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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs9928218          
refSNP ID: rs9928218
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NT_010393.15:g.21697479G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss85746331 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9928218 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13767096BCM_SSAHASNP|chr16.NT_024812.10_1784066fwd/TA/Gattagttataaggcaagttctgtgggatggaactacatctcccttttacagaggggaaac11/05/0311/22/03119Genomicunknown
ss74968388ILLUMINA|ILMN_Human_1M_rs9928218fwd/TA/Gattagttataaggcaagttctgtgggatggaactacatctcccttttacagaggggaaac08/28/0708/29/07129Genomicunknown
ss85746331HGSV|Cor19129_SNV_20070510.chr16_30291901fwd/TA/Gattagttataaggcaagttctgtgggatggaactacatctcccttttacagaggggaaac12/06/0712/10/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9928218|allelePos=465|totalLen=965|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 CTGGCTATCA AGGCACCTCA CAGAAAGTGA CCAGCTGGCT GTCCTTTTAG GGTCTTTTCC
 TCCCCTCTTG AGTTCCAGCC TCCACACCAG TACCCAGAGA AAATATTCTA GACTCATACT
 AGATCACATC CTTCTTCTGC ATGAAACCTT TCCAAGGTTC CCCAGGGTCT CCGTCCTGTG
 CCTGGCAAAG GCCCCTCAGG GGCTGGTCAC CAGCCCCATC ACAATTCTGG CCACCTGAAC
 ACTTCTGATC TTCCGCTCTC CAGGCCTTTG CTCAGGCCAT GCCCTCCGCC CAGCACATCT
 GCTCCTCCAC CTGCACCTGA CTCCCTGGCC CTCGTGAAGC CACTCCCATA CTCCTAGACA
 GGGCTGCTGC GCCCTCCACT TCTGGGCTCC TGACCAGCTC TGGTATGTCA GTTTCTGCAT
 TCATTCCTGT CTCTATTAGT TATAAGGCAA GTTCTGTGGG ATGG
 R
 AACTACATCT CCCTTTTACA GAGGGGAAAC CAAGGCCCAG CACAAAACCT GAGACCACAA
 AGCATCTTGC CTCAAAAAAT CCCTCTTGGC TCGGCGCGGT GGCTCATGCC TGTAATCCCA
 GCACTTTGAG CACTTTGGGA GGTCGAGACG GGTGGATCAT CTGAAGTCGG AATTCAAGAC
 CAGCCTGGCC AACATGGTGA AACGCCATCT CTACTAAAAA TACAAAAAAT TAGATGCCGG
 GCACGGTGGC TCACGCCTGT AATCCCAGCA CTTTGGGAGG CCGAGGCAGG CAGATCACAA
 GGTCAGGAGA TCGAGATCAT CCTGGCTAAC GCGGGGAAAC CCCGTCTCTA CTAAAAATAC
 AAAAAAATTA GGCGGGCGTG GTGACACGCG CCTGTAGTCC CAGCTACTCG GGAGGCTGAA
 GCAGGAGAAT CACTTGAACC CGGGAGGCGG AGGTTACAGT GAGCCAAGAT CACGCCACTG
 CACTCCAGCC CGGATAACAA

  GeneView back to top
GeneView via analysis of contig annotation: MYLPF fast skeletal myosin light chain 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010393->NM_013292
svfunction
HuRefNW_001838236->NM_013292
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_010393->NM_013292->NP_03742421697479forward5' near gene
HuRefNW_001838236->NM_013292->NP_03742464367forward5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9928218 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838236.16436727946165plusGalt_assembly_8HuRefHuRefview428
16NW_926306.1156761429914244minusCalt_assembly_1CeleraCeleraview428
16NT_010393.152169747930291901plusGref_assemblyreferencereferenceview428

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_024812
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC116348.3 AC127457.3 NC_000016.8 AC133556.1 AC140526.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .