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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs1248861          
refSNP ID: rs1248861
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:87/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss1895755 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1248861 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1895755KWOK|OVLP-000925-354389fwd/TA/Tgacagacaccgccccccggccaatggaaaccccccgcccaccaggtctggccaatgagag10/06/0010/10/0387Genomic99 %
ss2526717SC_JCM|AC026103.12_39813fwd/TA/Tgacagacaccgccccccggccaatggaaaccccccgcccaccaggtctggccaatgagag11/03/0010/10/0392Genomicunknown
ss3276613TSC-CSHL|TSC1394181rev/BA/Tctctcattggccagacctggtgggcggggggtttccattggccggggggcggtgtctgtc09/20/0110/10/03104Genomicunknown
ss6185520SC_JCM|NT_022459.10_994070fwd/TA/Tgacagacaccgccccccggccaatggaaaccccccgcccaccaggtctggccaatgagag01/10/0310/10/03111Genomicunknown
ss11541657WI_SSAHASNP|chr3.NT_022459.12_18689886rev/BA/Tctctcattggccagacctggtgggcggggggtttccattggccggggggcggtgtctgtc07/03/0310/10/03116Genomicunknown
ss14177783BCM_SSAHASNP|chr3.NT_022459.13_18702736rev/BA/Tctctcattggccagacctggtgggcggggggtttccattggccggggggcggtgtctgtc11/05/0311/22/03119Genomicunknown
ss16944795CSHL-HAPMAP|CSHL-HuAA-200402.chr3.NT_022459.13_18702736rev/BA/Tctctcattggccagacctggtgggcggggggtttccattggccggggggcggtgtctgtc02/17/0403/04/04120Genomicunknown
ss44376590ABI|hCV7553320rev/A/Tctctcattggccagacctggtgggcggggggtttccattggccggggggcggtgtctgtc07/18/0507/18/05126Genomicunknown
ss92174458BCMHGSC_JDW|JWB-1624904rev/A/Tctctcattggccagacctggtgggcggggggtttccattggccggggggcggtgtctgtc02/26/0803/02/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1248861|allelePos=526|totalLen=726|taxid=9606|snpclass=1|alleles='A/T'|mol=Genomic|build=129
 CACCCGCAGA ATGGGGTATC GCGAAATAGT TTCTTCTCCT CCTCCTCCTG CTGGTGGTGC
 AGCCGCGACA GCCCGTCTTC CAGGCAGGGG TTTGGAGCTT GCCTTCCTCT CGGCGCGCAC
 AGCAAGTCCC AGAGCCCGCC GGGGCTGCCC GAGCAGGTGG TGCAGGGATG CCGGGGTGTT
 GGAGAAGGTG CGGGCGAGGG CTGCAAGGAG TGGGTAGGTC ACGGAGGGGA AGGGCTGGGG
 GAGAGGAGGA GCAAGCAAGC AGCACTGCCG CTCGCGCCCG GGGTGTCTCG GGGTCCTGGG
 AGGGGAGGTA GAAGCAGTGG AAGCAGCGCT AGTggcggta gcagcggcag cggcggcggc
 agtggcggct cccggatgct ccggctgcag cggcggctgt ggcggcagcg gcagcggcga
 cggcggcagc TCTACGAAGC ACCAGACACA AGGGCAAGCT CAGAGCGGCG GAGGCCCGCC
 CCCACCCCGG CCAGGGACAG ACACCGCCCC CCGGCCAATG GAAAC
 W
 CCCCCGCCCA CCAGGTCTGG CCAATGAGAG AAGGGGATGG GTGGAGACAA GCGCCGGGAA
 AAACAAACAG GCTTCTCAAG GACCCTTCGG GCAGGAAGAA CTGAAGCCCC CATTCAGCAC
 CCCTGGCGGA TCTTACCTCT TTAGAGATGT CTCGCCCGAA CTTGCAGGCG AGACAACTGC
 CTTCATTAAT CAGCGCTTTG

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs1248861 maps exactly once on NCBI human chromosome 3
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
3NW_001838878.11875364085021401minusTalt_assembly_8HuRefHuRefview525
3NT_022459.141871490585090738minusAref_assemblyreferencereferenceview525
3NW_921751.1944322085754630minusTalt_assembly_1CeleraCeleraview525

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_022459.10 AC023600 AC025551 AC026103.12
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC023600.19 AC132660.7 NC_000003.10 AC025551.5 AC026103.17

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .