BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PG0054
(392 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34539935|ref|NP_904414.1| outer membrane efflux protein ... 712 0.0
gi|53713382|ref|YP_099374.1| outer membrane efflux protein ... 417 e-115
gi|60681634|ref|YP_211778.1| hypothetical protein BF2155 [B... 415 e-114
gi|150008238|ref|YP_001302981.1| hypothetical protein BDI_1... 201 9e-50
gi|154492603|ref|ZP_02032229.1| hypothetical protein PARMER... 197 7e-49
gi|53715008|ref|YP_101000.1| hypothetical protein BF3723 [B... 194 7e-48
gi|153808888|ref|ZP_01961556.1| hypothetical protein BACCAC... 194 1e-47
gi|156111886|gb|EDO13631.1| hypothetical protein BACOVA_006... 190 2e-46
gi|29347450|ref|NP_810953.1| hypothetical protein BT_2040 [... 190 2e-46
gi|156861220|gb|EDO54651.1| hypothetical protein BACUNI_016... 178 6e-43
gi|150004580|ref|YP_001299324.1| hypothetical protein BVU_2... 172 5e-41
gi|120435477|ref|YP_861163.1| outer membrane efflux protein... 154 1e-35
gi|88806628|ref|ZP_01122145.1| putative puter membrane prot... 152 5e-35
gi|120435658|ref|YP_861344.1| outer membrane efflux protein... 147 1e-33
gi|149280160|ref|ZP_01886284.1| cation efflux protein [Pedo... 82 6e-14
gi|46202554|ref|ZP_00208564.1| COG1538: Outer membrane prot... 79 5e-13
gi|77164914|ref|YP_343439.1| Outer membrane efflux protein ... 73 3e-11
gi|149277817|ref|ZP_01883957.1| cation efflux protein [Pedo... 72 7e-11
gi|110599597|ref|ZP_01387833.1| Outer membrane efflux prote... 71 1e-10
gi|88802510|ref|ZP_01118037.1| putative transport-related, ... 70 3e-10
gi|148265386|ref|YP_001232092.1| outer membrane efflux prot... 69 4e-10
gi|39995934|ref|NP_951885.1| metal ion efflux outer membran... 66 5e-09
gi|110636586|ref|YP_676793.1| possible copper transport pro... 64 2e-08
gi|118745645|ref|ZP_01593614.1| outer membrane efflux prote... 63 3e-08
gi|150024970|ref|YP_001295796.1| Probable multidrug resista... 62 6e-08
gi|39997235|ref|NP_953186.1| metal ion efflux outer membran... 60 3e-07
gi|145620306|ref|ZP_01776341.1| outer membrane efflux prote... 60 3e-07
gi|120435649|ref|YP_861335.1| AcrB/AcrD/AcrF family heavy m... 56 4e-06
gi|110637916|ref|YP_678123.1| cation efflux protein [Cytoph... 56 5e-06
>gi|34539935|ref|NP_904414.1| outer membrane efflux protein [Porphyromonas gingivalis W83]
gi|34396246|gb|AAQ65313.1| outer membrane efflux protein [Porphyromonas gingivalis W83]
Length = 392
Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats.
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MKAIFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
MKAIFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP
Sbjct: 1 MKAIFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
Query: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE
Sbjct: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
Query: 121 AKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEI 180
AKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEI
Sbjct: 121 AKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEI 180
Query: 181 SRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEV 240
SRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEV
Sbjct: 181 SRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEV 240
Query: 241 AASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAA 300
AASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAA
Sbjct: 241 AASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAA 300
Query: 301 EMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYI 360
EMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYI
Sbjct: 301 EMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYI 360
Query: 361 VEMGLYYDTVSRAMEAERDYQQAFAELSAVDL 392
VEMGLYYDTVSRAMEAERDYQQAFAELSAVDL
Sbjct: 361 VEMGLYYDTVSRAMEAERDYQQAFAELSAVDL 392
>gi|53713382|ref|YP_099374.1| outer membrane efflux protein [Bacteroides fragilis YCH46]
gi|52216247|dbj|BAD48840.1| outer membrane efflux protein [Bacteroides fragilis YCH46]
Length = 391
Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats.
Identities = 215/387 (55%), Positives = 291/387 (75%)
Query: 6 ISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEVG 65
I I+A L + + AQ ++ +L +IEENN+ LKALRE T+A+KL N+TGI+LS+P+VE G
Sbjct: 5 ILIMALLASVSLVAQENIDSILFSIEENNSTLKALREETNAQKLGNKTGIYLSDPDVEFG 64
Query: 66 YLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCC 125
YLWGNP +IGNR DFSI Q+ DIPT+TGM+SR A Q+KL++ +Y ++R+N+LLEAK C
Sbjct: 65 YLWGNPGKIGNRQDFSIKQTFDIPTLTGMRSRLAGNQNKLVELQYASERINLLLEAKQYC 124
Query: 126 IELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQV 185
I+LIY L EL+ RLRHA+ IA+ Y RL GD + LEYNK++LNL++V+GE+SR++V
Sbjct: 125 IDLIYYNGLKKELKVRLRHAQAIADAYRQRLDRGDASILEYNKVQLNLSTVQGEMSRIEV 184
Query: 186 DRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQ 245
+R ALL L+RLNGG ++ F+ S Y+ LP +F W+ +KNP L Y ++++ SK+
Sbjct: 185 ERNALLSELKRLNGGMDVIFEASNYSPASLPVNFEDWYLSAQQKNPLLQYVKQQIEVSKE 244
Query: 246 QVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAAEMRET 305
QV L +A LP FSAGY E+ +++QG+S GIS+PLWENKNRVKQAKA V AA+ RE
Sbjct: 245 QVKLGKAMTLPKFSAGYSLERTLGQKYQGISVGISIPLWENKNRVKQAKAGVVAAQAREQ 304
Query: 306 DSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYIVEMGL 365
DS+QQ Y L+ LY RA+GL+ TA YR L +N LL KALD GEISLL+YIVE+GL
Sbjct: 305 DSKQQFYDRLRNLYMRASGLQQTAIAYRESLKALNNTALLMKALDVGEISLLNYIVEIGL 364
Query: 366 YYDTVSRAMEAERDYQQAFAELSAVDL 392
YYDTV++ + AERD+++A A+LSAV+L
Sbjct: 365 YYDTVNQTLAAERDFEKALADLSAVEL 391
>gi|60681634|ref|YP_211778.1| hypothetical protein BF2155 [Bacteroides fragilis NCTC 9343]
gi|60493068|emb|CAH07849.1| putative exported protein [Bacteroides fragilis NCTC 9343]
Length = 391
Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats.
Identities = 213/387 (55%), Positives = 290/387 (74%)
Query: 6 ISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEVG 65
I I+ L + + AQ ++ +L +IEENN+ LKALRE T+A+KL N+TGI+LS+P+VE G
Sbjct: 5 ILIMVLLASVSLVAQENIDSILFSIEENNSTLKALREETNAQKLGNKTGIYLSDPDVEFG 64
Query: 66 YLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCC 125
YLWGNP +IGNR DFSI Q+ DIPT+TGM+SR A Q+KL++ +Y ++R+N+LLEAK C
Sbjct: 65 YLWGNPGKIGNRQDFSIKQTFDIPTLTGMRSRLAGNQNKLVELQYASERINLLLEAKQYC 124
Query: 126 IELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQV 185
I+L+Y L EL+ RLRHA+ IA+ Y RL GD + LEYNK++LNL++V+GE+SR++V
Sbjct: 125 IDLVYYNGLKKELKVRLRHAQAIADAYRQRLDRGDASILEYNKVQLNLSTVQGEMSRIEV 184
Query: 186 DRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQ 245
+R ALL L+RLNGG ++ F+ S Y+ LP +F W+ +KNP L Y ++++ SK+
Sbjct: 185 ERNALLSELKRLNGGMDVIFEASNYSPASLPANFEDWYLSAQQKNPLLQYVKQQIEVSKE 244
Query: 246 QVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAAEMRET 305
QV L +A LP FSAGY E+ +++QG+S GIS+PLWENKNRVKQAKA V AA+ RE
Sbjct: 245 QVKLGKAMILPKFSAGYSLERTLGQKYQGISVGISIPLWENKNRVKQAKAGVVAAQAREQ 304
Query: 306 DSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYIVEMGL 365
DS+QQ Y L+ LY RA+GL+ TA YR L +N LL KALD GEISLL+YIVE+GL
Sbjct: 305 DSKQQFYDRLRNLYMRASGLQQTAIAYRESLKALNNTALLMKALDVGEISLLNYIVEIGL 364
Query: 366 YYDTVSRAMEAERDYQQAFAELSAVDL 392
YYDTV++ + AERD+++A A+LSAV+L
Sbjct: 365 YYDTVNQTLAAERDFEKALADLSAVEL 391
>gi|150008238|ref|YP_001302981.1| hypothetical protein BDI_1604 [Parabacteroides distasonis ATCC
8503]
gi|149936662|gb|ABR43359.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 394
Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats.
Identities = 129/392 (32%), Positives = 210/392 (53%), Gaps = 8/392 (2%)
Query: 1 MKAIFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
MK+ I ++T + AQ + DVL ++E NN L+A + ++KL + L +P
Sbjct: 1 MKSYIIVAALSVLTGGLSAQTSIEDVLRSVEANNKDLQANSQLVQSQKLEAKLDNNLPDP 60
Query: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
V + WGN +G +F +QS D P++ K + K + LD + R ILL+
Sbjct: 61 SVSYSHFWGNKEGMGFTGEFVASQSFDFPSVYVRKHKLTKAKSAGLDRQGMAFRQQILLQ 120
Query: 121 AKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEI 180
K C++L+ L+ RLR+A ++ Y RL+ G+ N LE NKI L L + E
Sbjct: 121 VKEVCLDLVLLNQQKNLLDTRLRNAEQLSAFYATRLEKGNANILETNKIDLELLNARTEA 180
Query: 181 SRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQV----AEKNPQLAYA 236
+ R A L L LNGG I F ++ Y LP + FD++ + +PQL
Sbjct: 181 RMNETSRIAKLQELATLNGGIAIEFTDTVYA---LPDKDVLSFDELRTEAMQSDPQLQTL 237
Query: 237 REEVAASKQQVALSRAAGLPVFSAGY-VSEKVGSERFQGVSFGISVPLWENKNRVKQAKA 295
R + + +QV++++A GLP F GY ++ G ERF G GI++PL+ N+N VKQAKA
Sbjct: 238 RSDQTTALRQVSVNKAKGLPGFELGYRMNPASGGERFNGFLVGITIPLFSNRNNVKQAKA 297
Query: 296 SVRAAEMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEIS 355
R EM+ + + + L+ LY+++ LK + + Y+ +L ++ LL KA+ AG+IS
Sbjct: 298 QARYTEMQLESASFTVENGLRQLYDQSVSLKKSIDEYKDVLKRQNSLVLLNKAIQAGQIS 357
Query: 356 LLDYIVEMGLYYDTVSRAMEAERDYQQAFAEL 387
+++Y V++ YY +V ++ + YQ+ A+L
Sbjct: 358 MIEYFVDVTTYYQSVQNYLQLQNQYQKVMAQL 389
>gi|154492603|ref|ZP_02032229.1| hypothetical protein PARMER_02237 [Parabacteroides merdae ATCC
43184]
gi|154087828|gb|EDN86873.1| hypothetical protein PARMER_02237 [Parabacteroides merdae ATCC
43184]
Length = 393
Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats.
Identities = 128/385 (33%), Positives = 214/385 (55%), Gaps = 2/385 (0%)
Query: 5 FISILAFLVTAPV-WAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVE 63
FI +A L +A V AQ + +VL ++E NN L+A R+ A+KL + L +P V
Sbjct: 4 FILTIALLSSALVAGAQTSIEEVLRSVETNNKELQANRQMVTAQKLEAKLDNNLPDPTVT 63
Query: 64 VGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKT 123
+L+GN +G + +QS D P++ +++ +K + + D + + R ILL+AK
Sbjct: 64 YSHLYGNKEGMGFTGELVASQSFDFPSLYMQRNKLSKQKGENYDRQGEEVRQQILLQAKE 123
Query: 124 CCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRV 183
C++LI+ L+ R + A +A Y+ RL+ GD N LE NKI+L L +V E+
Sbjct: 124 ACLDLIFLNQQKNLLDIRRKSAEQLAALYQQRLEQGDANILETNKIELELLNVRNEVRMN 183
Query: 184 QVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAAS 243
+ R LE LNGG I ++ Y + LP SF+ ++ E + +L + A S
Sbjct: 184 EAARVNKQRELEMLNGGIAIQLTDTAYEVVELPLSFADLRQEILENDRRLLSLQSAKAVS 243
Query: 244 KQQVALSRAAGLPVFSAGY-VSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAAEM 302
+Q+++++ GLP F GY ++ G ERF G GIS+PL+ N+N VKQAKA ++
Sbjct: 244 SRQISVNKTMGLPSFELGYRMNPSSGGERFNGFLVGISIPLFSNRNNVKQAKAQNLYTDL 303
Query: 303 RETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYIVE 362
+ + + +EL LY ++ LKT+ + Y +L + +N LL KA+ AG+IS+++Y V+
Sbjct: 304 QLESTMTAVENELLQLYNQSVALKTSIDEYGEVLESQNNLALLNKAIQAGQISMIEYFVD 363
Query: 363 MGLYYDTVSRAMEAERDYQQAFAEL 387
+ Y ++ M+ + +YQ+ A+L
Sbjct: 364 VTTLYQSMQNHMQLQNEYQKVMAQL 388
>gi|53715008|ref|YP_101000.1| hypothetical protein BF3723 [Bacteroides fragilis YCH46]
gi|60682971|ref|YP_213115.1| putative puter membrane protein [Bacteroides fragilis NCTC 9343]
gi|52217873|dbj|BAD50466.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60494405|emb|CAH09201.1| putative puter membrane protein [Bacteroides fragilis NCTC 9343]
Length = 392
Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats.
Identities = 119/387 (30%), Positives = 202/387 (52%)
Query: 1 MKAIFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
MK I I + + AQ G++ VL IE NN L+A + ++KL RT L +P
Sbjct: 1 MKRITILAATLFALSGLQAQTGIDGVLRNIETNNKELQANAQLIASQKLETRTDNNLPDP 60
Query: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
+ +LW N + + ++QS D P++ +++ +++ D + R ILL+
Sbjct: 61 TLSYAHLWNNKDKNNTIGELVVSQSFDFPSLYATRNQLNRLKAGAFDGQKSVFRQGILLQ 120
Query: 121 AKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEI 180
AK C+++I + L RLR+A ++ Y RL+ GD N +E NKI L L +V+ E
Sbjct: 121 AKDVCLDIIMLRKQQQILTERLRNAEELSAMYAKRLQTGDANVIETNKINLELLNVKTEA 180
Query: 181 SRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEV 240
S + + + L LNG + F+++ Y ++ P ++ +V + L E
Sbjct: 181 SLNETALRNKIQELTALNGNIPVVFEDADYPAVIFPSNYEELKTEVLASDYTLQALNSES 240
Query: 241 AASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAA 300
AA+++Q+A++++ LP GY E F GV G S PL+EN+N+VK AKA
Sbjct: 241 AAARKQIAVNKSQWLPKLELGYRRNTESGEPFNGVVVGFSFPLFENRNKVKIAKAQSLNV 300
Query: 301 EMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYI 360
+++ ++ Q+ SEL LY A L+T+ E Y + + LLK+AL G+IS+++Y
Sbjct: 301 DLQRANTSVQVESELTQLYREAHTLRTSMEEYEKTFQAQQDLSLLKQALTGGQISMIEYF 360
Query: 361 VEMGLYYDTVSRAMEAERDYQQAFAEL 387
VE+ + Y + ++ E YQ+A A++
Sbjct: 361 VEVSVVYQSKQNYLQLENQYQKAMAKI 387
>gi|153808888|ref|ZP_01961556.1| hypothetical protein BACCAC_03189 [Bacteroides caccae ATCC 43185]
gi|149128714|gb|EDM19932.1| hypothetical protein BACCAC_03189 [Bacteroides caccae ATCC 43185]
Length = 397
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 120/383 (31%), Positives = 199/383 (51%)
Query: 5 FISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEV 64
F + F +T V AQN + VL IE NN L+A + ++KL ++T L +P +
Sbjct: 10 FAATALFTLTGGVQAQNSIEQVLKNIETNNKELQANAQLITSQKLESKTDNNLPDPTLSY 69
Query: 65 GYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTC 124
+LWG + + ++QS D P++ +++ +++ D + R + LL+AK
Sbjct: 70 AHLWGAKDKNETIGELVVSQSFDFPSLYATRNKLNRLKAGAYDSQADVFRQDKLLQAKEV 129
Query: 125 CIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQ 184
C+++I + LE RLR+A +AE Y RL+ GD N LE NKI L L +V E S +
Sbjct: 130 CLDIIMLRQQKQILEERLRNAEVLAEMYAKRLQTGDANALETNKINLELLNVRTEASLNE 189
Query: 185 VDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASK 244
+ + L LNG + F+ESRY P + + +V + L E ++
Sbjct: 190 TALRNKMQELNTLNGNIPVVFEESRYPLTPFPSDYQILKSEVLSADRTLMALGNESLVAR 249
Query: 245 QQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAAEMRE 304
+Q+A++++ LP GY F GV G S PL+EN+N+VK AKA ++++
Sbjct: 250 KQIAVNKSQWLPKLELGYRRNTETGTPFNGVVVGFSFPLFENRNKVKIAKAQALNIDLQK 309
Query: 305 TDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYIVEMG 364
++ Q+ SEL LY A L + E Y++ + + LLK+AL G+IS+++Y VE+
Sbjct: 310 ENATLQVESELSQLYREAKALHNSMEEYKKTFRSQQDLALLKQALTGGQISMIEYFVEVS 369
Query: 365 LYYDTVSRAMEAERDYQQAFAEL 387
+ Y + ++ E YQ+A A +
Sbjct: 370 VIYQSHQNYLQLENQYQKAMARI 392
>gi|156111886|gb|EDO13631.1| hypothetical protein BACOVA_00674 [Bacteroides ovatus ATCC 8483]
Length = 394
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 120/379 (31%), Positives = 196/379 (51%)
Query: 9 LAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEVGYLW 68
L FL V AQNG+ VL IE NN L+A + ++KL +T L +P + +LW
Sbjct: 11 LLFLTIGEVQAQNGIEQVLKNIETNNKELQANEQLITSQKLEAKTDNNLPDPTLSYAHLW 70
Query: 69 GNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIEL 128
G + + ++QS D P++ +++ +++ LD + R LL+AK C+++
Sbjct: 71 GAKDKSETIGELVVSQSFDFPSLYATRNKLNRLKAGTLDSQSDVFRQEKLLQAKELCLDI 130
Query: 129 IYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRK 188
I + LE RLR+A +A+ Y RL+ GD N LE NKI L L +V+ E S + +
Sbjct: 131 IMLRQQKHILEERLRNAEELAKMYAKRLQTGDANALETNKINLELLNVKTEASLNETALR 190
Query: 189 ALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVA 248
L LNG + F+E++Y I P + + +V + L E + +Q+A
Sbjct: 191 NKQQELNTLNGNIPVVFEENQYPTIPFPSDYQMLKSEVMATDRTLMALGNESLVAHKQIA 250
Query: 249 LSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAAEMRETDSR 308
++++ LP GY F GV G S PL+EN+N+VK AKA ++++ ++
Sbjct: 251 VNKSQWLPKLELGYRRNTETGVPFNGVVVGFSFPLFENRNKVKIAKAQALNIDLQKDNAT 310
Query: 309 QQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYIVEMGLYYD 368
Q+ SEL LY A L + E Y + + + LLK+AL G+IS+++Y VE+ + Y
Sbjct: 311 LQVESELAQLYREAKTLHASMEEYSKTFQSQQDLALLKQALTGGQISMIEYFVEVSVIYQ 370
Query: 369 TVSRAMEAERDYQQAFAEL 387
+ ++ E YQ+A A +
Sbjct: 371 SHQNYLQLENQYQKAMARI 389
>gi|29347450|ref|NP_810953.1| hypothetical protein BT_2040 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339350|gb|AAO77147.1| putative outer membrane efflux protein [Bacteroides
thetaiotaomicron VPI-5482]
Length = 397
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 120/383 (31%), Positives = 196/383 (51%)
Query: 5 FISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEV 64
+S +T V AQ+G+ VL IE NN L+A + ++KL +T L +P +
Sbjct: 10 LVSCALLTLTGEVQAQSGIEQVLKNIEANNKELQANAQLITSQKLEAKTDNNLPDPTLSY 69
Query: 65 GYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTC 124
+LWG + + ++QS D P++ +++ +++ D + R LL AK
Sbjct: 70 AHLWGAKDKNETIGELVVSQSFDFPSLYATRNKLNRLKAGAFDSQADVFRQEKLLLAKEV 129
Query: 125 CIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQ 184
C+++I + LE RLR+A +A+ Y RL+ GD N LE NKI L L +V+ E S +
Sbjct: 130 CLDIIMLRQQKHILEERLRNAEELAKMYAKRLQTGDANALETNKINLELLNVKTETSLNE 189
Query: 185 VDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASK 244
+ L L LNG + F+ES Y P + + +V + L E ++
Sbjct: 190 TALRNKLQELNTLNGNIPVVFEESTYPATPFPADYQILKSEVLSADRTLMAFNNESLVAR 249
Query: 245 QQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAAEMRE 304
+Q+A++++ LP GY F GV G S PL+EN+N+VK AKA ++++
Sbjct: 250 KQIAVNKSQWLPKLELGYRRNTETGTPFNGVVVGFSFPLFENRNKVKIAKAQALNIDLQK 309
Query: 305 TDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYIVEMG 364
++ Q+ SEL LY A L T+ E YR+ + LLK+AL G+IS+++Y VE+
Sbjct: 310 DNATLQVESELAQLYREAKTLHTSMEEYRKTFQAQQDLALLKQALTGGQISMIEYFVEVS 369
Query: 365 LYYDTVSRAMEAERDYQQAFAEL 387
+ Y + ++ E YQ+A A +
Sbjct: 370 VIYQSHQNYLQLENQYQKAMARI 392
>gi|156861220|gb|EDO54651.1| hypothetical protein BACUNI_01634 [Bacteroides uniformis ATCC 8492]
Length = 408
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 123/401 (30%), Positives = 194/401 (48%), Gaps = 15/401 (3%)
Query: 2 KAIFISILAFLVTAPVWAQ-NGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
K FI A L A + AQ +G++ VL IE NN L+A ++KL N+T L +P
Sbjct: 3 KRFFIFSAAILAFAGMSAQTSGIDAVLQQIEANNKELQANSHLISSQKLENKTNNNLPDP 62
Query: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
+ +LW + + I+QS D PT+ + + +++ LD + R ILL+
Sbjct: 63 TLSYAHLWDSKNSDETVGEMVISQSFDFPTLYATRGKMNRLKTNALDAQATAFRQQILLQ 122
Query: 121 AKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEI 180
AK C+++I + L+ RL++A ++ Y RL+ GD N LE NKI L L +V E
Sbjct: 123 AKEVCLDIIMLQRQQALLDERLKNAEELSAMYTRRLETGDANALETNKINLELLNVRTEA 182
Query: 181 SRVQVDRKALLVRLERLNGGKEIAFDESR--------------YTEIVLPQSFSVWFDQV 226
Q L L LNG + + R Y + LP F D++
Sbjct: 183 RMNQTALNNKLKELLVLNGNQPLTPGRPRPDTTPDAQTLGLTEYPAVPLPADFHPLADEL 242
Query: 227 AEKNPQLAYAREEVAASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWEN 286
+P L + E +A+++Q++ S+ LP GY GV G S PL+EN
Sbjct: 243 LASDPTLQSLQGESSAARKQISASKQGWLPKLELGYRRNTESGHPLNGVVVGFSFPLFEN 302
Query: 287 KNRVKQAKASVRAAEMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLK 346
+N+VK AK + ++ ++ Q S L LYE A L + E Y R + LLK
Sbjct: 303 RNKVKIAKTQALNIDYQKENAALQASSALWQLYEEAKNLHASMEEYERTFHQQQDLSLLK 362
Query: 347 KALDAGEISLLDYIVEMGLYYDTVSRAMEAERDYQQAFAEL 387
+AL G+IS+++Y VE+ + Y + + ++ E YQ+A A++
Sbjct: 363 QALMGGQISMIEYFVEISVVYQSKTNLLQLENQYQKAMAQI 403
>gi|150004580|ref|YP_001299324.1| hypothetical protein BVU_2037 [Bacteroides vulgatus ATCC 8482]
gi|149933004|gb|ABR39702.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 389
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 122/387 (31%), Positives = 200/387 (51%), Gaps = 3/387 (0%)
Query: 1 MKAIFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
MK I + I+A + AQ+ + +L +IE+NN LKA + + DA K+ NRT L +P
Sbjct: 1 MKRILV-IIALCSPLLMQAQS-IEHILKSIEQNNKELKAQKHAADATKMENRTNNNLPDP 58
Query: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
V + N AE G+ T+F +Q D PT ++R A +Q++ +D + + R +ILL
Sbjct: 59 TVSYSSFYSNGAEGGHGTEFVASQGFDFPTQYIARNRQATLQNEAVDKQQQAARRDILLN 118
Query: 121 AKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEI 180
AK C++LI ++ R+++A + YE RL GD N LE NKIK+ +V+ E+
Sbjct: 119 AKNLCLDLILLNQEKTLMDIRMKNADELQALYEKRLTTGDANILEVNKIKMERMNVQTEV 178
Query: 181 SRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEV 240
++ + L L +NG + F E+ Y I ++V D+V + L A
Sbjct: 179 AQNSAAHRTALQSLLAMNGNMPLEFAETTYPAIQEINDYNVMRDEVMASDLDLQAAAATA 238
Query: 241 AASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAA 300
A+++QV++ R LP AG+ + G G S+PL++N+ +VK AKA +A
Sbjct: 239 RAAEKQVSVDRQGWLPKLEAGFRRNTDDAVSMNGFVVGGSLPLFQNRKKVKIAKAQAISA 298
Query: 301 EMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYI 360
++ + ++ ++ + L L+ LK Y L + DLLK+AL G+ISL++Y
Sbjct: 299 QLMQESAKDRVEASLMSLFNEMQQLKDAMNAYDVPLMYR-SLDLLKQALTEGQISLIEYF 357
Query: 361 VEMGLYYDTVSRAMEAERDYQQAFAEL 387
VE Y + M+ E YQ+ A +
Sbjct: 358 VETESIYKNLQAYMQIENQYQKVMANI 384
>gi|120435477|ref|YP_861163.1| outer membrane efflux protein [Gramella forsetii KT0803]
gi|117577627|emb|CAL66096.1| outer membrane efflux protein [Gramella forsetii KT0803]
Length = 394
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 113/388 (29%), Positives = 192/388 (49%), Gaps = 3/388 (0%)
Query: 2 KAIFISILAFLVTAPVWAQN-GMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
+ I +I L++ +AQ+ G+ D+L+ I +NN LKA + ++ L N+T L +P
Sbjct: 3 RYIVSAICGILISIGSFAQSPGIKDILNQISKNNRELKAYQSYMASQNLGNKTENNLQDP 62
Query: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
+V YL E + ++ ++Q + PT+ G +S+ + Q +LL+ Y T R +LL+
Sbjct: 63 QVSAFYLPFGEHETDDYYEYQVSQRFEFPTVYGARSKRIEKQKELLELEYNTMRQEVLLD 122
Query: 121 AKTCCIEL-IYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGE 179
AK +EL I K LE ER + A+ + + + A LE NK K+ + E
Sbjct: 123 AKKQLLELQILQKRKELEQER-VEQAKQVYDQIQRLFDAEQIGILELNKAKVAWLQEQFE 181
Query: 180 ISRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREE 239
+ +++++ K + L++LNGG I D+ E S +++ + Q+
Sbjct: 182 MDQIEIEIKNTFLELQKLNGGNAINEDQFYLMEDAELASMQGLWEEKLSADAQVQQLTAR 241
Query: 240 VAASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRA 299
A ++QQV L + LP S GY + V S + G G+S+PLW + N+VK A+A++
Sbjct: 242 EALAEQQVKLEKNKVLPDLSIGYNYQGVNSSNYSGFLGGLSIPLWNSNNKVKAARANLEY 301
Query: 300 AEMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDY 359
+ Q Y+ Q Y++ LK E Y+ ++ +LL KA GE S LDY
Sbjct: 302 TQANTGAETAQFYTRFQENYQQYHLLKRKFEEYQETFKDLNSEELLFKAYKLGEFSFLDY 361
Query: 360 IVEMGLYYDTVSRAMEAERDYQQAFAEL 387
E+ Y ++ +E E++ Q A L
Sbjct: 362 YREVEFYRQAYNKKLEMEKELLQLKATL 389
>gi|88806628|ref|ZP_01122145.1| putative puter membrane protein [Robiginitalea biformata HTCC2501]
gi|88783460|gb|EAR14632.1| putative puter membrane protein [Robiginitalea biformata HTCC2501]
Length = 412
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 106/387 (27%), Positives = 188/387 (48%), Gaps = 1/387 (0%)
Query: 2 KAIFISILAFLVTAPVWAQN-GMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
K +I L + V+AQ ++ +L IE+NN L+A+ + KL ++G L +P
Sbjct: 21 KHFVFAICGCLFLSGVFAQTPEIDGILQQIEQNNRELQAISSYLEGRKLELKSGNNLPDP 80
Query: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
+ YL G+ T+F ++Q+++ PT+ G + + Q+ L+ Y + R ILL
Sbjct: 81 QFGFFYLPNGDNSTGDYTEFQVSQTIEFPTVYGARGTLIEEQETQLELEYLSRRQEILLR 140
Query: 121 AKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEI 180
AK +ELIY + + RL ART+ + E + LE NK K+ + ++
Sbjct: 141 AKGHGLELIYLNKRIATEQERLEQARTVMDQVEELYRREQNGILELNKAKVAWLQDQFKV 200
Query: 181 SRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEV 240
+++ +R+ + + L+ LNGG + + S ++ + V + + L R+E
Sbjct: 201 QQLENERRNVRLLLQNLNGGTPLKIEGSEFSGTLDIADLDVLWQDRLVHDADLVLIRQEE 260
Query: 241 AASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAA 300
+ Q +A+SR LP +AGY + V + G+ GIS+PLW N+N+VK A++ +
Sbjct: 261 VIAAQALAVSRNKSLPNLTAGYNQQGVPGAIYSGLYAGISLPLWSNRNKVKSARSHLEFQ 320
Query: 301 EMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYI 360
E+ T Q+ + + + + Y+ L+ D+ LL +A GEIS +DY
Sbjct: 321 EVNSTRKTQEARTRFEKQVNEYQMMLSRYREYQTTLSGMDSESLLMEAYQLGEISFMDYY 380
Query: 361 VEMGLYYDTVSRAMEAERDYQQAFAEL 387
E+ Y D ++ E + + AEL
Sbjct: 381 RELQFYRDAYDSMIKMEYELFRQQAEL 407
>gi|120435658|ref|YP_861344.1| outer membrane efflux protein [Gramella forsetii KT0803]
gi|117577808|emb|CAL66277.1| outer membrane efflux protein [Gramella forsetii KT0803]
Length = 394
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 120/390 (30%), Positives = 203/390 (52%), Gaps = 7/390 (1%)
Query: 2 KAIFISILAFLVTAPVWAQN-GMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNP 60
+ I ++ L+ +AQ+ GMN +L I +NN LKA + ++ L N+T L +P
Sbjct: 3 RNIVSAVCGILIFMGSFAQDTGMNGILEQISQNNRQLKAYQSYMASQNLANKTENNLQDP 62
Query: 61 EVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLE 120
EV YL + G+ T++ ++Q + PT+ G +S+ + Q +LL+ Y+T R +LL
Sbjct: 63 EVSAFYLPFGEHQTGDYTEYLVSQQFEFPTVYGARSKRIEKQKELLELEYETLREEVLLN 122
Query: 121 AKTCCIEL-IYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGE 179
AK +EL K LE E+R+ A+ + + + A LE NK K+ + E
Sbjct: 123 AKKQLLELQTLQKRKELE-EKRVEQAKQVYDQIQRLFNAEQIGILELNKAKVAWLQEQFE 181
Query: 180 ISRVQVDRKALLVRLERLNGGKEIAFDESRY-TEIVLPQSFSVWFDQVAEKNP-QLAYAR 237
+ +V + ++ L+ L++LNGG I +E + + L + ++W ++++E Q AR
Sbjct: 182 LDQVNIRIRSTLLELQKLNGGNTIEAEEVEFFADPELAEMQTLWEEKLSEDAEIQQLKAR 241
Query: 238 EEVAASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASV 297
E +A +QQV L + LP S GY + V S + G G+S+PLW +KN+VK A+A++
Sbjct: 242 ENLA--QQQVKLEKNKILPDLSIGYNYQGVNSSNYSGFLGGLSIPLWNSKNKVKAAEANL 299
Query: 298 RAAEMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLL 357
+ +LY+ Q Y++ LK E Y++ ++ +LL KA + GE S L
Sbjct: 300 EYTQDNTGAETAELYTRFQEDYQQYQLLKRKYEEYQQTFQDLNSEELLFKAYELGEFSFL 359
Query: 358 DYIVEMGLYYDTVSRAMEAERDYQQAFAEL 387
DY E+ Y + +E E++ Q A L
Sbjct: 360 DYYREVEFYRQAFNNMLEMEKELLQLKATL 389
>gi|149280160|ref|ZP_01886284.1| cation efflux protein [Pedobacter sp. BAL39]
gi|149229174|gb|EDM34569.1| cation efflux protein [Pedobacter sp. BAL39]
Length = 1461
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 98/416 (23%), Positives = 172/416 (41%), Gaps = 42/416 (10%)
Query: 3 AIFISILAFLVTAPVWAQNG------MNDVLHAIEENNTALKA--LRESTDAEKLNNRTG 54
A+FI+ L L A G M + NN ++K+ L+ S ++ T
Sbjct: 1051 ALFIAGLTLLAPASQAQTPGTGSPINMQQAIQTAISNNQSVKSSGLQISQRQALRSSSTD 1110
Query: 55 IFLSNPEVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDR 114
+ +N EV+ G + G I +FS +QS+ P + + Q + + +
Sbjct: 1111 LGKTNIEVQYGQING----IKRDNNFSASQSIPYPGLFKNQRNLYDAQIRGAEISLSVTQ 1166
Query: 115 MNILLEAKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLA 174
+ + K+ +L Y AL + + + R +AG+TN LE +
Sbjct: 1167 KELTYQVKSSYTQLAYFIALQELYKSQDSVYSNFLKAASLRYQAGETNLLEKTTAETQYN 1226
Query: 175 SVEGEISRVQVDRKALLVRLERLNGGK---EIAFDESRYTEIVLPQSFSVWFDQVAEKNP 231
V ++S+ Q D A L+RL K EI +E R + + D +NP
Sbjct: 1227 EVRNQMSKNQSDILAYTSELQRLLNSKSSIEIEKEEFRQADWN-----NTGLDSAITRNP 1281
Query: 232 QLAYAREEVAASKQQVALSRAAGLPVFSAGYVSEKV--------------GSERFQGVSF 277
LA R+++ + + + + +A P F+ GY ++ + G +RFQGV
Sbjct: 1282 LLALQRQQIEIADKAIGVEKARSGPDFTIGYFNQSIIGSQNVNGQDQYFNGGKRFQGVQA 1341
Query: 278 GISVPLWEN--KNRVKQAKASVRAAEMRETDSRQQLYSELQLLYERAAGLKTTAENYRRL 335
GIS+PL+ +R+K A + AE + + R L + Y+ + E Y+
Sbjct: 1342 GISIPLFFKPFSSRIKAATIEKQVAESQFSLFRTNLQGQYNRAYQDLLKNSRSIEYYKT- 1400
Query: 336 LTTSDNADLLKK----ALDAGEISLLDYIVEMGLYYDTVSRAMEAERDYQQAFAEL 387
+ NA+L+ K A GEI ++Y+ + Y D ++A +Y Q+ L
Sbjct: 1401 -SALPNANLILKQSQIAFQNGEIGYVEYLQGLRTYSDIRFNYLQAINEYNQSVYTL 1455
>gi|46202554|ref|ZP_00208564.1| COG1538: Outer membrane protein [Magnetospirillum magnetotacticum
MS-1]
Length = 428
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 79/324 (24%), Positives = 144/324 (44%), Gaps = 20/324 (6%)
Query: 77 RTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLL 136
+T S Q +++ + + RAA++ + L W Y+T R++ LLE I L+ + L
Sbjct: 91 QTTLSFNQLIELGSKREKRVRAARLDESLAAWDYETKRLDTLLETTRAFIGLLAAQRKLE 150
Query: 137 ELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLER 196
E L R + R++AG + LE + ++ LA+ + R + + A RL
Sbjct: 151 LAESILTLDRQVHTTVVERVRAGRVSPLEERRAQVALANATVSVDRARREVTAARDRLAM 210
Query: 197 LNGGKEIAFDES--RYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVALSRAAG 254
GGK +FD + E+ P+ + +A +NP LA EV + + +V + R+
Sbjct: 211 QWGGKVASFDRAIGNLAEVSAPRPLAELL-SLAAQNPDLARWATEVDSREAKVNVERSKD 269
Query: 255 LPVFSAGYVSEKVGSERFQGVSFGISVPL----------WENKNRVKQAKASVRAAEMRE 304
+P + + G +R GIS+P+ + + R+ + +A RAAE R
Sbjct: 270 IPDPTLSAGVRRYGEDRSNAFIAGISIPIPVFGLNRGNVLDAQERLAKGRAEQRAAEARI 329
Query: 305 TDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNA-DLLKKALDAGEISLLDYIVEM 363
T + + + +L +E L R +L + A D + G+ +L+D +
Sbjct: 330 TTAVKMGFEKLSSAFEEVNSLN------RDILPAATTAFDGAGEGYRQGKFALIDVLDSQ 383
Query: 364 GLYYDTVSRAMEAERDYQQAFAEL 387
+ R ++A +YQ A AE+
Sbjct: 384 RSLTEAQGRLVDATAEYQIARAEM 407
>gi|77164914|ref|YP_343439.1| Outer membrane efflux protein [Nitrosococcus oceani ATCC 19707]
gi|76883228|gb|ABA57909.1| Outer membrane efflux protein [Nitrosococcus oceani ATCC 19707]
Length = 472
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 80/371 (21%), Positives = 160/371 (43%), Gaps = 24/371 (6%)
Query: 34 NTALKALRESTDAEKLNNRTGIFLSNPEVEV-GYLWGNPA---EIGNRTDFSITQSVDIP 89
N L A + ++ L NP + V G GN A G T ++Q + +
Sbjct: 93 NPTLAAFSQEIRVQEARVLQAGLLPNPRLSVQGSNLGNAALKGPDGASTTVQLSQLILLG 152
Query: 90 TITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRLRHARTIA 149
+ +AA++ L W Y+T R+N+L + I ++ + L +++ + A+ +A
Sbjct: 153 GKIAKRIKAAQLTQDLAGWDYETKRVNVLTQVAQSFIAVLSAQRRLALVQQLVSLAQQVA 212
Query: 150 EGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERLNGGKEIAFDES- 208
R++AG + +E K ++ L+SV +++R + + +L G F ++
Sbjct: 213 TTVSKRVQAGKISPVEETKAQVALSSVHIQLTRAERNLTTARKQLAATWGSTTPRFQQAA 272
Query: 209 -RYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVALSRAAGLPVFSAGYVSEKV 267
+ ++ S Q+ +NP LA E+A + + L ++ +P + + +
Sbjct: 273 GQMGDVASLPSLE-QLTQLISQNPDLARWTTEIAQRQAFIKLEKSKAIPDITVNFGGTEY 331
Query: 268 GSERFQGVSFGISVPLW----------ENKNRVKQAKASVRAAEMRETDSRQQLYSELQL 317
+ V GIS+PL ++++ +A+ + RAA++R + Y L
Sbjct: 332 ANNGDYAVMAGISIPLMLFDRNQGNILTAEHQLTKAEEARRAAQVRVATALSTAYQRLAA 391
Query: 318 LYERAAGLKTTAENYRRLLTTSDNA-DLLKKALDAGEISLLDYIVEMGLYYDTVSRAMEA 376
+ A LKT ++L + +A D + K G+ + L + +D+ S+ + A
Sbjct: 392 AHAEATILKT------QILPGAQSAFDAVNKGFRLGKFAFLSVLDAQRTLFDSKSQYLRA 445
Query: 377 ERDYQQAFAEL 387
DY QA E+
Sbjct: 446 LTDYHQAATEV 456
>gi|149277817|ref|ZP_01883957.1| cation efflux protein [Pedobacter sp. BAL39]
gi|149231505|gb|EDM36884.1| cation efflux protein [Pedobacter sp. BAL39]
Length = 1469
Score = 71.6 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 80/390 (20%), Positives = 159/390 (40%), Gaps = 31/390 (7%)
Query: 23 MNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEVGYLWGNPAEIG-NRTDFS 81
+++VL ++ +NN +K+L STD ++ ++G +PE + +P G N +
Sbjct: 1086 LDEVLESVLKNNLKVKSLSLSTDQARMLEKSGF---DPEKTQFSIAQDPTSGGGNDNAIN 1142
Query: 82 ITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERR 141
+TQ+ P + + + +Q L + R I+ + + +Y LL L +
Sbjct: 1143 VTQTFSWPGLYHNQRKVLGLQTALSEKSGAYTRSEIIRDTRQAWHHYLYYLQLLKVLNFQ 1202
Query: 142 LRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERL-NGG 200
+ E R K+G+T+ LE + V+ + + K ++L++L N
Sbjct: 1203 DSIYGAFIDKAEVRFKSGETSNLELMTARTKYQEVQSLKNTAKAGLKIQELQLQQLMNEK 1262
Query: 201 KEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVALSRAAGLPVFSA 260
+ + + L + ++ NP +AY ++V + +V L ++ +P FS
Sbjct: 1263 RPLKPTVQELKPLTLTDADTI----ATSSNPLIAYYGQQVELAAARVKLQQSRAMPDFSL 1318
Query: 261 GYVSEKV--------------GSERFQGVSFGISVPLWENKNRVKQAKASVRAAEMRETD 306
GY + V R G+ G++VP++ R K S + A ++
Sbjct: 1319 GYSQQLVIRSFDPANLNRDYTPGTRIAGIQLGVAVPVFNKAGRAKV--RSEKIAAQLASN 1376
Query: 307 SRQQLYSELQLLYERAAGLKTTAENYRRLLTTS------DNADLLKKALDAGEISLLDYI 360
RQQ ++L L Y++ A T+ + + + + D GEI ++YI
Sbjct: 1377 ERQQAQNQLDLQYQQKLQEYQNASQMLSYYQTTGARQADEQLRIAQVSFDLGEIGYMEYI 1436
Query: 361 VEMGLYYDTVSRAMEAERDYQQAFAELSAV 390
L + +E + Q EL+ +
Sbjct: 1437 QNTALAIQSKISYLETLNQFNQTAIELAFI 1466
>gi|110599597|ref|ZP_01387833.1| Outer membrane efflux protein [Geobacter sp. FRC-32]
gi|110549644|gb|EAT62834.1| Outer membrane efflux protein [Geobacter sp. FRC-32]
Length = 415
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 96/410 (23%), Positives = 171/410 (41%), Gaps = 33/410 (8%)
Query: 8 ILAFLVTAPVWAQNGMNDVLHAIE---ENNTALKALREST---DAEKLNNRTGIFLSNPE 61
IL FL +APV+A+ + IE +NN LK+ RE DA K NR G+ L NP
Sbjct: 4 ILCFLTSAPVFAETQKLALPQVIEISLQNNGDLKSFREEKGIRDAGK--NRAGL-LPNPT 60
Query: 62 VEV----GYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNI 117
+E+ G L G+ AE N I+Q + + A+ + W+ +
Sbjct: 61 LELNGGTGALTGSSAE--NSLSLGISQEFLLAGKRHKRLVIAEQELAAYRWQLADRERAL 118
Query: 118 LLEAKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVE 177
E K + I + L +R + R + + + RL AGD +LE N +K+ L E
Sbjct: 119 REEVKMAFYDAILAEQRLNLTDRSIALNRQLLDVTKERLAAGDIPELEMNLVKVELTRSE 178
Query: 178 G---EISRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLA 234
G E+ R + +A L L L + A + ++ +S K P L
Sbjct: 179 GTRIEVERALLQNRARLFTLMGLPAIESPAIAGNLDNDLPTAKSLVDLKQLALVKRPDLK 238
Query: 235 YAREEVAASKQQVALSRAAGLPVFSAGYV------------SEKVGSERFQGVSFGISVP 282
E + + +AL+++ +P +AG+ E ++ GV I +P
Sbjct: 239 VLEAEKSKGEADIALAKSEAIPNLTAGFTVTREATTIEVGGVEGKDTDYIVGVKLSIPIP 298
Query: 283 LWE-NKNRVKQAKASVRAAEMRETDSRQQLYSELQLLYERAAGLKTTAENYRR--LLTTS 339
+++ N+ +++A+A + R T + ++ E++ + Y+ +
Sbjct: 299 VFDKNQAGIQEARAKRSTTDSRFTAATRRAEREVETAHASYLNADKILSLYKSNIIPQLE 358
Query: 340 DNADLLKKALDAGEISLLDYIVEMGLYYDTVSRAMEAERDYQQAFAELSA 389
+N L ++A GE+ +L I E ++++ + A Q A +L A
Sbjct: 359 ENLKLTQEAYRLGEVGILAVIQEQKKFFESNEAYLTALHSRQLALTKLEA 408
>gi|88802510|ref|ZP_01118037.1| putative transport-related, membrane protein [Polaribacter irgensii
23-P]
gi|88781368|gb|EAR12546.1| putative transport-related, membrane protein [Polaribacter irgensii
23-P]
Length = 1471
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 146/349 (41%), Gaps = 19/349 (5%)
Query: 23 MNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEVGYLWGNPAEIGNRTDFSI 82
+ D + ++N +LK + E+ T + N +V G + G +T +
Sbjct: 1097 LADAIAMAKQNYPSLKESQAFIARERAMEGTSFDMGNTKVFTGKDEYSNNIPGVQTTVGV 1156
Query: 83 TQSVDIPTITGM-KSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERR 141
Q +I ++G KS+ K + L + Y + ++ ++ YNKA LL E+
Sbjct: 1157 QQG-NIDLLSGFSKSKFYKQRVALGEKFYAVNAQQLVRNVMLAYEQINYNKAQLLFAEQL 1215
Query: 142 LRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALL--VRLERLNG 199
+ R G+T +LE+ S E +VQV R+ + + +
Sbjct: 1216 DNVYANFKTAAQLRYNTGETGKLEF-------ISASSEYQKVQVFRQQASDDIEIAKRAL 1268
Query: 200 GKEIAFDESRYTEIVL--PQSFSVWFDQVA-EKNPQLAYAREEVAASKQQVALSRAAGLP 256
+ + DE T VL P + + D + NP L Y+ + VA SK V++ ++ LP
Sbjct: 1269 TQYLGTDEPIETVSVLYKPMNLNRLMDATSVANNPILQYSLQSVAVSKANVSVEKSKFLP 1328
Query: 257 VFSAGYVSEKVGS-ERFQGVSFGISVPLW--ENKNRVKQAKASVRAAEMRETDSRQQLYS 313
FS Y + V + F GI +PLW K+RVK AKASV AE + + S
Sbjct: 1329 KFSLSYGRQVVANVSGFNSYQAGIQIPLWFFPQKSRVKAAKASVMIAENQYLEQEAITES 1388
Query: 314 ELQLLYERAAGLKTTAENYRR--LLTTSDNADLLKKALDAGEISLLDYI 360
+ L + K T + Y LL + + A GEI ++YI
Sbjct: 1389 TISQLLKSLEKTKKTLKYYEEGALLLAEEQITTAQLASKEGEIDYVNYI 1437
>gi|148265386|ref|YP_001232092.1| outer membrane efflux protein [Geobacter uraniumreducens Rf4]
gi|146398886|gb|ABQ27519.1| outer membrane efflux protein [Geobacter uraniumreducens Rf4]
Length = 431
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 95/389 (24%), Positives = 168/389 (43%), Gaps = 32/389 (8%)
Query: 31 EENNTALKALRESTDAEKLNNRTGIFLSNPEVEV----GYLWGNPAEIGNRTDFSITQSV 86
++NN LKALRE + NP +++ G L G+P+E N I+Q
Sbjct: 43 QQNNGELKALREEKGIREAGKIKAGLYPNPVLDLDGTTGELSGSPSE--NLISVGISQEF 100
Query: 87 DIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRLRHAR 146
G + A + + D + ++ E KT +L+ + ER +
Sbjct: 101 LTMGKRGKRLAVADKEIESFDRQVDNSGRLLVEEVKTTFYDLLLAGKRVELAERSIALNN 160
Query: 147 TIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDR-----KALLVRLERLNGGK 201
+ E + RL+AGD +LE N ++ +A EG+ +V+ +R KA L+ L L +
Sbjct: 161 QLLEVTKQRLEAGDIPELEVNLARVEVARSEGK--KVEAERGLYPAKARLLALTGLPPNE 218
Query: 202 EIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVALSRAAGLPVFSAG 261
E F S + L ++ K P + E A ++AL++A +P +AG
Sbjct: 219 EARFIGSLEAK-PLAKNLGELKSWALAKRPDIMGLEAEKAKGDAEIALAQAERIPNITAG 277
Query: 262 Y-------VSEKVGS-----ERFQGVSFGISVPLWE-NKNRVKQAKASVRAAEMRETDSR 308
+ E GS + G+ I +PL++ N+ +++A+A +AE R +R
Sbjct: 278 FGYQRENTAIEVAGSDVKDRDNLIGLKLSIPIPLFDRNQAGIREAQARKGSAENRYAFAR 337
Query: 309 QQLYSELQLLYERAAGLKTTAENYRRLLTTS--DNADLLKKALDAGEISLLDYIVEMGLY 366
E++ + R A + + Y R + +N L+++A GE+ +L I E +
Sbjct: 338 VTAEREVEAAFARLATAEKSLSIYTREIIPQLEENLKLVQEAYRLGEVGILTVIEEQKKF 397
Query: 367 YDTVSRAMEAERDYQQAFAELS---AVDL 392
++ + A D Q A +L A+DL
Sbjct: 398 FEVNDGYLTALHDRQTALVKLETAVAIDL 426
>gi|39995934|ref|NP_951885.1| metal ion efflux outer membrane protein family protein, putative
[Geobacter sulfurreducens PCA]
gi|39982698|gb|AAR34158.1| metal ion efflux outer membrane protein family protein, putative
[Geobacter sulfurreducens PCA]
Length = 428
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 96/383 (25%), Positives = 158/383 (41%), Gaps = 33/383 (8%)
Query: 33 NNTALKALRESTDAEKLNNRTGIFLSNPEVEV----GYLWGNPAEIGNRTDFSITQSVDI 88
+N LKALR D + + L NP +E+ G + G+P E I+Q
Sbjct: 38 HNGELKALRNEKDVARAGLERAVLLPNPTLELSADSGVMTGSPDETA--LSIGISQEFLT 95
Query: 89 PTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRLRHARTI 148
+ A+ + + + ++ + L+ K+ ELI + R + +
Sbjct: 96 GGKRAKRRAVAEREAEAVHFQIADRERQLSLDVKSSFSELILAQKRRELAGRAVELNGKL 155
Query: 149 AEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERLNG---GKEIAF 205
E RL AGD +LE N ++ +A EG + + LL RL L G G+EI F
Sbjct: 156 LEITRERLAAGDIPELEVNLARVEVARSEGRKIEAEREFAPLLARLRTLLGVPAGEEIGF 215
Query: 206 DESRYTEIVLPQSFSVWFDQVA----EKNPQLAYAREEVAASKQQVALSRAAGLP--VFS 259
D I S+ D + E P L + A + V L+ A +P
Sbjct: 216 D-----GIPEQSPLSISLDDLIRLALENRPDLKAFQATSAKGEAAVELAEAERIPNVTLG 270
Query: 260 AGYVSEK------VGSERFQ----GVSFGISVPLWE-NKNRVKQAKASVRAAEMRETDSR 308
G+ E+ G E+ + GV+ I +PL++ N+ +++A+A + A+ R +R
Sbjct: 271 LGFTHERSTDATGSGDEKTRDNLLGVTLSIPLPLFDRNQAGIREARAVRQGADNRLEFAR 330
Query: 309 QQLYSELQLLYERAAGLKTTAENYRR--LLTTSDNADLLKKALDAGEISLLDYIVEMGLY 366
+ E++ Y R A + T Y L DN L+++A GE+ +L I E Y
Sbjct: 331 SSVPREIEGDYARLAAAEKTLRLYADGILPQLEDNLKLVQEAYRLGEVGILAVIEEQKKY 390
Query: 367 YDTVSRAMEAERDYQQAFAELSA 389
+ + A + Q A A L A
Sbjct: 391 IEVNDGYLVALAERQAALARLEA 413
>gi|110636586|ref|YP_676793.1| possible copper transport protein [Cytophaga hutchinsonii ATCC 33406]
gi|110279267|gb|ABG57453.1| possible copper transport protein [Cytophaga hutchinsonii ATCC 33406]
Length = 1456
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 65/328 (19%), Positives = 133/328 (40%), Gaps = 23/328 (7%)
Query: 23 MNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEVGYLWGNPAEIGNRTDFSI 82
+ + + ++NN +K + E N G + ++G N + ++
Sbjct: 1072 LEEAITLAKQNNAVIKVAEHTL--EYHNKMKGTATEFGKTSATLMYGQYNSFYNDNNITV 1129
Query: 83 TQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRL 142
+Q++ PT+ ++R K + ++ + + + Y K+L ++
Sbjct: 1130 SQTIPFPTVMHKQARYYGEAIKSAELNKHASENELVYQVRQVYYLIEYAKSLRTLYIKQD 1189
Query: 143 RHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERL-NGGK 201
E R K G++N LE + L V ++ + D L +L+ L N +
Sbjct: 1190 SVYTAFYTAAELRYKTGESNMLEKATAESQLYEVRLLKNQNENDILILQSKLKTLLNSAE 1249
Query: 202 EIAFDESRYTEIVLPQSFSVWFDQVA-EKNPQLAYAREEVAASKQQVALSRAAGLPVFSA 260
E+ + ++ L S D +A NP LAY +++VA + + + + +P +
Sbjct: 1250 EVTTTHAYQEDVTLLLSD----DSIAVANNPALAYMKQQVAVNAAAMQVEKNKLMPDITV 1305
Query: 261 GYVSEKV-------------GSERFQGVSFGISVPLWE--NKNRVKQAKASVRAAEMRET 305
GY ++ + G+ RFQG+S GI++P+W +R+K +A A+
Sbjct: 1306 GYFNQSLRGTVNYNDGSITDGATRFQGISAGIAIPIWAKPQADRIKATQAMTNIAKANSE 1365
Query: 306 DSRQQLYSELQLLYERAAGLKTTAENYR 333
+ L + Y+ +T+ E YR
Sbjct: 1366 LYEKNLQRQYTQAYQEYLKYQTSVEFYR 1393
>gi|118745645|ref|ZP_01593614.1| outer membrane efflux protein [Geobacter lovleyi SZ]
gi|118681424|gb|EAV87853.1| outer membrane efflux protein [Geobacter lovleyi SZ]
Length = 413
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 84/400 (21%), Positives = 155/400 (38%), Gaps = 23/400 (5%)
Query: 13 VTAPVWAQNGMNDVLHAIE---ENNTALKALRESTDAEKLNNRTGIFLSNPEVEVGYLWG 69
+++ WA + H I ++N L+ALRE L NP +++ G
Sbjct: 3 LSSTAWAVESTLSLSHVIALSMQHNAELRALREELGVRDAGVTRAGLLPNPTLDLEAGTG 62
Query: 70 NPAEIGNRTDFSITQSVDIPTI--TGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIE 127
N ++ S +IP + G + A+ + L W+ + E KT +
Sbjct: 63 ALTGSKNENSLALGLSQEIPLVGKRGKRLSVAEQERDLYRWQLLDKERRLREEVKTAFYD 122
Query: 128 LIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEG---EISRVQ 184
+ K + +R + R + + + RL AGD +LE N +K+ LA EG E ++
Sbjct: 123 ALLAKERVALADRSIALNRQLLDVTKERLSAGDIPELEMNLVKVELARSEGARIESAKTM 182
Query: 185 VDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASK 244
+ +A L L L G + ++ + + + P L + E +
Sbjct: 183 LQNQARLWTLMGLASGSRPEITGTLDIGTLVAGTLADLQQRANANRPDLRALKAEKKRGE 242
Query: 245 QQVALSRAAGLPVFSAGYV------------SEKVGSERFQGVSFGISVPLWE-NKNRVK 291
+ L++A +P +AG V E + G+ I +PL++ N+ V+
Sbjct: 243 ADITLAQAEKIPNLTAGLVLRRDTTSMEIAGQEGKDTAYTVGIRLSIPIPLFDRNRAGVQ 302
Query: 292 QAKASVRAAEMRETDSRQQLYSELQLLYERAAGLKTTAENYR--RLLTTSDNADLLKKAL 349
+A A + E R + + E+ Y + YR + +N L ++A
Sbjct: 303 EATARKNSTESRLNGTFMAVEREVATAYATFEHAVSVLSLYRIDIIPQLEENLKLTQEAY 362
Query: 350 DAGEISLLDYIVEMGLYYDTVSRAMEAERDYQQAFAELSA 389
GE ++ I E +++ + A RD Q A L +
Sbjct: 363 RLGETGIIAVIQEQKKFFEVSEGHLTALRDRQVALVRLES 402
>gi|150024970|ref|YP_001295796.1| Probable multidrug resistance protein precursor. AcrB/AcrD/AcrF
family protein [Flavobacterium psychrophilum JIP02/86]
gi|149771511|emb|CAL42980.1| Probable multidrug resistance protein precursor. AcrB/AcrD/AcrF
family protein [Flavobacterium psychrophilum JIP02/86]
Length = 1447
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 86/408 (21%), Positives = 170/408 (41%), Gaps = 42/408 (10%)
Query: 4 IFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVE 63
I + + F A + +N + +NN +K+ + ++D + +T + N +
Sbjct: 1052 IVLGLFLFFQNANAQEKITINKAIETALQNNIKIKSQKLNSDYLQKMTKTAYDIPNTGII 1111
Query: 64 VGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAK- 122
Y G N ++Q++ PT+ K Q +LL + KT N L+ K
Sbjct: 1112 SEY--GQFNSNVNDLKIGVSQNIKFPTVY-------KRQKQLLVAQAKTGEYNEALQIKE 1162
Query: 123 ------TCCIELIYNKALLLELERRLRHARTIAEGY----EARLKAGDTNQLEYNKIKLN 172
T E+IY L E E+ L+ + +I + R G++N LE +
Sbjct: 1163 LTKQVRTVFYEMIY----LKEKEKLLQKSDSIYSEFLRKMTLRFDKGESNILEKATAQNQ 1218
Query: 173 LASVEGEISRVQVDRKALLVRLER-LNGGKEIAFDESRYTEIVLPQSFSVWFDQ-VAEKN 230
++ ++ Q D K L + + LN K+ +Y +F + DQ
Sbjct: 1219 SGQIKIQLQETQFDYKILQTQFKYLLNDDKDFMPFCDKYK-----MNFDEFLDQNTISDQ 1273
Query: 231 PQLAYAREEVAASKQQVALSRAAGLP-----VFSAGYVSEKVGSERFQGV--SFGISVPL 283
P + +E+ +SK ++AL ++ +P V+ + + + +QG+ FG+++PL
Sbjct: 1274 PSIKLKEQEINSSKAEIALEKSKKMPELIGGVYWQTFKTNTTLQDSYQGIYGQFGVALPL 1333
Query: 284 WEN--KNRVKQAKASVRAAEMRETDSRQQLYSELQLLYERAAGLKTTAENY--RRLLTTS 339
+ + K++ K + + + AE T + L ++ Q L + +K T Y + L
Sbjct: 1334 FNSSFKSKEKALEINYQIAENELTSEKINLQTQYQELLQNYKKIKETITYYESQALKNVG 1393
Query: 340 DNADLLKKALDAGEISLLDYIVEMGLYYDTVSRAMEAERDYQQAFAEL 387
+ K L GEI+ L++++ + + + +EA R + L
Sbjct: 1394 LVHNAANKKLINGEINYLEWVILINQNIEIQNNYIEAIRKQNETIINL 1441
>gi|39997235|ref|NP_953186.1| metal ion efflux outer membrane protein family protein, putative
[Geobacter sulfurreducens PCA]
gi|39984125|gb|AAR35513.1| metal ion efflux outer membrane protein family protein, putative
[Geobacter sulfurreducens PCA]
Length = 437
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 86/383 (22%), Positives = 157/383 (40%), Gaps = 30/383 (7%)
Query: 32 ENNTALKALRESTDAEKLNNRTGIFLSNP----EVEVGYLWGNPAEIGNRTDFSITQSVD 87
+NN LKALRE + L NP E G L G+ E N ++Q
Sbjct: 49 QNNGELKALREEKGVRDASKFRAGLLPNPTLDLEAGTGALTGSSDE--NNLTIGVSQEFL 106
Query: 88 IPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRLRHART 147
+ + A+ + + W+ + E K +++ + L +R + R
Sbjct: 107 LAGKRDKRLTVAERELEAYRWQLADRERTLREEVKAVFYDVMLAEQRLKLTDRSIDLNRQ 166
Query: 148 IAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERLNGGKEIAFDE 207
+ E + RL AGD +LE N K+ L EG +R++V+R ALL RL + E
Sbjct: 167 LLEVTKDRLAAGDIPELEMNLAKVELTRSEG--ARIEVER-ALLQTRSRLFAFMGLPAGE 223
Query: 208 SRYTEIVLPQSFSVWFDQVAEKN------PQLAYAREEVAASKQQVALSRAAGLPVFSAG 261
+ L FS+ + K P L E + L+ A +P +AG
Sbjct: 224 APAIAGTLDNGFSLNKNLADLKQLALGLRPDLKALEAEKGRGDADITLAEAEKVPNLTAG 283
Query: 262 --YVSEK------VGSERFQ----GVSFGISVPLWE-NKNRVKQAKASVRAAEMRETDSR 308
Y ++ G E+ + G+ + +P+++ N+ +++A+A ++E R T +
Sbjct: 284 LFYTHDRRTDATGTGEEKVRDNLLGIRLSMPIPVFDKNQAGLQEARAKRSSSESRLTAAT 343
Query: 309 QQLYSELQLLYERAAGLKTTAENYRR--LLTTSDNADLLKKALDAGEISLLDYIVEMGLY 366
+ + +++ Y A + Y+ + +N L ++A GE+ +L I E +
Sbjct: 344 RIVERDVETAYISALNAEKVLSLYKSNIIPQLEENLKLTQEAYRLGEVGILSVIQEQKKF 403
Query: 367 YDTVSRAMEAERDYQQAFAELSA 389
++ + A D Q A +L +
Sbjct: 404 FEVSDGYLTALHDRQLALVKLES 426
>gi|145620306|ref|ZP_01776341.1| outer membrane efflux protein [Geobacter bemidjiensis Bem]
gi|144943426|gb|EDJ78516.1| outer membrane efflux protein [Geobacter bemidjiensis Bem]
Length = 462
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 92/384 (23%), Positives = 158/384 (41%), Gaps = 32/384 (8%)
Query: 32 ENNTALKALRESTDAEKLNNRTGIFLSNPEVEV----GYLWGNPAEIGNRTDFSITQSVD 87
+NN L A R+ + L NP +E+ G L GN E FS+ S +
Sbjct: 74 QNNVELNAFRKEEGLREAAKTKAGLLPNPTLELSLESGALTGNSGE----NAFSVGVSQE 129
Query: 88 IPTITGMKSRAAKMQDKLLDWRYK-TDRMNIL-LEAKTCCIELIYNKALLLELERRLRHA 145
+ R A Q +L +R++ DR +L L+AK +++ L E +
Sbjct: 130 FLLAGKREKRLALAQKELEVYRWQLADRERLLRLDAKARFYQVLLAVRKLKLAEGGIELN 189
Query: 146 RTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERLNGGKEIAF 205
R + + + RL AGD +LE N +++ LA EG + + L L GG E+
Sbjct: 190 RHLYQVAKERLAAGDIPELELNLVQVELARSEGAKTAALEAVLSSRAELSLLLGGSEV-- 247
Query: 206 DESRYTEIV-----LPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVALSRAAGLPVFSA 260
D + T + + ++ F E+ P L R E +++L++A G+P +A
Sbjct: 248 DPALPTGPLEAGGAVKEAQGDLFRLALERRPDLKALRAEAEKGSAELSLAQAEGVPNLTA 307
Query: 261 GY-------VSEKVGSERFQ-----GVSFGISVPLWE-NKNRVKQAKASVRAAEMRETDS 307
G E G E G++ + +PL++ N++ V++A A R +
Sbjct: 308 GLGLKRDTTTVEVAGLEGKDTSYTVGITLSMPIPLFDKNQSGVREASVRRDTAGSRLAVA 367
Query: 308 RQQLYSELQLLYERAAGLKTTAENYRR--LLTTSDNADLLKKALDAGEISLLDYIVEMGL 365
+++ E+ Y + + Y R + +N L +A GE+ +L E
Sbjct: 368 VKRVEREVATAYASLSNAEQLLSLYLRNVMPQLEENLKLTSEAYQLGEVPVLTVFEEQKK 427
Query: 366 YYDTVSRAMEAERDYQQAFAELSA 389
Y + +EA QQA +L A
Sbjct: 428 YLEVNQGYLEALNQRQQALFKLEA 451
>gi|120435649|ref|YP_861335.1| AcrB/AcrD/AcrF family heavy metal cation efflux protein containing
OEP domains [Gramella forsetii KT0803]
gi|117577799|emb|CAL66268.1| AcrB/AcrD/AcrF family heavy metal cation efflux protein containing
OEP domains [Gramella forsetii KT0803]
Length = 1466
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 78/384 (20%), Positives = 154/384 (40%), Gaps = 35/384 (9%)
Query: 32 ENNTALKALRESTDAEKLNNRTGIFLSNPEVEVGYLWG--NPAEIGNRTDFSITQSVDIP 89
ENN +K + D EK I + P+ E Y G N I + + +TQ ++ P
Sbjct: 1090 ENNNRIKIAQYEIDVEKTGKYGAITI--PKTEFSYSNGEFNTPTIKDNL-YGVTQRINFP 1146
Query: 90 TITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRLRHARTIA 149
T+ + + AK + K + ++ + K+ + +Y L E E L+H ++
Sbjct: 1147 TVYTSQFKLAKARVKNSEQLKVIAENELVADVKSAYLRYLY----LKENEHLLQHQDSLY 1202
Query: 150 EGY----EARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLER-LNGGKEIA 204
R K G++ +LE + + + + D + +L+ LN I+
Sbjct: 1203 SNLNRSSSMRYKTGESTKLESVTSATQSMQIRNRLQQNEADLRIAKKQLQVVLNTNDNIS 1262
Query: 205 FDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVALSRAAGLPVFSAGYVS 264
+ T + L + Q +++P Y ++++ K++ + R LP GY S
Sbjct: 1263 VTNTELTPMELDFTME---SQSVKQSPLYLYFQQQLELKKRETNVERNKVLPDLMFGYNS 1319
Query: 265 EKV--------------GSERFQGVSFGISVPLWE--NKNRVKQAKASVRAAEMRETDSR 308
+ +RF G+++P++ +++R+K AK A+ + ++
Sbjct: 1320 QTFIGDQFIDGQDIKYDNGDRFSFFQVGVAIPIFPGGHRSRIKAAKIEENIAQSQIELNQ 1379
Query: 309 QQLYSELQLLYERAAGLKTTAENYRR--LLTTSDNADLLKKALDAGEISLLDYIVEMGLY 366
QL ELQ L + L+ T Y+ L D +K+ +G +S Y+ + L
Sbjct: 1380 TQLEGELQNLLQEYYKLQGTLNYYQNEALPQAELIIDNSEKSFRSGNVSYAQYLQNLTLA 1439
Query: 367 YDTVSRAMEAERDYQQAFAELSAV 390
+ + Y Q+ + A+
Sbjct: 1440 NSIQTEYLNTLYQYNQSIIVIEAL 1463
>gi|110637916|ref|YP_678123.1| cation efflux protein [Cytophaga hutchinsonii ATCC 33406]
gi|110280597|gb|ABG58783.1| cation efflux protein [Cytophaga hutchinsonii ATCC 33406]
Length = 1455
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 64/327 (19%), Positives = 131/327 (40%), Gaps = 23/327 (7%)
Query: 32 ENNTALKALRESTDAEKLNNRTGIFLSNPEVEVGYLWGNPAEIGNRTDFSITQSVDIPTI 91
+NN ++KA + + D K N G + ++G N +F+I+Q++ PT
Sbjct: 1079 QNNYSIKAAQYNVDYNK--NLKGTSTDIGKTSATLMYGQYNSYYNDNNFTISQTIPFPTT 1136
Query: 92 TGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRLRHARTIAEG 151
+++ K ++ ++ KT L ++KA L ++
Sbjct: 1137 MHRQAQYYNAALKSAEYNKDMSENELIRNVKTAYYALQFSKARRTFLLKQDSIFVVFLRS 1196
Query: 152 YEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERLNGGKEIAFDESRYT 211
+ RL+ G++N LE + L + I++ D +++ +L D +
Sbjct: 1197 ADLRLRTGESNALEKATAESQLYEIRTLIAQNDAD---IIIYQNQLKTLLNTNDDITTQG 1253
Query: 212 EIVLPQSFSVWFDQVA-EKNPQLAYAREEVAASKQQVALSRAAGLPVFSAGYVSEKV--- 267
+ ++ + D A NP L Y ++V ++ + R+ +P + GY ++ +
Sbjct: 1254 ITLDKRTLLIGADSAAVNGNPALRYFTQQVQVAEAAKNVERSRLMPDITLGYFNQSLYGT 1313
Query: 268 -----------GSERFQGVSFGISVPLWENKN--RVKQAKASVRAAEMRETDSRQQLYSE 314
G+ RFQGV+ G+++P+W ++K +A A+ + L E
Sbjct: 1314 PNYQDPTVVANGTSRFQGVTIGVAIPIWAKPQLAKIKANEAYKNVAQANLDLYEKNLQGE 1373
Query: 315 LQLLYERAAGLKTTAENYR-RLLTTSD 340
++ K + E Y L T+D
Sbjct: 1374 YAQAFQSYLKFKNSLEYYETNALPTAD 1400
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.316 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,277,646,962
Number of Sequences: 5470121
Number of extensions: 49302367
Number of successful extensions: 202246
Number of sequences better than 1.0e-05: 55
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 202170
Number of HSP's gapped (non-prelim): 59
length of query: 392
length of database: 1,894,087,724
effective HSP length: 135
effective length of query: 257
effective length of database: 1,155,621,389
effective search space: 296994696973
effective search space used: 296994696973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)