA_id:30402 Lactococcus sp. clone KL-86-2-7 prokMSA_id:48928 Lactococcus lactis subsp. lactis IL1403 complete genome AE00 prokMSA_id:54615 Lactococcus lactis subsp. lactis complete genome NC_002662 prokMSA_id:58588 Lactococcus lactis subsp. lactis prokMSA_id:64379 Lactococcus lactis subsp. lactis strain RO6 complete prokMSA_id:64380 Lactococcus lactis subsp. lactis strain RO37 complete prokMSA_id:64382 Lactococcus lactis subsp. lactis strain RO3 complete prokMSA_id:66046 Lactococcus lactis strain 04 prokMSA_id:66047 Lactococcus lactis strain MRS5 prokMSA_id:66048 Lactococcus lactis strain MRS2 prokMSA_id:66049 Lactococcus lactis strain MRS1 prokMSA_id:66568 amplicon F prokMSA_id:69977 Lactococcus lactis and internal transcribed spacer 1 ITS1 st prokMSA_id:75483 Swine manure RT-3A prokMSA_id:75681 Swine manure RT-6B prokMSA_id:82870 Lactococcus lactis strain: NIRD 712 AB100796 prokMSA_id:83001 Lactococcus lactis subsp. lactis strain: NCDO 604T AB100803 prokMSA_id:83027 Lactococcus lactis subsp. lactis strain: NIAI SLN AB100797 prokMSA_id:83318 Lactococcus lactis subsp. lactis bv. diacetylactis strain: N prokMSA_id:83325 Lactococcus lactis subsp. lactis bv. diacetylactis strain: N prokMSA_id:83390 Lactococcus lactis subsp. cremoris strain: NIAI H-61 AB10079 prokMSA_id:83439 Lactococcus lactis subsp. lactis MR17 complete prokMSA_id:83464 Lactococcus lactis subsp. cremoris strain: NIRD 924 AB100794 prokMSA_id:84466 Lactococcus lactis subsp. cremoris strain: NCDO 607T AB10080 prokMSA_id:84491 Lactococcus lactis subsp. lactis bv. diacetylactis strain: N prokMSA_id:84539 Lactococcus lactis subsp. hordniae strain: NCDO 2181T prokMSA_id:84578 Lactococcus lactis subsp. lactis bv. diacetylactis strain: A prokMSA_id:84723 Lactococcus lactis subsp. cremoris strain: NIRD Ho-6 AB10079 prokMSA_id:85252 Lactococcus lactis subsp. lactis strain: NIAI 527 AB100795 prokMSA_id:85709 Lactococcus lactis subsp. lactis strain: NIRD SC-10 AB100798 prokMSA_id:85961 Lactococcus lactis subsp. cremoris strain: NIRD HC-1 AB10079 prokMSA_id:86118 Lactococcus lactis subsp. lactis MR26 complete prokMSA_id:86637 clone ER1_4 prokMSA_id:89935 HOClCi1 AY328550 prokMSA_id:92114 Lactococcus lactis subsp. lactis strain:K335 AB118033 2.30.7.21.2 STC.EQUI_SUBGROUP 3 seqs 2.30.7.21.2.3616 OTU 1 seq prokMSA_id:15354 Streptococcus equi subsp. equi ATCC 33398 2.30.7.21.2.3846 OTU 1 seq prokMSA_id:15355 Streptococcus equi subsp. zooepidemicus str. S 34 ATCC 43079 2.30.7.21.2.3869 OTU 1 seq prokMSA_id:81475 Streptococcus equi subsp. zooepidemicus strain:Tokyo1291 2.30.7.21.3 STC.PYOGENES_SUBGROUP 32 seqs 2.30.7.21.3.3462 OTU 1 seq prokMSA_id:22640 Streptococcus orisratti 2.30.7.21.3.3507 OTU 4 seqs prokMSA_id:28805 Streptococcus ferus strain HD3 prokMSA_id:35033 Streptococcus ferus strain LMG16520T prokMSA_id:37236 Streptococcus ferus prokMSA_id:39498 Streptococcus ferus strain 8S1 2.30.7.21.3.3533 OTU 1 seq prokMSA_id:22071 Streptococcus sp. strain 2285-97 2.30.7.21.3.3576 OTU 9 seqs prokMSA_id:15357 Streptococcus didelphis str. W95-108899177 prokMSA_id:15358 Streptococcus didelphis str. W95-018899131 prokMSA_id:15359 Streptococcus didelphis str. W94-11374-1 prokMSA_id:15360 Streptococcus didelphis str. W94-12010. AF176104 prokMSA_id:15361 Streptococcus didelphis str. 95-111064 prokMSA_id:15362 Streptococcus didelphis str. W95-2085-1 prokMSA_id:15363 Streptococcus didelphis str. 95-3349-1. AF176107 prokMSA_id:15364 Streptococcus didelphis str. W95-3565-7 prokMSA_id:15386 Streptococcus didelphis str. W95-4849 2.30.7.21.3.3699 OTU 16 seqs prokMSA_id:15372 Streptococcus agalactiae ATCC 13813 prokMSA_id:15373 Streptococcus agalactiae ATCC 27956 prokMSA_id:15374 Streptococcus agalactiae JCM 5671 prokMSA_id:15382 Streptococcus porcinus ATCC 43138 prokMSA_id:15383 Streptococcus agalactiae ATCC 23956 prokMSA_id:15425 Streptococcus agalactiae NCDO 1348 . X59032 prokMSA_id:55265 Streptococcus agalactiae 2603V/R section 2 of 100 of the com prokMSA_id:55977 Streptococcus agalactiae 2603V/R section 5 of 100 of the com prokMSA_id:57716 Streptococcus agalactiae NEM316 complete genome prokMSA_id:58770 Streptococcus agalactiae prokMSA_id:59530 Streptococcus agalactiae 2603V/R complete genome NC_004116 prokMSA_id:59711 Streptococcus agalactiae 2603V/R section 20 of 100 of the co prokMSA_id:59712 Streptococcus agalactiae 2603V/R section 17 of 100 of the co prokMSA_id:59713 Streptococcus agalactiae 2603V/R section 12 of 100 of the co prokMSA_id:59714 Streptococcus agalactiae 2603V/R section 8 of 100 of the com prokMSA_id:59717 Streptococcus agalactiae 2603V/R section 1 of 100 of the com 2.30.7.21.3.3907 OTU 1 seq prokMSA_id:15387 clone v6 2.30.7.21.5 STC.THORALTENSIS_SUBGROUP 1 seq 2.30.7.21.5.3789 OTU 1 seq prokMSA_id:15430 Streptococcus hyovaginalis str. SHV515 DSM 12219 2.30.7.21.6 STC.SALIVARIUS_SUBGROUP 49 seqs 2.30.7.21.6.3246 OTU 1 seq prokMSA_id:50264 Streptococcus ratti strain ATCC19645 2.30.7.21.6.3253 OTU 1 seq prokMSA_id:67823 clone 32CR complete 2.30.7.21.6.3250 OTU 13 seqs prokMSA_id:15478 Streptococcus bovis ATCC 33317 prokMSA_id:15484 Streptococcus infantarius str. HDP90104; SLB prokMSA_id:15485 Streptococcus bovis ATCC 27960 prokMSA_id:15486 Streptococcus equinus NCTC 9814 prokMSA_id:24015 Streptococcus infantarius subsp. infantarius prokMSA_id:25587 Streptococcus bovis prokMSA_id:30971 Streptococcus luteciae strain NEM 760 prokMSA_id:36122 Streptococcus bovis strain NCTC11436 prokMSA_id:36638 Streptococcus sp. LRC 0476 prokMSA_id:38058 Streptococcus infantarius subsp. coli prokMSA_id:39742 Streptococcus bovis strain B315 prokMSA_id:51368 Streptococcus equinus strain ATCC 9812 prokMSA_id:71159 Streptococcus equinus NCDO1037T complete 2.30.7.21.6.3313 OTU 8 seqs prokMSA_id:15459 Streptococcus salivarius str. C699 ATCC 13419 prokMSA_id:23153 Streptococcus sp. clone KL-48-1-4 prokMSA_id:31326 Streptococcus sp. clone KL-27-1-5 prokMSA_id:41340 Streptococcus sp. clone KL-86-2-9 prokMSA_id:56634 Streptococcus salivarius prokMSA_id:80065 Streptococcus vestibularis strain ATCC 49124 complete prokMSA_id:80129 Streptococcus salivarius strain ATCC 7073 complete prokMSA_id:80926 Streptococcus thermophilus strain ATCC 19258 complete 2.30.7.21.6.3380 OTU 2 seqs prokMSA_id:27408 Streptococcus macacae strain NCTC11558 prokMSA_id:80258 Streptococcus macacae strain ATCC 35911 complete 2.30.7.21.6.3389 OTU 1 seq prokMSA_id:43122 Streptococcus criceti strain ATCC19642 2.30.7.21.6.3397 OTU 5 seqs prokMSA_id:15436 Streptococcus macedonicus str. LAB617 ACA-DC 206 prokMSA_id:15446 Streptococcus waiu str. 3/1; NZRCC 20100 prokMSA_id:42690 Streptococcus sp. LRC 0253 prokMSA_id:46517 Streptococcus sp. LRC 0255 prokMSA_id:58771 Streptococcus macedonicus 2.30.7.21.6.3422 OTU 5 seqs prokMSA_id:15434 Streptococcus thermophilus DSM 20617 prokMSA_id:42918 Streptococcus sp. clone KL-94-1-12 prokMSA_id:67808 Streptococcus sp. CR-314S clone crev-4 prokMSA_id:69863 clone 39CR complete prokMSA_id:70173 Human oral C23 2.30.7.21.6.3481 OTU 1 seq prokMSA_id:71312 human infant N108E 2.30.7.21.6.3543 OTU 1 seq prokMSA_id:15451 Streptococcus gallolyticus ACM 3969 2.30.7.21.6.3588 OTU 2 seqs prokMSA_id:72603 Streptococcus downei strain NCTC11391 prokMSA_id:80847 Streptococcus downei strain ATCC 33748 complete AY188350 2.30.7.21.6.3741 OTU 3 seqs prokMSA_id:15444 Streptococcus sobrinus NCTC 12279 prokMSA_id:70509 Streptococcus sobrinus strain 6715 prokMSA_id:80496 Streptococcus sobrinus strain ATCC 33478 complete 2.30.7.21.6.3863 OTU 1 seq prokMSA_id:15483 Streptococcus KN1 str. KN1 2.30.7.21.6.3906 OTU 5 seqs prokMSA_id:15437 Streptococcus bovis ATCC 43143 prokMSA_id:19466 clone p-4289-4Wa3 prokMSA_id:29347 Streptococcus pasteuri strain NEM1205 CIP 105073 prokMSA_id:39559 mpn-isolate group 11 prokMSA_id:44756 Streptococcus pasteuri strain NEM1202 CIP 105070 2.30.7.21.7 STC.CONSTELLATUS_SUBGROUP 17 seqs 2.30.7.21.7.3499 OTU 17 seqs prokMSA_id:15500 Streptococcus intermedius str. 125 prokMSA_id:15501 Streptococcus intermedius str. 488 prokMSA_id:15502 Streptococcus intermedius str. 535 prokMSA_id:15503 Streptococcus intermedius str. 539 prokMSA_id:15504 Streptococcus constellatus ATCC 27823 prokMSA_id:15505 Streptococcus constellatus str. 206 prokMSA_id:15569 Streptococcus sanguinis ATCC 10556 prokMSA_id:38234 Streptococcus sanguis strain ATCC 10556 prokMSA_id:58288 Streptococcus sanguinis strain ChDC OS38 prokMSA_id:58297 Streptococcus sanguinis strain ChDC B203 prokMSA_id:87435 Streptococcus constellatus strain 15 AY277939 prokMSA_id:87453 Streptococcus constellatus strain 919 AY277941 prokMSA_id:87466 Streptococcus constellatus strain 1192 AY277940 prokMSA_id:87550 Streptococcus constellatus strain 857 AY277938 prokMSA_id:87569 Streptococcus constellatus strain 1259 AY277942 prokMSA_id:87920 Streptococcus constellatus strain 1 AY277937 prokMSA_id:94436 Firmicute clone S15B-MN51 AJ583202 2.30.7.21.8 STC.SUIS_SUBGROUP 60 seqs 2.30.7.21.8.3305 OTU 1 seq prokMSA_id:26896 Streptococcus sp. S369-98-1 2.30.7.21.8.3340 OTU 1 seq prokMSA_id:15509 clone T46 2.30.7.21.8.3446 OTU 5 seqs prokMSA_id:15510 clone T44 prokMSA_id:35624 Streptococcus suis strain SAP 77 complete prokMSA_id:36287 Streptococcus bovis NCDO2127 prokMSA_id:51661 sheep mite Welshpool 44 prokMSA_id:78372 Streptococcus bovis strain HJ50 2.30.7.21.8.3560 OTU 1 seq prokMSA_id:63461 Streptococcus gallinaceus strain CCUG42692T 2.30.7.21.8.3637 OTU 1 seq prokMSA_id:70091 str. 37236 2.30.7.21.8.3709 OTU 1 seq prokMSA_id:15540 Streptococcus suis str. EA1832.92 2.30.7.21.8.3753 OTU 50 seqs prokMSA_id:15508 Streptococcus suis str. S735 NCTC 10234 prokMSA_id:15511 Streptococcus suis str. 5428 prokMSA_id:15512 Streptococcus suis str. 4961 prokMSA_id:15513 Streptococcus suis str. 6407 prokMSA_id:15514 Streptococcus suis str. 14636 prokMSA_id:15515 Streptococcus suis str. 22083 prokMSA_id:15516 Streptococcus suis str. 4417 prokMSA_id:15517 Streptococcus suis str. 12814 prokMSA_id:15518 Streptococcus suis str. 88308. AF009487 prokMSA_id:15519 Streptococcus suis str. 13730 prokMSA_id:15520 Streptococcus suis NCTC 1046. AF009490 prokMSA_id:15521 Streptococcus suis str. 2726 prokMSA_id:15522 Streptococcus suis str. 93A prokMSA_id:15523 Streptococcus suis str. NT77 prokMSA_id:15524 Streptococcus suis str. 42A prokMSA_id:15525 Streptococcus suis str. 14A prokMSA_id:15529 Streptococcus suis str. 89-2479 prokMSA_id:15530 Streptococcus suis str. 88-5299A prokMSA_id:15531 Streptococcus suis str. 89-3576 prokMSA_id:15532 Streptococcus suis str. 89-5259 prokMSA_id:15533 Streptococcus suis str. 89-590 prokMSA_id:15534 Streptococcus suis str. 92-1191 prokMSA_id:15535 Streptococcus suis str. 92-4172 prokMSA_id:15536 Streptococcus suis str. 88-5299A prokMSA_id:15537 Streptococcus suis str. 89-3576-3 prokMSA_id:15539 Streptococcus suis str. 89-5259 prokMSA_id:15541 Streptococcus suis str. S735 ATCC 43765 prokMSA_id:15542 Streptococcus suis str. 11538 prokMSA_id:15543 Streptococcus suis str. 2524 prokMSA_id:15544 Streptococcus suis str. 10581 prokMSA_id:15547 Streptococcus suis str. 92-1400 prokMSA_id:18069 Streptococcus suis cds strain:211 AB071344 prokMSA_id:19499 Streptococcus suis cds strain:222 AB071346 prokMSA_id:20126 Streptococcus suis complete prokMSA_id:20455 Streptococcus suis cds strain:220 AB071345 prokMSA_id:23271 Streptococcus suis cds strain:203 AB071341 prokMSA_id:24173 Streptococcus suis cds strain:193 AB071339 prokMSA_id:27714 Streptococcus suis cds strain:235 AB071349 prokMSA_id:29146 Streptococcus suis cds strain:226 prokMSA_id:29179 Streptococcus suis cds strain:243 AB071350 prokMSA_id:29248 Streptococcus suis complete prokMSA_id:31821 clone p-4747-2Wb2 prokMSA_id:33693 Streptococcus suis cds strain:209 AB071342 prokMSA_id:34124 Streptococcus suis cds strain:228 AB071348 prokMSA_id:34509 Streptococcus suis cds strain:194 prokMSA_id:36314 Streptococcus suis cds strain:NIAH11318 AB071338 prokMSA_id:46648 Streptococcus suis cds strain:210 AB071343 prokMSA_id:49657 Streptococcus suis cds strain:DAT2 AB071337 prokMSA_id:51021 Streptococcus suis complete prokMSA_id:51591 Streptococcus suis cds strain:DAT1 AB071336 2.30.7.21.9 STC.PNEUMONIAE_SUBGROUP 88 seqs 2.30.7.21.9.3251 OTU 4 seqs prokMSA_id:15567 Streptococcus cristatus str. CR311 NCTC 12479 prokMSA_id:53864 Streptococcus sp. oral strain B5SC prokMSA_id:66308 Streptococcus oligefermentans prokMSA_id:80267 Streptococcus cristatus strain ATCC 51100 complete AY188347 2.30.7.21.9.3287 OTU 1 seq prokMSA_id:47073 Streptococcus sp. oral clone FP015 2.30.7.21.9.3290 OTU 56 seqs prokMSA_id:15551 Streptococcus infantis str. O-122 JCM 10157 prokMSA_id:15552 Streptococcus mitis NCTC 12261 prokMSA_id:15554 Streptococcus oralis str. PB 182 ATCC 35037 prokMSA_id:15568 Streptococcus mitis ATCC 49456 prokMSA_id:15572 Streptococcus pneumoniae ATCC 33400 prokMSA_id:15573 Streptococcus pneumoniae MAFF 911410 prokMSA_id:18951 Streptococcus pneumoniae R6 section 168 of 184 of the comple prokMSA_id:26554 Streptococcus sp. NJ9704 prokMSA_id:26707 Streptococcus sp. 2061A prokMSA_id:27308 Streptococcus sp. oral clone AA007 prokMSA_id:28885 Streptococcus sp. oral strain 7A prokMSA_id:36398 Streptococcus sp. oral clone CH016 prokMSA_id:37656 Streptococcus mitis AF479580 prokMSA_id:39626 Streptococcus sp. 3170A AF316595 prokMSA_id:41742 Streptococcus mitis strain 127R AJ295848 prokMSA_id:41889 Streptococcus sp. 3097C prokMSA_id:42006 Streptococcus sp. PSH2 prokMSA_id:45312 Streptococcus pneumoniae R6 section 2 of 184 of the complete prokMSA_id:46365 Streptococcus mitis strain 209 AJ295853 prokMSA_id:47428 Streptococcus pneumoniae R6 section 162 of 184 of the comple prokMSA_id:48329 Streptococcus pneumoniae R6 section 153 of 184 of the comple prokMSA_id:52668 Streptococcus pneumoniae R6 complete genome NC_003098 prokMSA_id:53325 Streptococcus pneumoniae complete genome prokMSA_id:58287 Streptococcus mitis prokMSA_id:59561 Streptococcus sp. oral strain 12F prokMSA_id:59566 Streptococcus sp. oral clone FX003 prokMSA_id:69773 Streptococcus sp. oral clone BW009 prokMSA_id:70487 Streptococcus sp. 4093B prokMSA_id:70803 Streptococcus sp. oral clone DP009 prokMSA_id:70877 Streptococcus sp. oral clone DN025 prokMSA_id:71055 Streptococcus sp. oral clone BM035 prokMSA_id:71395 Streptococcus sp. oral clone EK048 prokMSA_id:71752 Streptococcus mitis bv2 prokMSA_id:72273 Streptococcus sp. 2056B AF316593 prokMSA_id:72990 Streptococcus sp. oral strain T4-E3 prokMSA_id:73251 Streptococcus sp. oral strain H6 prokMSA_id:73545 Streptococcus sp. oral strain T1-E5 prokMSA_id:73592 Streptococcus sp. oral strain H3-M2 prokMSA_id:81302 clone KM46 prokMSA_id:82688 Streptococcus sp. oral clone P4PA_30 P4 prokMSA_id:83689 Streptococcus sp. oral clone P4PA_13 P3 prokMSA_id:84858 Streptococcus sp. oral clone P2PA_41 P2 prokMSA_id:86104 Streptococcus sp prokMSA_id:86805 Streptococcus genomosp. C4 AY278632 prokMSA_id:87053 Streptococcus genomosp. C8 AY278609 prokMSA_id:88146 Streptococcus mitis ATCC 6249 AY281077 prokMSA_id:88205 Streptococcus mitis ATCC 15914 AY281076 prokMSA_id:88323 Streptococcus sanguinis ATCC 49296 AY281086 prokMSA_id:88494 Streptococcus pneumoniae ATCC 6303 AY281084 prokMSA_id:88719 Streptococcus pneumoniae ATCC 49619 AY281082 prokMSA_id:89429 Streptococcus pneumoniae ATCC 700669 AY281081 prokMSA_id:89930 Streptococcus oralis ATCC 9811 AY281079 prokMSA_id:90116 Streptococcus oralis ATCC 700233 AY281080 prokMSA_id:90432 Streptococcus sanguinis ATCC 29667 AY281085 prokMSA_id:90442 Streptococcus pneumoniae ATCC BAA-334 AY281083 prokMSA_id:94837 Firmicute clone S15B-MN30 AJ583201 2.30.7.21.9.3629 OTU 18 seqs prokMSA_id:15565 Streptococcus mutans NCTC 10449 prokMSA_id:51371 Human oral C29 prokMSA_id:55433 Streptococcus mutans strain UA96 ; tRNA-Ala complete ; 23S c prokMSA_id:57764 Streptococcus mutans UA159 section 171 of 185 of the complet prokMSA_id:57765 Streptococcus mutans UA159 section 154 of 185 of the complet prokMSA_id:57766 Streptococcus mutans UA159 section 151 of 185 of the complet prokMSA_id:57767 Streptococcus mutans UA159 section 17 of 185 of the complete prokMSA_id:57768 Streptococcus mutans UA159 section 2 of 185 of the complete prokMSA_id:69287 Streptococcus mutans strain UA140 ; tRNA-Ala complete ; 23S prokMSA_id:69297 Streptococcus mutans strain AF199 ; tRNA-Ala complete ; 23S prokMSA_id:72123 Streptococcus mutans strain 669 ; tRNA-Ala complete ; 23S co prokMSA_id:72641 Streptococcus mutans strain LM7 ; tRNA-Ala complete ; 23S co prokMSA_id:80416 Streptococcus mutans strain ATCC 25175 complete AY188348 prokMSA_id:81367 Streptococcus mutans strain LM7 complete AF077832 prokMSA_id:81591 Streptococcus mutans strain UA96 complete prokMSA_id:81886 Streptococcus mutans strain AF199 complete AF077833 prokMSA_id:82180 Streptococcus mutans strain 669 complete AF077834 prokMSA_id:82224 Streptococcus mutans strain UA140 complete 2.30.7.21.9.3685 OTU 6 seqs prokMSA_id:15563 Streptococcus gordonii str. SK 3 ATCC 10558 prokMSA_id:15576 Streptococcus mitis str. SK 51 NCTC 3165 prokMSA_id:36023 Streptococcus gordonii strain DL1 prokMSA_id:50550 Streptococcus sp. oral clone AY020 prokMSA_id:58289 Streptococcus sp. ChDC OS37 prokMSA_id:62977 Streptococcus sp. clone T10-23 rrn 2.30.7.21.9.3774 OTU 1 seq prokMSA_id:15564 clone v2 2.30.7.21.9.3796 OTU 1 seq prokMSA_id:15570 clone v3 2.30.7.21.9.3800 OTU 1 seq prokMSA_id:15571 clone v5 2.30.8 MYCOPLASMA_AND_RELATIVES 658 seqs 2.30.8.2 ACHOLEPLASMA-ANAEROPLASMA_GROUP 348 seqs 2.30.8.2.1 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_I 187 seqs 2.30.8.2.1.3932 OTU 2 seqs prokMSA_id:15647 unnamed organism prokMSA_id:72848 Phytoplasma sp. strain LD 2.30.8.2.1.3937 OTU 5 seqs prokMSA_id:63016 Cynodon white leaf phytoplasma prokMSA_id:69014 Bermuda grass white leaf phytoplasma complete ; tRNA-Ile com prokMSA_id:83287 Bermuda grass white leaf phytoplasma isolate BGWL-C2 prokMSA_id:83541 Bermuda grass white leaf phytoplasma isolate BGWL-CA prokMSA_id:86379 Bermuda grass white leaf phytoplasma isolate BGWL-C1 2.30.8.2.1.3948 OTU 1 seq prokMSA_id:64533 Candidatus Phytoplasma phoeniceum strain 21 ; 16-23S interge 2.30.8.2.1.3955 OTU 1 seq prokMSA_id:64303 Weeping tea tree witches'-broom phytoplasma complete ; tRNA- 2.30.8.2.1.3961 OTU 1 seq prokMSA_id:15644 unnamed organism 2.30.8.2.1.3963 OTU 3 seqs prokMSA_id:48457 Loofah witches'-broom phytoplasma strain LfWB clone 1 operon prokMSA_id:69009 Loofah witches'-broom phytoplasma tRNA-Ile complete ; 23S ; prokMSA_id:69018 Loofah witches'-broom phytoplasma complete ; tRNA-Ile comple 2.30.8.2.1.3976 OTU 6 seqs prokMSA_id:15598 Phytoplasma Virginia grapevine yellows phytoplasma VGYIII st prokMSA_id:17222 Black locust witches'-broom phytoplasma operon prokMSA_id:18521 Walnut witches' broom phytoplasma operon B prokMSA_id:33747 Poinsettia branch-inducing phytoplasma operon prokMSA_id:38010 Spiraea stunt phytoplasma operon A prokMSA_id:51281 Walnut witches' broom phytoplasma operon A 2.30.8.2.1.3975 OTU 5 seqs prokMSA_id:15597 str. CYE-C prokMSA_id:15599 Phytoplasma Clover yellow edge phytoplasma str. CYE-L prokMSA_id:37584 Strawberry leafy fruit phytoplasma prokMSA_id:38649 Black raspberry witches'-broom phytoplasma clone BRWB7 opero prokMSA_id:62836 Gaillardia phyllody phytoplasma ; tRNA-Ile complete ; and 23 2.30.8.2.1.3989 OTU 6 seqs prokMSA_id:15610 unnamed organism prokMSA_id:15639 unnamed organism prokMSA_id:15645 unnamed organism prokMSA_id:18103 Peach yellow leafroll mycoplasmalike organism prokMSA_id:18863 Western X mycoplasmalike organism prokMSA_id:43388 Chokecherry X disease mycoplasmalike organism 2.30.8.2.1.4004 OTU 1 seq prokMSA_id:15582 unnamed organism 2.30.8.2.1.4017 OTU 1 seq prokMSA_id:24669 Sugarcane phytoplasma C 2.30.8.2.1.4033 OTU 2 seqs prokMSA_id:15579 unnamed organism prokMSA_id:21474 Beet leafhopper transmitted virescence mycoplasmalike organi 2.30.8.2.1.4039 OTU 2 seqs prokMSA_id:15643 unnamed organism prokMSA_id:52553 Potato witches'-broom mycoplasmalike organism 2.30.8.2.1.4045 OTU 14 seqs prokMSA_id:15584 str. tsuwabuki witches' broom prokMSA_id:53311 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIIMor prokMSA_id:54971 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIICh1 prokMSA_id:55569 Tsuwabuki witches'-broom phytoplasma prokMSA_id:58988 Garlic Decline Phytoplasma -23S intergenic spacer region and prokMSA_id:58989 China-tree decline phytoplasma -23S intergenic spacer region prokMSA_id:63392 Phytoplasma sp. PY3 prokMSA_id:66027 Blueberry proliferation phytoplasma ; tRNA-Ile complete ; an prokMSA_id:66819 Cirsium white leaf phytoplasma operon B prokMSA_id:66824 Dandelion virescence phytoplasma operon A prokMSA_id:67362 Chinaberry yellows phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:69885 Sugarcane yellows phytoplasma I strain ScYP I-Barb ; tRNA-Il prokMSA_id:73130 Sugarcane yellows phytoplasma I strain ScYP I-Afr ; tRNA-Ile prokMSA_id:87775 Milkweed yellows phytoplasma ; -23S intergenic spacer region 2.30.8.2.1.4041 OTU 5 seqs prokMSA_id:15638 unnamed organism prokMSA_id:23748 Florida Pandanus decline phytoplasma AF361020 prokMSA_id:65941 Coconut lethal yellowing phytoplasma strain Florida LY-C2 AF prokMSA_id:65943 Coconut lethal yellowing phytoplasma strain Florida LYF-C5 prokMSA_id:65944 Coconut lethal yellowing phytoplasma strain Jamaica LYJ-C8 2.30.8.2.1.4044 OTU 6 seqs prokMSA_id:15591 unnamed organism. L33733 prokMSA_id:15594 unnamed organism prokMSA_id:18269 Red suture phytoplasma prokMSA_id:48082 Little peach phytoplasma prokMSA_id:52044 Peach rosette phytoplasma prokMSA_id:83476 Western X phytoplasma tRNA-Ser complete ; immunodominant pro 2.30.8.2.1.4046 OTU 4 seqs prokMSA_id:15583 unnamed organism. L33735 prokMSA_id:55620 Lactuca serriola phytoplasma strain P12 ; 16-23S intergenic prokMSA_id:63013 Sorghum grassy shoot phytoplasma variant II prokMSA_id:63014 Sorghum grassy shoot phytoplasma variant I 2.30.8.2.1.4053 OTU 3 seqs prokMSA_id:15613 Phytoplasma sp. str. StLL prokMSA_id:24602 Sugarcane phytoplasma J StLL prokMSA_id:69575 Stylosanthes little leaf phytoplasma and tRNA-Ile genes 2.30.8.2.1.4052 OTU 2 seqs prokMSA_id:15601 unnamed organism prokMSA_id:22080 Elm yellows mycoplasmalike organism in Chinese elm 2.30.8.2.1.4054 OTU 2 seqs prokMSA_id:15590 Phytoplasma sp. str. ViLL prokMSA_id:25555 Vigna little leaf phytoplasma 2.30.8.2.1.4060 OTU 10 seqs prokMSA_id:15585 unnamed organism prokMSA_id:43871 Carludovica palmata leaf yellowing phytoplasma AF237615 prokMSA_id:64249 Phytoplasma sp. LfY5PE65-Oaxaca prokMSA_id:64250 Phytoplasma sp. LfY5PE56-Oaxaca AF500333 prokMSA_id:64251 Phytoplasma sp. LfY4MA5-Oaxaca prokMSA_id:64252 Phytoplasma sp. LfY1-Guerrero prokMSA_id:64253 Phytoplasma sp. LfY4MA3-Oaxaca prokMSA_id:64254 Phytoplasma sp. LfY2Alv2-Guerrero prokMSA_id:68903 Texas Phoenix palm phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:72718 Yucatan coconut lethal decline phytoplasma 2.30.8.2.1.4066 OTU 1 seq prokMSA_id:15641 Phytoplasma sp. str. GaLL 2.30.8.2.1.4070 OTU 3 seqs prokMSA_id:15588 Phytoplasma Knautia arvensis phyllody phytoplasma prokMSA_id:26945 Honduran Gliricidia little leaf phytoplasma AF361017 prokMSA_id:92236 Phaseolus lunatus phytoplasma similar to and -23S intergenic 2.30.8.2.1.4078 OTU 1 seq prokMSA_id:54260 Hibiscus witches'-broom phytoplasma strain HibWB26 -23S inte 2.30.8.2.1.4083 OTU 1 seq prokMSA_id:53611 Phytoplasma sp. PinP intergenic spacer and tRNA-Ile 2.30.8.2.1.4084 OTU 1 seq prokMSA_id:15586 Mycoplasma sp. str. VAC 2.30.8.2.1.4086 OTU 1 seq prokMSA_id:15589 Phytoplasma Picris echioides yellows phytoplasma 2.30.8.2.1.4108 OTU 2 seqs prokMSA_id:15627 str. rice yellow dwarf prokMSA_id:62521 Rice yellow dwarf phytoplasma 2.30.8.2.1.4115 OTU 24 seqs prokMSA_id:15580 unnamed organism. U15442 prokMSA_id:15581 Phytoplasma Picris echioides phyllody phytoplasma. Y16393 prokMSA_id:15592 unnamed organism. L33765 prokMSA_id:15609 unnamed organism. L33770 prokMSA_id:15615 Mycoplasma sp. str. SUNHP prokMSA_id:15617 unnamed organism prokMSA_id:15618 Phytoplasma sp prokMSA_id:15619 unnamed organism. Y10096 prokMSA_id:15620 unnamed organism prokMSA_id:15621 Phytoplasma Gph subsp. Gerbera phyllody phytoplasma str. GPh prokMSA_id:15622 Phytoplasma Chinese pigeon pea witches'-broom phytoplasma prokMSA_id:15624 unnamed organism prokMSA_id:15625 Phytoplasma Italian alfalfa witches-broom phytoplasma prokMSA_id:15626 Phytoplasma sp. str. BoLL prokMSA_id:18469 Phytoplasma sp. pathovar mosaic-inducing complete prokMSA_id:20350 Potato purple top phytoplasma AF329315 prokMSA_id:28401 Cactus phytoplasma 'Martinez-Soriano 1999' complete prokMSA_id:41747 Pigeon pea little leaf phytoplasma prokMSA_id:42358 Cactus witches'-broom phytoplasma isolate YNO1 prokMSA_id:48933 Sweet potato little leaf phytoplasma strain V4 prokMSA_id:58026 'Vinca minor' phytoplasma prokMSA_id:60303 Omani alfalfa witches'-broom phytoplasma complete prokMSA_id:73858 Cocky apple witches' broom phytoplasma tRNA-Ile and prokMSA_id:96747 Alfalfa witches'-broom phytoplasma -23S intergenic spacer tR 2.30.8.2.1.4127 OTU 65 seqs prokMSA_id:15593 unnamed organism prokMSA_id:15602 str. FD prokMSA_id:15603 str. EY1 prokMSA_id:15604 Phytoplasma Elm yellows phytoplasma str. EY1 prokMSA_id:15605 Phytoplasma Elm yellows phytoplasma str. WVEY prokMSA_id:15606 Phytoplasma HD1 str. HD1 prokMSA_id:15607 Phytoplasma Alder yellows phytoplasma prokMSA_id:15608 Phytoplasma Rubus stunt phytoplasma prokMSA_id:15611 unnamed organism prokMSA_id:15612 Phytoplasma 'Fragaria multicipita' phytoplasma str. FRA9083 prokMSA_id:15614 unnamed organism prokMSA_id:15623 str. ULW prokMSA_id:15628 unnamed organism prokMSA_id:15630 str. ASHY prokMSA_id:15631 str. AshY1 prokMSA_id:15632 Phytoplasma Ash yellows phytoplasma str. AshY1 prokMSA_id:15633 Phytoplasma Ash yellows phytoplasma str. AshY3 prokMSA_id:15634 Phytoplasma Ash yellows phytoplasma str. AshY5 prokMSA_id:15635 Phytoplasma Ash yellows phytoplasma str. LWB3 prokMSA_id:17967 Alder yellows phytoplasma prokMSA_id:20661 'Fragaria multicipita' phytoplasma operon A prokMSA_id:25887 Flavescence doree phytoplasma operon prokMSA_id:42718 Zizyphus jujube witches'-broom phytoplasma prokMSA_id:43247 'Fragaria multicipita' phytoplasma operon B prokMSA_id:45354 Clover proliferation phytoplasma AF363066 prokMSA_id:50829 Clover proliferation phytoplasma strain EY-IL 2 prokMSA_id:52099 Clover proliferation phytoplasma strain EY-IL 1 prokMSA_id:54286 Ziziphus jujube witches'-broom phytoplasma ; -23S intergenic prokMSA_id:55407 Ziziphus jujube witches'-broom phytoplasma ; and tRNA-Ile co prokMSA_id:60512 Erigeron witches'-broom phytoplasma strain RPWB ; -23S inter prokMSA_id:66024 Erigeron witches'-broom phytoplasma ; tRNA-Ile complete ; an prokMSA_id:68906 Brinjal little leaf phytoplasma complete ; and tRNA-Ile comp prokMSA_id:69030 Periwinkle little leaf phytoplasma complete ; and tRNA-Ile c prokMSA_id:69629 Virginia creeper phytoplasma ; and tRNA-Ile complete prokMSA_id:69655 Elm phytoplasma 'Arlington Heights' ; tRNA-Ile complete ; an prokMSA_id:77772 Phytoplasma sp. JWB-Ko prokMSA_id:77969 Phytoplasma sp. JWB-F prokMSA_id:78043 Phytoplasma sp. JWB-G2 prokMSA_id:78260 Phytoplasma sp. JWB-G1 prokMSA_id:78322 Phytoplasma sp. JWB-Ky prokMSA_id:80823 Potato witches'-broom phytoplasma -23S intergenic spacer reg prokMSA_id:82781 Centaurea solstitialis virescence phytoplasma complete ; tRN prokMSA_id:86747 Alder yellows phytoplasma strain ALY882 AY197642 prokMSA_id:86755 Rubus stunt phytoplasma strain Rus400 AY197649 prokMSA_id:86783 Sunshine tree witches'-broom phytoplasma AY283184 prokMSA_id:86811 Peach yellows phytoplasma strain PY-In AY197660 prokMSA_id:86835 Cherry lethal yellows phytoplasma strain CLY-5 AY197659 prokMSA_id:86864 Flavescence doree phytoplasma strain FD70 AY197643 prokMSA_id:86960 Elm yellows phytoplasma strain EY-627 AY197658 prokMSA_id:87003 Flavescence doree phytoplasma strain FD-C AY197645 prokMSA_id:87073 Elm yellows phytoplasma strain EY-626 AY197657 prokMSA_id:87229 Spartium witches'-broom phytoplasma strain SpaWB251 AY197653 prokMSA_id:87307 Elm yellows phytoplasma strain EY1 AY197655 prokMSA_id:87317 Alder yellows phytoplasma strain ALY1068 AY197647 prokMSA_id:87456 Jujube witches'-broom phytoplasma strain JWB AY197661 prokMSA_id:87547 Flavescence doree phytoplasma strain FD-D AY197644 prokMSA_id:87635 Alder yellows phytoplasma strain ALY AY197646 prokMSA_id:87732 Hemp dogbane yellows phytoplasma strain HD1 AY197654 prokMSA_id:87774 Rubus stunt phytoplasma strain Rus971 AY197650 prokMSA_id:87911 Rubus stunt phytoplasma strain RuSR19 AY197651 prokMSA_id:87917 Elm yellows phytoplasma strain EY-125 AY197656 prokMSA_id:87980 Rubus stunt phytoplasma strain RUS AY197648 prokMSA_id:88039 Spartium witches'-broom phytoplasma strain SpaWB229 AY197652 prokMSA_id:91186 Nectarine yellows phytoplasma strain NecY-In1 AY332659 prokMSA_id:91757 Peach yellows phytoplasma strain PY-In2 AY332658 2.30.8.2.1.4138 OTU 1 seq prokMSA_id:23582 Ethiopian Gliricidia little leaf phytoplasma 2.30.8.2.1.4139 OTU 1 seq prokMSA_id:15636 str. SCWL 2.30.8.2.1.4146 OTU 1 seq prokMSA_id:15646 unnamed organism 2.30.8.2.1.4147 OTU 2 seqs prokMSA_id:15648 Phytoplasma sp. str. Coconut lethal yellowing disease prokMSA_id:15649 Phytoplasma sp. str. Coconut lethal yellowing disease. Y1417 2.30.8.2.1.4145 OTU 1 seq prokMSA_id:15640 Mycoplasma sp. str. BVK 2.30.8.2.2 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_II 20 seqs 2.30.8.2.2.3938 OTU 2 seqs prokMSA_id:15662 str. Apple proliferation prokMSA_id:27932 Apple proliferation MLO 2.30.8.2.2.4002 OTU 2 seqs prokMSA_id:15651 Phytoplasma sp prokMSA_id:93038 Apple proliferation phytoplasma isolate SPAR701 AJ430067 2.30.8.2.2.4003 OTU 1 seq prokMSA_id:15653 unnamed organism 2.30.8.2.2.4059 OTU 2 seqs prokMSA_id:15652 str. ACLR prokMSA_id:44020 Apricot chlorotic leafroll mycoplasmalike organism 2.30.8.2.2.4064 OTU 13 seqs prokMSA_id:15654 str. PPER prokMSA_id:15655 Phytoplasma sp. str. ESFY prokMSA_id:15656 Mycoplasma sp prokMSA_id:15657 Phytoplasma Pear decline phytoplasma prokMSA_id:15658 Phytoplasma Peach yellow leafroll phytoplasma prokMSA_id:15659 Mycoplasma sp. str. PD prokMSA_id:15661 Candidatus Phytoplasma mali IGS1 tRNA-Ile and 23S strain AT prokMSA_id:33402 Pear decline phytoplasma isolate PDE15 prokMSA_id:54668 European stone fruit yellows phytoplasma and 23S genes prokMSA_id:69015 Apple proliferation phytoplasma complete ; tRNA-Ile complete prokMSA_id:86991 Candidatus Phytoplasma prunorum tRNA-Ile and 23S strain ESFY prokMSA_id:87313 Candidatus Phytoplasma prunorum tRNA-Ile and 23S strain ESFY prokMSA_id:88051 Candidatus Phytoplasma pyri tRNA-Ile and 23S strain PD1 AJ54 2.30.8.2.3 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_III 65 seqs 2.30.8.2.3.3945 OTU 49 seqs prokMSA_id:15663 unnamed organism prokMSA_id:15677 str. onion yellows; tomato yellows mulberry dwarf; Paulownia prokMSA_id:15679 str. ACLR prokMSA_id:15680 str. SAY prokMSA_id:15681 Phytoplasma Alfalfa stunt phytoplasma str. AlfS prokMSA_id:15682 Phytoplasma sp. str. rape phylody prokMSA_id:15683 Phytoplasma STRAWB2 str. STRAWB2 prokMSA_id:15684 str. KV prokMSA_id:15685 unnamed organism prokMSA_id:15687 str. AAY prokMSA_id:17288 Cactus phytoplasma 'Martinez-Soriano 2001' prokMSA_id:18665 Phytoplasma sp. PY1 prokMSA_id:20556 Sugarcane phytoplasma G AY prokMSA_id:21066 Potato purple top phytoplasma prokMSA_id:21501 Clover phyllody phytoplasma strain CPh operon B prokMSA_id:21611 Paulownia witches'-broom phytoplasma prokMSA_id:21676 Aster yellows phytoplasma operon prokMSA_id:28502 Aster yellows phytoplasma strain AY1 clone 10 operon B prokMSA_id:30043 Aster yellows phytoplasma A isolate 98UW166A prokMSA_id:31795 Tomato big bud phytoplasma operon prokMSA_id:32190 Aster yellows phytoplasma strain AY1 clone 14 operon A prokMSA_id:33517 Sugarcane phytoplasma G AY variety Alu2 prokMSA_id:36905 Aster yellows phytoplasma A isolate 98UW159 prokMSA_id:37239 Aster yellows phytoplasma A isolate 99UW93 prokMSA_id:42685 Aster yellows phytoplasma prokMSA_id:44579 Aster yellows phytoplasma B isolate 99UW89 prokMSA_id:45677 Aster yellows phytoplasma A isolate 99UW111 prokMSA_id:46328 Aster yellows phytoplasma B isolate 99UW108 prokMSA_id:46674 Clover phyllody phytoplasma strain CPh operon A prokMSA_id:48464 Aster yellows phytoplasma O isolate 98UW166B prokMSA_id:50045 Carrot proliferation phytoplasma prokMSA_id:51779 Cirsium yellows phytoplasma prokMSA_id:55023 Mulberry dwarf phytoplasma ; -23S intergenic spacer region a prokMSA_id:55493 Valeriana yellows phytoplasma clone ValY2 operon prokMSA_id:56725 Phytoplasma sp. PY1 prokMSA_id:60545 Epilobium phyllody phytoplasma ; -23S intergenic spacer and prokMSA_id:62523 Onion yellows phytoplasma prokMSA_id:64235 Valeriana yellows phytoplasma clone ValY1 rrnB operon prokMSA_id:66025 Cherry little leaf phytoplasma prokMSA_id:66094 Aconitum proliferation phytoplasma ; tRNA-Ile complete ; and prokMSA_id:68930 'Rehmannia glutinosa var. purpurea' phytoplasma and tRNA-Ile prokMSA_id:71715 Phytoplasma sp. WDWB-K prokMSA_id:76240 Oat proliferation phytoplasma operon prokMSA_id:77493 'Helichrysum bracteatum' phytoplasma ; tRNA-Ile complete ; a prokMSA_id:79786 Paulownia witches'-broom phytoplasma prokMSA_id:82346 Maize bushy stunt phytoplasma operon prokMSA_id:84985 Marigold phyllody phytoplasma clone RIRM-2003.1 prokMSA_id:86083 Marigold phyllody phytoplasma clone RIRM-2003.2 prokMSA_id:87447 Strawberry phylloid fruit phytoplasma AY102275 2.30.8.2.3.3977 OTU 1 seq prokMSA_id:67193 Chinaberry yellows phytoplasma strain CbY1 ; -23S intergenic 2.30.8.2.3.4028 OTU 1 seq prokMSA_id:15674 Phytoplasma Bindweed yellows phytoplasma 2.30.8.2.3.4030 OTU 7 seqs prokMSA_id:15667 Phytoplasma sp. =rrnB operon prokMSA_id:15668 Mycoplasma sp. str. AGY prokMSA_id:15669 Phytoplasma Australian grapevine yellows phytoplasma subsp prokMSA_id:15670 unnamed organism prokMSA_id:15671 Phytoplasma Strawberry green petal phytoplasma str. SGP prokMSA_id:15672 Phytoplasma Strawberry lethal yellows phytoplasma str. SLY prokMSA_id:15675 Phytoplasma sp. = operon 2.30.8.2.3.4043 OTU 2 seqs prokMSA_id:15686 unnamed organism prokMSA_id:43213 Paulownia witches'-broom mycoplasmalike organism 2.30.8.2.3.4092 OTU 1 seq prokMSA_id:60694 Buckland valley grapevine yellows phytoplasma operon 2.30.8.2.3.4096 OTU 1 seq prokMSA_id:15664 unnamed organism 2.30.8.2.3.4101 OTU 1 seq prokMSA_id:32876 Candidatus Phytoplasma japonicum 2.30.8.2.3.4105 OTU 2 seqs prokMSA_id:15666 unnamed organism prokMSA_id:31476 Blueberry stunt mycoplasmalike organism 2.30.8.2.5 ACP.LAIDLAWII_SUBGROUP 7 seqs 2.30.8.2.5.3990 OTU 1 seq prokMSA_id:15689 Acholeplasma oculi ISM 1499 2.30.8.2.5.4005 OTU 1 seq prokMSA_id:15690 Acholeplasma oculi str. 19L ATCC 27350 2.30.8.2.5.4008 OTU 1 seq prokMSA_id:15694 unnamed organism 2.30.8.2.5.4055 OTU 3 seqs prokMSA_id:15691 Acholeplasma laidlawii str. PG8 ATCC 23206 prokMSA_id:15692 Acholeplasma laidlawii str. JA1 prokMSA_id:83638 Mesoplasma pleciae 2.30.8.2.5.4137 OTU 1 seq prokMSA_id:15693 clone RFN82 2.30.8.2.6 ACP.MODICUM_SUBGROUP 14 seqs 2.30.8.2.6.3962 OTU 1 seq prokMSA_id:50779 clone p-3870-23G5 2.30.8.2.6.3985 OTU 1 seq prokMSA_id:15700 clone RF39 2.30.8.2.6.3983 OTU 2 seqs prokMSA_id:21971 Acholeplasma axanthum prokMSA_id:30323 Acholeplasma axanthum strain 118 AJ311394 2.30.8.2.6.4000 OTU 1 seq prokMSA_id:29625 adhufec202 2.30.8.2.6.4009 OTU 1 seq prokMSA_id:15696 Mycoplasma feliminutum ATCC 25749 2.30.8.2.6.4010 OTU 1 seq prokMSA_id:15698 clone RF9 2.30.8.2.6.4025 OTU 1 seq prokMSA_id:40949 clone p-2601-9F5 2.30.8.2.6.4074 OTU 1 seq prokMSA_id:41875 clone p-2013-s959-5 2.30.8.2.6.4106 OTU 1 seq prokMSA_id:52403 clone p-3053-SwA5 2.30.8.2.6.4124 OTU 1 seq prokMSA_id:71687 adhufec279 2.30.8.2.6.4126 OTU 1 seq prokMSA_id:21634 clone p-3025-SwA5 2.30.8.2.6.4129 OTU 1 seq prokMSA_id:33343 clone p-3208-42A2 2.30.8.2.6.4132 OTU 1 seq prokMSA_id:21042 clone p-974-s962-5 2.30.8.2.8 C.RAMOSUM_ASSEMBLAGE 14 seqs 2.30.8.2.8.3933 OTU 1 seq prokMSA_id:51516 CCAJG3 2.30.8.2.8.3943 OTU 2 seqs prokMSA_id:36159 Coprobacillus catenaformis strain: JCM 10604 prokMSA_id:74862 Coprobacillus catenaformis strain: JCM 10603 2.30.8.2.8.3956 OTU 1 seq prokMSA_id:15716 Clostridium spiroforme DSM 1552 2.30.8.2.8.3959 OTU 2 seqs prokMSA_id:15711 Clostridium cocleatum str. CM972 prokMSA_id:45363 Clostridium cocleatum strain DSM 1551 2.30.8.2.8.3987 OTU 1 seq prokMSA_id:15710 clone vadinHA31 2.30.8.2.8.3988 OTU 1 seq prokMSA_id:15713 clone RFN20 2.30.8.2.8.3992 OTU 1 seq prokMSA_id:15714 clone RFN74 2.30.8.2.8.3993 OTU 1 seq prokMSA_id:15715 Clostridium spiroforme ATCC 29900 2.30.8.2.8.4065 OTU 2 seqs prokMSA_id:15709 Clostridium ramosum str. 113-I ATCC 25582 prokMSA_id:15712 Clostridium ramosum str. 113-I ATCC 25582 2.30.8.2.8.4075 OTU 1 seq prokMSA_id:51691 equine intestinal sp. ML30 clone ML30 2.30.8.2.8.4076 OTU 1 seq prokMSA_id:21822 Coprobacillus catenaformis strain: JCM 10605 2.30.8.2.9 EUB.CYLINDROIDES_SUBGROUP 41 seqs 2.30.8.2.9.144 OTU 1 seq prokMSA_id:15720 cylindroides ATCC 27528 2.30.8.2.9.149 OTU 1 seq prokMSA_id:15724 Streptococcus pleomorphus str. EFB 61/60B ATCC 29734 2.30.8.2.9.196 OTU 1 seq prokMSA_id:15736 biforme ATCC 27806 2.30.8.2.9.3939 OTU 2 seqs prokMSA_id:15734 Clostridium innocuum str. B-3 ATCC 14501 prokMSA_id:15735 str. CM970 2.30.8.2.9.3952 OTU 2 seqs prokMSA_id:77904 Erysipelothrix rhusiopathiae -23S spacer region strain:Pecs prokMSA_id:88075 Erysipelothrix inopinata strain 143-02 AJ550617 2.30.8.2.9.3958 OTU 1 seq prokMSA_id:27366 equine intestinal sp. MW03 clone MW03 2.30.8.2.9.3965 OTU 2 seqs prokMSA_id:59904 low G+C Gram-positive clone ccslm238 prokMSA_id:89878 Mollicutes pACH93 AY297808 2.30.8.2.9.3981 OTU 1 seq prokMSA_id:60757 low G+C Gram-positive clone PSB-M-3 2.30.8.2.9.3986 OTU 1 seq prokMSA_id:54730 clone p-2772-24E5 2.30.8.2.9.4006 OTU 1 seq prokMSA_id:15728 Holdemania filiformis str. J1-31B-1 ATCC 51649 2.30.8.2.9.4007 OTU 1 seq prokMSA_id:15729 tortuosum ATCC 25548 2.30.8.2.9.4011 OTU 1 seq prokMSA_id:15730 Erysipelothrix rhusiopathiae str. alpha-P15 ATCC 19414 2.30.8.2.9.4013 OTU 1 seq prokMSA_id:42372 cylindroides 2.30.8.2.9.4029 OTU 1 seq prokMSA_id:32694 CCAJG71 2.30.8.2.9.4038 OTU 6 seqs prokMSA_id:16818 Bulleidia moorei strain JCM 10645 prokMSA_id:19191 Solobacterium moorei isolate:RCA59-77 prokMSA_id:21980 Solobacterium moorei isolate:RCA59-74 prokMSA_id:22422 Bulleidia moorei strain AHP 13983 prokMSA_id:41366 Solobacterium moorei isolate:RCA59-75 prokMSA_id:41537 Solobacterium sp. oral clone K010 AY005052 2.30.8.2.9.4036 OTU 2 seqs prokMSA_id:39574 clone p-1630-c5 prokMSA_id:44294 clone p-326-a3 2.30.8.2.9.4068 OTU 1 seq prokMSA_id:42560 clone p-75-a5 2.30.8.2.9.4072 OTU 1 seq prokMSA_id:41982 CCAJG27 2.30.8.2.9.4071 OTU 1 seq prokMSA_id:52474 cf. Clostridium sp. MLG055 2.30.8.2.9.4091 OTU 3 seqs prokMSA_id:15722 sp. str. W 1365. Z36271 prokMSA_id:15723 sp. str. W 1365. U13036 prokMSA_id:31844 Bulleidia extructa 2.30.8.2.9.4094 OTU 1 seq prokMSA_id:15737 clone T21 2.30.8.2.9.4098 OTU 1 seq prokMSA_id:15739 dolichum ATCC 29143 2.30.8.2.9.4099 OTU 1 seq prokMSA_id:49837 cylindroides 2.30.8.2.9.4103 OTU 1 seq prokMSA_id:50433 clone p-392-o3 2.30.8.2.9.4125 OTU 1 seq prokMSA_id:43628 clone p-2731-24E5 2.30.8.2.9.4143 OTU 1 seq prokMSA_id:37902 Elbe River snow isolate Iso15_3 2.30.8.2.9.747 OTU 2 seqs prokMSA_id:15721 cylindroides ATCC 27803 prokMSA_id:72786 cylindroides 2.30.8.2.9.768 OTU 2 seqs prokMSA_id:15726 Erysipelothrix sp. str. Vadkasca prokMSA_id:15727 Erysipelothrix tonsillarum CCUG 31352 2.30.8.3 SPIROPLASMA_GROUP 80 seqs 2.30.8.3.1 M.MYCOIDES_SUBGROUP 61 seqs 2.30.8.3.1.3953 OTU 54 seqs prokMSA_id:15740 Mycoplasma capricolum ATCC 27343 =rrnB. X00921 prokMSA_id:15741 Mycoplasma mycoides subsp. capri str. PG3 =. U26036 prokMSA_id:15743 Mycoplasma mycoides subsp. mycoides str. UM30847 =rrnB prokMSA_id:15744 Mycoplasma capricolum subsp. capricolum str. California kid prokMSA_id:15746 Mycoplasma capricolum subsp. capripneumoniae str. 4/2LC prokMSA_id:15747 str. 7/1a. AF009838 prokMSA_id:15748 str. 8789 prokMSA_id:15749 str. 9081 prokMSA_id:15750 str. 91106/550/1 prokMSA_id:15751 str. 9231 prokMSA_id:15752 str. 95043 prokMSA_id:15753 str. GL102. AF009844 prokMSA_id:15754 str. M79/93 prokMSA_id:15755 Mycoplasma mycoides subsp. capri str. PG3 =rrnB prokMSA_id:15757 Mycoplasma sp. str. PG50 = prokMSA_id:15758 Mycoplasma capricolum subsp. capricolum str. California kid prokMSA_id:15759 str. 8756-13 prokMSA_id:15760 Mycoplasma mycoides subsp. mycoides str. PG1 =rrnB prokMSA_id:15761 Mycoplasma sp. str. PG50 = prokMSA_id:15762 Mycoplasma capricolum subsp. capricolum str. E570/iii =. U26 prokMSA_id:15763 Mycoplasma sp. str. F38 =rrnB operon prokMSA_id:15764 Mycoplasma mycoides subsp. mycoides str. UM30847 ATCC 33557. prokMSA_id:15765 Mycoplasma capricolum subsp. capricolum str. G5 =rrnB prokMSA_id:15766 Mycoplasma capricolum subsp. capricolum str. G5 = prokMSA_id:15767 Mycoplasma mycoides subsp. mycoides str. Y-goat = prokMSA_id:15768 Mycoplasma capricolum subsp. capripneumoniae str. 4/2LC prokMSA_id:15769 Mycoplasma sp. str. PG50 =rrnB prokMSA_id:15770 Mycoplasma mycoides subsp. mycoides str. Y-goat =rrnB prokMSA_id:15771 Mycoplasma mycoides subsp. mycoides str. PG1 = prokMSA_id:15772 Mycoplasma mycoides subsp. mycoides str. UM30847 = prokMSA_id:15773 Mycoplasma capricolum subsp. capripneumoniae str. F38 =. U26 prokMSA_id:15774 str. 7/1a. AF009830 prokMSA_id:15775 str. 8789. AF009831 prokMSA_id:15776 str. 9081. AF009832 prokMSA_id:15777 str. 91106/C550/1. AF009833 prokMSA_id:15778 str. 9231. AF009834 prokMSA_id:15779 str. 95043. AF009835 prokMSA_id:15780 str. GL102 prokMSA_id:15781 str. M79/93. AF009837 prokMSA_id:15782 Mycoplasma capricolum subsp. capricolum str. E570/iii =rrnB. prokMSA_id:20656 Mycoplasma capricolum capripneumoniae operon AF202925 prokMSA_id:22976 Mycoplasma capricolum subsp. capripneumoniae operon B prokMSA_id:27213 Mycoplasma capricolum capripneumoniae operon AF202923 prokMSA_id:30974 Mycoplasma capricolum capripneumoniae operon prokMSA_id:31582 Mycoplasma capricolum capripneumoniae rrnB operon AF202928 prokMSA_id:34810 Mycoplasma capricolum capripneumoniae rrnB operon prokMSA_id:35482 Mycoplasma capricolum subsp. capripneumoniae operon A AF2329 prokMSA_id:47300 Mycoplasma capricolum capripneumoniae rrnB operon AF202924 prokMSA_id:70102 Mycoplasma sp. 'bovine group 7' isolate 47 AF261729 prokMSA_id:70694 Mycoplasma sp. 'bovine group 7' isolate 57 prokMSA_id:71050 Mycoplasma sp. 'bovine group 7' isolate 4 AF261725 prokMSA_id:71421 Mycoplasma sp. 'bovine group 7' isolate 33 prokMSA_id:71703 Mycoplasma sp. 'bovine group 7' isolate 36 prokMSA_id:72686 Mycoplasma sp. 'bovine group 7' isolate 48 AF261730 2.30.8.3.1.3966 OTU 2 seqs prokMSA_id:15788 Mesoplasma seiffertii. L12056 prokMSA_id:85011 Mesoplasma syrphidae 2.30.8.3.1.4034 OTU 1 seq prokMSA_id:15756 Entomoplasma freundtii 2.30.8.3.1.4047 OTU 2 seqs prokMSA_id:70686 Entomoplasma lucivorax prokMSA_id:75155 Entomoplasma luminosum strain ATCC 49195 2.30.8.3.1.4112 OTU 1 seq prokMSA_id:77171 Entomoplasma somnilux 2.30.8.3.1.4110 OTU 1 seq prokMSA_id:71794 Mesoplasma lactucae ATCC 49193 2.30.8.3.2 M.PUTREFACIENS_SUBGROUP 4 seqs 2.30.8.3.2.3942 OTU 1 seq prokMSA_id:78432 Mesoplasma photuris 2.30.8.3.2.4062 OTU 3 seqs prokMSA_id:15784 Mycoplasma cottewii str. VIS ATCC 51347 . U67945 prokMSA_id:15785 Mycoplasma yeatsii str. GIH ATCC 51346 prokMSA_id:15786 Mycoplasma putrefaciens str. KS-1 = + rrnB 2.30.8.3.4 ENP.MELALEUCAE_SUBGROUP 8 seqs 2.30.8.3.4.3941 OTU 7 seqs prokMSA_id:15791 Entomoplasma melaleucae str. M1 ATCC 49191 . M24478 prokMSA_id:15792 Mycoplasma monodon str. Australiain. AF042194 prokMSA_id:70272 Mesoplasma entomophilum prokMSA_id:71542 Mesoplasma florum prokMSA_id:76006 Mesoplasma chauliocola prokMSA_id:77531 Mesoplasma grammopterae prokMSA_id:79099 Mesoplasma tabanidae 2.30.8.3.4.4012 OTU 1 seq prokMSA_id:75831 Mesoplasma corruscae 2.30.8.3.6 SPP.GLADIATORIS_SUBGROUP 1 seq 2.30.8.3.6.4120 OTU 1 seq prokMSA_id:15797 Spiroplasma taiwanense str. CT-1 ATCC 43302 2.30.8.3.7 SPP.CITRI_SUBGROUP 1 seq 2.30.8.3.7.4088 OTU 1 seq prokMSA_id:15800 Spiroplasma mirum str. SMCA ATCC 29335 2.30.8.3.8 SPP.IXODETIS_SUBGROUP 5 seqs 2.30.8.3.8.3960 OTU 5 seqs prokMSA_id:15805 Spiroplasma sp prokMSA_id:29463 Spiroplasma sp. SM prokMSA_id:41072 Spiroplasma sp. AJ006775 prokMSA_id:49332 Spiroplasma-symbiont of Antonina crawii prokMSA_id:53927 Spiroplasma sp. and 23S genes and 23S 2.30.8.4 M.PNEUMONIAE_GROUP 72 seqs 2.30.8.4.1 UPL.UREALYTICUM_SUBGROUP 29 seqs 2.30.8.4.1.3995 OTU 1 seq prokMSA_id:15830 Ureaplasma felinum str. FT2-B 2.30.8.4.1.3996 OTU 1 seq prokMSA_id:15831 Ureaplasma gallorale ATCC 43346 2.30.8.4.1.4035 OTU 1 seq prokMSA_id:15829 Ureaplasma cati str. F2 2.30.8.4.1.4032 OTU 1 seq prokMSA_id:15828 Ureaplasma canigenitalium str. D6P-C 2.30.8.4.1.4031 OTU 1 seq prokMSA_id:15827 Ureaplasma diversum str. A417 2.30.8.4.1.4093 OTU 24 seqs prokMSA_id:15806 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818 prokMSA_id:15807 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813. U06094 prokMSA_id:15808 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697 prokMSA_id:15809 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813. AF073458 prokMSA_id:15810 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697 prokMSA_id:15811 Ureaplasma urealyticum str. 27 prokMSA_id:15812 Ureaplasma urealyticum ATCC 27815. AF073456 prokMSA_id:15813 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818. AF07345 prokMSA_id:15814 Ureaplasma urealyticum str. 960 ATCC 27618 prokMSA_id:15815 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814 prokMSA_id:15816 Ureaplasma urealyticum str. 354 serovar 5 ATCC 27817 prokMSA_id:15817 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814. AF07344 prokMSA_id:15818 Ureaplasma urealyticum ATCC 27816. AF073447 prokMSA_id:15819 Ureaplasma urealyticum str. 354 serovar 5 ATCC 27817 prokMSA_id:15820 Ureaplasma urealyticum ATCC 27819 prokMSA_id:15821 Ureaplasma urealyticum str. 960 ATCC 27618 . AF073450 prokMSA_id:15822 Ureaplasma urealyticum ATCC 33175. AF073451 prokMSA_id:15823 Ureaplasma urealyticum ATCC 33699. AF073452 prokMSA_id:15824 Ureaplasma urealyticum ATCC 33695. AF073453 prokMSA_id:15825 Ureaplasma urealyticum ATCC 33696. AF073454 prokMSA_id:15826 Ureaplasma urealyticum ATCC 33698. AF073455 prokMSA_id:40947 Ureaplasma urealyticum section 13 of 59 of the complete geno prokMSA_id:48336 Ureaplasma urealyticum complete genome NC_002162 prokMSA_id:50881 Ureaplasma urealyticum section 28 of 59 of the complete geno 2.30.8.4.2 M.IOWAE_SUBGROUP 6 seqs 2.30.8.4.2.3998 OTU 1 seq prokMSA_id:15833 Mycoplasma penetrans str. GTU-54-6A1 2.30.8.4.2.4058 OTU 2 seqs prokMSA_id:15836 Mycoplasma iowae str. PPAV prokMSA_id:15839 Mycoplasma iowae 2.30.8.4.2.4135 OTU 1 seq prokMSA_id:15837 Mycoplasma fastidiosum str. 4822 2.30.8.4.2.4136 OTU 1 seq prokMSA_id:15838 Mycoplasma sp 2.30.8.4.2.4144 OTU 1 seq prokMSA_id:32823 clone:BCf1-07 2.30.8.4.3 M.GENITALIUM_SUBGROUP 7 seqs 2.30.8.4.3.4067 OTU 7 seqs prokMSA_id:15840 Mycoplasma genitalium str. G37 J.G. Tully ATCC 33530 prokMSA_id:15841 Mycoplasma genitalium str. G37. X77334 prokMSA_id:15842 Mycoplasma genitalium str. G37 = prokMSA_id:15844 Mycoplasma pneumoniae str. FH ATCC 15531 prokMSA_id:15845 Mycoplasma pneumoniae str. M129 prokMSA_id:15846 Mycoplasma pneumoniae str. FH ATCC 15531 . AF132740 prokMSA_id:15847 ATCC 29342. AF132741 2.30.8.4.4 M.GALLISEPTICUM_SUBGROUP 8 seqs 2.30.8.4.4.3940 OTU 5 seqs prokMSA_id:15852 Mycoplasma imitans str. 4229 prokMSA_id:15853 Mycoplasma gallisepticum str. A5969. M22441 prokMSA_id:15854 Mycoplasma gallisepticum str. S6 =rrn16 operon. L08896 prokMSA_id:15855 Mycoplasma gallisepticum str. S6; A5969 = operon prokMSA_id:89962 Mycoplasma gallisepticum strain R section 3 of 4 of the comp 2.30.8.4.4.4018 OTU 1 seq prokMSA_id:15848 Mycoplasma alvi str. Isley 2.30.8.4.4.4022 OTU 1 seq prokMSA_id:15850 Mycoplasma pirum str. HRC/70-159 ATCC 25960 2.30.8.4.4.4023 OTU 1 seq prokMSA_id:15851 Mycoplasma testudinis str. 010 ATCC 43263 2.30.8.4.5 HBN.FELIS_SUBGROUP 22 seqs 2.30.8.4.5.3931 OTU 1 seq prokMSA_id:49164 Mycoplasma ovis 2.30.8.4.5.4020 OTU 13 seqs prokMSA_id:15861 Haemobartonella felis prokMSA_id:23047 Haemobartonella felis prokMSA_id:31040 Haemobartonella canis prokMSA_id:50405 Haemobartonella canis AF407208 prokMSA_id:56527 Mycoplasma haemofelis prokMSA_id:58418 Mycoplasma haemofelis isolate UK no. 6 prokMSA_id:58421 Mycoplasma haemofelis isolate UK no. 5 AY150984 prokMSA_id:58425 Mycoplasma haemofelis isolate Australian no. 2 prokMSA_id:58426 Mycoplasma felis isolate Australian no. 1 AY150976 prokMSA_id:58429 Mycoplasma haemofelis isolate French no. 1 prokMSA_id:70879 Candidatus Mycoplasma haemominutum prokMSA_id:71517 Mycoplasma haemocanis isolate German no. 1 prokMSA_id:74226 Haemobartonella felis 2.30.8.4.5.4056 OTU 2 seqs prokMSA_id:15857 Eperythrozoon suis str. Zachary prokMSA_id:15859 Eperythrozoon suis str. Illinois 2.30.8.4.5.4114 OTU 6 seqs prokMSA_id:15856 Haemobartonella felis str. California prokMSA_id:50753 Haemobartonella felis AF271154 prokMSA_id:58423 Candidatus Mycoplasma haemominutum isolate UK no. 1 prokMSA_id:58424 Candidatus Mycoplasma haemominutum isolate South African no. prokMSA_id:70410 Candidatus Mycoplasma haemominutum isolate Australian no. 3 prokMSA_id:73873 Candidatus Mycoplasma haemominutum isolate UK no. 2 2.30.8.5 M.HOMINIS_GROUP 158 seqs 2.30.8.5.1 MYCOPLASMA.MOBILE 2 seqs 2.30.8.5.1.4089 OTU 1 seq prokMSA_id:42338 Mycoplasma moatsii 2.30.8.5.1.4116 OTU 1 seq prokMSA_id:15863 Mycoplasma mobile str. 163K ATCC 43663 2.30.8.5.2 M.HYOPNEUMONIAE_SUBGROUP 16 seqs 2.30.8.5.2.3927 OTU 2 seqs prokMSA_id:15880 Mycoplasma hyopneumoniae str. Weybridge ATCC 27719 prokMSA_id:21580 of Mycoplasma hyopneumoniae 2.30.8.5.2.3929 OTU 1 seq prokMSA_id:79153 Mycoplasma gypsbengalensis strain Gb-V33 2.30.8.5.2.3947 OTU 1 seq prokMSA_id:15865 Mycoplasma bovoculi str. M165/69 2.30.8.5.2.3971 OTU 3 seqs prokMSA_id:28253 Mycoplasma collis prokMSA_id:32835 Mycoplasma cricetuli prokMSA_id:56134 Mycoplasma collis ; -23S intergenic spacer complete ; and 23 2.30.8.5.2.3979 OTU 1 seq prokMSA_id:19656 Mycoplasma dispar 2.30.8.5.2.3982 OTU 1 seq prokMSA_id:33342 Mycoplasma molare 2.30.8.5.2.4024 OTU 1 seq prokMSA_id:15870 Mycoplasma ovipneumoniae str. Y-98 2.30.8.5.2.4027 OTU 1 seq prokMSA_id:15872 Mycoplasma conjunctivae str. HRC/583 2.30.8.5.2.4111 OTU 2 seqs prokMSA_id:15879 Mycoplasma sualvi str. Mayfield B ATCC 33004 . M23936 prokMSA_id:39647 Mycoplasma sualvi 2.30.8.5.2.4117 OTU 3 seqs prokMSA_id:15878 Mycoplasma hyorhinis ATCC VR-2580 prokMSA_id:31894 Mycoplasma hyorhinis prokMSA_id:42111 Mycoplasma hyorhinis strain BTS7 rrs 2.30.8.5.3 M.HOMINIS_SUBGROUP 37 seqs 2.30.8.5.3.3946 OTU 1 seq prokMSA_id:15897 Mycoplasma falconis str. H/T1 2.30.8.5.3.3949 OTU 1 seq prokMSA_id:60547 Mycoplasma timone 2.30.8.5.3.3957 OTU 2 seqs prokMSA_id:15896 Mycoplasma spumans str. PG13 prokMSA_id:59733 Mycoplasma spumans ; -23S intergenic spacer complete ; and 2 2.30.8.5.3.3970 OTU 6 seqs prokMSA_id:15884 Mycoplasma gateae ATCC 23392 prokMSA_id:15886 Mycoplasma canadense str. 275c prokMSA_id:15889 Mycoplasma alkalescens str. PG51 prokMSA_id:15894 Mycoplasma arginini ATCC 25528 prokMSA_id:15895 Mycoplasma arginini str. G230 prokMSA_id:15902 Mycoplasma auris str. UIA ATCC 51348 2.30.8.5.3.3991 OTU 2 seqs prokMSA_id:15900 Mycoplasma buccale str. CH20247 prokMSA_id:39619 Mycoplasma buccale U83502 2.30.8.5.3.3994 OTU 1 seq prokMSA_id:15901 Mycoplasma faucium str. DC333 2.30.8.5.3.3997 OTU 1 seq prokMSA_id:15905 Mycoplasma salivarium str. PG20 2.30.8.5.3.4019 OTU 1 seq prokMSA_id:72462 Mycoplasma phocae 2.30.8.5.3.4037 OTU 6 seqs prokMSA_id:15892 Mycoplasma hominis str. 183 prokMSA_id:19704 Mycoplasma hominis rrnB operon strain SC4 AJ002267 prokMSA_id:23718 Mycoplasma hominis rrnB operon strain PG21 AJ002265 prokMSA_id:40026 Mycoplasma hominis rrnB operon strain P2 AJ002268 prokMSA_id:49564 Mycoplasma hominis rrnB operon strain 7488 prokMSA_id:74598 Mycoplasma hominis rrnB operon strain DC63 2.30.8.5.3.4049 OTU 6 seqs prokMSA_id:15898 Mycoplasma hyosynoviae. U26730 prokMSA_id:18925 Mycoplasma hyosynoviae strain M309/84 prokMSA_id:31624 Mycoplasma hyosynoviae strain EU4a prokMSA_id:37697 Mycoplasma hyosynoviae strain SF9317 AF465776 prokMSA_id:40373 Mycoplasma hyosynoviae strain L44 prokMSA_id:49757 Mycoplasma hyosynoviae strain SAC63 2.30.8.5.3.4061 OTU 2 seqs prokMSA_id:15887 Mycoplasma anseris str. 1219 prokMSA_id:39995 Mycoplasma cloacale strain 383 2.30.8.5.3.4069 OTU 1 seq prokMSA_id:15891 Mycoplasma indiense str. 3T 2.30.8.5.3.4073 OTU 1 seq prokMSA_id:36302 Mycoplasma elephantis isolate E42 2.30.8.5.3.4097 OTU 1 seq prokMSA_id:15888 Mycoplasma subdolum str. TB 2.30.8.5.3.4100 OTU 1 seq prokMSA_id:72086 Mycoplasma equirhinis strain M432/72 2.30.8.5.3.4104 OTU 1 seq prokMSA_id:15899 Mycoplasma 'Grey Lung disease agent' 2.30.8.5.3.4102 OTU 1 seq prokMSA_id:67615 Mycoplasma zalophus 2.30.8.5.3.4128 OTU 1 seq prokMSA_id:15903 Mycoplasma gypis str. B1/T1 2.30.8.5.3.4141 OTU 1 seq prokMSA_id:71453 Mycoplasma phocicerebrale 2.30.8.5.4 M.AGASSIZII_SUBGROUP 6 seqs 2.30.8.5.4.3999 OTU 2 seqs prokMSA_id:15908 Mycoplasma sp. str. H3110 prokMSA_id:93639 Mycoplasma cheloniae strain BH29 AY366210 2.30.8.5.4.4014 OTU 3 seqs prokMSA_id:15910 Mycoplasma pulmonis str. PG34 prokMSA_id:49947 Mycoplasma pulmonis complete genome NC_002771 prokMSA_id:58394 Mycoplasma pulmonis strain UAB CTIP complete genome; segment 2.30.8.5.4.4134 OTU 1 seq prokMSA_id:15909 Mycoplasma pulmonis str. PG34 ATCC 19612 2.30.8.5.5 M.BOVIRHINIS_SUBGROUP 27 seqs 2.30.8.5.5.3928 OTU 1 seq prokMSA_id:72467 Mycoplasma mustelae 2.30.8.5.5.3930 OTU 1 seq prokMSA_id:15922 Mycoplasma gallinaceum str. DD 2.30.8.5.5.3936 OTU 2 seqs prokMSA_id:15928 Mycoplasma synoviae str. WVU 1853. L07757 prokMSA_id:15929 Mycoplasma synoviae str. WVU 1853 2.30.8.5.5.3935 OTU 1 seq prokMSA_id:15925 Mycoplasma 94630 str. 94630 2.30.8.5.5.3951 OTU 1 seq prokMSA_id:85218 Mycoplasma sp. VJC358 ; -23S intergenic spacer region comple 2.30.8.5.5.3967 OTU 1 seq prokMSA_id:69777 Mycoplasma buteonis 2.30.8.5.5.3968 OTU 2 seqs prokMSA_id:15926 Mycoplasma lacerti str. A21JP2. U56733 prokMSA_id:49382 Mycoplasma alligatoris 2.30.8.5.5.3974 OTU 1 seq prokMSA_id:70402 Mycoplasma citelli 2.30.8.5.5.3984 OTU 1 seq prokMSA_id:28733 Mycoplasma verecundum 2.30.8.5.5.4016 OTU 1 seq prokMSA_id:15918 Mycoplasma corogypsi str. BV1 ATCC 51148 2.30.8.5.5.4015 OTU 1 seq prokMSA_id:15916 Mycoplasma leonicaptivi ATCC 49890 2.30.8.5.5.4021 OTU 1 seq prokMSA_id:15920 Mycoplasma sturni str. UCMF; p170/171 ATCC 51945 2.30.8.5.5.4042 OTU 2 seqs prokMSA_id:15921 unnamed organism prokMSA_id:24960 Mycoplasma columborale 2.30.8.5.5.4057 OTU 2 seqs prokMSA_id:15919 Mycoplasma gallopavonis prokMSA_id:72545 Mycoplasma gallopavonis 2.30.8.5.5.4081 OTU 3 seqs prokMSA_id:15913 Mycoplasma edwardii str. PG24 prokMSA_id:70899 Mycoplasma canis AF412972 prokMSA_id:74000 Mycoplasma canis 2.30.8.5.5.4087 OTU 1 seq prokMSA_id:53013 Mycoplasma cynos 2.30.8.5.5.4107 OTU 1 seq prokMSA_id:71789 Mycoplasma anatis 2.30.8.5.5.4123 OTU 2 seqs prokMSA_id:15923 Mycoplasma crocodyli str. Mohan. U63137 prokMSA_id:32469 Mycoplasma crocodyli 2.30.8.5.5.4122 OTU 1 seq prokMSA_id:70918 Mycoplasma glycophilum 2.30.8.5.5.4148 OTU 1 seq prokMSA_id:15917 Mycoplasma felis ATCC 23391 2.30.8.5.6 M.HYOPHARYNGIS_SUBGROUP 1 seq 2.30.8.5.6.4113 OTU 1 seq prokMSA_id:15931 Mycoplasma hyopharyngis str. H3-6B F 2.30.8.5.7 M.AGALACTIAE_SUBGROUP 39 seqs 2.30.8.5.7.4040 OTU 2 seqs prokMSA_id:19193 Mycoplasma opalescens isolate MH5408 prokMSA_id:71629 Mycoplasma opalescens complete ; and 23S 2.30.8.5.7.4079 OTU 27 seqs prokMSA_id:15933 Mycoplasma agalactiae str. PG2 prokMSA_id:15934 Mycoplasma agalactiae str. PG2 NCTC 10123 . M24290 prokMSA_id:15935 Mycoplasma bovis str. Donetta prokMSA_id:15937 Mycoplasma bovis str. JTCL1 prokMSA_id:15940 Mycoplasma agalactiae str. Izat 17/95-96 prokMSA_id:15942 Mycoplasma bovis str. Donetta prokMSA_id:17045 Mycoplasma bovis strain 120/81 prokMSA_id:25799 Mycoplasma agalactiae strain 5632 AJ419903 prokMSA_id:31572 Mycoplasma agalactiae strain 4212 AJ419904 prokMSA_id:51117 Mycoplasma agalactiae strain 847.121 prokMSA_id:70015 Mycoplasma agalactiae strain 35 prokMSA_id:70591 Mycoplasma bovis strain M148/88 prokMSA_id:70634 Mycoplasma agalactiae strain 4136/96 no 2 prokMSA_id:70874 Mycoplasma agalactiae strain PG2 prokMSA_id:71393 Mycoplasma bovis strain PG45 prokMSA_id:71755 Mycoplasma agalactiae strain 5725 prokMSA_id:71854 Mycoplasma agalactiae strain 25/95 prokMSA_id:71989 Mycoplasma agalactiae strain 209 prokMSA_id:72350 Mycoplasma bovis strain 1067 prokMSA_id:72539 Mycoplasma agalactiae strain 6968 prokMSA_id:72986 Mycoplasma bovis strain L22 prokMSA_id:73088 Mycoplasma bovis strain MC3386 prokMSA_id:73175 Mycoplasma bovis strain 422/88 prokMSA_id:73703 Mycoplasma agalactiae strain 396/12 prokMSA_id:73746 Mycoplasma agalactiae strain L9 prokMSA_id:74108 Mycoplasma agalactiae strain 17 prokMSA_id:74234 Mycoplasma agalactiae strain M133/87 2.30.8.5.7.4080 OTU 2 seqs prokMSA_id:15944 Mycoplasma leopharyngis ATCC 49889 prokMSA_id:47885 Mycoplasma maculosum isolate PG15 2.30.8.5.7.4082 OTU 3 seqs prokMSA_id:15938 Mycoplasma primatum str. 243. AF013997 prokMSA_id:15939 Mycoplasma primatum str. Navel. AF013998 prokMSA_id:48246 Mycoplasma primatum isolate HRC292 2.30.8.5.7.4119 OTU 3 seqs prokMSA_id:15936 Mycoplasma sp. str. Patient#88 prokMSA_id:15945 Mycoplasma spermatophilum str. NC011720. AF013996 prokMSA_id:19645 Mycoplasma spermatophilum isolate AH159 2.30.8.5.7.4131 OTU 1 seq prokMSA_id:15943 Mycoplasma felifaucium ATCC 43428 2.30.8.5.7.4130 OTU 1 seq prokMSA_id:15941 Mycoplasma adleri str. G145 ATCC 27948 2.30.8.5.8 M.MELEAGRIDIS_SUBGROUP 30 seqs 2.30.8.5.8.3934 OTU 1 seq prokMSA_id:15953 Mycoplasma simbae ATCC 49888 2.30.8.5.8.3972 OTU 1 seq prokMSA_id:60702 Mycoplasma sp. HRC689 /23S intergenic spacer complete ; and 2.30.8.5.8.3969 OTU 2 seqs prokMSA_id:15948 Mycoplasma iners prokMSA_id:50081 Mycoplasma iners isolate PG30 2.30.8.5.8.3973 OTU 17 seqs prokMSA_id:19819 Mycoplasma bovigenitalium strain 2001-035TU prokMSA_id:55778 Mycoplasma bovigenitalium isolate 988/80 prokMSA_id:62437 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR99 prokMSA_id:62438 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR99 prokMSA_id:62440 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR98 prokMSA_id:62442 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 3SR99 prokMSA_id:62446 Mycoplasma bovigenitalium isolate 434/81 prokMSA_id:62449 Mycoplasma bovigenitalium strain PG 11 prokMSA_id:70063 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 126SR99 prokMSA_id:70186 Mycoplasma bovigenitalium isolate 57B00 prokMSA_id:71448 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 12SR98 prokMSA_id:71679 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 129SR99 prokMSA_id:72631 Mycoplasma bovigenitalium isolate 398/87 prokMSA_id:72958 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 122SR99 prokMSA_id:73778 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR98 prokMSA_id:73988 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 95SR99 prokMSA_id:74382 Mycoplasma sp. 'ovine/caprine serogroup 11' strain 2D 2.30.8.5.8.3978 OTU 1 seq prokMSA_id:70343 Mycoplasma columbinasale isolate 694 2.30.8.5.8.4001 OTU 1 seq prokMSA_id:73061 Mycoplasma caviae isolate G122 2.30.8.5.8.4077 OTU 1 seq prokMSA_id:23690 Mycoplasma equigenitalium isolate T37 2.30.8.5.8.4090 OTU 1 seq prokMSA_id:72219 Mycoplasma phocirhinis 2.30.8.5.8.4095 OTU 1 seq prokMSA_id:15954 Mycoplasma californicum str. ST-6 ATCC 33461 2.30.8.5.8.4121 OTU 1 seq prokMSA_id:71570 Mycoplasma columbinum isolate MMP-1 2.30.8.5.8.4133 OTU 1 seq prokMSA_id:19295 Mycoplasma lipofaciens isolate R171 2.30.8.5.8.4140 OTU 1 seq prokMSA_id:15947 Mycoplasma meleagridis str. 17529 2.30.8.5.8.4142 OTU 1 seq prokMSA_id:15949 Mycoplasma gallinarum str. PG16 2.30.9 CLOSTRIDIUM_AND_RELATIVES 726 seqs 2.30.9.1 C.LEPTUM_GROUP 451 seqs 2.30.9.1.1 C.THERMOCELLUM_SUBGROUP 114 seqs 2.30.9.1.1.4156 OTU 1 seq prokMSA_id:68943 clone RA9C1 2.30.9.1.1.4160 OTU 1 seq prokMSA_id:32194 rumen 5C0d-4 2.30.9.1.1.4159 OTU 1 seq prokMSA_id:15993 clone RFN25 2.30.9.1.1.4166 OTU 1 seq prokMSA_id:16796 clone p-3230-42A2 2.30.9.1.1.4168 OTU 1 seq prokMSA_id:62641 clone 29D19 2.30.9.1.1.4171 OTU 1 seq prokMSA_id:16002 clone JW32 2.30.9.1.1.4173 OTU 1 seq prokMSA_id:78088 Clostridiaceae clone:Rs-D81 2.30.9.1.1.4183 OTU 1 seq prokMSA_id:17822 clone p-1014-a5 2.30.9.1.1.4187 OTU 1 seq prokMSA_id:70302 Clostridiales oral clone P4PB_122 P3 2.30.9.1.1.4188 OTU 1 seq prokMSA_id:82466 clone ZZ12C1 2.30.9.1.1.4192 OTU 1 seq prokMSA_id:43660 low G+C Gram-positive MERTZ_2CM_209 2.30.9.1.1.4201 OTU 1 seq prokMSA_id:44398 clone RFLP 50E 2.30.9.1.1.4214 OTU 1 seq prokMSA_id:82486 rumen clone BS4 2.30.9.1.1.4217 OTU 1 seq prokMSA_id:35027 clone g3B5 2.30.9.1.1.4218 OTU 1 seq prokMSA_id:18115 from anoxic bulk soil clone BSV89 2.30.9.1.1.4222 OTU 1 seq prokMSA_id:63236 clone FW105 2.30.9.1.1.4227 OTU 1 seq prokMSA_id:36705 clone p-52-a5 2.30.9.1.1.4233 OTU 1 seq prokMSA_id:48899 clone p-1062-a5 2.30.9.1.1.4232 OTU 1 seq prokMSA_id:41245 tbr4-15 2.30.9.1.1.4243 OTU 1 seq prokMSA_id:27881 clone RA13C3 2.30.9.1.1.4241 OTU 1 seq prokMSA_id:69942 clone p-4154-6Wa5 2.30.9.1.1.4244 OTU 1 seq prokMSA_id:77963 Clostridiaceae clone:Rs-K46 2.30.9.1.1.4254 OTU 1 seq prokMSA_id:81069 Clostridiaceae clone: Rs-057 2.30.9.1.1.4256 OTU 1 seq prokMSA_id:45715 rumen 4C28d-18 2.30.9.1.1.4263 OTU 1 seq prokMSA_id:29311 Clostridiaceae str. 80Wd 2.30.9.1.1.4278 OTU 1 seq prokMSA_id:77360 clone R1p16 2.30.9.1.1.4282 OTU 1 seq prokMSA_id:53929 clone p-3024-SwA5 2.30.9.1.1.4285 OTU 1 seq prokMSA_id:35135 clone g3Br5 2.30.9.1.1.4286 OTU 1 seq prokMSA_id:81242 Clostridiaceae clone: Rs-L37 2.30.9.1.1.4288 OTU 1 seq prokMSA_id:82046 Clostridiaceae clone: Rs-L38 2.30.9.1.1.4297 OTU 1 seq prokMSA_id:63296 clone RCP2-43 2.30.9.1.1.4299 OTU 1 seq prokMSA_id:81326 Clostridiaceae clone: Rs-L02 2.30.9.1.1.4300 OTU 1 seq prokMSA_id:82058 Clostridiaceae clone: Rs-060 2.30.9.1.1.4301 OTU 2 seqs prokMSA_id:28666 human oral A35 AF201985 prokMSA_id:72439 Firmicutes sp. oral clone F058 2.30.9.1.1.4308 OTU 1 seq prokMSA_id:71644 feedlot manure B78 2.30.9.1.1.4310 OTU 1 seq prokMSA_id:82036 Clostridiaceae clone: Rs-056 2.30.9.1.1.4311 OTU 2 seqs prokMSA_id:15970 clone RC38 prokMSA_id:16005 clone RFN23 2.30.9.1.1.4342 OTU 2 seqs prokMSA_id:30916 clone g3R1 prokMSA_id:49948 clone g3W3 2.30.9.1.1.4345 OTU 1 seq prokMSA_id:15975 clone RFN72 2.30.9.1.1.4344 OTU 1 seq prokMSA_id:15974 clone RFN28 2.30.9.1.1.4349 OTU 1 seq prokMSA_id:15977 Clostridium josui str. III FERM P-9684 2.30.9.1.1.4356 OTU 1 seq prokMSA_id:15982 clone RFN80 2.30.9.1.1.4355 OTU 1 seq prokMSA_id:15981 clone JW26 2.30.9.1.1.4354 OTU 1 seq prokMSA_id:16925 firmicute clone BIri47 2.30.9.1.1.4360 OTU 1 seq prokMSA_id:15989 Clostridium thermocellum DSM 1237 2.30.9.1.1.4358 OTU 1 seq prokMSA_id:15986 clone WsCH8 2.30.9.1.1.4364 OTU 1 seq prokMSA_id:69664 Clostridiales oral clone MCE3_9 E1 2.30.9.1.1.4370 OTU 1 seq prokMSA_id:15991 clone JW21 2.30.9.1.1.4371 OTU 1 seq prokMSA_id:15992 clone RFN16 2.30.9.1.1.4376 OTU 1 seq prokMSA_id:15995 clone RFN8 2.30.9.1.1.4375 OTU 1 seq prokMSA_id:15994 clone RFN70 2.30.9.1.1.4374 OTU 1 seq prokMSA_id:74480 rumen 4C28d-12 2.30.9.1.1.4377 OTU 1 seq prokMSA_id:55772 low G+C Gram-positive clone ML635J-65 2.30.9.1.1.4386 OTU 1 seq prokMSA_id:19341 equine intestinal sp. ML23 clone ML23 2.30.9.1.1.4389 OTU 1 seq prokMSA_id:16004 clone 12-124 2.30.9.1.1.4405 OTU 1 seq prokMSA_id:31444 clone BA143 complete 2.30.9.1.1.4406 OTU 1 seq prokMSA_id:77727 Clostridiaceae clone:Rs-J39 2.30.9.1.1.4416 OTU 1 seq prokMSA_id:32177 Saltmarsh clone LCP-84 2.30.9.1.1.4420 OTU 1 seq prokMSA_id:29174 clone g3P17 2.30.9.1.1.4424 OTU 1 seq prokMSA_id:77738 Clostridiaceae clone:Rs-M05 2.30.9.1.1.4428 OTU 1 seq prokMSA_id:16692 rumen 3C0d-12 2.30.9.1.1.4440 OTU 2 seqs prokMSA_id:15971 clone RF6 prokMSA_id:15973 clone RF34. AF001765 2.30.9.1.1.4445 OTU 1 seq prokMSA_id:42029 rumen 5C0d-12 2.30.9.1.1.4442 OTU 1 seq prokMSA_id:15972 clone RF10 2.30.9.1.1.4444 OTU 1 seq prokMSA_id:15976 str. JTB32 2.30.9.1.1.4447 OTU 1 seq prokMSA_id:47100 clone p-1565-b5 2.30.9.1.1.4455 OTU 1 seq prokMSA_id:53642 Clostridium thermosuccinogenes strain DSM 5807 2.30.9.1.1.4453 OTU 1 seq prokMSA_id:71095 feedlot manure B4 2.30.9.1.1.4463 OTU 1 seq prokMSA_id:50120 from anoxic bulk soil clone BSV72 2.30.9.1.1.4477 OTU 1 seq prokMSA_id:78383 Clostridiaceae clone:Rs-N85 2.30.9.1.1.4479 OTU 1 seq prokMSA_id:44693 clone L10-14 2.30.9.1.1.4483 OTU 1 seq prokMSA_id:22115 clone p-2406-55G5 2.30.9.1.1.4487 OTU 1 seq prokMSA_id:40486 equine intestinal sp. CL36 clone CL36 2.30.9.1.1.4486 OTU 1 seq prokMSA_id:21032 clone g3H3 2.30.9.1.1.4488 OTU 1 seq prokMSA_id:48313 clone RA13C2 2.30.9.1.1.4503 OTU 1 seq prokMSA_id:78199 Clostridiaceae clone:Rs-H83 2.30.9.1.1.4501 OTU 1 seq prokMSA_id:17517 sp. oral clone BU014 2.30.9.1.1.4502 OTU 1 seq prokMSA_id:59826 clone BB2_90 2.30.9.1.1.4515 OTU 1 seq prokMSA_id:52211 clone p-1772-c3 2.30.9.1.1.4527 OTU 1 seq prokMSA_id:17384 rumen 5C3d-17 2.30.9.1.1.4531 OTU 1 seq prokMSA_id:29902 rumen 4C0d-17 2.30.9.1.1.4536 OTU 2 seqs prokMSA_id:62670 low G+C Gram-positive clone ML635J-14 prokMSA_id:62672 low G+C Gram-positive clone ML635J-38 2.30.9.1.1.4534 OTU 2 seqs prokMSA_id:15959 Clostridium FCB45 str. FCB45 prokMSA_id:15960 Clostridium FCG90-1 str. FCB90-1 2.30.9.1.1.4556 OTU 1 seq prokMSA_id:24765 rumen 4C0d-14 2.30.9.1.1.4573 OTU 2 seqs prokMSA_id:15963 Clostridium termitidis DSM 5396 prokMSA_id:15980 Clostridium cellobioparum DSM 1351 2.30.9.1.1.4586 OTU 2 seqs prokMSA_id:24626 clone GOUTA8 prokMSA_id:50158 clone GOUTB10 2.30.9.1.1.4584 OTU 3 seqs prokMSA_id:15957 Clostridium papyrosolvens ATCC 35413 prokMSA_id:15961 Clostridium FCB90-2 str. FCB90-2 prokMSA_id:15962 Clostridium sp. str. RCel1 2.30.9.1.1.4588 OTU 2 seqs prokMSA_id:15984 clone RC4 prokMSA_id:15990 clone RC31 2.30.9.1.1.4595 OTU 1 seq prokMSA_id:35260 clone p-2531-18B5 2.30.9.1.1.4605 OTU 3 seqs prokMSA_id:22883 from anoxic bulk soil clone BSV30 AJ229192 prokMSA_id:35019 from anoxic bulk soil clone BSV29 prokMSA_id:50695 from anoxic bulk soil clone BSV31 2.30.9.1.1.4615 OTU 1 seq prokMSA_id:15955 Bacteroides cellulosolvens ATCC 35603 2.30.9.1.1.4614 OTU 2 seqs prokMSA_id:15983 Clostridium thermocellum prokMSA_id:81208 Clostridium sp. JC3 2.30.9.1.1.4617 OTU 1 seq prokMSA_id:15956 clone WCHA1-45 2.30.9.1.1.4621 OTU 1 seq prokMSA_id:26721 rumen 5C0d-14 2.30.9.1.1.4622 OTU 1 seq prokMSA_id:81946 Clostridiaceae clone: Rs-L36 2.30.9.1.1.4625 OTU 1 seq prokMSA_id:42707 equine intestinal sp. PW15 clone PW15 2.30.9.1.1.4631 OTU 1 seq prokMSA_id:42636 clone p-208-o5 2.30.9.1.1.4636 OTU 1 seq prokMSA_id:38025 clone g3S5 2.30.9.1.1.4638 OTU 1 seq prokMSA_id:18935 equine intestinal sp. DW12 clone DW12 2.30.9.1.1.4643 OTU 1 seq prokMSA_id:15969 Clostridium aldrichii DSM 6159 2.30.9.1.2 C.THERMOLACTICUM_SUBGROUP 5 seqs 2.30.9.1.2.4182 OTU 1 seq prokMSA_id:16010 clone JW19 2.30.9.1.2.4216 OTU 1 seq prokMSA_id:19380 feedlot manure B82 2.30.9.1.2.4291 OTU 1 seq prokMSA_id:62669 low G+C Gram-positive clone ML635J-21 2.30.9.1.2.4394 OTU 1 seq prokMSA_id:16009 unnamed organism 2.30.9.1.2.4554 OTU 1 seq prokMSA_id:81528 Clostridiaceae clone: Rs-068 2.30.9.1.3 C.LEPTUM_SUBGROUP 326 seqs 2.30.9.1.3.4152 OTU 3 seqs prokMSA_id:33458 CCAJG144 AF429364 prokMSA_id:33914 clone p-4177-6Wa5 prokMSA_id:34444 CCAJG52 AF429363 2.30.9.1.3.4149 OTU 1 seq prokMSA_id:30476 adhufec108 2.30.9.1.3.4150 OTU 1 seq prokMSA_id:36503 clone p-4322-4Wa3 2.30.9.1.3.4151 OTU 1 seq prokMSA_id:29029 clone p-1293-a5 2.30.9.1.3.4157 OTU 1 seq prokMSA_id:77693 Clostridiaceae clone:Rs-A15 2.30.9.1.3.4155 OTU 1 seq prokMSA_id:77833 Clostridiaceae clone:Rs-K92 2.30.9.1.3.4158 OTU 1 seq prokMSA_id:19521 adhufec101 2.30.9.1.3.4167 OTU 1 seq prokMSA_id:77698 Clostridiaceae clone:Rs-D76 2.30.9.1.3.4165 OTU 1 seq prokMSA_id:16040 Ruminococcus flavefaciens str. AR46 2.30.9.1.3.4164 OTU 1 seq prokMSA_id:17850 ckncm322-B3-7 2.30.9.1.3.4179 OTU 1 seq prokMSA_id:16047 Clostridium sporosphaeroides ATCC 25781 2.30.9.1.3.4180 OTU 1 seq prokMSA_id:77848 Clostridiaceae clone:Rs-M23 2.30.9.1.3.4184 OTU 1 seq prokMSA_id:37423 clone:BCf4-08 2.30.9.1.3.4186 OTU 1 seq prokMSA_id:23194 equine intestinal sp. PL29 clone PL29 2.30.9.1.3.4199 OTU 1 seq prokMSA_id:36378 clone p-1528-b5 2.30.9.1.3.4198 OTU 3 seqs prokMSA_id:19089 adhufec269 AF132255 prokMSA_id:37799 clone p-2856-6C5 AF371798 prokMSA_id:55945 clone cadhufec17g05sav 2.30.9.1.3.4202 OTU 1 seq prokMSA_id:34823 clone p-5152-2Wb3 2.30.9.1.3.4205 OTU 1 seq prokMSA_id:30743 clone p-5291-2Wa3 2.30.9.1.3.4209 OTU 2 seqs prokMSA_id:25461 clone p-2622-9F5 AF371722 prokMSA_id:49605 clone p-3796-23G3 2.30.9.1.3.4212 OTU 1 seq prokMSA_id:81416 Clostridiaceae clone: Rs-061 2.30.9.1.3.4219 OTU 1 seq prokMSA_id:27876 equine intestinal sp. DW07 clone DW07 2.30.9.1.3.4223 OTU 1 seq prokMSA_id:73205 ckncm319-B7-19 2.30.9.1.3.4225 OTU 1 seq prokMSA_id:81980 Clostridiaceae clone: Rs-116 2.30.9.1.3.4224 OTU 1 seq prokMSA_id:16045 clone RC23 2.30.9.1.3.4230 OTU 1 seq prokMSA_id:37295 clone:BCf2-24 2.30.9.1.3.4235 OTU 1 seq prokMSA_id:40616 clone p-84-a5 2.30.9.1.3.4234 OTU 1 seq prokMSA_id:16379 rumen 3C0d-11 2.30.9.1.3.4239 OTU 1 seq prokMSA_id:26978 clone p-1741-b3 2.30.9.1.3.4238 OTU 1 seq prokMSA_id:43051 clone p-810-a5 2.30.9.1.3.4240 OTU 1 seq prokMSA_id:43052 clone p-878-a5 2.30.9.1.3.4242 OTU 1 seq prokMSA_id:81523 Clostridiaceae clone: Rs-072 2.30.9.1.3.4245 OTU 1 seq prokMSA_id:73946 clone p-2448-18B5 2.30.9.1.3.4246 OTU 1 seq prokMSA_id:32491 Clostridium leptum strain DSM 753T 2.30.9.1.3.4247 OTU 1 seq prokMSA_id:31763 clone p-193-o5 2.30.9.1.3.4252 OTU 1 seq prokMSA_id:38129 clone p-5460-2Wb5 2.30.9.1.3.4255 OTU 1 seq prokMSA_id:29495 clone p-2609-9F5 2.30.9.1.3.4253 OTU 1 seq prokMSA_id:51886 clone RFLP 17E 2.30.9.1.3.4251 OTU 1 seq prokMSA_id:19611 clone p-1674-b3 2.30.9.1.3.4260 OTU 1 seq prokMSA_id:28809 clone p-5228-4Wb5 2.30.9.1.3.4265 OTU 1 seq prokMSA_id:78138 Clostridiaceae clone:Rs-N70 2.30.9.1.3.4262 OTU 1 seq prokMSA_id:16067 Ruminococcus flavefaciens str. NJ 2.30.9.1.3.4261 OTU 1 seq prokMSA_id:77977 Clostridiaceae clone:Rs-G04 2.30.9.1.3.4267 OTU 1 seq prokMSA_id:82016 Clostridiaceae clone: Rs-114 2.30.9.1.3.4269 OTU 1 seq prokMSA_id:82017 Clostridiaceae clone: Rs-L18 2.30.9.1.3.4270 OTU 1 seq prokMSA_id:48084 clone p-1791-c3 2.30.9.1.3.4266 OTU 1 seq prokMSA_id:78067 Clostridiaceae clone:Rs-M86 2.30.9.1.3.4273 OTU 1 seq prokMSA_id:78154 Clostridiaceae clone:Rs-M14 2.30.9.1.3.4271 OTU 1 seq prokMSA_id:73132 clone IIIA-3 2.30.9.1.3.4272 OTU 1 seq prokMSA_id:78224 Clostridiaceae clone:Rs-M34 2.30.9.1.3.4279 OTU 1 seq prokMSA_id:20289 from anoxic bulk soil clone BSV28 2.30.9.1.3.4276 OTU 2 seqs prokMSA_id:20993 rumen 4C0d-13 prokMSA_id:48444 rumen 3C3d-3 2.30.9.1.3.4277 OTU 1 seq prokMSA_id:71706 Elbe River snow isolate Iso15_5 2.30.9.1.3.4284 OTU 1 seq prokMSA_id:45766 rumen 4C0d-7 2.30.9.1.3.4283 OTU 1 seq prokMSA_id:78167 Clostridiaceae clone:Rs-G87 2.30.9.1.3.4281 OTU 1 seq prokMSA_id:36596 clone UASB_brew_B86 2.30.9.1.3.4289 OTU 1 seq prokMSA_id:81319 Clostridiaceae clone: Rs-039 2.30.9.1.3.4292 OTU 1 seq prokMSA_id:22107 adhufec53.25 2.30.9.1.3.4293 OTU 1 seq prokMSA_id:78317 Clostridiaceae clone:Rs-Q01 2.30.9.1.3.4294 OTU 1 seq prokMSA_id:16629 ckncm172-F3M.1E2 2.30.9.1.3.4290 OTU 1 seq prokMSA_id:51306 clone p-2576-9F5 2.30.9.1.3.4298 OTU 1 seq prokMSA_id:83830 Clostridiales oral clone P4PA_66 P1 2.30.9.1.3.4303 OTU 3 seqs prokMSA_id:16016 plautii DSM 4000 prokMSA_id:32020 Clostridium orbiscindens strain DSM 674 prokMSA_id:88785 inhufecA-19 AY328360 2.30.9.1.3.4307 OTU 1 seq prokMSA_id:53789 ckncm197-F4M.1B5 2.30.9.1.3.4313 OTU 2 seqs prokMSA_id:16053 Ruminococcus callidus ATCC 27760 prokMSA_id:16054 Ruminococcus callidus 2.30.9.1.3.4316 OTU 2 seqs prokMSA_id:21306 clone p-241-o5 prokMSA_id:31392 clone p-422-o3 2.30.9.1.3.4315 OTU 1 seq prokMSA_id:78171 Clostridiaceae clone:Rs-N94 2.30.9.1.3.4317 OTU 1 seq prokMSA_id:78174 Clostridiaceae clone:Rs-G06 2.30.9.1.3.4321 OTU 1 seq prokMSA_id:78187 Clostridiaceae clone:Rs-C76 2.30.9.1.3.4326 OTU 1 seq prokMSA_id:19113 Oscillospira guillermondii clone:OSC3 2.30.9.1.3.4327 OTU 3 seqs prokMSA_id:21464 Oscillospira guillermondii clone:OSC5 prokMSA_id:31587 Oscillospira guillermondii clone:OSC1 prokMSA_id:49276 Oscillospira guillermondii clone:OSC4 2.30.9.1.3.4324 OTU 2 seqs prokMSA_id:16021 clone RFN71 prokMSA_id:45828 rumen 3C3d-13 2.30.9.1.3.4329 OTU 5 seqs prokMSA_id:29057 rumen 6C3d-10 prokMSA_id:31936 rumen 6C3d-12 AB034070 prokMSA_id:39644 rumen 6C3d-27 prokMSA_id:44628 rumen 4C28d-19 prokMSA_id:54623 rumen 6C3d-33 AB034073 2.30.9.1.3.4333 OTU 1 seq prokMSA_id:36271 Clostridium methylpentosum strain DSM 5476 2.30.9.1.3.4331 OTU 1 seq prokMSA_id:32842 clone UASB_brew_B84 2.30.9.1.3.4330 OTU 1 seq prokMSA_id:84779 rumen clone BE33 2.30.9.1.3.4334 OTU 1 seq prokMSA_id:77718 Clostridiaceae clone:Rs-N03 2.30.9.1.3.4335 OTU 1 seq prokMSA_id:78375 Clostridiaceae clone:Rs-N86 2.30.9.1.3.4346 OTU 1 seq prokMSA_id:73606 ckncm326-B4-13 2.30.9.1.3.4347 OTU 1 seq prokMSA_id:20780 equine intestinal sp. CL19 clone CL19 2.30.9.1.3.4350 OTU 1 seq prokMSA_id:51616 equine intestinal sp. DL06 clone DL06 2.30.9.1.3.4357 OTU 1 seq prokMSA_id:85903 Lachnospiraceae 19gly4 2.30.9.1.3.4359 OTU 1 seq prokMSA_id:77816 Clostridiaceae clone:Rs-C69 2.30.9.1.3.4362 OTU 1 seq prokMSA_id:45135 ZF3 2.30.9.1.3.4361 OTU 1 seq prokMSA_id:81566 clone KD1-35 2.30.9.1.3.4367 OTU 1 seq prokMSA_id:27355 clone p-1061-a5 2.30.9.1.3.4366 OTU 1 seq prokMSA_id:66186 clone IB-18 2.30.9.1.3.4363 OTU 1 seq prokMSA_id:45063 feedlot manure B54 2.30.9.1.3.4369 OTU 1 seq prokMSA_id:77864 Clostridiaceae clone:Rs-N73 2.30.9.1.3.4368 OTU 1 seq prokMSA_id:23070 equine intestinal sp. ML34 clone ML34 2.30.9.1.3.4373 OTU 1 seq prokMSA_id:25957 clone p-2479-18B5 2.30.9.1.3.4380 OTU 1 seq prokMSA_id:16059 Clostridium cellulosi str. 2.30.9.1.3.4381 OTU 1 seq prokMSA_id:73826 ckncm301-B3-28 2.30.9.1.3.4379 OTU 1 seq prokMSA_id:70077 adhufec81 2.30.9.1.3.4383 OTU 1 seq prokMSA_id:48828 equine intestinal sp. DL19 clone DL19 2.30.9.1.3.4387 OTU 1 seq prokMSA_id:33112 clone p-1719-b3 2.30.9.1.3.4385 OTU 1 seq prokMSA_id:45345 equine intestinal sp. DW18 clone DW18 2.30.9.1.3.4384 OTU 1 seq prokMSA_id:26704 clone p-2573-9F5 2.30.9.1.3.4390 OTU 1 seq prokMSA_id:22352 clone F13 2.30.9.1.3.4395 OTU 1 seq prokMSA_id:70024 CCAJG39 2.30.9.1.3.4400 OTU 1 seq prokMSA_id:16061 clone RC6 2.30.9.1.3.4397 OTU 1 seq prokMSA_id:16060 clone RC5 2.30.9.1.3.4402 OTU 1 seq prokMSA_id:77723 Clostridiaceae clone:Rs-P74 2.30.9.1.3.4404 OTU 1 seq prokMSA_id:16062 clone WCHB1-49 2.30.9.1.3.4409 OTU 1 seq prokMSA_id:16063 clone RFN17 2.30.9.1.3.4407 OTU 1 seq prokMSA_id:33668 clone p-417-o3 2.30.9.1.3.4411 OTU 1 seq prokMSA_id:16017 clone RC15 2.30.9.1.3.4408 OTU 1 seq prokMSA_id:35394 equine intestinal sp. CL26 clone CL26 2.30.9.1.3.4412 OTU 1 seq prokMSA_id:16019 clone RF26 2.30.9.1.3.4413 OTU 1 seq prokMSA_id:22509 equine intestinal sp. DL16 clone DL16 2.30.9.1.3.4415 OTU 1 seq prokMSA_id:78388 Clostridiaceae clone:Rs-K32 2.30.9.1.3.4421 OTU 1 seq prokMSA_id:31495 equine intestinal YT1 2.30.9.1.3.4417 OTU 1 seq prokMSA_id:29313 equine intestinal sp. DL27 clone DL27 2.30.9.1.3.4418 OTU 1 seq prokMSA_id:77804 Clostridiaceae clone:Rs-H18 2.30.9.1.3.4425 OTU 1 seq prokMSA_id:72147 ckncm316-B4-5 2.30.9.1.3.4430 OTU 1 seq prokMSA_id:40419 equine intestinal clone:YT23 2.30.9.1.3.4434 OTU 1 seq prokMSA_id:77987 Clostridiaceae clone:Rs-K11 2.30.9.1.3.4435 OTU 1 seq prokMSA_id:35786 clone p-2498-18B5 2.30.9.1.3.4437 OTU 1 seq prokMSA_id:16072 Clostridium viride str. T2-7 DSM 6836 2.30.9.1.3.4441 OTU 1 seq prokMSA_id:16073 clone WCHB1-54 2.30.9.1.3.4443 OTU 1 seq prokMSA_id:23994 clone p-3567-9F3 2.30.9.1.3.4449 OTU 1 seq prokMSA_id:72970 adhufec58 2.30.9.1.3.4450 OTU 1 seq prokMSA_id:44184 clone p-3778-23G3 2.30.9.1.3.4452 OTU 1 seq prokMSA_id:20899 equine intestinal sp. ML26 clone ML26 2.30.9.1.3.4456 OTU 1 seq prokMSA_id:43950 clone p-1316-a5 2.30.9.1.3.4459 OTU 1 seq prokMSA_id:81634 Clostridiaceae clone: Rs-109 2.30.9.1.3.4457 OTU 1 seq prokMSA_id:31601 Linmingia china 2.30.9.1.3.4461 OTU 1 seq prokMSA_id:66188 clone IA-24 2.30.9.1.3.4465 OTU 2 seqs prokMSA_id:33321 rumen 5C0d-6 prokMSA_id:33958 rumen 5C0d-7 AB034040 2.30.9.1.3.4469 OTU 1 seq prokMSA_id:25054 clone p-1082-a5 2.30.9.1.3.4468 OTU 1 seq prokMSA_id:19757 equine intestinal sp. DW04 clone DW04 2.30.9.1.3.4474 OTU 1 seq prokMSA_id:36670 CCAJG148 2.30.9.1.3.4473 OTU 1 seq prokMSA_id:21784 rumen 3C0d-5 2.30.9.1.3.4471 OTU 1 seq prokMSA_id:81882 Clostridiaceae clone: Rs-058 2.30.9.1.3.4475 OTU 1 seq prokMSA_id:78184 Clostridiaceae clone:Rs-N02 2.30.9.1.3.4478 OTU 1 seq prokMSA_id:34412 clone p-956-s962-5 2.30.9.1.3.4476 OTU 1 seq prokMSA_id:21232 clone p-2484-18B5 2.30.9.1.3.4484 OTU 1 seq prokMSA_id:31732 equine intestinal sp. DL34 clone DL34 2.30.9.1.3.4481 OTU 1 seq prokMSA_id:16559 clone p-1617-c5 2.30.9.1.3.4482 OTU 1 seq prokMSA_id:45569 rumen 3C0d-14 2.30.9.1.3.4489 OTU 1 seq prokMSA_id:30067 clone p-2506-18B5 2.30.9.1.3.4485 OTU 1 seq prokMSA_id:41287 clone p-1651-c5 2.30.9.1.3.4494 OTU 1 seq prokMSA_id:52759 clone p-4067-6Wa3 2.30.9.1.3.4490 OTU 1 seq prokMSA_id:20372 equine intestinal clone:YT25 2.30.9.1.3.4491 OTU 1 seq prokMSA_id:46657 ckncm325-B3-50 2.30.9.1.3.4493 OTU 1 seq prokMSA_id:52755 clone HuCB2 2.30.9.1.3.4496 OTU 1 seq prokMSA_id:42993 CCAJG166 2.30.9.1.3.4497 OTU 1 seq prokMSA_id:77671 Clostridiaceae clone:Rs-N16 2.30.9.1.3.4499 OTU 1 seq prokMSA_id:35154 clone p-3051-SwA5 2.30.9.1.3.4495 OTU 1 seq prokMSA_id:50218 clone p-206-o5 2.30.9.1.3.4500 OTU 4 seqs prokMSA_id:16076 Ruminococcus bromii prokMSA_id:23588 clone p-2452-18B5 prokMSA_id:42426 adhufec21 AF132247 prokMSA_id:61082 clone cadhufec014h7 AF530317 2.30.9.1.3.4504 OTU 1 seq prokMSA_id:42379 rumen 5C0d-16 2.30.9.1.3.4509 OTU 1 seq prokMSA_id:16649 clone p-812-a5 2.30.9.1.3.4507 OTU 2 seqs prokMSA_id:77761 Clostridiaceae clone:Rs-N21 prokMSA_id:81387 Clostridiaceae clone: Rs-121 AB100491 2.30.9.1.3.4505 OTU 1 seq prokMSA_id:33345 rumen 4C0d-6 2.30.9.1.3.4513 OTU 1 seq prokMSA_id:25396 clone UASB_brew_B23 2.30.9.1.3.4511 OTU 1 seq prokMSA_id:73575 ckncm314-B7-17 2.30.9.1.3.4512 OTU 1 seq prokMSA_id:28258 clone UASB_brew_B25 2.30.9.1.3.4510 OTU 1 seq prokMSA_id:77781 Clostridiaceae clone:Rs-Q53 2.30.9.1.3.4514 OTU 1 seq prokMSA_id:77791 Clostridiaceae clone:Rs-B34 2.30.9.1.3.4522 OTU 1 seq prokMSA_id:74798 adhufec311 2.30.9.1.3.4524 OTU 1 seq prokMSA_id:81110 Clostridiaceae clone: Rs-093 2.30.9.1.3.4528 OTU 1 seq prokMSA_id:16729 clone p-2428-55G5 2.30.9.1.3.4533 OTU 1 seq prokMSA_id:77897 Clostridiaceae clone:Rs-N06 2.30.9.1.3.4538 OTU 6 seqs prokMSA_id:26836 clone p-2423-55G5 prokMSA_id:28428 clone p-2557-9F5 prokMSA_id:31395 Butyrate-producing L2-6 prokMSA_id:35563 clone HuCA11 prokMSA_id:40793 clone HuCB29 prokMSA_id:72568 adhufec113 2.30.9.1.3.4537 OTU 2 seqs prokMSA_id:26264 clone p-1637-c5 prokMSA_id:31384 clone p-839-a5 2.30.9.1.3.4535 OTU 8 seqs prokMSA_id:24554 ckncm300-B2-4 prokMSA_id:26738 ckncm297-B1-1 prokMSA_id:36483 ckncm309-B3-39 prokMSA_id:69800 ckncm310-B6-79 prokMSA_id:71012 ckncm308-B6-4 prokMSA_id:73168 ckncm307-B-6-40 prokMSA_id:73368 ckncm298-B3-17 prokMSA_id:73521 ckncm302-B3-11 2.30.9.1.3.4539 OTU 1 seq prokMSA_id:78294 Clostridiaceae clone:Rs-C61 2.30.9.1.3.4540 OTU 1 seq prokMSA_id:78368 Clostridiaceae clone:Rs-M18 2.30.9.1.3.4541 OTU 2 seqs prokMSA_id:32948 adhufec296 prokMSA_id:71027 clone p-900-a5 2.30.9.1.3.4542 OTU 1 seq prokMSA_id:31973 clone HuCB24 2.30.9.1.3.4548 OTU 1 seq prokMSA_id:78376 Clostridiaceae clone:Rs-Q69 2.30.9.1.3.4545 OTU 1 seq prokMSA_id:40798 clone p-2560-9F5 2.30.9.1.3.4544 OTU 1 seq prokMSA_id:85658 rumen clone BF39 2.30.9.1.3.4550 OTU 1 seq prokMSA_id:45365 clone p-320-a3 2.30.9.1.3.4557 OTU 2 seqs prokMSA_id:16037 clone RCP6 prokMSA_id:26324 rumen 4C0d-11 2.30.9.1.3.4558 OTU 3 seqs prokMSA_id:16018 clone RF7 prokMSA_id:16029 clone RFN7 prokMSA_id:17907 rumen 5C0d-9 AB034042 2.30.9.1.3.4559 OTU 1 seq prokMSA_id:85153 rumen clone BF30 2.30.9.1.3.4564 OTU 2 seqs prokMSA_id:29607 CCAJG31 prokMSA_id:70286 CCAJG1 2.30.9.1.3.4567 OTU 7 seqs prokMSA_id:18308 clone p-2617-9F5 prokMSA_id:19049 ckncm312-B6-5 prokMSA_id:21362 clone HuCB5 prokMSA_id:46691 clone p-2814-24E5 prokMSA_id:49003 clone p-2571-9F5 prokMSA_id:51893 CB25 prokMSA_id:52894 clone p-3198-SwA-3 2.30.9.1.3.4566 OTU 1 seq prokMSA_id:29413 clone p-2657-65A5 2.30.9.1.3.4563 OTU 6 seqs prokMSA_id:17499 clone p-2203-s959-3 prokMSA_id:18520 clone p-1720-b3 prokMSA_id:37047 clone p-1706-b3 prokMSA_id:37658 clone p-1721-b3 prokMSA_id:39948 clone p-366-a3 prokMSA_id:45687 clone p-2840-6C5 2.30.9.1.3.4570 OTU 6 seqs prokMSA_id:16652 clone HuCB7 prokMSA_id:27791 clone p-2053-s959-5 prokMSA_id:61046 clone cadhufec18c11sav AF530352 prokMSA_id:61076 clone cadhufec121h7 AF530315 prokMSA_id:61094 clone cadhufec007h7 AF530295 prokMSA_id:92937 clone REC6M_71 AY343231 2.30.9.1.3.4568 OTU 2 seqs prokMSA_id:16078 clone RFN10 prokMSA_id:16079 clone RFN63 2.30.9.1.3.4571 OTU 14 seqs prokMSA_id:16080 Fusobacterium prausnitzii ATCC 27766 prokMSA_id:18361 Butyrate-producing A2-165 prokMSA_id:22018 clone HuCA10 prokMSA_id:27857 adhufec218 AF132246 prokMSA_id:27866 Fusobacterium prausnitzii strain ATCC 27768 prokMSA_id:34145 ckncm315-B3-32 prokMSA_id:51328 clone p-5459-2Wb5 AF371947 prokMSA_id:53461 clone p-1749-b3 prokMSA_id:71071 ckncm299-B6-29 prokMSA_id:72195 ckncm303-B3-1 prokMSA_id:72853 ckncm311-B3-45 prokMSA_id:72938 ckncm306-B3-19 prokMSA_id:73770 ckncm304-B3-9 prokMSA_id:74119 clone HuCA25 2.30.9.1.3.4572 OTU 2 seqs prokMSA_id:77443 A2 prokMSA_id:77507 A29-1 2.30.9.1.3.4582 OTU 6 seqs prokMSA_id:23250 clone p-2628-9F5 prokMSA_id:27984 clone p-882-a5 prokMSA_id:34464 clone p-2215-s959-3 prokMSA_id:44399 clone p-2600-9F5 prokMSA_id:45610 clone p-2179-s959-3 prokMSA_id:68839 clone p-1497-b5 AF371789 2.30.9.1.3.4581 OTU 2 seqs prokMSA_id:46910 clone p-2239-s959-3 prokMSA_id:49817 clone p-594-a5 2.30.9.1.3.4585 OTU 11 seqs prokMSA_id:16025 Ruminococcus flavefaciens str. C94 ATCC 19208 prokMSA_id:16035 Ruminococcus flavefaciens str. C94 ATCC 19208 prokMSA_id:16038 clone RFN88 prokMSA_id:16039 Ruminococcus flavefaciens str. FD-1 prokMSA_id:16064 Ruminococcus flavefaciens str. C94 NCFB 2213 prokMSA_id:16065 Ruminococcus flavefaciens str. Y1 prokMSA_id:16066 Ruminococcus flavefaciens str. AR72 prokMSA_id:16068 Ruminococcus flavefaciens str. 007; LRC017 prokMSA_id:16069 Ruminococcus flavefaciens str. 4; LRC083 prokMSA_id:16070 Ruminococcus flavefaciens str. 17 prokMSA_id:31080 Ruminococcus flavefaciens strain LP9155 AF104836 2.30.9.1.3.4583 OTU 2 seqs prokMSA_id:16058 Anaerofilum agile str. F DSM 4272 prokMSA_id:16081 Anaerofilum pentosovorans str. Fae DSM 7168 2.30.9.1.3.4591 OTU 2 seqs prokMSA_id:39555 rumen 4C28d-4 AB034125 prokMSA_id:46835 clone p-953-s962-5 2.30.9.1.3.4592 OTU 2 seqs prokMSA_id:16041 Ruminococcus flavefaciens str. LP-R1-Adx prokMSA_id:16042 Ruminococcus flavefaciens str. LP-C14-Adx 2.30.9.1.3.4594 OTU 1 seq prokMSA_id:44151 clone p-1487-b5 2.30.9.1.3.4593 OTU 1 seq prokMSA_id:50712 clone p-5014-2Wa5 2.30.9.1.3.4596 OTU 1 seq prokMSA_id:45893 clone p-4157-6Wa5 2.30.9.1.3.4601 OTU 5 seqs prokMSA_id:16048 Ruminococcus albus str. 7 ATCC 27210 prokMSA_id:16049 Ruminococcus albus str. AR67 prokMSA_id:16052 Ruminococcus albus str. OR108 prokMSA_id:16074 Ruminococcus albus prokMSA_id:16075 Ruminococcus albus str. F-40 2.30.9.1.3.4602 OTU 1 seq prokMSA_id:42480 rumen 3C0d-15 2.30.9.1.3.4604 OTU 1 seq prokMSA_id:19080 clone p-1510-b5 2.30.9.1.3.4603 OTU 8 seqs prokMSA_id:46933 clone p-2559-9F5 prokMSA_id:81198 Faecalibacterium prausnitzii clone 1-88 prokMSA_id:81552 Faecalibacterium prausnitzii clone 1-84 prokMSA_id:82053 Faecalibacterium prausnitzii clone 1-79 prokMSA_id:92157 clone REC1M_12 AY343144 prokMSA_id:92569 clone REC1M_20 AY343151 prokMSA_id:92881 clone REC1M_33 AY343145 prokMSA_id:93090 clone REC6M_63 AY343221 2.30.9.1.3.4611 OTU 2 seqs prokMSA_id:22844 clone p-641-a5 prokMSA_id:47737 clone p-886-a5 2.30.9.1.3.4613 OTU 4 seqs prokMSA_id:40552 rumen 3C0d-3 AB034003 prokMSA_id:77617 Clostridiaceae clone:Rs-P37 prokMSA_id:78083 Clostridiaceae clone:Rs-M87 prokMSA_id:82143 Clostridiaceae clone: Rs-L03 2.30.9.1.3.4619 OTU 1 seq prokMSA_id:20765 clone p-3275-A42 2.30.9.1.3.4618 OTU 2 seqs prokMSA_id:16043 Ruminococcus flavefaciens str. C52 ATCC 49949 prokMSA_id:44827 clone p-421-o3 2.30.9.1.3.4620 OTU 1 seq prokMSA_id:51722 clone p-1877-s962-3 2.30.9.1.3.4623 OTU 1 seq prokMSA_id:72987 clone HuCA1 2.30.9.1.3.4624 OTU 1 seq prokMSA_id:21299 equine intestinal sp. MW07 clone MW07 2.30.9.1.3.4626 OTU 1 seq prokMSA_id:16023 str. ASF 500 2.30.9.1.3.4627 OTU 1 seq prokMSA_id:78007 Clostridiaceae clone:Rs-A13 2.30.9.1.3.4630 OTU 1 seq prokMSA_id:17630 equine intestinal sp. ML03 clone ML03 2.30.9.1.3.4628 OTU 1 seq prokMSA_id:30534 Hydrogen production community clone HPB-G1-15 2.30.9.1.3.4632 OTU 1 seq prokMSA_id:33877 CCAJG114 2.30.9.1.3.4633 OTU 1 seq prokMSA_id:24921 ckncm324-B6-45 2.30.9.1.3.4634 OTU 1 seq prokMSA_id:16027 clone RF29 2.30.9.1.3.4639 OTU 1 seq prokMSA_id:16030 clone vadinHA42 2.30.9.1.3.4641 OTU 1 seq prokMSA_id:39700 Papillibacter cinnaminovorans 2.30.9.1.3.4637 OTU 1 seq prokMSA_id:81967 Clostridiaceae clone: Rs-088 2.30.9.1.3.4640 OTU 1 seq prokMSA_id:16031 clone BC09 2.30.9.1.3.4644 OTU 1 seq prokMSA_id:16033 clone CA26 2.30.9.1.3.4645 OTU 1 seq prokMSA_id:40164 clone p-1986-959-5 2.30.9.1.3.4646 OTU 1 seq prokMSA_id:71858 ckncm321-B7-11 2.30.9.1.3.4648 OTU 1 seq prokMSA_id:16036 clone RC37 2.30.9.1.4 STR.16SX_SUBGROUP 6 seqs 2.30.9.1.4.4161 OTU 1 seq prokMSA_id:16083 clone WCHA1-53 2.30.9.1.4.4176 OTU 1 seq prokMSA_id:16087 clone Sva0855 2.30.9.1.4.4320 OTU 2 seqs prokMSA_id:16082 str. 16SX-2 prokMSA_id:16085 str. 16SX-1 2.30.9.1.4.4399 OTU 1 seq prokMSA_id:43679 from anoxic bulk soil clone BSV87 2.30.9.1.4.4410 OTU 1 seq prokMSA_id:84131 clone:ALU10 2.30.9.2 C.BOTULINUM_GROUP 275 seqs 2.30.9.2.1 CCS.OWENSENSIS_SUBGROUP 16 seqs 2.30.9.2.1.4178 OTU 1 seq prokMSA_id:16088 Caldicellulosiruptor owensensis str. OL ATCC 700167 2.30.9.2.1.4207 OTU 1 seq prokMSA_id:16091 str. SP83 2.30.9.2.1.4213 OTU 2 seqs prokMSA_id:16094 Caldicellulosiruptor lactoaceticus str. 6A DSM 9545 . X82842 prokMSA_id:16095 Caldicellulosiruptor kristjanssonii str. I77R1B 2.30.9.2.1.4338 OTU 2 seqs prokMSA_id:16103 "Anaerocellum thermophilum" str. Z-1203 ? prokMSA_id:16105 "Anaerocellum thermophilum" str. Z-1203 ? 2.30.9.2.1.4336 OTU 4 seqs prokMSA_id:16089 str. Rt8B.4 prokMSA_id:16092 str. Ok9.B1 prokMSA_id:16096 str. Rt8.B7 prokMSA_id:16102 str. Rt8. B15 2.30.9.2.1.4543 OTU 2 seqs prokMSA_id:16098 Caldicellulosiruptor saccharolyticus str. Tp8T.6.3.3.1 ATCC prokMSA_id:16099 str. COMP.B1 2.30.9.2.1.4553 OTU 2 seqs prokMSA_id:16093 Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436 prokMSA_id:16100 Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436 2.30.9.2.1.4562 OTU 2 seqs prokMSA_id:16101 str. Wai35 B1 prokMSA_id:16104 str. RI2.B1 2.30.9.2.2 OX.PFENNIGII 2 seqs 2.30.9.2.2.4472 OTU 1 seq prokMSA_id:49771 from anoxic bulk soil clone BSV07 2.30.9.2.2.4642 OTU 1 seq prokMSA_id:16106 Oxobacter pfennigii DSM 3222 2.30.9.2.3 CLR.FERVIDUS_SUBGROUP 15 seqs 2.30.9.2.3.4163 OTU 1 seq prokMSA_id:16110 Caloramator coolhaasii str. Z 2.30.9.2.3.4287 OTU 1 seq prokMSA_id:34407 Caloramator viterbiensis 2.30.9.2.3.4306 OTU 1 seq prokMSA_id:86415 Clostridiaceae clone PD-UASB-4 2.30.9.2.3.4314 OTU 2 seqs prokMSA_id:45031 from anoxic bulk soil clone BSV54 prokMSA_id:46414 from anoxic bulk soil clone BSV34 2.30.9.2.3.4382 OTU 5 seqs prokMSA_id:16107 Thermobrachium celer str. JW/YL-NZ35 . X99238 prokMSA_id:16108 Caloramator indicus str. IndiB4 ACM 3982 prokMSA_id:38722 Caloramator sp. JW/JH-1 clone JH-5long AF286863 prokMSA_id:64744 Caloramator uzoniensis AY102936 prokMSA_id:68459 Caloramator uzoniensis 2.30.9.2.3.4431 OTU 1 seq prokMSA_id:32182 Clostridium cylindrosporum strain DSM 605 2.30.9.2.3.4597 OTU 2 seqs prokMSA_id:16112 unnamed organism prokMSA_id:65710 soil clone C06 2.30.9.2.3.4599 OTU 1 seq prokMSA_id:36208 from anoxic bulk soil clone BSV83 2.30.9.2.3.4647 OTU 1 seq prokMSA_id:16109 Caloramator proteolyticus str. Uruguayensis 2.30.9.2.5 C.THERMOBUTYRICUM_SUBGROUP 16 seqs 2.30.9.2.5.4170 OTU 1 seq prokMSA_id:66191 clone IA-23 2.30.9.2.5.4325 OTU 1 seq prokMSA_id:78194 Clostridiaceae clone:Rs-K21 2.30.9.2.5.4341 OTU 2 seqs prokMSA_id:23882 Clostridium haemolyticum strain DSM 5565 prokMSA_id:28961 Clostridium novyi strain:ATCC27323 2.30.9.2.5.4392 OTU 1 seq prokMSA_id:16130 clone HB69 2.30.9.2.5.4396 OTU 1 seq prokMSA_id:16131 clone HA16 2.30.9.2.5.4517 OTU 1 seq prokMSA_id:23003 clone p-2513-18B5 2.30.9.2.5.4526 OTU 1 seq prokMSA_id:59913 spirochete clone ccslm210 2.30.9.2.5.4587 OTU 1 seq prokMSA_id:16125 Clostridium botulinum str. 468 toxin C 2.30.9.2.5.4607 OTU 7 seqs prokMSA_id:16120 Clostridium homopropionicum DSM 5847 prokMSA_id:16121 Clostridium sp. LMG 16094 prokMSA_id:16123 Clostridium novyi str. A NCTC 538 prokMSA_id:16124 Clostridium novyi str. 151 L.S. McClung ATCC 17861 prokMSA_id:16127 Clostridium botulinum str. 2023 ATCC 17851. L37591 prokMSA_id:19010 Clostridium novyi strain:ATCC19402 AB041866 prokMSA_id:29673 Clostridium novyi AB045606 2.30.9.2.6 C.BOTULINUM_SUBGROUP 21 seqs 2.30.9.2.6.4193 OTU 11 seqs prokMSA_id:16132 Clostridium putrificum str. 2318 ATCC 25784 prokMSA_id:16133 Clostridium botulinum str. 8G ATCC 25764. L37593 prokMSA_id:16139 Clostridium botulinum str. KYTO-F. X73844 prokMSA_id:16140 Clostridium sporogenes str. 388 ATCC 3584 prokMSA_id:16141 Clostridium botulinum str. LP1284. AF105402 prokMSA_id:16143 Clostridium botulinum NCTC 7272. X68185 prokMSA_id:16147 Clostridium botulinum str. A2 VPI 14856. L37586 prokMSA_id:16148 Clostridium botulinum ATCC 25763 prokMSA_id:16149 Clostridium botulinum str. Langeland NCTC 10281. X68172 prokMSA_id:16154 Clostridium botulinum NCTC 7273. X68186 prokMSA_id:90396 Clostridium sp. MD4 AY321658 2.30.9.2.6.4197 OTU 1 seq prokMSA_id:34959 Clostridium acidisoli strain CK74 2.30.9.2.6.4274 OTU 1 seq prokMSA_id:32657 clone RFLP 18E 2.30.9.2.6.4318 OTU 1 seq prokMSA_id:16769 anoxSCC-25 2.30.9.2.6.4343 OTU 1 seq prokMSA_id:31072 from anoxic bulk soil clone BSV78 2.30.9.2.6.4414 OTU 1 seq prokMSA_id:16138 Clostridium magnum DSM 2767 2.30.9.2.6.4423 OTU 1 seq prokMSA_id:16142 Clostridium pasteurianum ATCC 6013 2.30.9.2.6.4427 OTU 1 seq prokMSA_id:16144 Clostridium tyrobutyricum NIZO 51 2.30.9.2.6.4436 OTU 1 seq prokMSA_id:16145 clone SJA-65 2.30.9.2.6.4506 OTU 1 seq prokMSA_id:17161 Clostridium autoethanogenum strain DSM 10061 2.30.9.2.6.4555 OTU 1 seq prokMSA_id:16153 Clostridium tyrobutyricum ATCC 25755 2.30.9.2.7 C.SCATOLOGENES 3 seqs 2.30.9.2.7.4532 OTU 3 seqs prokMSA_id:20034 Clostridium scatologenes Y18813 prokMSA_id:64232 Clostridium scatologenes strain FP AJ427628 prokMSA_id:77703 Clostridium carboxidivorans 2.30.9.2.8 C.COCHLEARIUM_SUBGROUP 23 seqs 2.30.9.2.8.4174 OTU 2 seqs prokMSA_id:16157 Clostridium tetanomorphum str. H1 NCIMB 11547. S46737 prokMSA_id:16159 Clostridium tetanomorphum str. H1 NCIMB 11547 2.30.9.2.8.4204 OTU 1 seq prokMSA_id:16163 Clostridium sp. str. RPec1 2.30.9.2.8.4206 OTU 1 seq prokMSA_id:16164 Clostridium acetireducens str. 30A DSM 7310 2.30.9.2.8.4229 OTU 3 seqs prokMSA_id:79176 Clostridium tetani E88 section 1 of 10 of the complete genom prokMSA_id:79236 Clostridium tetani E88 section 2 of 10 of the complete genom prokMSA_id:79542 Clostridium tetani E88 section 10 of 10 of the complete geno 2.30.9.2.8.4296 OTU 1 seq prokMSA_id:71518 Clostridiaceae str. A4d 2.30.9.2.8.4302 OTU 1 seq prokMSA_id:49113 clone GOUTA13 2.30.9.2.8.4312 OTU 2 seqs prokMSA_id:21985 clone HuCA3 prokMSA_id:44983 clone HuCA6 2.30.9.2.8.4323 OTU 2 seqs prokMSA_id:34479 Clostridium sp. T7 AF281142 prokMSA_id:44328 Clostridium sp. strain ccug 42741 2.30.9.2.8.4378 OTU 1 seq prokMSA_id:29102 anoxSCC-33 2.30.9.2.8.4419 OTU 2 seqs prokMSA_id:29799 anoxSCC-44 prokMSA_id:45660 anoxSCC-27 AJ387882 2.30.9.2.8.4422 OTU 1 seq prokMSA_id:30766 from anoxic bulk soil clone BSV50 2.30.9.2.8.4432 OTU 1 seq prokMSA_id:33242 clone p-4524-4Wb3 2.30.9.2.8.4470 OTU 1 seq prokMSA_id:16166 Clostridium tetani NCTC 279 2.30.9.2.8.4579 OTU 1 seq prokMSA_id:85102 rumen clone BS6 2.30.9.2.8.4616 OTU 3 seqs prokMSA_id:16158 clone RC30 prokMSA_id:27711 rumen 4C0d-10 prokMSA_id:83170 rumen clone BS7 2.30.9.2.9 C.SUBTERMINALE_SUBGROUP 14 seqs 2.30.9.2.9.4154 OTU 1 seq prokMSA_id:79436 Clostridium tunisiense 2.30.9.2.9.4177 OTU 1 seq prokMSA_id:31319 Clostridium subterminale isolate DSM 2636 2.30.9.2.9.4259 OTU 1 seq prokMSA_id:16180 clone RB15 2.30.9.2.9.4275 OTU 1 seq prokMSA_id:16181 Clostridium argentinense ATCC 27322 2.30.9.2.9.4340 OTU 2 seqs prokMSA_id:16176 Clostridium PENDANT-16 prokMSA_id:16177 Clostridium PENDANT-1 2.30.9.2.9.4348 OTU 1 seq prokMSA_id:27541 anoxSCC-7 2.30.9.2.9.4525 OTU 1 seq prokMSA_id:78350 clone:Rs-Q18 2.30.9.2.9.4530 OTU 1 seq prokMSA_id:46741 clone UASB_brew_B68 2.30.9.2.9.4575 OTU 5 seqs prokMSA_id:16178 Clostridium argentinense ATCC 27322 prokMSA_id:16179 Clostridium argentinense str. 113/30 toxin G prokMSA_id:16182 Clostridium subterminale NCIMB 10746 prokMSA_id:16183 Clostridium sp. DSM 1975 prokMSA_id:39409 Clostridium subterminale isolate DSM 758 2.30.9.2.10 C.ACETOBUTYLICUM_SUBGROUP 11 seqs 2.30.9.2.10.4190 OTU 1 seq prokMSA_id:70408 RSb33 2.30.9.2.10.4264 OTU 1 seq prokMSA_id:16185 Clostridium collagenovorans DSM 3089 2.30.9.2.10.4439 OTU 1 seq prokMSA_id:16190 Clostridium acetobutylicum NCDO 1712 2.30.9.2.10.4551 OTU 2 seqs prokMSA_id:16187 Clostridium acetobutylicum ATCC 824 prokMSA_id:72289 C.acetobutylicum ATCC 824 T 2.30.9.2.10.4574 OTU 6 seqs prokMSA_id:16189 Clostridium acetobutylicum ATCC 824 prokMSA_id:16191 Clostridium acetobutylicum DSM 1731 prokMSA_id:18375 Clostridium felsineum NCIMB 10690 AF270501 prokMSA_id:20598 Clostridium felsineum DSM 794 AF270502 prokMSA_id:46897 Clostridium roseum strain DSM 6424 prokMSA_id:47394 Clostridium acetobutylicum ATCC824 complete genome 2.30.9.2.11 C.BARATI_SUBGROUP 154 seqs 2.30.9.2.11.1 C.CADAVERIS_SUBGROUP 7 seqs 2.30.9.2.11.1.4309 OTU 6 seqs prokMSA_id:16192 unnamed organism prokMSA_id:16193 unnamed organism prokMSA_id:16194 unnamed organism prokMSA_id:34378 clone S25-6 prokMSA_id:70665 of a segment E11861 prokMSA_id:72493 of novel Segmented filamentous BAL01 E11886 2.30.9.2.11.1.4448 OTU 1 seq prokMSA_id:16195 unnamed organism 2.30.9.2.11.2 C.ALGIDICARNIS_SUBGROUP 3 seqs 2.30.9.2.11.2.4211 OTU 1 seq prokMSA_id:81682 Clostridium fallax isolate VA24831_02 2.30.9.2.11.2.4393 OTU 2 seqs prokMSA_id:16199 Anaerobacter polyendosporus prokMSA_id:42703 Anaerobacter polyendosporus strain DSM 5272 2.30.9.2.11.3 C.PERFRINGENS_SUBGROUP 26 seqs 2.30.9.2.11.3.4337 OTU 3 seqs prokMSA_id:16201 Sarcina ventriculi DSM 286 prokMSA_id:16202 Sarcina ventriculi prokMSA_id:73781 clone p-37-a5 AF371846 2.30.9.2.11.3.4391 OTU 1 seq prokMSA_id:16203 Sarcina ventriculi str. VPI-s-7-31 GIFU 7886 2.30.9.2.11.3.4403 OTU 1 seq prokMSA_id:16207 clone D1-11 2.30.9.2.11.3.4576 OTU 21 seqs prokMSA_id:16206 Clostridium perfringens str. CPN50 =rrnB operon H3 fragment prokMSA_id:16210 Clostridium perfringens str. antibioticNitrofurantoin-resist prokMSA_id:18408 Clostridium sp. AB&J prokMSA_id:26184 clone p-4636-2Wa2 prokMSA_id:46789 Clostridium perfringens complete genome NC_003366 prokMSA_id:52947 Clostridium perfringens operon 23S 5S genes complete sequenc prokMSA_id:53902 Clostridium perfringens rrnE operon 23S 5S genes complete se prokMSA_id:54029 Clostridium perfringens rrnD operon 23S 5S genes complete se prokMSA_id:54412 Clostridium perfringens rrnC operon 23S 5S genes complete se prokMSA_id:54675 Clostridium perfringens rrnB operon 23S 5S genes complete se prokMSA_id:54809 Clostridium perfringens rrnF operon 23S 5S genes complete se prokMSA_id:54834 Clostridium perfringens rrnG operon 23S 5S genes complete se prokMSA_id:63982 Clostridium perfringens str. 13 complete genome section 10/1 prokMSA_id:63983 Clostridium perfringens str. 13 complete genome section 9/10 prokMSA_id:68917 Clostridium perfringens rrnH operon tRNA-Ile 23S 5S genes co prokMSA_id:68918 Clostridium perfringens rrnI operon tRNA-Ile 23S 5S genes co prokMSA_id:68919 Clostridium perfringens rrnJ operon tRNA-Ile 23S 5S genes co prokMSA_id:70420 OI1612 prokMSA_id:73346 Clostridium perfringens prokMSA_id:75452 Swine manure 37-3 prokMSA_id:77120 Swine manure 37-4 2.30.9.2.11.4 C.AURANTIBUTYRICUM_SUBGROUP 49 seqs 2.30.9.2.11.4.4153 OTU 1 seq prokMSA_id:16227 Clostridium vincentii 2.30.9.2.11.4.4172 OTU 1 seq prokMSA_id:40062 multiforme 2.30.9.2.11.4.4175 OTU 1 seq prokMSA_id:41948 clone p-2106-s959-2 2.30.9.2.11.4.4208 OTU 2 seqs prokMSA_id:16239 Clostridium gasigenes DSM 12272 prokMSA_id:16240 Clostridium gasigenes str. R26. AF143692 2.30.9.2.11.4.4280 OTU 2 seqs prokMSA_id:62683 low G+C Gram-positive clone ML623J-27 prokMSA_id:63829 Bacillus sp. clone ML1228J-10 2.30.9.2.11.4.4304 OTU 1 seq prokMSA_id:62673 low G+C Gram-positive clone ML635J-34 2.30.9.2.11.4.4328 OTU 2 seqs prokMSA_id:27099 RSb8 prokMSA_id:29859 RSb3 2.30.9.2.11.4.4339 OTU 6 seqs prokMSA_id:16218 Clostridium septicum ATCC 12464 prokMSA_id:16235 Clostridium chauvoei ATCC 10092 prokMSA_id:35112 clone p-4936-6Wb2 prokMSA_id:37589 Clostridium disporicum strain DSM 5521 Y18176 prokMSA_id:41092 clone p-2117-s959-2 prokMSA_id:70497 Clostridium septicum 2.30.9.2.11.4.4426 OTU 1 seq prokMSA_id:16214 Clostridium quinii DSM 6736 2.30.9.2.11.4.4438 OTU 1 seq prokMSA_id:16219 Clostridium sp. str. WV6 2.30.9.2.11.4.4460 OTU 1 seq prokMSA_id:16220 Clostridium frigidicarnis str. SPL77A 2.30.9.2.11.4.4467 OTU 1 seq prokMSA_id:16230 Clostridium celatum DSM 1785 2.30.9.2.11.4.4516 OTU 1 seq prokMSA_id:47464 clone p-2194-s959-3 2.30.9.2.11.4.4547 OTU 3 seqs prokMSA_id:16225 Clostridium paraputrificum ATCC 25780 prokMSA_id:16228 Clostridium paraputrificum str. M-21 prokMSA_id:16237 Clostridium barati VPI 1586. M59102 2.30.9.2.11.4.4561 OTU 2 seqs prokMSA_id:16216 Clostridium longisporum DSM 8431 prokMSA_id:16223 Clostridium chartatabidum DSM 5482 2.30.9.2.11.4.4590 OTU 1 seq prokMSA_id:25889 Clostridium sartagoformum strain DSM 129 2.30.9.2.11.4.4598 OTU 13 seqs prokMSA_id:16213 Clostridium barati str. 2227 ATCC 27638 prokMSA_id:16215 Clostridium paraputrificum ATCC 25780 prokMSA_id:16217 nitritogenes DSM 3985 prokMSA_id:16232 Clostridium barati ATCC 43756 prokMSA_id:16233 multiforme DSM 20694 prokMSA_id:16234 Clostridium absonum DSM 599 prokMSA_id:16256 Clostridium SP3 str. SP3 prokMSA_id:16276 Clostridium sp. str. RXyl1 prokMSA_id:31869 nitritogenes prokMSA_id:71927 Clostridium butyricum prokMSA_id:74851 budayi prokMSA_id:92509 Clostridium baratii clone D12 AY341243 prokMSA_id:93007 Clostridium baratii clone I11 AY341242 2.30.9.2.11.4.4600 OTU 2 seqs prokMSA_id:30877 from anoxic bulk soil clone BSV62 prokMSA_id:74580 from anoxic bulk soil clone BSV82 2.30.9.2.11.4.4606 OTU 1 seq prokMSA_id:16212 Clostridium aurantibutyricum str. 2038 NCIMB 10659 2.30.9.2.11.4.4609 OTU 2 seqs prokMSA_id:16224 Clostridium cellulovorans DSM 3052 prokMSA_id:16231 Clostridium cellulovorans DSM 3052 2.30.9.2.11.4.4629 OTU 1 seq prokMSA_id:34679 clone p-2171-s959-3 2.30.9.2.11.4.4635 OTU 3 seqs prokMSA_id:16236 Clostridium tertium ATCC 14573 prokMSA_id:33186 Clostridium sp. 75064 AF227826 prokMSA_id:38488 Clostridium tertium strain DSM 2485 Y18174 2.30.9.2.11.5 C.BUTYRICUM_SUBGROUP 69 seqs 2.30.9.2.11.5.4169 OTU 1 seq prokMSA_id:56713 clone cvf70173 2.30.9.2.11.5.4185 OTU 1 seq prokMSA_id:27375 Clostridium uliginosum strain CK55 2.30.9.2.11.5.4191 OTU 1 seq prokMSA_id:49549 Clostridium beijerinckii strain:JCM 7847 2.30.9.2.11.5.4203 OTU 1 seq prokMSA_id:37089 from anoxic bulk soil clone BSV80 2.30.9.2.11.5.4231 OTU 1 seq prokMSA_id:27748 clone HTE5 2.30.9.2.11.5.4257 OTU 1 seq prokMSA_id:20099 equine intestinal sp. DL28 clone DL28 2.30.9.2.11.5.4319 OTU 2 seqs prokMSA_id:16272 clone RFN42 prokMSA_id:16273 clone RFN54 2.30.9.2.11.5.4351 OTU 1 seq prokMSA_id:51473 clone:BCf10-24 2.30.9.2.11.5.4353 OTU 5 seqs prokMSA_id:16242 Clostridium botulinum str. Eklund 202F ATCC 23387. X68170 prokMSA_id:16245 Clostridium botulinum str. 36208 ATCC 9564 prokMSA_id:16246 Clostridium botulinum str. Iwanai. X68171 prokMSA_id:16262 Clostridium botulinum str. Eklund 17B ATCC 25765. X68173 prokMSA_id:88762 Clostridium botulinum strain AIP 355.02 AY303799 2.30.9.2.11.5.4398 OTU 1 seq prokMSA_id:24896 CCAJG161 2.30.9.2.11.5.4462 OTU 1 seq prokMSA_id:43602 anoxSCC-31 2.30.9.2.11.5.4466 OTU 1 seq prokMSA_id:35865 clone p-406-o3 2.30.9.2.11.5.4480 OTU 1 seq prokMSA_id:73000 Clostridium neonatale 2.30.9.2.11.5.4519 OTU 1 seq prokMSA_id:35306 from anoxic bulk soil clone BSV86 2.30.9.2.11.5.4560 OTU 30 seqs prokMSA_id:16243 Clostridium caliptrosporum DSM 5905 prokMSA_id:16248 Clostridium saccharoperbutylacetonicum str. N1-4 ATCC 13564 prokMSA_id:16250 Clostridium beijerinckii NCIMB 9362 prokMSA_id:16258 Clostridium corinoforum DSM 5906 prokMSA_id:16259 Clostridium beijerinckii DSM 791 prokMSA_id:16263 Clostridium beijerinckii NCIMB 8052 prokMSA_id:16264 Clostridium favososporum str. BKM B-1360 DSM 5907 prokMSA_id:16266 Clostridium acetobutylicum NCP 262 prokMSA_id:16268 Clostridium beijerinckii NCIMB 8052 prokMSA_id:16270 Clostridium acetobutylicum NCP 262 prokMSA_id:16271 Clostridium puniceum DSM 2619 prokMSA_id:16275 Clostridium beijerinckii NCIMB 8052 prokMSA_id:16277 Clostridium beijerinckii NCIMB 8052 prokMSA_id:27405 Clostridium roseum strain DSM 51 prokMSA_id:32781 Clostridium beijerinckii strain:JCM 7839 prokMSA_id:34846 Clostridium beijerinckii strain:JCM 7844 prokMSA_id:39254 Clostridium beijerinckii strain:JCM 7845 prokMSA_id:47159 Clostridium beijerinckii strain:JCM 7833 prokMSA_id:59906 low G+C Gram-positive clone ccslm2120 prokMSA_id:67023 Clostridium butyricum strain E5 prokMSA_id:67024 Clostridium butyricum strain DSM 5431 prokMSA_id:67025 Clostridium butyricum strain DSM 5430 prokMSA_id:75278 clone HC-31 prokMSA_id:84677 Clostridium chromoreductans prokMSA_id:96776 Clostridium sp. UsIt101-1 AB114256 prokMSA_id:97280 Clostridium sp. UsIt102-2 AB114257 prokMSA_id:97482 Clostridium sp. UsS102-1 AB114254 prokMSA_id:97998 Clostridium sp. Kas202-1 AB114252 prokMSA_id:98062 Clostridium sp. Usu-S-R3 AB114255 prokMSA_id:98508 Clostridium sp. UsS101-2 AB114253 2.30.9.2.11.5.4589 OTU 6 seqs prokMSA_id:16251 Clostridium kainantoi DSM 523 prokMSA_id:16253 Clostridium butyricum str. strain MW8 prokMSA_id:16255 Clostridium butyricum ATCC 43755 prokMSA_id:19926 Clostridium butyricum strain IBUN 64A prokMSA_id:21382 Clostridium butyricum strain IBUN 125C prokMSA_id:33631 Clostridium butyricum strain IBUN 22A 2.30.9.2.11.5.4610 OTU 14 seqs prokMSA_id:16204 Sarcina maxima str. K66 DSM 316 prokMSA_id:32184 Clostridium putrefaciens prokMSA_id:37683 Clostridium putrifaciens strain DSM 1291 prokMSA_id:41634 Clostridium algidicarnis prokMSA_id:82617 rumen clone BS35 AY244986 prokMSA_id:82860 rumen clone BS31 AY244982 prokMSA_id:82928 rumen clone BS30 AY244981 prokMSA_id:83292 rumen clone BS37 AY244988 prokMSA_id:85204 rumen clone BS33 AY244984 prokMSA_id:85319 rumen clone BS26 AY244977 prokMSA_id:85792 rumen clone BS40 AY244991 prokMSA_id:85888 rumen clone BS27 AY244978 prokMSA_id:86108 rumen clone BS38 AY244989 prokMSA_id:86395 rumen clone BS29 AY244980