Reference SNP(refSNP) Cluster Report: rs35405880

Reference SNP(refSNP) Cluster Report: rs35405880

refSNP ID: rs35405880
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	126/129
Map to Genome Build:	36.3

Allele
Variation Class:	DIP: deletion/insertion polymorphism
RefSNP Alleles:	-/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_005993.4:c.582+1492_582+1493insG
NT_010663.14:g.942041_942042insG

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss40843914 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35405880 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss40843914	ABI\|hCV32840781		fwd/	-/G	ttaataacttagtttactttgctcataaat	ggtggatccatgtttgaatccaggcggttt	07/17/05	07/17/05	126	Genomic			unknown

Fasta sequence (Legend)

 TCCCAGCTAC TCAAGAGGCT GAGGCAGAAG AATCCCTTGA ACCTGGGAGG TGGAGATTGT
 AGTGAACTGA GATTACGCCA CTGCACTCCA GCCTGGGTGA CAGAGCGAGA GTCCATCTCA
 AAAAAAAAAA AAAAAAATTT AACCTATACG TTGATGATTG ATAGATCATC AGTGATTAAT
 TAACTGTGAT TAATAATCAT TGAATTCTCC TTCATGAGGC TGTTGACAAT TCTTACCCTC
 GTTTAACCGA GAAGGCAACA GGCATAAAAA TTAATAACTT AGTTTACTTT GCTCATAAAT
 N
 GGTGGATCCA TGTTTGAATC CAGGCGGTTT ATCTGGAGTC TGTGCTCTTC ATCAGGGCTC
 AGCATTGCCC CATGACCTGC TGTTCTGAGT CCTTTTTACC CTCAGCAACA CGTTCTTAGT
 GTCTTACGAT GTCAGAAGGT GTCCCCCTCA TAATCGTTAA GGGAAAAGGT ACTCCATTGT
 AATCTAATTT AAAATTCTCT CTGATAGATG GATGTTTTGT TTGTTCTTGT TTTGTTACGT
 TAGAGGTAGT GTGGTGATGG GCTGGGTGCG GTGGCTCACG CCTGTAATCC CAGCACTCTG

GeneView

GeneView via analysis of contig annotation: TBCD tubulin folding cofactor D

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_010663->NM_005993

function

HuRef

NW_001838459->NM_005993

function

Celera

NW_926918->NM_005993

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_010663->NM_005993->NP_005984	942041:942042	forward	intron

HuRef	NW_001838459->NM_005993->NP_005984	974834:974835	forward	intron

Celera	NW_926918->NM_005993->NP_005984	17828152:17828153	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs35405880 maps exactly once on NCBI human chromosome 17

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
17	NW_001838459.1	974834^974835	76127905^76127906	plus	-	alt_assembly_8	HuRef	HuRef	view	300..300
17	NW_926918.1	17828152^17828153	77322751^77322752	plus	-	alt_assembly_1	Celera	Celera	view	300..300
17	NT_010663.14	942041^942042	78321223^78321224	plus	-	ref_assembly	reference	reference	view	300..300

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
GenBank HTGS Finished:
AC068014.16 NC_000017.9

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .